RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) >gnl|CDD|34939 COG5375, COG5375, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 216 Score = 55.7 bits (134), Expect = 9e-09 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 18 RQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLDFE--PMIMKKFILSD 75 R+H R ++ LK P A + F+ S R + S++ + E +++KK + Sbjct: 26 RRHSRRVRRLKIGLPLAAGGLALAFIAQSVWR-TPALAVSLETAEIETGKIVLKKPRFNG 84 Query: 76 YSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHT 135 +KD YS+ AERA + II L+ +P + A S ++ +T Sbjct: 85 VNKDGRPYSITAERAIQDVKN-PNIITLEGILAILPVGEDNPAQVT--AKSGVYDRDTNT 141 Query: 136 LYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSA 195 L ++ K+ + +R DF++A +D++ ++ PV I+ ++A+ + + + Sbjct: 142 LDLTDDVKITTDEGIRADFQSAFVDLRTGNMSGDSPVDISGKGGSITADSYSVTDKGKII 201 Query: 196 VFAGQVSVVVNP 207 VF G V ++P Sbjct: 202 VFEGNVRTRIDP 213 >gnl|CDD|31876 COG1690, RtcB, Uncharacterized conserved protein [Function unknown]. Length = 432 Score = 28.4 bits (63), Expect = 1.7 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%) Query: 82 KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAH--SARFNLANHTLYIS 139 + +AE+A G+ I + D +L SE G YL A +A + AN L Sbjct: 227 DFVRLAEQAM-----GRYGIAVPDRQLACVPVDSEDGQAYLAAMAAAANYARANRQLITE 281 Query: 140 QPFKMKVKDNLRLDFE 155 +V+ L+ + Sbjct: 282 -----RVRRALQEVTD 292 >gnl|CDD|35675 KOG0454, KOG0454, KOG0454, 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]. Length = 502 Score = 28.1 bits (62), Expect = 1.8 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 139 SQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIEN-SSRSAVF 197 S P M V D + L + N++ ++T F+ S RIE+ +AV Sbjct: 62 SVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV 121 Query: 198 AGQVSVVVNP 207 G+ + VNP Sbjct: 122 DGE-KIAVNP 130 >gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]. Length = 1018 Score = 26.9 bits (59), Expect = 4.4 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 13/135 (9%) Query: 79 DRVKYSLVAERAKTS---------FNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARF 129 V L AE+A + GK F++ E + EY D+ A Sbjct: 28 TEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALD 87 Query: 130 NLANHTLYISQPFKMKVKDNLR--LDFETAVLDVKNITINSSDPVIITHSDFVLSANFAR 187 LA + Y K K KD D T + D+ + D ++ F+L Sbjct: 88 ILAAY--YSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKS 145 Query: 188 IENSSRSAVFAGQVS 202 ++++ F + S Sbjct: 146 MDDADAQFHFVLKQS 160 >gnl|CDD|37637 KOG2426, KOG2426, KOG2426, Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]. Length = 582 Score = 26.9 bits (59), Expect = 5.1 Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 72 ILSDYSKDRVKYSLVAERAKTS 93 I+ +Y+ DR+ + L AERA+ + Sbjct: 105 IVKNYTGDRLHFGLAAERARAA 126 >gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]. Length = 433 Score = 26.1 bits (57), Expect = 7.6 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Query: 140 QPFKMKVKDNLRLDFETAVLDVKNI--TINSSDPVI-----ITHSDFVLSANFARIENSS 192 +P +++ + DF TA ++ I I S D ++ +T + R ++S Sbjct: 83 RPDYVEIPTDDNSDFGTADS-LRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDAS 141 Query: 193 RSAVFAGQVSVVVNPGVLQKK 213 + + +S V PG KK Sbjct: 142 LAMLIGNALSEVPIPGQKGKK 162 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.137 0.392 Gapped Lambda K H 0.267 0.0717 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,531,109 Number of extensions: 129107 Number of successful extensions: 410 Number of sequences better than 10.0: 1 Number of HSP's gapped: 409 Number of HSP's successfully gapped: 17 Length of query: 215 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 125 Effective length of database: 4,318,927 Effective search space: 539865875 Effective search space used: 539865875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.0 bits)