RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780745|ref|YP_003065158.1| OstA family protein
[Candidatus Liberibacter asiaticus str. psy62]
(181 letters)
>gnl|CDD|32117 COG1934, COG1934, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 173
Score = 74.2 bits (182), Expect = 2e-14
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 7/150 (4%)
Query: 28 QAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNN 87
AA+S K ++ I I+AD E+ D A F GNV +TQ +L+ADK+T+ +
Sbjct: 16 LAASSPAFALKGDRDQPITIEADQQELDDKNGVATFTGNVVVTQGTITLRADKVTVTRDK 75
Query: 88 TNRD--VSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRILVLNGDRADKVILKEKLN 145
+ N + + A D + +VL G + + N
Sbjct: 76 EGGKEVIEANGNPATFSQKVDNGK-TQKGTADQAIYDLKNDTIVLTG----NAYVLQLGN 130
Query: 146 TFLGCKLIVNIDTSFASLQGCESDQVQSII 175
G K+ T A + + +V++++
Sbjct: 131 VIRGDKITYLTKTGRAVAESSKGGRVRTVL 160
>gnl|CDD|146549 pfam03968, OstA, OstA-like protein. This family of proteins are
mostly uncharacterized. However the family does include
E. coli OstA that has been characterized as an organic
solvent tolerance protein.
Length = 141
Score = 66.9 bits (164), Expect = 3e-12
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 14 LLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQED 73
LL L+ +LL A S AA + ++ I I+AD LE D A F GNV +TQ
Sbjct: 3 LLLLLLLLLLASASALAA------QADRDQPIEIEADNLEADDKKGVATFTGNVVVTQGS 56
Query: 74 FSLQADKMTIDYNNTNRDVSNKINRMDVE------RNIFIQSGEINVIASNGYVDFQKRI 127
+L+ADK+ + + SN I R++ + + + +I A D +KRI
Sbjct: 57 ITLRADKVVVTQDKK----SNGIERLEATGPATFRQKVDLVGRQIRGTADRAEYDSKKRI 112
Query: 128 LVLNGDRADKVILKEKLNTFLGCKLIVNIDT 158
+VL G+ +L + N+ G K+ +I
Sbjct: 113 IVLTGN----AVLTQGGNSIRGDKITYDIKE 139
>gnl|CDD|31641 COG1452, Imp, Organic solvent tolerance protein OstA [Cell
envelope biogenesis, outer membrane].
Length = 784
Score = 34.2 bits (78), Expect = 0.020
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 14 LLALVFVLLKADLSQAAASYMTRFKVLGNE----KIHIKADMLEVKDAVQKAFFKGNVFM 69
L L LL A L+ + + VLG E KI I+AD LE Q +GNV +
Sbjct: 20 LQLLAAALLSACLAGKPS--AAQLLVLGPEQNLPKILIEADALEYNRKDQIITAEGNVEI 77
Query: 70 TQEDFSLQADKMTIDYNNTNRDV 92
D+ L ADK +DY+ V
Sbjct: 78 LYGDYRLLADK--VDYDQKTDRV 98
>gnl|CDD|32666 COG2838, Icd, Monomeric isocitrate dehydrogenase [Energy production
and conversion].
Length = 744
Score = 27.3 bits (60), Expect = 2.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 45 IHIKADMLEVKDAV-----QKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRM 99
+H+KA M++V D + K F+K +VF D + ++ NN D+ +KI +
Sbjct: 254 LHLKATMMKVSDPIIFGHAVKVFYK-DVF---AKHGDLFDALGVNVNNGLSDLYSKIESL 309
Query: 100 D 100
Sbjct: 310 P 310
>gnl|CDD|36120 KOG0902, KOG0902, KOG0902, Phosphatidylinositol 4-kinase [Signal
transduction mechanisms].
Length = 1803
Score = 26.5 bits (58), Expect = 3.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 27 SQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFFK 64
S A A +M FKV EK ++ K + Q A FK
Sbjct: 1514 SAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFK 1551
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants.
Pat17 is an isozyme of patatin cloned from Solanum
cardiophyllum. Patatin is a storage protein of the
potato tuber that shows Phospholipase A2 activity (PLA2;
EC 3.1.1.4). Patatin catalyzes the nonspecific
hydrolysis of phospholipids, glycolipids, sulfolipids,
and mono- and diacylglycerols, thereby showing lipid
acyl hydrolase activity. The active site includes an
oxyanion hole with a conserved GGxR motif; it is found
in almost all the members of this family. The catalytic
dyad is formed by a serine and an aspartate. Patatin
belongs to the alpha-beta hydrolase family which is
identified by a characteristic nucleophile elbow with a
consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X
= any residue, and Nu = nucleophile). Patatin-like
phospholipase are included in this group. Members of
this family have also been found in vertebrates.
Length = 349
Score = 26.2 bits (58), Expect = 5.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 104 NIFIQSGEINVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLI 153
IF QS + D +K++ L G + D V L + LN LG +
Sbjct: 86 KIFPQSTGQ-------FEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRL 128
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 25.2 bits (55), Expect = 9.2
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 45 IHIKADMLEVKDAV-----QKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRM 99
+H+KA M++V D + F+K +VF + D++ ++ NN D+ KI +
Sbjct: 248 LHVKATMMKVSDPIIFGHAVSVFYK-DVF---DKHGDLFDQLGVNVNNGIGDLYAKIVSL 303
Query: 100 DVE 102
Sbjct: 304 PAS 306
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.137 0.378
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,948,842
Number of extensions: 94333
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 14
Length of query: 181
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,362,145
Effective search space: 405679485
Effective search space used: 405679485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)