BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780745|ref|YP_003065158.1| OstA family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (181 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 181

 Score =  369 bits (946), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MSAFLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60
           MSAFLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK
Sbjct: 1   MSAFLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60

Query: 61  AFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGY 120
           AFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGY
Sbjct: 61  AFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGY 120

Query: 121 VDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRYDGR 180
           VDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRYDGR
Sbjct: 121 VDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRYDGR 180

Query: 181 P 181
           P
Sbjct: 181 P 181


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 26.2 bits (56), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 70  TQEDFSLQADKMTIDYNNTN---RDV----------SNKINRMDVERNIFIQSGEINVIA 116
           T E+ S +A+++ ++Y+      RD+          +N+INRMD E   F   G   V +
Sbjct: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554

Query: 117 SNGYVDFQKRILVLNG 132
             G V+  K   + NG
Sbjct: 555 --GPVEMVKCFPIENG 568


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 25.0 bits (53), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 99  MDVERNIFIQSGEINVIASNGYVDFQKRILVLNGDR--ADKVILKEKLN 145
           M+VER+I +  G I ++ SN  V+ Q   +    D+    +VI   K++
Sbjct: 95  MEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMD 143


>gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 247

 Score = 25.0 bits (53), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 81  MTIDYNNTN-----RDVSNKINRMDVERNIFIQSGEINVIASNGYVD 122
           M I+YN +      R  +    +  +E+ IF+ +GEI V+   G  D
Sbjct: 6   MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTD 52


>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 404

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 121 VDFQKR-ILVLNGDRADKVILKEKLNTFLGCKLIVNID 157
           +DFQ+   + +NG      +L E+LN +  C  I  ID
Sbjct: 225 IDFQRGDPIAINGQVMSPEVLLEQLNQYGRCNGIGRID 262


>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 482

 Score = 21.9 bits (45), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 121 VDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVN-----------IDTSFASLQGCESD 169
           +D  KR+L+++ D     I+K+ + ++     IVN           ++  F SL  CE D
Sbjct: 7   LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSLINCEDD 66

Query: 170 Q 170
           +
Sbjct: 67  K 67


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.137    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,554
Number of Sequences: 1233
Number of extensions: 4021
Number of successful extensions: 13
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 328,796
effective HSP length: 69
effective length of query: 112
effective length of database: 243,719
effective search space: 27296528
effective search space used: 27296528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 35 (18.1 bits)