RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780746|ref|YP_003065159.1| hypothetical protein
CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>gnl|CDD|34939 COG5375, COG5375, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 216

 Score = 55.7 bits (134), Expect = 9e-09
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 18  RQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLDFE--PMIMKKFILSD 75
           R+H R ++ LK   P A   +   F+  S  R +     S++  + E   +++KK   + 
Sbjct: 26  RRHSRRVRRLKIGLPLAAGGLALAFIAQSVWR-TPALAVSLETAEIETGKIVLKKPRFNG 84

Query: 76  YSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHT 135
            +KD   YS+ AERA     +   II L+     +P        +   A S  ++   +T
Sbjct: 85  VNKDGRPYSITAERAIQDVKN-PNIITLEGILAILPVGEDNPAQVT--AKSGVYDRDTNT 141

Query: 136 LYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSA 195
           L ++   K+   + +R DF++A +D++   ++   PV I+     ++A+   + +  +  
Sbjct: 142 LDLTDDVKITTDEGIRADFQSAFVDLRTGNMSGDSPVDISGKGGSITADSYSVTDKGKII 201

Query: 196 VFAGQVSVVVNP 207
           VF G V   ++P
Sbjct: 202 VFEGNVRTRIDP 213


>gnl|CDD|31876 COG1690, RtcB, Uncharacterized conserved protein [Function
           unknown].
          Length = 432

 Score = 28.4 bits (63), Expect = 1.7
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 82  KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAH--SARFNLANHTLYIS 139
            +  +AE+A      G+  I + D +L      SE G  YL A   +A +  AN  L   
Sbjct: 227 DFVRLAEQAM-----GRYGIAVPDRQLACVPVDSEDGQAYLAAMAAAANYARANRQLITE 281

Query: 140 QPFKMKVKDNLRLDFE 155
                +V+  L+   +
Sbjct: 282 -----RVRRALQEVTD 292


>gnl|CDD|35675 KOG0454, KOG0454, KOG0454, 3-isopropylmalate dehydratase (aconitase
           superfamily) [Amino acid transport and metabolism].
          Length = 502

 Score = 28.1 bits (62), Expect = 1.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 139 SQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIEN-SSRSAVF 197
           S P  M V D +        L    +  N++   ++T   F+ S    RIE+    +AV 
Sbjct: 62  SVPDPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV 121

Query: 198 AGQVSVVVNP 207
            G+  + VNP
Sbjct: 122 DGE-KIAVNP 130


>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
           that regulates K(+) uptake [Inorganic ion transport and
           metabolism].
          Length = 1018

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 13/135 (9%)

Query: 79  DRVKYSLVAERAKTS---------FNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARF 129
             V   L AE+A            +  GK   F++  E  +     EY D+      A  
Sbjct: 28  TEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALD 87

Query: 130 NLANHTLYISQPFKMKVKDNLR--LDFETAVLDVKNITINSSDPVIITHSDFVLSANFAR 187
            LA +  Y     K K KD      D  T + D+ +      D  ++    F+L      
Sbjct: 88  ILAAY--YSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKS 145

Query: 188 IENSSRSAVFAGQVS 202
           ++++     F  + S
Sbjct: 146 MDDADAQFHFVLKQS 160


>gnl|CDD|37637 KOG2426, KOG2426, KOG2426, Dihydroxyacetone kinase/glycerone kinase
           [Carbohydrate transport and metabolism].
          Length = 582

 Score = 26.9 bits (59), Expect = 5.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 72  ILSDYSKDRVKYSLVAERAKTS 93
           I+ +Y+ DR+ + L AERA+ +
Sbjct: 105 IVKNYTGDRLHFGLAAERARAA 126


>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
           subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
           structure and biogenesis].
          Length = 433

 Score = 26.1 bits (57), Expect = 7.6
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 140 QPFKMKVKDNLRLDFETAVLDVKNI--TINSSDPVI-----ITHSDFVLSANFARIENSS 192
           +P  +++  +   DF TA   ++ I   I S D ++     +T        +  R  ++S
Sbjct: 83  RPDYVEIPTDDNSDFGTADS-LRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDAS 141

Query: 193 RSAVFAGQVSVVVNPGVLQKK 213
            + +    +S V  PG   KK
Sbjct: 142 LAMLIGNALSEVPIPGQKGKK 162


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,531,109
Number of extensions: 129107
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 17
Length of query: 215
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,318,927
Effective search space: 539865875
Effective search space used: 539865875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)