RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780746|ref|YP_003065159.1| hypothetical protein
CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
(215 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 1e-04
Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 55/179 (30%)
Query: 42 FLL--SSWIRIS----TFSKS---SIDLL--DFEPM----IMKKFILSDYSKDRVKYSLV 86
L+ +S+ S F+K + D EP ++ KF+ Y V
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL--GYVSSLV----- 72
Query: 87 AERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFA---HSARFNLANHTLYISQPFK 143
F+ + L +FE YL H+ LA L +
Sbjct: 73 EPSKVGQFDQVLNLC-LTEFENC-----------YLEGNDIHA----LAAKLLQENDTTL 116
Query: 144 MKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANF--ARIENSSRSAVFAGQ 200
+K K+ ++ ++ + S+ SA F N+ A+F GQ
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSN------------SALFRAVGEGNAQLVAIFGGQ 163
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide
export pathway, structural genomics scottish structural
proteomics facility; 2.20A {Escherichia coli}
Length = 175
Score = 33.3 bits (75), Expect = 0.039
Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 9/140 (6%)
Query: 67 IMKKFILSDYSKD-RVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAH 125
+ Y+ + + Y L+A+ + + + + + A
Sbjct: 27 KSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTW---SVKAD 83
Query: 126 SARFNLANHTLYISQPFKMKVKDN----LRLDFETAVLDVKNITINSSDPVIITHSDFVL 181
A+ + LY+ ++ R+ + A +++ + S D V + + F
Sbjct: 84 KAKLT-NDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNS 142
Query: 182 SANFARIENSSRSAVFAGQV 201
S R S++A +V
Sbjct: 143 SGLKMRGNLRSKNAELIEKV 162
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; structural genomics, target 6426D,
PSI; 1.90A {Streptococcus mutans}
Length = 755
Score = 30.7 bits (69), Expect = 0.24
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 4 LDRRNKILLQRSKYRQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRIST--FSKSSIDLL 61
L+ +++ +R R IQ K P T +G F S IR + + + I
Sbjct: 387 LEDLSRVATKRPSDFAKRRDIQQEKLHLPLLPTTTIGSFPQSREIRRTRLAWKRGDISDA 446
Query: 62 DFEPMIMKKF 71
+++ I +
Sbjct: 447 EYKQFIQAEI 456
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.8 bits (61), Expect = 1.7
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 140 QPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARI------ENSSR 193
+P +K+ L V V P I F SAN RI +SS
Sbjct: 548 EPLTKALKEIL----GDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSM 603
Query: 194 SAVFAGQVSVVVNP 207
S+ + + + ++P
Sbjct: 604 SSYMSSKKTFEISP 617
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 27.8 bits (61), Expect = 2.1
Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 19/153 (12%)
Query: 67 IMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHS 126
K + ++ S K S E + G ++ L D D F
Sbjct: 427 QEKIYYITADSYAAAKSSPHLELLR---KKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSV 483
Query: 127 ARFNLANHTLYIS------------QPFKMKVKDNLRLDFETAVLDVKNITINSSDPVII 174
++ + + L PF +VK L V DV+ + P I+
Sbjct: 484 SKVDESLEKLADEVDESAKEAEKALTPFIDRVKALL----GERVKDVRLTHRLTDTPAIV 539
Query: 175 THSDFVLSANFARIENSSRSAVFAGQVSVVVNP 207
+ +S A++ ++ V + +NP
Sbjct: 540 STDADEMSTQMAKLFAAAGQKVPEVKYIFELNP 572
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 27.3 bits (60), Expect = 2.6
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 141 PFKMKVKDNLRLDFETAVLDVKNITINSSDPV 172
PF + L A + +I I+ V
Sbjct: 28 PFTATIVSVESLVGPKAPGETCHIVIDHGGNV 59
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 26.2 bits (57), Expect = 5.0
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 26/159 (16%)
Query: 69 KKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSAR 128
K + ++ S+ + S ER G +I+L + Q D F + A+
Sbjct: 449 KIYFMAGSSRKEAESSPFVERLL---KKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAK 505
Query: 129 FNLANHTLYISQPFKMKVK------DNLRLDFETAVLD--VKNITIN---SSDPVIITHS 177
+ S+ K + + L + L ++ ++ + P + S
Sbjct: 506 EGV---KFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVAS 562
Query: 178 DFVLSANFARI---------ENSSRSAVFAGQVSVVVNP 207
+ S N RI ++ S + + + + +NP
Sbjct: 563 QYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINP 601
>1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET:
FAD; 1.70A {Zea mays} SCOP: b.43.4.2 c.25.1.1
Length = 316
Score = 26.3 bits (57), Expect = 5.2
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 139 SQPFKMKVKDNLRLDFETAVLDVKNITINSSDP 171
+PF + L A + +I I+
Sbjct: 31 KEPFTATIVSVESLVGPKAPGETCHIVIDHGGN 63
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.137 0.392
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,750,345
Number of extensions: 75120
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 11
Length of query: 215
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 127
Effective length of database: 3,559,758
Effective search space: 452089266
Effective search space used: 452089266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.6 bits)