RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780745|ref|YP_003065158.1| OstA family protein
[Candidatus Liberibacter asiaticus str. psy62]
(181 letters)
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural
genomics, montreal-kingston bacterial structural
genomics initiative, BSGI; 2.16A {Escherichia coli K12}
PDB: 2r1a_A
Length = 159
Score = 70.1 bits (171), Expect = 3e-13
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 42 NEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTN--RDVSNKINRM 99
++ IHI++D + F GNV +TQ + ADK+ + ++V + +
Sbjct: 7 DQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKP 66
Query: 100 DVERNIFIQSGEINVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTS 159
+ + AS + + K +VL G+ L++ + G K+ +
Sbjct: 67 ATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGN----AYLQQVDSNIKGDKITYLVKEQ 122
Query: 160 FASLQGCESDQVQSII 175
+ +V +++
Sbjct: 123 KMQAFSDKGKRVTTVL 138
Score = 29.3 bits (65), Expect = 0.52
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 41 GNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNN 87
+ + A + + A GN ++ Q D +++ DK+T
Sbjct: 75 NGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKE 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.8 bits (72), Expect = 0.092
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 97/211 (45%)
Query: 26 LSQAAASYMTRFKVLG------NEKI-----H----IKADMLEVKD-------AVQKA-- 61
+ Q A Y+ K+LG + H + A + D +V+KA
Sbjct: 243 VIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 62 --FFKGNVFMTQEDF-------SLQADKMTIDYNNTN-------RDVSNKINRMDVERNI 105
FF G E + S+ D +++ N +++ + V+
Sbjct: 302 VLFFIG--VRCYEAYPNTSLPPSILED--SLENNEGVPSPMLSISNLT----QEQVQD-- 351
Query: 106 FIQSGEINVIASNGYVDFQKRI---LVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFA- 161
++ +N ++ K++ LV NG + L+V +
Sbjct: 352 YVN-------KTNSHLPAGKQVEISLV-NGAKN----------------LVV------SG 381
Query: 162 ---SLQG---------CESDQVQSIIRYDGR 180
SL G S QS I + R
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 30.7 bits (69), Expect = 0.22
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 58/150 (38%)
Query: 21 LLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQE-------- 72
L+ AD + A S + + L + AD++ ++ V+ F++G MT +
Sbjct: 1752 LIPADATFAGHS-LGEYAALAS-----LADVMSIESLVEVVFYRG---MTMQVAVPRDEL 1802
Query: 73 -----------------DFSLQA--------DKMT------IDYNNTNRD--VSNKINRM 99
FS +A K T ++YN N+ + + +
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 100 DVERNI--FIQSGEINVIASNGYVDFQKRI 127
D N+ FI+ +I++I + QK +
Sbjct: 1863 DTVTNVLNFIKLQKIDII------ELQKSL 1886
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 340
Score = 29.6 bits (65), Expect = 0.41
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 4 FLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFF 63
+ I + L + L A GN++I A + +K + +
Sbjct: 277 LIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETV 336
Query: 64 KGNV 67
K NV
Sbjct: 337 KANV 340
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 2etf_A 1z0h_A 2nm1_A
3g94_A 1f82_A
Length = 1290
Score = 29.1 bits (65), Expect = 0.57
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 81 MTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRI 127
+ ID+N+ N ++ IN+ N FI ++ + +++
Sbjct: 748 INIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIPLAVEKL 794
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.5 bits (63), Expect = 0.79
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 42/184 (22%)
Query: 13 HLLA--LVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKAFF------- 63
HLL VL A S+ Y RF NE I +K + L V + +++ +
Sbjct: 286 HLLPRNTQIVLFSATFSERVEKYAERFAPNANE-IRLKTEELSV-EGIKQLYMDCQSEEH 343
Query: 64 KGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDF 123
K NV + E + L +I + +D + +I R + + + N
Sbjct: 344 KYNVLV--ELYGLLTIGQSIIFCK-KKDTAEEI-----ARRMTADGHTVACLTGN----- 390
Query: 124 QKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRYD----- 178
L G + D ++ ++ T K++V T+ +G + QV ++ YD
Sbjct: 391 ------LEGAQRDAIMDSFRVGT---SKVLV---TTNVIARGIDVSQVNLVVNYDMPLDQ 438
Query: 179 -GRP 181
GRP
Sbjct: 439 AGRP 442
>1hz6_A Protein L; four stranded beta-sheet with central alpha helix,
binds kappa light chain of immunoglobulins, protein
binding; 1.70A {Finegoldia magna atcc 29328} SCOP:
d.15.7.1 PDB: 1hz5_A 1k53_A 1k51_A 1k52_A 1jml_A 1k50_A
2jzp_A 2kac_A 1kh0_A 1ymh_E 1mhh_E* 1hez_E 1ynt_E
Length = 72
Score = 26.3 bits (57), Expect = 3.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 43 EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNK 95
E++ IKA+++ + Q A FKG + AD + D DV++K
Sbjct: 10 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADK 62
>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio
vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} SCOP:
e.26.1.1 PDB: 1e9v_A 1e2u_A* 1oa1_A 1w9m_A 1e1d_A*
Length = 553
Score = 26.1 bits (57), Expect = 4.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 28 QAAASYMTRFKVLGNEKIHIKADMLEV 54
+ A+Y VLG K I MLE
Sbjct: 156 KGVAAYAEHAAVLGFRKTEIDEFMLEA 182
>2gum_A Glycoprotein B; envelope glycoprotein, membrane fusion, viral
protein; 2.10A {Human herpesvirus 1 strain kos} SCOP:
e.76.1.1
Length = 628
Score = 25.9 bits (57), Expect = 5.1
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 62 FFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINV 114
F+ E + AD+ RD++ K + + + V
Sbjct: 198 FYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTV 250
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex
component, helical bundle, membrane tethering C membrane
traffic, VPS51; HET: MSE; 2.90A {Saccharomyces
cerevisiae}
Length = 271
Score = 26.0 bits (56), Expect = 5.7
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 112 INVIASNGYVDFQKRILVLNGDRADKVILKEKLNTF 147
+ +N +L L G D + K+ + +
Sbjct: 140 SKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAY 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 323
Score = 25.7 bits (55), Expect = 6.5
Identities = 6/58 (10%), Positives = 19/58 (32%)
Query: 4 FLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQKA 61
+ + LA V ++ ++ + R + + + + ++ KA
Sbjct: 266 IVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 323
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia
magna atcc 29328} SCOP: d.15.7.1
Length = 78
Score = 25.1 bits (54), Expect = 9.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 43 EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVE 102
E++ IKA+++ + Q A FKG + AD + D DV++K ++++
Sbjct: 16 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIK 75
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.378
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,412,521
Number of extensions: 61083
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 95
Effective length of database: 3,608,246
Effective search space: 342783370
Effective search space used: 342783370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)