Query         gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs    158 out of 565
Neff          7.9 
Searched_HMMs 39220
Date          Sun May 29 19:05:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780746.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG5375 Uncharacterized protei 100.0 1.9E-41       0  253.2  12.5  195   13-210    21-216 (216)
  2 pfam06835 DUF1239 Protein of u  99.9 2.5E-21 6.4E-26  139.4  24.1  168   35-206     4-176 (176)
  3 PRK10893 hypothetical protein;  99.8 3.2E-18 8.1E-23  121.8  19.8  182   21-211     2-188 (190)
  4 COG3117 Uncharacterized protei  99.6 1.2E-14 3.1E-19  101.5  14.1  176   26-209     6-186 (188)
  5 COG1934 Uncharacterized protei  98.7 1.9E-06 4.8E-11   55.3  14.9  116   70-213    48-168 (173)
  6 pfam03968 OstA OstA-like prote  98.7 7.9E-07   2E-11   57.4  12.9   44  120-164    97-140 (141)
  7 pfam06835 DUF1239 Protein of u  98.7 3.2E-06 8.2E-11   53.9  15.3  106   66-176    69-175 (176)
  8 PRK10894 hypothetical protein;  98.6 9.7E-06 2.5E-10   51.2  16.0  116   71-214    52-173 (184)
  9 COG1452 Imp Organic solvent to  98.5 9.2E-06 2.3E-10   51.4  13.6  122   78-208    47-170 (784)
 10 COG1452 Imp Organic solvent to  98.4   4E-06   1E-10   53.4   9.7   78  120-198    53-131 (784)
 11 PRK03761 organic solvent toler  98.4 5.6E-05 1.4E-09   46.9  14.9  127   70-207    40-173 (782)
 12 PRK03761 organic solvent toler  98.3 1.2E-05 3.1E-10   50.7  11.2   78  119-198    51-134 (782)
 13 PRK04423 organic solvent toler  98.2 0.00024 6.1E-09   43.4  15.3  119   77-208    54-173 (798)
 14 pfam03968 OstA OstA-like prote  98.2 0.00036 9.3E-09   42.3  16.1   88  119-207    27-125 (141)
 15 PRK10894 hypothetical protein;  98.2 5.5E-05 1.4E-09   47.0  11.8  115   78-200    31-155 (184)
 16 COG1934 Uncharacterized protei  98.1 0.00015 3.7E-09   44.6  12.5   81  120-200    62-151 (173)
 17 TIGR03002 outer_YhbN cell enve  98.0 0.00029 7.4E-09   42.9  12.5  123   78-208     5-150 (150)
 18 TIGR03002 outer_YhbN cell enve  97.9  0.0013 3.2E-08   39.3  14.4   94  117-211     7-114 (150)
 19 PRK04423 organic solvent toler  97.8 0.00024 6.1E-09   43.4   9.7   79  118-199    58-136 (798)
 20 COG3117 Uncharacterized protei  97.3  0.0085 2.2E-07   34.6  11.9  152   21-176     4-182 (188)
 21 PRK10893 hypothetical protein;  97.3  0.0098 2.5E-07   34.2  11.6  105   67-177    77-183 (190)
 22 COG5375 Uncharacterized protei  93.9    0.41   1E-05   25.1   8.9  105   66-178   109-213 (216)
 23 COG3008 PqiB Paraquat-inducibl  87.7     1.2 3.1E-05   22.4   4.8   64   26-89     21-94  (553)
 24 PRK10807 paraquat-inducible pr  87.2     1.3 3.2E-05   22.3   4.6   23   27-49     18-40  (546)
 25 TIGR02099 TIGR02099 conserved   80.7     3.8 9.6E-05   19.6   4.8  100   79-184  1171-1281(1362)
 26 COG4384 Mu-like prophage prote  62.9      10 0.00026   17.1   7.4   74  123-203    98-175 (203)
 27 KOG0860 consensus               52.8      15 0.00039   16.2   3.5   24    2-25     60-84  (116)
 28 PRK01904 hypothetical protein;  45.5      20 0.00052   15.5   6.0   96   51-152    25-126 (217)
 29 pfam05449 DUF754 Protein of un  42.5      22 0.00057   15.2   2.6   31   11-41     15-45  (83)
 30 PRK04517 hypothetical protein;  39.3      26 0.00065   14.9   5.8   49   27-75      1-50  (216)
 31 pfam05137 PilN Fimbrial assemb  31.9      34 0.00086   14.2   3.8   20   70-89    109-128 (162)
 32 pfam11696 DUF3292 Protein of u  30.0      37 0.00093   14.0   3.6   20  179-198   597-618 (641)
 33 pfam03961 DUF342 Protein of un  27.0      41  0.0011   13.7  14.1  106   79-185   138-253 (450)
 34 TIGR01000 bacteriocin_acc bact  26.5      42  0.0011   13.7   2.7   22   18-41     15-36  (476)
 35 COG3088 CcmH Uncharacterized p  22.1      52  0.0013   13.2   2.1   25   25-49    105-129 (153)
 36 TIGR01433 CyoA ubiquinol oxida  22.0      29 0.00075   14.6   0.3   51   19-69     72-124 (228)
 37 pfam06890 Phage_Mu_Gp45 Bacter  22.0      52  0.0013   13.2   6.1   18  124-141    78-95  (162)
 38 pfam05568 ASFV_J13L African sw  21.2      54  0.0014   13.1   1.6   14   59-72     61-74  (189)
 39 pfam12166 DUF3595 Protein of u  20.4      56  0.0014   13.0   3.3   16   70-85    110-125 (416)

No 1  
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00  E-value=1.9e-41  Score=253.17  Aligned_cols=195  Identities=22%  Similarity=0.330  Sum_probs=176.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCEEEEECEEEEEECCCCCEEEEEEEEEE
Q ss_conf             3552010368899999999999999999876420034444-454431345543058711089988499888999960113
Q gi|254780746|r   13 QRSKYRQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRIST-FSKSSIDLLDFEPMIMKKFILSDYSKDRVKYSLVAERAK   91 (215)
Q Consensus        13 ~~~~~~r~Sr~V~~lKi~Lpl~al~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~m~~P~~~G~~~~g~~~~itA~~A~   91 (215)
                      ...+++||||+|+.||+.||++|.++++.+.+.+++..+. .....-...+..+++|.+|+|.|++.+|+||.++|++|+
T Consensus        21 ~y~~a~Rhs~rVr~Lki~lpl~a~~~a~~fi~~s~~rt~~~~~~~~~a~~~~gkivm~~P~f~G~nk~~~~ysitA~RAi  100 (216)
T COG5375          21 AYARARRHSRRVRRLKIGLPLAAGGLALAFIAQSVWRTPALAVSLETAEIETGKIVLKKPRFNGVNKDGRPYSITAERAI  100 (216)
T ss_pred             HHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEHHHHH
T ss_conf             89998642121022201578998888875344443113677630032412357479706613256278975033077776


Q ss_pred             ECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEEEEECCC
Q ss_conf             35889874499995689998168845679999345899735646999777799951573999821279972038995385
Q gi|254780746|r   92 TSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDP  171 (215)
Q Consensus        92 ~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~i~s~~~  171 (215)
                      ||. .+|+++.|+.|.|.++..+..  ...++|++|+||+++++|.|..+|+|.+++|+.+..+++.+|+.+|.+.++.|
T Consensus       101 qD~-~n~~~i~Le~i~a~~pvg~~~--~a~v~Ak~Gvyd~~~ntL~l~~dv~i~~~eGi~a~~~sA~vDl~~G~~sg~~p  177 (216)
T COG5375         101 QDV-KNPNIITLEGILAILPVGEDN--PAQVTAKSGVYDRDTNTLDLTDDVKITTDEGIRADFQSAFVDLRTGNMSGDSP  177 (216)
T ss_pred             HCC-CCCCEEEEEEEEEECCCCCCC--CEEEEECCCEEECCCCEEECCCCEEEECCHHHHCCCCHHEEEECCCCCCCCCC
T ss_conf             502-688748996001552479997--34687123426667871324687688535433135601246602561026786


Q ss_pred             EEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHHHH
Q ss_conf             899907718997079999278689998896999831132
Q gi|254780746|r  172 VIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPGVL  210 (215)
Q Consensus       172 V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~~  210 (215)
                      |.+.+++|.|+|++|.+.++|++|+|+|+||++|+|+.+
T Consensus       178 v~i~~~~gsI~ads~~v~D~G~iivF~g~Vr~~id~s~~  216 (216)
T COG5375         178 VDISGKGGSITADSYSVTDKGKIIVFEGNVRTRIDPSDI  216 (216)
T ss_pred             EEECCCCCCEEEEEEEEECCCCEEEEECCEEEEECCCCC
T ss_conf             333079984876136752288489995656898447789


No 2  
>pfam06835 DUF1239 Protein of unknown function (DUF1239). This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown.
Probab=99.91  E-value=2.5e-21  Score=139.35  Aligned_cols=168  Identities=14%  Similarity=0.160  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEC
Q ss_conf             99999987642003444445443134554305871108998849988-89999601133588987449999568999816
Q gi|254780746|r   35 TVTIVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQ  113 (215)
Q Consensus        35 al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~  113 (215)
                      +++++++++|+.......+..............|++..+..++.+|+ .|.++|+++....  +.+...|+.|...++..
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~pDy~~~~~~~~~~d~~G~l~~~l~a~~~~~~~--~~~~~~l~~P~~~~~~~   81 (176)
T pfam06835         4 ALLLAGWLLWLLSEESSQDEPQVKPDPSEPDYTAENLTTTQYDEQGKLQYRLTADKLEHYP--DDDTTEFTNPVLIIYQD   81 (176)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECEEEEEC--CCCCEEEEEEEEEEECC
T ss_conf             9999999998663765333553568999998999922999999999899999904579965--89968999639999779


Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECC----CCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEE
Q ss_conf             88456799993458997356469997777999515----73999821279972038995385899907718997079999
Q gi|254780746|r  114 RSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKD----NLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIE  189 (215)
Q Consensus       114 ~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~----G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~  189 (215)
                      ++  ..+.++|++|.++.+.+.+.|.|+|++....    ..+|.|+.+.|+.+++.+.|+.||.+.+|++.++|.||.++
T Consensus        82 ~~--~~w~i~A~~g~~~~~~~~i~L~g~V~i~~~~~~~~~~~l~T~~l~~~~~~~~~~td~~V~i~~~~~~~~g~gm~~~  159 (176)
T pfam06835        82 GK--PPWTITADRAKLNKDGQTLYLYGNVVIQSLEDKSRLTTITTENLTVNLDTQDASTDQPVTITGPNFVSTGTGMKAN  159 (176)
T ss_pred             CC--CEEEEEECEEEEECCCCEEEEECCEEEEECCCCCCCEEEEEHEEEEECCCCEEEECCCEEEEECCCEEEEEEEEEE
T ss_conf             98--3699997949993799699998999999768998756999220999947779994874999909979998889999


Q ss_pred             ECCCEEEEECCEEEEEC
Q ss_conf             27868999889699983
Q gi|254780746|r  190 NSSRSAVFAGQVSVVVN  206 (215)
Q Consensus       190 ~~~~~i~F~g~V~l~i~  206 (215)
                      .+.+++.|.|+||..|+
T Consensus       160 l~~~~~~l~~~Vr~~ye  176 (176)
T pfam06835       160 LKTGTAELLSNVRGRYE  176 (176)
T ss_pred             CCCCEEEEECCCEEEEC
T ss_conf             75899999436169959


No 3  
>PRK10893 hypothetical protein; Provisional
Probab=99.83  E-value=3.2e-18  Score=121.82  Aligned_cols=182  Identities=14%  Similarity=0.176  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCC
Q ss_conf             6889999999999999999987642003444445443134554305871108998849988-899996011335889874
Q gi|254780746|r   21 VRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKG   99 (215)
Q Consensus        21 Sr~V~~lKi~Lpl~al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~   99 (215)
                      |+.-+|+-++|-++|+++++|.+.    ...... ......+.......+-+=.-++.+|. .|.++|+++ .... ..+
T Consensus         2 ~~~~~w~~~~l~~~a~~l~~w~~~----~~~~~~-~~~~~~~~P~y~a~~l~t~~y~~~G~lsy~i~A~~~-eHY~-~~~   74 (190)
T PRK10893          2 SKTRRWVIIVLSLAALVLIGWNMA----DKDDTA-QVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHV-EYYS-DQA   74 (190)
T ss_pred             CHHHHHHHHHHHHHHHHHHEEEEC----CCCCCC-CCCCCCCCCCEEEECCEEEEECCCCCEEEEEEECHH-HHCC-CCC
T ss_conf             525779999999999998505510----368765-565789999669753368889999978589997142-0131-379


Q ss_pred             EEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEEC--CC--CEEEEEEEEEEEEEEEEEECCCEEEE
Q ss_conf             499995689998168845679999345899735646999777799951--57--39998212799720389953858999
Q gi|254780746|r  100 IIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVK--DN--LRLDFETAVLDVKNITINSSDPVIIT  175 (215)
Q Consensus       100 ~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~--~G--~~l~t~~~~~d~~~~~i~s~~~V~~~  175 (215)
                      ...++.|...++..++ ...+.|+|++|.+..+ +.|.|.|+|.+..-  ++  -++.|+.+.+|+.+..+.|+.||.+.
T Consensus        75 ~T~F~~Pvl~ly~~~~-~~~W~VsA~~a~L~~d-~~L~L~gnV~i~~L~~~s~iq~I~T~~l~idL~tqd~~SD~~VtI~  152 (190)
T PRK10893         75 VSWFTQPVLTTFDKDK-VPTWSVKADKAKLTND-RMLYLYGHVEVNALTPDSQLRRITTDNAQINLVTQDVTSDDLVTLY  152 (190)
T ss_pred             CEEEECCEEEEECCCC-CCCEEEEECEEEECCC-CEEEEECCEEEEECCCCCCCCEEECCCEEEECCCCEEECCCEEEEE
T ss_conf             5898186599988999-5327999456798648-8899977799985389754538982758980466468638709998


Q ss_pred             ECCCEEEEEEEEEEECCCEEEEECCEEEEECHHHHC
Q ss_conf             077189970799992786899988969998311320
Q gi|254780746|r  176 HSDFVLSANFARIENSSRSAVFAGQVSVVVNPGVLQ  211 (215)
Q Consensus       176 ~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~~~  211 (215)
                      |+++..+|.||..+.+.+.+.+..+||..|+++..+
T Consensus       153 G~~f~s~G~gm~anL~~~~a~L~~~Vkt~YEi~~~~  188 (190)
T PRK10893        153 GTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQ  188 (190)
T ss_pred             CCCCEEEEEEEEEEHHHCEEEEHHHCCEEEECCCCC
T ss_conf             798399861089993658889045061999636003


No 4  
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64  E-value=1.2e-14  Score=101.55  Aligned_cols=176  Identities=16%  Similarity=0.196  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCCEEEEE
Q ss_conf             99999999999999987642003444445443134554305871108998849988-89999601133588987449999
Q gi|254780746|r   26 FLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKGIIFLQ  104 (215)
Q Consensus        26 ~lKi~Lpl~al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~~i~L~  104 (215)
                      |--++|-++|+.+++|+.+....   ........+.+. ..+|++..-.-++.+|. .|.++|... +... .++..+.+
T Consensus         6 w~~~ILll~a~~~~~w~~~~~~~---~~~~v~~~~d~p-~Y~~e~~~~~~~de~G~~~y~l~a~~~-eh~~-~~~~t~ft   79 (188)
T COG3117           6 WVYLILLLAALALSGWLLGLEQD---EIEQVRPNPDEP-AYTMEGLDTTVYDEQGKLKYRLTAQHV-EHYS-DSSDTHFT   79 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCC-CEEECCCCEEEECCCCCEEEEEEHHHH-HHCC-CCCCEEEE
T ss_conf             99999999999999987620135---524410499986-402057423677777605677632345-4154-56655771


Q ss_pred             EEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEEC-CC---CEEEEEEEEEEEEEEEEEECCCEEEEECCCE
Q ss_conf             5689998168845679999345899735646999777799951-57---3999821279972038995385899907718
Q gi|254780746|r  105 DFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVK-DN---LRLDFETAVLDVKNITINSSDPVIITHSDFV  180 (215)
Q Consensus       105 ~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~-~G---~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~  180 (215)
                      .|...++-.+  ...++++|++|.++.+...+.+..+|+.... +.   -.++|+++.+++++..+.++.||++.++.+.
T Consensus        80 ~P~l~lf~e~--~q~w~v~Ad~a~l~~d~~l~l~~~vvv~~~t~d~~q~~~l~T~~~~V~l~tqd~~te~~V~l~~~~~~  157 (188)
T COG3117          80 APVLTLFREN--RQTWTVQADRAKLTKDGKLYLLGDVVVVALTPDSGQLQRLTTESAQVNLKTQDAQTEDPVTLYGGQFV  157 (188)
T ss_pred             CCEEEEECCC--CCCEEEEHHHHEECCCCEEEEEECEEEEEECCCCCCCCEEEEEEEEECCCCCCEECCCCEEEECCCCC
T ss_conf             5359988388--76279981020215785599871206775147766764587102376133100003775667435440


Q ss_pred             EEEEEEEEEECCCEEEEECCEEEEECHHH
Q ss_conf             99707999927868999889699983113
Q gi|254780746|r  181 LSANFARIENSSRSAVFAGQVSVVVNPGV  209 (215)
Q Consensus       181 i~A~~m~i~~~~~~i~F~g~V~l~i~p~~  209 (215)
                      -+|.+|..+.+.+.+.|.++||..|++..
T Consensus       158 ~tg~gm~~n~k~~~a~L~~kV~t~yE~~~  186 (188)
T COG3117         158 STANGMTGNLKTQQANLLSKVRTRYEVLK  186 (188)
T ss_pred             CCCCCEEEEHHHHHHHHHHCCCCEEEECC
T ss_conf             23201477546556664212451787246


No 5  
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70  E-value=1.9e-06  Score=55.27  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             CEEEEEECCCCC-EEEEEEEEEEECCCCCCC--EEEEEEEEEEEE--ECCCCEEEEEEEEEEEEEECCCCEEEEECCEEE
Q ss_conf             108998849988-899996011335889874--499995689998--168845679999345899735646999777799
Q gi|254780746|r   70 KFILSDYSKDRV-KYSLVAERAKTSFNSGKG--IIFLQDFELTVP--TQRSEYGDMYLFAHSARFNLANHTLYISQPFKM  144 (215)
Q Consensus        70 ~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~--~i~L~~v~a~i~--~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i  144 (215)
                      ..+|+|...=.+ +..+.|++..-..+.+.+  .+....=.+.+.  ...|+  .+.-+|+++.|+..++++.|+|++.+
T Consensus        48 ~a~ftGNV~i~qG~~~l~Adkv~v~~~~~~~~~~i~a~gn~~~~~q~~~~~k--~~~g~ad~~~Y~~~~~~~vLtGna~v  125 (173)
T COG1934          48 VATFTGNVVVTQGTITLRADKVTVTRDKEGGKEVIEANGNPATFSQKVDNGK--TQKGTADQAIYDLKNDTIVLTGNAYV  125 (173)
T ss_pred             EEEEECCEEEEECCCEEEEEEEEEECCCCCCCEEEEEECCEEEEEEEECCCC--CEEEEEEEEEEEECCCEEEEECCEEE
T ss_conf             7999763899846617971369998057898548999546667887650785--03888516999820789999477999


Q ss_pred             EECCCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHHHHCCC
Q ss_conf             951573999821279972038995385899907718997079999278689998896999831132012
Q gi|254780746|r  145 KVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPGVLQKK  213 (215)
Q Consensus       145 ~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~~~~~  213 (215)
                      .... -.++.+.++|+.+++.+..++.                         =.++|+++|.|...+++
T Consensus       126 ~q~g-n~i~G~kIty~~~~~~~~a~~~-------------------------~~~RV~~V~~p~~~q~~  168 (173)
T COG1934         126 LQLG-NVIRGDKITYLTKTGRAVAESS-------------------------KGGRVRTVLDPEDSQQK  168 (173)
T ss_pred             EECC-CEEEEEEEEEECCCCEEEECCC-------------------------CCCCEEEEECCHHCCCC
T ss_conf             8579-8887639999943457996288-------------------------99847999880552644


No 6  
>pfam03968 OstA OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.
Probab=98.70  E-value=7.9e-07  Score=57.38  Aligned_cols=44  Identities=9%  Similarity=0.073  Sum_probs=27.6

Q ss_pred             EEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEE
Q ss_conf             999934589973564699977779995157399982127997203
Q gi|254780746|r  120 MYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNI  164 (215)
Q Consensus       120 i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~  164 (215)
                      +..+|+.+.|+..++.+.|.||+++... +-.+..+.+.||+++|
T Consensus        97 ~~a~a~~~~Y~~~~~~i~L~Gna~l~q~-~n~i~G~~I~ydl~~g  140 (141)
T pfam03968        97 IRGTADRAEYDSKKRIIVLTGNAVLTQG-GNSIRGDKITYDIKEG  140 (141)
T ss_pred             EEEEEEEEEEEECCCEEEEECCEEEEEC-CCEEEECEEEEECCCC
T ss_conf             7999718999916999999733999989-9999968999997679


No 7  
>pfam06835 DUF1239 Protein of unknown function (DUF1239). This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown.
Probab=98.67  E-value=3.2e-06  Score=53.94  Aligned_cols=106  Identities=13%  Similarity=0.086  Sum_probs=87.2

Q ss_pred             EEEECEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEE-EEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEE
Q ss_conf             5871108998849988899996011335889874499995-689998168845679999345899735646999777799
Q gi|254780746|r   66 MIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQD-FELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKM  144 (215)
Q Consensus        66 ~~m~~P~~~G~~~~g~~~~itA~~A~~~~~~~~~~i~L~~-v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i  144 (215)
                      ..+++|++.-++.+|.+|.++|++|.-..  +.+.+.|.+ |.+.-  ..+......+.++.-.|+..++.+.=..+|++
T Consensus        69 ~~l~~P~~~~~~~~~~~w~i~A~~g~~~~--~~~~i~L~g~V~i~~--~~~~~~~~~l~T~~l~~~~~~~~~~td~~V~i  144 (176)
T pfam06835        69 TEFTNPVLIIYQDGKPPWTITADRAKLNK--DGQTLYLYGNVVIQS--LEDKSRLTTITTENLTVNLDTQDASTDQPVTI  144 (176)
T ss_pred             EEEEEEEEEEECCCCCEEEEEECEEEEEC--CCCEEEEECCEEEEE--CCCCCCCEEEEEHEEEEECCCCEEEECCCEEE
T ss_conf             89996399997799836999979499937--996999989999997--68998756999220999947779994874999


Q ss_pred             EECCCCEEEEEEEEEEEEEEEEEECCCEEEEE
Q ss_conf             95157399982127997203899538589990
Q gi|254780746|r  145 KVKDNLRLDFETAVLDVKNITINSSDPVIITH  176 (215)
Q Consensus       145 ~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~  176 (215)
                      ...+ ..++...+.+|++++.+.-.+.|.+..
T Consensus       145 ~~~~-~~~~g~gm~~~l~~~~~~l~~~Vr~~y  175 (176)
T pfam06835       145 TGPN-FVSTGTGMKANLKTGTAELLSNVRGRY  175 (176)
T ss_pred             EECC-CEEEEEEEEEECCCCEEEEECCCEEEE
T ss_conf             9099-799988899997589999943616995


No 8  
>PRK10894 hypothetical protein; Provisional
Probab=98.59  E-value=9.7e-06  Score=51.23  Aligned_cols=116  Identities=14%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             EEEEEECC-CCCEEEEEEEEEEECCCC-CCCE--EEEEEEEEEEE--ECCCCEEEEEEEEEEEEEECCCCEEEEECCEEE
Q ss_conf             08998849-988899996011335889-8744--99995689998--168845679999345899735646999777799
Q gi|254780746|r   71 FILSDYSK-DRVKYSLVAERAKTSFNS-GKGI--IFLQDFELTVP--TQRSEYGDMYLFAHSARFNLANHTLYISQPFKM  144 (215)
Q Consensus        71 P~~~G~~~-~g~~~~itA~~A~~~~~~-~~~~--i~L~~v~a~i~--~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i  144 (215)
                      ..|+|.-. .-....|+|++..-..+. ..+.  +...+=-|.+.  ..+|++  +.-.|++..|+..++.+.|.||..+
T Consensus        52 avytGNVvitQGsl~I~ADkv~v~~~~~~~~~~~i~a~G~pA~f~Q~~~~g~~--i~a~A~~i~Y~~~~~~i~L~GnA~L  129 (184)
T PRK10894         52 VTFTGNVVVTQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNGKP--VKGHASKMHYELAKDFVVLTGNAYL  129 (184)
T ss_pred             EEEEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCC--EEEEEEEEEEECCCCEEEEECCEEE
T ss_conf             99992599996259999358999976997537999996893799996568981--3769748999826999999765899


Q ss_pred             EECCCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHHHHCCCC
Q ss_conf             9515739998212799720389953858999077189970799992786899988969998311320125
Q gi|254780746|r  145 KVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPGVLQKKE  214 (215)
Q Consensus       145 ~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~~~~~~  214 (215)
                      .... -.+..+.+.||++++.+...+      .             +      .++|++++.|...+++.
T Consensus       130 ~Q~~-~~v~G~~I~Ydl~~~~~~a~s------~-------------~------~~RV~~vi~P~~~~~k~  173 (184)
T PRK10894        130 EQLD-SNIKGDKITYLVKEQKMQAFS------D-------------K------GKRVTTVLVPSQLQDKN  173 (184)
T ss_pred             EECC-CEEEECEEEEEECCCEEEEEC------C-------------C------CCEEEEEECCCCCCCCC
T ss_conf             9689-989937899990667999967------9-------------9------98079998940158655


No 9  
>COG1452 Imp Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]
Probab=98.49  E-value=9.2e-06  Score=51.37  Aligned_cols=122  Identities=9%  Similarity=0.084  Sum_probs=91.9

Q ss_pred             CCCCE-EEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEE
Q ss_conf             99888-99996011335889874499995689998168845679999345899735646999777799951573999821
Q gi|254780746|r   78 KDRVK-YSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFET  156 (215)
Q Consensus        78 ~~g~~-~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~  156 (215)
                      ..+.| +.+.|+.+.-+  .+.++|..++ .+.|  ..|.   .+|.|++-.||++++.+...|||.+...+|..+.++.
T Consensus        47 ~~~~p~~~iea~~~~~~--~~~~~ita~G-nV~i--~~~~---~~l~Ad~v~y~q~t~~~~A~GnV~~~~~~g~~i~gd~  118 (784)
T COG1452          47 EQNLPKILIEADALEYN--RKDQIITAEG-NVEI--LYGD---YRLLADKVDYDQKTDRVTATGNVEYIDGDGILIKGDK  118 (784)
T ss_pred             CCCCCCEEEEHHHHCCC--CCCCEEEEEC-EEEE--EECC---EEEEEEEEEEECCCCEEEEECCEEEECCCCCEEECCE
T ss_conf             45698458980020014--7785699966-2999--9688---8998758997234788999777999828980998756


Q ss_pred             EEEEEEEEEEEECC-CEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHH
Q ss_conf             27997203899538-58999077189970799992786899988969998311
Q gi|254780746|r  157 AVLDVKNITINSSD-PVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPG  208 (215)
Q Consensus       157 ~~~d~~~~~i~s~~-~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~  208 (215)
                      +.++++.+...-.. -++..+..+.+.|+.++..+ ++...++.++-+.-.|.
T Consensus       119 a~~~ld~~~g~~~n~~~~~~~~~~~~~A~~a~~~d-~~~~~l~~at~TtC~~~  170 (784)
T COG1452         119 ADVNLDTKKGFVSNFRYQTVGRQGRFVAKSAERRD-NDVTILKNATYTTCEPC  170 (784)
T ss_pred             EEEECCCCCCEEEEEEEEECCCEEEEEEEEEEECC-CEEEEEEEEEEECCCCC
T ss_conf             89961457645860089852522579985522148-70699951088236888


No 10 
>COG1452 Imp Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]
Probab=98.39  E-value=4e-06  Score=53.41  Aligned_cols=78  Identities=12%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             EEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEE-CCCEEEEEEEEEEECCCEEEEE
Q ss_conf             999934589973564699977779995157399982127997203899538589990-7718997079999278689998
Q gi|254780746|r  120 MYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITH-SDFVLSANFARIENSSRSAVFA  198 (215)
Q Consensus       120 i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~-~~g~i~A~~m~i~~~~~~i~F~  198 (215)
                      +.|.|+.-.|+.+.+.+.+.|||.|.+++ +.+.++++.||.+++.+...|+|++.. .+..|.|+.+.++++.+.-.+.
T Consensus        53 ~~iea~~~~~~~~~~~ita~GnV~i~~~~-~~l~Ad~v~y~q~t~~~~A~GnV~~~~~~g~~i~gd~a~~~ld~~~g~~~  131 (784)
T COG1452          53 ILIEADALEYNRKDQIITAEGNVEILYGD-YRLLADKVDYDQKTDRVTATGNVEYIDGDGILIKGDKADVNLDTKKGFVS  131 (784)
T ss_pred             EEEEHHHHCCCCCCCEEEEECEEEEEECC-EEEEEEEEEEECCCCEEEEECCEEEECCCCCEEECCEEEEECCCCCCEEE
T ss_conf             58980020014778569996629999688-89987589972347889997779998289809987568996145764586


No 11 
>PRK03761 organic solvent tolerance protein; Provisional
Probab=98.36  E-value=5.6e-05  Score=46.93  Aligned_cols=127  Identities=9%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             CEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCC------EEEEECCEE
Q ss_conf             10899884998889999601133588987449999568999816884567999934589973564------699977779
Q gi|254780746|r   70 KFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANH------TLYISQPFK  143 (215)
Q Consensus        70 ~P~~~G~~~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~------~l~L~g~V~  143 (215)
                      .|..+| +.+..|..|.|+++.-.   .++.+.++   +.+.+..|.   ..|.|++..|++.++      .+...|||.
T Consensus        40 ~~~~~~-~~~~~pi~i~AD~~~~~---~~~~~~~~---GnV~i~~g~---~~l~Ad~v~~~q~~~~~~~~~~~~a~Gnv~  109 (782)
T PRK03761         40 RPLVTG-DPNDLPVTINADNAEAN---YPDKAVYT---GNVDIKQGN---SRLQADEVQLHQQEAPGEPVRTVDAEGNVH  109 (782)
T ss_pred             CCCCCC-CCCCCCEEEEECCEEEC---CCCEEEEE---EEEEEEECC---EEEECCEEEEECCCCCCCCCEEEEEECCEE
T ss_conf             674269-98888479993324625---89779999---339999799---899956799952378666502899868989


Q ss_pred             EEECCCCEEEEEEEEEEEEEEEEEECCC-EEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECH
Q ss_conf             9951573999821279972038995385-899907718997079999278689998896999831
Q gi|254780746|r  144 MKVKDNLRLDFETAVLDVKNITINSSDP-VIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNP  207 (215)
Q Consensus       144 i~~~~G~~l~t~~~~~d~~~~~i~s~~~-V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p  207 (215)
                      +. +.+..+..+.+.+++.......... ..+.+..+.-.|+.+....+++..+|++++-+.-.|
T Consensus       110 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~~g~A~~~~~~~~~~~~~l~~~~yTtC~p  173 (782)
T PRK03761        110 YD-DNQIILKGPKAWSNLNTKDTNVWNGDYQMVGRQGRGKADLMKQRGENRYTILENGSFTSCLP  173 (782)
T ss_pred             EE-CCCEEEEECEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCEEEECCEEECCCCC
T ss_conf             96-89618981469995377645996248999737860470025991798489981718830899


No 12 
>PRK03761 organic solvent tolerance protein; Provisional
Probab=98.34  E-value=1.2e-05  Score=50.66  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             EEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEE------EEEECCCEEEEECCCEEEEEEEEEEECC
Q ss_conf             7999934589973564699977779995157399982127997203------8995385899907718997079999278
Q gi|254780746|r  119 DMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNI------TINSSDPVIITHSDFVLSANFARIENSS  192 (215)
Q Consensus       119 ~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~------~i~s~~~V~~~~~~g~i~A~~m~i~~~~  192 (215)
                      +|+|.|++..++. .+.+.++|||.|...+ ..|.++++.++-+++      ++...|+|.+..|...+.|+++.++.+.
T Consensus        51 pi~i~AD~~~~~~-~~~~~~~GnV~i~~g~-~~l~Ad~v~~~q~~~~~~~~~~~~a~Gnv~~~~~~~~~~g~~~~~~~~~  128 (782)
T PRK03761         51 PVTINADNAEANY-PDKAVYTGNVDIKQGN-SRLQADEVQLHQQEAPGEPVRTVDAEGNVHYDDNQIILKGPKAWSNLNT  128 (782)
T ss_pred             CEEEEECCEEECC-CCEEEEEEEEEEEECC-EEEECCEEEEECCCCCCCCCEEEEEECCEEEECCCEEEEECEEEEECCC
T ss_conf             4799933246258-9779999339999799-8999567999523786665028998689899689618981469995377


Q ss_pred             CEEEEE
Q ss_conf             689998
Q gi|254780746|r  193 RSAVFA  198 (215)
Q Consensus       193 ~~i~F~  198 (215)
                      +...+.
T Consensus       129 ~~~~~~  134 (782)
T PRK03761        129 KDTNVW  134 (782)
T ss_pred             CEEEEE
T ss_conf             645996


No 13 
>PRK04423 organic solvent tolerance protein; Provisional
Probab=98.20  E-value=0.00024  Score=43.38  Aligned_cols=119  Identities=8%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEE
Q ss_conf             49988899996011335889874499995689998168845679999345899735646999777799951573999821
Q gi|254780746|r   77 SKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFET  156 (215)
Q Consensus        77 ~~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~  156 (215)
                      .....|..|.|++.. -   .+++.   ..++.+.+..|.   -.|.|++..||+.++.+...|||.+. +.|..+..+.
T Consensus        54 ~~~~~p~~v~aD~~~-~---~~~~~---~f~GnV~i~qg~---~~l~AD~v~ydq~~~~v~A~GnV~~~-~~~~~~~g~~  122 (798)
T PRK04423         54 MRQQLPTDIEGDQLS-G---TSTTP---QYQGNVALKRGD---QFLGADNLRMDTETGNYIAEGNVRYQ-DTSIRMVADR  122 (798)
T ss_pred             CCCCCCEEEECCCCC-C---CCCCC---EEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCEEEE-CCCCEEECCE
T ss_conf             455698588764023-5---57751---798559999799---89991179998678989997778996-7985898142


Q ss_pred             EEEEEEEEEEEECCCE-EEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHH
Q ss_conf             2799720389953858-999077189970799992786899988969998311
Q gi|254780746|r  157 AVLDVKNITINSSDPV-IITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPG  208 (215)
Q Consensus       157 ~~~d~~~~~i~s~~~V-~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~  208 (215)
                      +.++++.+.....++- ......+.-.|..+++  .++...++.+.-+.-.|+
T Consensus       123 ~~~~l~~~~g~~~~~~y~l~~~~~~G~A~~~~~--~g~~~~l~~~~~ttC~~~  173 (798)
T PRK04423        123 AEGNQDTDTHKITNIQYQLVERRGNGDAESVDL--QGQVGQMHRSTYTTCDPS  173 (798)
T ss_pred             EEEECCCCEEEEECCEEEEEECCCCEEEEEEEE--CCCEEEEECCEECCCCCC
T ss_conf             899826764799667899994677236677674--486479957198328988


No 14 
>pfam03968 OstA OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.
Probab=98.19  E-value=0.00036  Score=42.34  Aligned_cols=88  Identities=10%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             EEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEE-----EEEECCCEEE------EECCCEEEEEEEE
Q ss_conf             7999934589973564699977779995157399982127997203-----8995385899------9077189970799
Q gi|254780746|r  119 DMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNI-----TINSSDPVII------THSDFVLSANFAR  187 (215)
Q Consensus       119 ~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~-----~i~s~~~V~~------~~~~g~i~A~~m~  187 (215)
                      +|.|+|+...++..++...++|||.+...+ +.++++.+.+..+++     .+...+|+..      .++...-+|+.+.
T Consensus        27 PI~I~AD~~~~d~~~~~~~~~GnV~i~QG~-~~i~ad~~~i~~~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~a~a~~~~  105 (141)
T pfam03968        27 PIEIEADNLEADDKKGVATFTGNVVVTQGS-ITLRADKVVVTQDKKSNGIERLEATGPATFRQKVDLVGRQIRGTADRAE  105 (141)
T ss_pred             CEEEEEEEEEEECCCCEEEEECCEEEEECC-EEEEEEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCEEEEEEEEE
T ss_conf             989994579998279999998749998087-0999648999986888967999997760499986148886799971899


Q ss_pred             EEECCCEEEEECCEEEEECH
Q ss_conf             99278689998896999831
Q gi|254780746|r  188 IENSSRSAVFAGQVSVVVNP  207 (215)
Q Consensus       188 i~~~~~~i~F~g~V~l~i~p  207 (215)
                      ++...+.+.|+|+|++.-..
T Consensus       106 Y~~~~~~i~L~Gna~l~q~~  125 (141)
T pfam03968       106 YDSKKRIIVLTGNAVLTQGG  125 (141)
T ss_pred             EEECCCEEEEECCEEEEECC
T ss_conf             99169999997339999899


No 15 
>PRK10894 hypothetical protein; Provisional
Probab=98.18  E-value=5.5e-05  Score=46.98  Aligned_cols=115  Identities=3%  Similarity=-0.028  Sum_probs=80.1

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECC-----CCEEEEECC-EEEEE--CCC
Q ss_conf             9988899996011335889874499995689998168845679999345899735-----646999777-79995--157
Q gi|254780746|r   78 KDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLA-----NHTLYISQP-FKMKV--KDN  149 (215)
Q Consensus        78 ~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~-----~~~l~L~g~-V~i~~--~~G  149 (215)
                      +..+|+.|.|+++.-|...  ++...   .+.+.+.-|+   +.|.|++-+....     ...+.-.|+ +....  ++|
T Consensus        31 D~~qPI~I~AD~~~~d~~~--~~avy---tGNVvitQGs---l~I~ADkv~v~~~~~~~~~~~i~a~G~pA~f~Q~~~~g  102 (184)
T PRK10894         31 DTEQPIHIDSDQQSLDMQG--NVVTF---TGNVVVTQGT---IKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNG  102 (184)
T ss_pred             CCCCCEEEEECEEEEECCC--CEEEE---EEEEEEEEEE---EEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCC
T ss_conf             4469989994528943159--98999---9259999625---99993589999769975379999968937999965689


Q ss_pred             --CEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECC
Q ss_conf             --399982127997203899538589990771899707999927868999889
Q gi|254780746|r  150 --LRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQ  200 (215)
Q Consensus       150 --~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~  200 (215)
                        +..+++.+.|+.+++.+...+...++.....++++.+.++.+.+++.-.|+
T Consensus       103 ~~i~a~A~~i~Y~~~~~~i~L~GnA~L~Q~~~~v~G~~I~Ydl~~~~~~a~s~  155 (184)
T PRK10894        103 KPVKGHASKMHYELAKDFVVLTGNAYLEQLDSNIKGDKITYLVKEQKMQAFSD  155 (184)
T ss_pred             CCEEEEEEEEEEECCCCEEEEECCEEEEECCCEEEECEEEEEECCCEEEEECC
T ss_conf             81376974899982699999976589996899899378999906679999679


No 16 
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10  E-value=0.00015  Score=44.57  Aligned_cols=81  Identities=14%  Similarity=0.055  Sum_probs=59.0

Q ss_pred             EEEEEEEEEEEC--CCC--EEEEECC----EEEEEC-CCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEE
Q ss_conf             999934589973--564--6999777----799951-5739998212799720389953858999077189970799992
Q gi|254780746|r  120 MYLFAHSARFNL--ANH--TLYISQP----FKMKVK-DNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIEN  190 (215)
Q Consensus       120 i~i~A~~G~y~~--~~~--~l~L~g~----V~i~~~-~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~  190 (215)
                      +.|.|++-.+..  ...  .+...|+    +...+. .-+..+.+.+.|+++++++...+++.+...+..|+|+.|.+..
T Consensus        62 ~~l~Adkv~v~~~~~~~~~~i~a~gn~~~~~q~~~~~k~~~g~ad~~~Y~~~~~~~vLtGna~v~q~gn~i~G~kIty~~  141 (173)
T COG1934          62 ITLRADKVTVTRDKEGGKEVIEANGNPATFSQKVDNGKTQKGTADQAIYDLKNDTIVLTGNAYVLQLGNVIRGDKITYLT  141 (173)
T ss_pred             CEEEEEEEEEECCCCCCCEEEEEECCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEECCEEEEECCCEEEEEEEEEEC
T ss_conf             17971369998057898548999546667887650785038885169998207899994779998579888763999994


Q ss_pred             CCCEEEEECC
Q ss_conf             7868999889
Q gi|254780746|r  191 SSRSAVFAGQ  200 (215)
Q Consensus       191 ~~~~i~F~g~  200 (215)
                      +.+.+.-.+.
T Consensus       142 ~~~~~~a~~~  151 (173)
T COG1934         142 KTGRAVAESS  151 (173)
T ss_pred             CCCEEEECCC
T ss_conf             3457996288


No 17 
>TIGR03002 outer_YhbN cell envelope biogenesis protein YhbN; InterPro: IPR014340   Members of this entry include YhbN, which is an essential protein in Escherichia coli. It is implicated in cell envelope integrity, and has numerous homologues in other Proteobacteria in a conserved location near lipopolysaccharide inner core biosynthesis genes. This entry is distantly related to the organic solvent tolerance protein (OstA)..
Probab=98.00  E-value=0.00029  Score=42.90  Aligned_cols=123  Identities=7%  Similarity=0.085  Sum_probs=81.6

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEC--CCC---EEEEECC--EEEEE--C-
Q ss_conf             998889999601133588987449999568999816884567999934589973--564---6999777--79995--1-
Q gi|254780746|r   78 KDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNL--ANH---TLYISQP--FKMKV--K-  147 (215)
Q Consensus        78 ~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~--~~~---~l~L~g~--V~i~~--~-  147 (215)
                      +..+|+.|.|+++.-|..+  +++..   .+.+.+.-|+   +.|+|++=+...  ..+   .+.-+|+  +....  + 
T Consensus         5 D~~qPi~I~Ad~~~~D~~~--~~~~f---~GnV~itQG~---~~I~ADkv~v~~~~~~~~~~~~~A~G~~PA~F~q~~d~   76 (150)
T TIGR03002         5 DREQPIEIEADSQTLDDKK--NVVTF---TGNVVITQGT---LKIRADKVVVTRPNDGGGIEKATATGNKPATFRQKLDD   76 (150)
T ss_pred             CCCCCEEEEEEEEEEECCC--CEEEE---ECCEEEEECC---EEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEEECC
T ss_conf             7568689994006654028--83888---6565878297---59852288988268878608999980781898899559


Q ss_pred             -CC-CEEEEEEEEEEEEEEEEEECCCEEEEECC-CEEEEEEEEEEECCCEEEE----E------CCEEEEECHH
Q ss_conf             -57-39998212799720389953858999077-1899707999927868999----8------8969998311
Q gi|254780746|r  148 -DN-LRLDFETAVLDVKNITINSSDPVIITHSD-FVLSANFARIENSSRSAVF----A------GQVSVVVNPG  208 (215)
Q Consensus       148 -~G-~~l~t~~~~~d~~~~~i~s~~~V~~~~~~-g~i~A~~m~i~~~~~~i~F----~------g~V~l~i~p~  208 (215)
                       +. +.-.++.+.|+..+..+...+.-.+...+ ..++|+.+.++...+.+.-    .      ++|+++|.|+
T Consensus        77 g~~~~~g~A~~i~Y~~~~~~~~Ltg~A~v~Q~~k~~~~G~~I~Y~~~~q~~~a~~~~~~~~~~~~RV~~ii~P~  150 (150)
T TIGR03002        77 GKEYIEGQANRIEYDPAKDTVVLTGNARVKQGGKNEVSGDVITYDTKKQKVTAKGGGGSAKGASGRVTTIIQPK  150 (150)
T ss_pred             CCEEEEEECCEEEEECCCCEEEEECCEEEEECCCCEEECCEEEEECEEEEEEEEECCCCCCCCCCCEEEEEECC
T ss_conf             98279997118999325779999123499788977787668898440129989807888998697179998409


No 18 
>TIGR03002 outer_YhbN cell envelope biogenesis protein YhbN; InterPro: IPR014340   Members of this entry include YhbN, which is an essential protein in Escherichia coli. It is implicated in cell envelope integrity, and has numerous homologues in other Proteobacteria in a conserved location near lipopolysaccharide inner core biosynthesis genes. This entry is distantly related to the organic solvent tolerance protein (OstA)..
Probab=97.91  E-value=0.0013  Score=39.29  Aligned_cols=94  Identities=10%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             EEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEE--EE---EEEEECCC--EEEEE----CC--CEEEE
Q ss_conf             567999934589973564699977779995157399982127997--20---38995385--89990----77--18997
Q gi|254780746|r  117 YGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDV--KN---ITINSSDP--VIITH----SD--FVLSA  183 (215)
Q Consensus       117 ~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~--~~---~~i~s~~~--V~~~~----~~--g~i~A  183 (215)
                      ..+|+|.|+...+|..++...|+|||.|+-.+ +.+.++.+.+.-  +.   ..+.+.|.  +.+..    ..  ..=.|
T Consensus         7 ~qPi~I~Ad~~~~D~~~~~~~f~GnV~itQG~-~~I~ADkv~v~~~~~~~~~~~~~A~G~~PA~F~q~~d~g~~~~~g~A   85 (150)
T TIGR03002         7 EQPIEIEADSQTLDDKKNVVTFTGNVVITQGT-LKIRADKVVVTRPNDGGGIEKATATGNKPATFRQKLDDGKEYIEGQA   85 (150)
T ss_pred             CCCEEEEEEEEEEECCCCEEEEECCEEEEECC-EEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEEC
T ss_conf             68689994006654028838886565878297-59852288988268878608999980781898899559982799971


Q ss_pred             EEEEEEECCCEEEEECCEEEEECH-HHHC
Q ss_conf             079999278689998896999831-1320
Q gi|254780746|r  184 NFARIENSSRSAVFAGQVSVVVNP-GVLQ  211 (215)
Q Consensus       184 ~~m~i~~~~~~i~F~g~V~l~i~p-~~~~  211 (215)
                      +.|+++...+.++++|+.++.=.. +.++
T Consensus        86 ~~i~Y~~~~~~~~Ltg~A~v~Q~~k~~~~  114 (150)
T TIGR03002        86 NRIEYDPAKDTVVLTGNARVKQGGKNEVS  114 (150)
T ss_pred             CEEEEECCCCEEEEECCEEEEECCCCEEE
T ss_conf             18999325779999123499788977787


No 19 
>PRK04423 organic solvent tolerance protein; Provisional
Probab=97.84  E-value=0.00024  Score=43.36  Aligned_cols=79  Identities=10%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             EEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEE
Q ss_conf             67999934589973564699977779995157399982127997203899538589990771899707999927868999
Q gi|254780746|r  118 GDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVF  197 (215)
Q Consensus       118 ~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F  197 (215)
                      .++.|.|++-.-..  +...++|||.|...+ -.+.++.+.||-+++.+...|+|.+..++..+.|+.+++..+.+...+
T Consensus        58 ~p~~v~aD~~~~~~--~~~~f~GnV~i~qg~-~~l~AD~v~ydq~~~~v~A~GnV~~~~~~~~~~g~~~~~~l~~~~g~~  134 (798)
T PRK04423         58 LPTDIEGDQLSGTS--TTPQYQGNVALKRGD-QFLGADNLRMDTETGNYIAEGNVRYQDTSIRMVADRAEGNQDTDTHKI  134 (798)
T ss_pred             CCEEEECCCCCCCC--CCCEEEEEEEEEECC-EEEEEEEEEEECCCCEEEEECCEEEECCCCEEECCEEEEECCCCEEEE
T ss_conf             98588764023557--751798559999799-899911799986789899977789967985898142899826764799


Q ss_pred             EC
Q ss_conf             88
Q gi|254780746|r  198 AG  199 (215)
Q Consensus       198 ~g  199 (215)
                      .+
T Consensus       135 ~~  136 (798)
T PRK04423        135 TN  136 (798)
T ss_pred             EC
T ss_conf             66


No 20 
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34  E-value=0.0085  Score=34.60  Aligned_cols=152  Identities=14%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------CCCC----------------CCEEEEECEEE
Q ss_conf             68899999999999999999876420034444454431-----------3455----------------43058711089
Q gi|254780746|r   21 VRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSI-----------DLLD----------------FEPMIMKKFIL   73 (215)
Q Consensus        21 Sr~V~~lKi~Lpl~al~i~~~~~~~~~~~~~~~~~~~~-----------~~~~----------------~~~~~m~~P~~   73 (215)
                      .|+|...-.++-++.++..+...-..........+.+.           ++.-                ....-.+.|.+
T Consensus         4 ~Rw~~~ILll~a~~~~~w~~~~~~~~~~~v~~~~d~p~Y~~e~~~~~~~de~G~~~y~l~a~~~eh~~~~~~t~ft~P~l   83 (188)
T COG3117           4 RRWVYLILLLAALALSGWLLGLEQDEIEQVRPNPDEPAYTMEGLDTTVYDEQGKLKYRLTAQHVEHYSDSSDTHFTAPVL   83 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEEEEEEHHHHHHCCCCCCEEEECCEE
T ss_conf             52999999999999999876201355244104999864020574236777776056776323454154566557715359


Q ss_pred             EEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEE
Q ss_conf             98849988899996011335889874499995689998168845679999345899735646999777799951573999
Q gi|254780746|r   74 SDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLD  153 (215)
Q Consensus        74 ~G~~~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~  153 (215)
                      .=++.+.++|.++|++|.-.  ++..++.+.++...-...+.. ..-.++.++...+.+++.+.-...|+|+.. +...+
T Consensus        84 ~lf~e~~q~w~v~Ad~a~l~--~d~~l~l~~~vvv~~~t~d~~-q~~~l~T~~~~V~l~tqd~~te~~V~l~~~-~~~~t  159 (188)
T COG3117          84 TLFRENRQTWTVQADRAKLT--KDGKLYLLGDVVVVALTPDSG-QLQRLTTESAQVNLKTQDAQTEDPVTLYGG-QFVST  159 (188)
T ss_pred             EEECCCCCCEEEEHHHHEEC--CCCEEEEEECEEEEEECCCCC-CCCEEEEEEEEECCCCCCEECCCCEEEECC-CCCCC
T ss_conf             98838876279981020215--785599871206775147766-764587102376133100003775667435-44023


Q ss_pred             EEEEEEEEEEEEEEECCCEEEEE
Q ss_conf             82127997203899538589990
Q gi|254780746|r  154 FETAVLDVKNITINSSDPVIITH  176 (215)
Q Consensus       154 t~~~~~d~~~~~i~s~~~V~~~~  176 (215)
                      ...+.++++.+.+...++|...-
T Consensus       160 g~gm~~n~k~~~a~L~~kV~t~y  182 (188)
T COG3117         160 ANGMTGNLKTQQANLLSKVRTRY  182 (188)
T ss_pred             CCCEEEEHHHHHHHHHHCCCCEE
T ss_conf             20147754655666421245178


No 21 
>PRK10893 hypothetical protein; Provisional
Probab=97.27  E-value=0.0098  Score=34.24  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=82.9

Q ss_pred             EEECEEEEEECCCCCE-EEEEEEEEEECCCCCCCEEEEE-EEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEE
Q ss_conf             8711089988499888-9999601133588987449999-5689998168845679999345899735646999777799
Q gi|254780746|r   67 IMKKFILSDYSKDRVK-YSLVAERAKTSFNSGKGIIFLQ-DFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKM  144 (215)
Q Consensus        67 ~m~~P~~~G~~~~g~~-~~itA~~A~~~~~~~~~~i~L~-~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i  144 (215)
                      ..++|.|.=++.++.+ |.|+|++|.=.  . ++.+.|. +|.++-...++..  -.|+.+....|..++.+.-...|.|
T Consensus        77 ~F~~Pvl~ly~~~~~~~W~VsA~~a~L~--~-d~~L~L~gnV~i~~L~~~s~i--q~I~T~~l~idL~tqd~~SD~~VtI  151 (190)
T PRK10893         77 WFTQPVLTTFDKDKVPTWSVKADKAKLT--N-DRMLYLYGHVEVNALTPDSQL--RRITTDNAQINLVTQDVTSDDLVTL  151 (190)
T ss_pred             EEECCEEEEECCCCCCCEEEEECEEEEC--C-CCEEEEECCEEEEECCCCCCC--CEEECCCEEEECCCCEEECCCEEEE
T ss_conf             9818659998899953279994567986--4-888999777999853897545--3898275898046646863870999


Q ss_pred             EECCCCEEEEEEEEEEEEEEEEEECCCEEEEEC
Q ss_conf             951573999821279972038995385899907
Q gi|254780746|r  145 KVKDNLRLDFETAVLDVKNITINSSDPVIITHS  177 (215)
Q Consensus       145 ~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~  177 (215)
                      . ..|+..+...+..|+++..+..-+.|...-.
T Consensus       152 ~-G~~f~s~G~gm~anL~~~~a~L~~~Vkt~YE  183 (190)
T PRK10893        152 Y-GTTFNSSGLKMRGNLRSKNAELIEKVRTSYE  183 (190)
T ss_pred             E-CCCCEEEEEEEEEEHHHCEEEEHHHCCEEEE
T ss_conf             8-7983998610899936588890450619996


No 22 
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89  E-value=0.41  Score=25.07  Aligned_cols=105  Identities=11%  Similarity=0.027  Sum_probs=79.9

Q ss_pred             EEEECEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEE
Q ss_conf             58711089988499888999960113358898744999956899981688456799993458997356469997777999
Q gi|254780746|r   66 MIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMK  145 (215)
Q Consensus        66 ~~m~~P~~~G~~~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~  145 (215)
                      ++++.|.-.=--.+-++-.++|.+.+-|-  +.++..|+++- ++.+.+|    +.-..+++..|..++.+.=...|.+.
T Consensus       109 i~Le~i~a~~pvg~~~~a~v~Ak~Gvyd~--~~ntL~l~~dv-~i~~~eG----i~a~~~sA~vDl~~G~~sg~~pv~i~  181 (216)
T COG5375         109 ITLEGILAILPVGEDNPAQVTAKSGVYDR--DTNTLDLTDDV-KITTDEG----IRADFQSAFVDLRTGNMSGDSPVDIS  181 (216)
T ss_pred             EEEEEEEEECCCCCCCCEEEEECCCEEEC--CCCEEECCCCE-EEECCHH----HHCCCCHHEEEECCCCCCCCCCEEEC
T ss_conf             89960015524799973468712342666--78713246876-8853543----31356012466025610267863330


Q ss_pred             ECCCCEEEEEEEEEEEEEEEEEECCCEEEEECC
Q ss_conf             515739998212799720389953858999077
Q gi|254780746|r  146 VKDNLRLDFETAVLDVKNITINSSDPVIITHSD  178 (215)
Q Consensus       146 ~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~  178 (215)
                      +.+| .+++++..+--+..+++..+.|...-..
T Consensus       182 ~~~g-sI~ads~~v~D~G~iivF~g~Vr~~id~  213 (216)
T COG5375         182 GKGG-SITADSYSVTDKGKIIVFEGNVRTRIDP  213 (216)
T ss_pred             CCCC-CEEEEEEEEECCCCEEEEECCEEEEECC
T ss_conf             7998-4876136752288489995656898447


No 23 
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=87.66  E-value=1.2  Score=22.40  Aligned_cols=64  Identities=11%  Similarity=0.060  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEE----------CCCCCEEEEEEEE
Q ss_conf             999999999999999876420034444454431345543058711089988----------4998889999601
Q gi|254780746|r   26 FLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDY----------SKDRVKYSLVAER   89 (215)
Q Consensus        26 ~lKi~Lpl~al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G~----------~~~g~~~~itA~~   89 (215)
                      ..-|+||++|+++.+|+++..+...-..-...+...++-.-.=+.-+|.|+          ++|-+..+++|+-
T Consensus        21 SpiWllPivAl~igawL~~~~~~~~G~~Itl~f~saeGIeaGKT~Iry~gvdVG~V~~v~LsdDl~~V~V~a~i   94 (553)
T COG3008          21 SPIWLLPIVALLIGAWLLFQHVQDRGPEITLTFESAEGIEAGKTPIRYQGVDVGVVTDIKLSDDLKGVEVTAQI   94 (553)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf             80689999999999999999997049759999547666214860588513136678898853676616999996


No 24 
>PRK10807 paraquat-inducible protein B; Provisional
Probab=87.16  E-value=1.3  Score=22.31  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999876420034
Q gi|254780746|r   27 LKFFFPFATVTIVGWFLLSSWIR   49 (215)
Q Consensus        27 lKi~Lpl~al~i~~~~~~~~~~~   49 (215)
                      .=|++|++|+++.+|+++..+..
T Consensus        18 ~iWlvPivA~~ig~wl~~~~~~~   40 (546)
T PRK10807         18 PVWIFPIVTALIGAWILFYHYSH   40 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58999999999999999999982


No 25 
>TIGR02099 TIGR02099 conserved hypothetical protein TIGR02099; InterPro: IPR011836    This entry describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane..
Probab=80.69  E-value=3.8  Score=19.62  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE--EEEE------ECCC--CEEEEE-CCEEEEEC
Q ss_conf             98889999601133588987449999568999816884567999934--5899------7356--469997-77799951
Q gi|254780746|r   79 DRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAH--SARF------NLAN--HTLYIS-QPFKMKVK  147 (215)
Q Consensus        79 ~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~--~G~y------~~~~--~~l~L~-g~V~i~~~  147 (215)
                      .+.+|.|.++...+..+...++-+|.+ ++++.+.+|.-  ..|...  -|..      |.--  =.++|+ |||-   +
T Consensus      1171 ~~a~f~~~~~~~W~G~P~~~~l~~L~G-~l~~~L~kG~f--~~V~~Ga~AaRlL~LlSl~sL~Rkl~LDF~PGD~F---~ 1244 (1362)
T TIGR02099      1171 RNASFELNADLSWRGSPWSFQLATLSG-KLKVDLGKGQF--LDVSGGAKAARLLGLLSLDSLLRKLRLDFSPGDVF---S 1244 (1362)
T ss_pred             CCCEEEEEEEEECCCCCCCCHHHHCCC-EEEEEECCCEE--EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C
T ss_conf             441059998863599861111233352-69999878089--97668435778888851888887985248888856---6


Q ss_pred             CCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEE
Q ss_conf             5739998212799720389953858999077189970
Q gi|254780746|r  148 DNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSAN  184 (215)
Q Consensus       148 ~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~  184 (215)
                      +|+-|.+=.-...+++|.++|++|+++.+|-+.|.=.
T Consensus      1245 ~G~aFD~i~G~~~~~~GV~~T~~P~~~~g~~a~i~~~ 1281 (1362)
T TIGR02099      1245 KGFAFDSIRGTASLSDGVLRTDDPIKMDGPAADIAIR 1281 (1362)
T ss_pred             CCCCCCEEEEEEEEECCEEEECCCEEEEEEEECEEEE
T ss_conf             7866521579899965689807867998776163873


No 26 
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=62.86  E-value=10  Score=17.15  Aligned_cols=74  Identities=11%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             EEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEE----ECCCEEEEEEEEEEECCCEEEEE
Q ss_conf             93458997356469997777999515739998212799720389953858999----07718997079999278689998
Q gi|254780746|r  123 FAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIIT----HSDFVLSANFARIENSSRSAVFA  198 (215)
Q Consensus       123 ~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~----~~~g~i~A~~m~i~~~~~~i~F~  198 (215)
                      ..+.++|+.....+.|..+..|.-+.. .+     .++- ...+..+-|+...    .|.+.+.+++-.--..+....|+
T Consensus        98 aGeT~iY~~eG~~i~Lteg~~Ie~~ck-~~-----~v~a-~~~v~v~Ap~v~~t~~~t~~~~i~GN~~~~v~g~S~aTft  170 (203)
T COG4384          98 AGETVIYNHEGAKIVLTEGGIIEADCK-TL-----TVNA-ATGVKVNAPLVEFTAVLTPQGQINGNGGMAVEGGSGATFT  170 (203)
T ss_pred             CCCEEEEECCCCEEEECCCCEEEEECC-EE-----EEEC-CCCEEECCCEEEEEEEECCCEEECCCCEEEECCCCCCCEE
T ss_conf             774688822574899725968998561-78-----9745-8852663641588777555438816511562257753064


Q ss_pred             CCEEE
Q ss_conf             89699
Q gi|254780746|r  199 GQVSV  203 (215)
Q Consensus       199 g~V~l  203 (215)
                      +.+-+
T Consensus       171 ~~~~~  175 (203)
T COG4384         171 GSVNQ  175 (203)
T ss_pred             CCHHH
T ss_conf             23232


No 27 
>KOG0860 consensus
Probab=52.81  E-value=15  Score=16.16  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=13.0

Q ss_pred             CCHH-HHCCCCHHHHHCCCHHHHHH
Q ss_conf             6314-54112023552010368899
Q gi|254780746|r    2 DHLD-RRNKILLQRSKYRQHVRFIQ   25 (215)
Q Consensus         2 ~~~~-rr~~~~~~~~~~~r~Sr~V~   25 (215)
                      ++|+ |...+-...+.+++.++.++
T Consensus        60 ~~L~drad~L~~~as~F~~~A~klk   84 (116)
T KOG0860          60 DELDDRADQLQAGASQFEKTAVKLK   84 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7899899999999999999999999


No 28 
>PRK01904 hypothetical protein; Provisional
Probab=45.51  E-value=20  Score=15.49  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCCCCEEEEECEEEEEEC----CCC--CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEE
Q ss_conf             444544313455430587110899884----998--88999960113358898744999956899981688456799993
Q gi|254780746|r   51 STFSKSSIDLLDFEPMIMKKFILSDYS----KDR--VKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFA  124 (215)
Q Consensus        51 ~~~~~~~~~~~~~~~~~m~~P~~~G~~----~~g--~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A  124 (215)
                      ..+..+.+-..+++++  ....|.+.+    .+|  +.+.++=..-+++. .+...+.=.-+-+++..   ....+.+..
T Consensus        25 ~lp~~ielL~vdG~k~--~~slf~~~~sl~L~~G~~HQIvfRy~~~v~~~-~~~~~~~S~p~IvtF~a---~~~~l~l~~   98 (217)
T PRK01904         25 TTSSNVEFLAIDGQKA--SKSLLGKAKSFNVDDTQVHQVVVRVSEIVRSG-SDRSLFESDPIIVTFQG---TTEDIVISA   98 (217)
T ss_pred             CCCCCCEEEEECCEEC--CCCCCCCCCCEECCCCCCEEEEEEEEEEECCC-CCEEEEECCCEEEEEEC---CCEEEEEEC
T ss_conf             0788713899768277--76545677615637997048999980267479-96448956889999955---881899967


Q ss_pred             EEEEEECCCCEEEEECCEEEEECCCCEE
Q ss_conf             4589973564699977779995157399
Q gi|254780746|r  125 HSARFNLANHTLYISQPFKMKVKDNLRL  152 (215)
Q Consensus       125 ~~G~y~~~~~~l~L~g~V~i~~~~G~~l  152 (215)
                      ....-..+.+...=+..+.+...+|-.+
T Consensus        99 P~~~~~~~ak~F~~~P~~~L~d~~g~~V  126 (217)
T PRK01904         99 PKLTNERDVDKFKKSPNITVKTASGKEI  126 (217)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECCCCEE
T ss_conf             9878889999875099289995899888


No 29 
>pfam05449 DUF754 Protein of unknown function (DUF754). This domain appears to be found in a group of prophage proteins.
Probab=42.53  E-value=22  Score=15.25  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0235520103688999999999999999998
Q gi|254780746|r   11 LLQRSKYRQHVRFIQFLKFFFPFATVTIVGW   41 (215)
Q Consensus        11 ~~~~~~~~r~Sr~V~~lKi~Lpl~al~i~~~   41 (215)
                      +.=|....||.+.++|+-++|.+.+...-.-
T Consensus        15 ~~yrR~garhr~~~swlAyll~~~~~~~pi~   45 (83)
T pfam05449        15 LTYRRNGARHRPGVSWLAYLLIVAAGSQPIR   45 (83)
T ss_pred             HEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             4045389654745789999999999888999


No 30 
>PRK04517 hypothetical protein; Provisional
Probab=39.28  E-value=26  Score=14.93  Aligned_cols=49  Identities=6%  Similarity=0.002  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEE
Q ss_conf             999999999999998-7642003444445443134554305871108998
Q gi|254780746|r   27 LKFFFPFATVTIVGW-FLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSD   75 (215)
Q Consensus        27 lKi~Lpl~al~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G   75 (215)
                      ||++.++.+++.+++ ...+.-.....+....+-.+++++..+.+-.|++
T Consensus         1 MK~~~~~~~ll~l~~s~sa~A~vtL~lp~~ielLaVnG~k~~~sg~l~~~   50 (216)
T PRK04517          1 MKLIKPLTCLLALAMSGSAFADVTVEVPDDVDLLVANGEKPKLSGGFFAS   50 (216)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEEECCEECCCCCCCCCC
T ss_conf             96027999999999713553320783699777999889733456653357


No 31 
>pfam05137 PilN Fimbrial assembly protein (PilN).
Probab=31.95  E-value=34  Score=14.24  Aligned_cols=20  Identities=5%  Similarity=0.041  Sum_probs=11.4

Q ss_pred             CEEEEEECCCCCEEEEEEEE
Q ss_conf             10899884998889999601
Q gi|254780746|r   70 KFILSDYSKDRVKYSLVAER   89 (215)
Q Consensus        70 ~P~~~G~~~~g~~~~itA~~   89 (215)
                      +-.++..+.+|..+.|++-.
T Consensus       109 gvwLt~l~~~~~~l~i~G~a  128 (162)
T pfam05137       109 GVYLTKIKMEGDQLTISGFS  128 (162)
T ss_pred             CEEEEEEEECCCEEEEEEEE
T ss_conf             75877888729889999888


No 32 
>pfam11696 DUF3292 Protein of unknown function (DUF3292). This eukaryotic family of proteins has no known function.
Probab=30.01  E-value=37  Score=14.05  Aligned_cols=20  Identities=10%  Similarity=-0.099  Sum_probs=10.6

Q ss_pred             CEEEEEEEEEE--ECCCEEEEE
Q ss_conf             18997079999--278689998
Q gi|254780746|r  179 FVLSANFARIE--NSSRSAVFA  198 (215)
Q Consensus       179 g~i~A~~m~i~--~~~~~i~F~  198 (215)
                      +.=.+||+.|.  +.++.+.++
T Consensus       597 ~kEv~DGL~I~g~~~~q~y~lT  618 (641)
T pfam11696       597 SKEVVDGLVISGDEPEQSYQLT  618 (641)
T ss_pred             CCCCCCCEEEEECCCCCEEEEE
T ss_conf             7410256599505788679998


No 33 
>pfam03961 DUF342 Protein of unknown function (DUF342). This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.01  E-value=41  Score=13.74  Aligned_cols=106  Identities=8%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEE--CCCCEEEEE-
Q ss_conf             98889999601133588987449999568999816884567999934589973564699977779995--157399982-
Q gi|254780746|r   79 DRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKV--KDNLRLDFE-  155 (215)
Q Consensus        79 ~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~--~~G~~l~t~-  155 (215)
                      .|+.+.+.+.+-+.-.+.++. ...-.+.+.....++...-.-+---.|..|.++..+.|.|+|.|.-  .+||...+. 
T Consensus       138 ~g~~~~~~~g~~~~~~~eDg~-~liA~~~G~~~~~~~~i~V~~vl~v~gdVd~~TGNI~F~G~V~I~G~V~~Gf~V~A~g  216 (450)
T pfam03961       138 PGKDLPLKAGKGTELSEEDGN-KLIATIDGQPVVVKGGISVDDVLEIKGDVDLSTGNIDFKGSVIIRGDVEDGMKVKATG  216 (450)
T ss_pred             CCCCCCCCCCCCEEEECCCCC-EEEEECCCEEEEECCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCEEEECC
T ss_conf             987664307998398269998-9999549779998998999998997687787734467777799974728997899486


Q ss_pred             EEEEE--EEEEEEEECCCEEEEEC-----CCEEEEEE
Q ss_conf             12799--72038995385899907-----71899707
Q gi|254780746|r  156 TAVLD--VKNITINSSDPVIITHS-----DFVLSANF  185 (215)
Q Consensus       156 ~~~~d--~~~~~i~s~~~V~~~~~-----~g~i~A~~  185 (215)
                      .+.+.  .....+.+.+.+.+.+.     .+.|.|++
T Consensus       217 dI~V~G~Ve~A~I~AgG~I~i~gGi~G~~~~~I~Agg  253 (450)
T pfam03961       217 DITVGGFVESATIEAGGDIIVKGGIIGRGKGKIKAGG  253 (450)
T ss_pred             CEEEEEEEEEEEEEECCCEEEECCEECCCEEEEEECC
T ss_conf             2899558978899979988995866618806999898


No 34 
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696    Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=26.47  E-value=42  Score=13.68  Aligned_cols=22  Identities=9%  Similarity=0.078  Sum_probs=9.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             103688999999999999999998
Q gi|254780746|r   18 RQHVRFIQFLKFFFPFATVTIVGW   41 (215)
Q Consensus        18 ~r~Sr~V~~lKi~Lpl~al~i~~~   41 (215)
                      +||..|=  .-+++|++-|+++++
T Consensus        15 ~Ry~NFs--~l~I~P~~lLLv~~~   36 (476)
T TIGR01000        15 KRYHNFS--TLVIVPIFLLLVFLV   36 (476)
T ss_pred             CHHHCCH--HHHHHHHHHHHHHHH
T ss_conf             0211012--689999999999999


No 35 
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=22.11  E-value=52  Score=13.20  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999999876420034
Q gi|254780746|r   25 QFLKFFFPFATVTIVGWFLLSSWIR   49 (215)
Q Consensus        25 ~~lKi~Lpl~al~i~~~~~~~~~~~   49 (215)
                      -++-+++|+..+++.+++++.....
T Consensus       105 T~lLW~~Pv~llllG~~~~~~~~rr  129 (153)
T COG3088         105 TLLLWGLPVVLLLLGGVLLVRRARR  129 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999995999999999999999765


No 36 
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333   Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=22.03  E-value=29  Score=14.57  Aligned_cols=51  Identities=14%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             0368899999999999999999876420--03444445443134554305871
Q gi|254780746|r   19 QHVRFIQFLKFFFPFATVTIVGWFLLSS--WIRISTFSKSSIDLLDFEPMIMK   69 (215)
Q Consensus        19 r~Sr~V~~lKi~Lpl~al~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~m~   69 (215)
                      .||.+|=..=+..|.+.+++++++.|.+  ..+...|......+++.|=+.|.
T Consensus        72 ~HS~kiE~VVW~iP~~Ii~fLg~ltW~~THkLDP~rPL~s~~kPI~iEVVAlD  124 (228)
T TIGR01433        72 HHSTKIEIVVWTIPILIIVFLGVLTWISTHKLDPYRPLASDVKPITIEVVALD  124 (228)
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEEEEC
T ss_conf             66777786021234888878778531000145888764245895279998706


No 37 
>pfam06890 Phage_Mu_Gp45 Bacteriophage Mu Gp45 protein. This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. The function of this family is unknown although it has been suggested that family members may be involved in baseplate assembly.
Probab=21.95  E-value=52  Score=13.18  Aligned_cols=18  Identities=11%  Similarity=0.255  Sum_probs=11.0

Q ss_pred             EEEEEEECCCCEEEEECC
Q ss_conf             345899735646999777
Q gi|254780746|r  124 AHSARFNLANHTLYISQP  141 (215)
Q Consensus       124 A~~G~y~~~~~~l~L~g~  141 (215)
                      .+-+.|+.+-+.+.|..+
T Consensus        78 GEvalY~~~G~~I~Lt~~   95 (162)
T pfam06890        78 GDVALYHDEGHRVRLTRD   95 (162)
T ss_pred             CCEEEEECCCCEEEEEEC
T ss_conf             858998068999999018


No 38 
>pfam05568 ASFV_J13L African swine fever virus J13L protein. This family consists of several African swine fever virus J13L proteins.
Probab=21.16  E-value=54  Score=13.08  Aligned_cols=14  Identities=7%  Similarity=-0.012  Sum_probs=7.6

Q ss_pred             CCCCCCEEEEECEE
Q ss_conf             34554305871108
Q gi|254780746|r   59 DLLDFEPMIMKKFI   72 (215)
Q Consensus        59 ~~~~~~~~~m~~P~   72 (215)
                      ..++++.+...||.
T Consensus        61 aaieeediqfinpy   74 (189)
T pfam05568        61 AAIEEEDIQFINPY   74 (189)
T ss_pred             HHHHHHCCEEECCC
T ss_conf             32004203020733


No 39 
>pfam12166 DUF3595 Protein of unknown function (DUF3595). This family of proteins is functionally uncharacterized.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=20.39  E-value=56  Score=12.99  Aligned_cols=16  Identities=0%  Similarity=-0.151  Sum_probs=8.8

Q ss_pred             CEEEEEECCCCCEEEE
Q ss_conf             1089988499888999
Q gi|254780746|r   70 KFILSDYSKDRVKYSL   85 (215)
Q Consensus        70 ~P~~~G~~~~g~~~~i   85 (215)
                      .|.|+....++.-..+
T Consensus       110 ~pif~~~a~~~~~~~~  125 (416)
T pfam12166       110 GPLYTMTAQSSEVTLI  125 (416)
T ss_pred             CCCEEEEECCCCEECC
T ss_conf             6521476036720126


Done!