BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780746|ref|YP_003065159.1| hypothetical protein
CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
(215 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 438 bits (1126), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MDHLDRRNKILLQRSKYRQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDL 60
MDHLDRRNKILLQRSKYRQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDL
Sbjct: 1 MDHLDRRNKILLQRSKYRQHVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDL 60
Query: 61 LDFEPMIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDM 120
LDFEPMIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDM
Sbjct: 61 LDFEPMIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDM 120
Query: 121 YLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFV 180
YLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFV
Sbjct: 121 YLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDPVIITHSDFV 180
Query: 181 LSANFARIENSSRSAVFAGQVSVVVNPGVLQKKEN 215
LSANFARIENSSRSAVFAGQVSVVVNPGVLQKKEN
Sbjct: 181 LSANFARIENSSRSAVFAGQVSVVVNPGVLQKKEN 215
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 29.3 bits (64), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 20 HVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSID---LLDFEPMIMKKF----- 71
+ R + F+ +FF FAT +I+G L +S I I+ S++ D L + P + +
Sbjct: 2 YYRIVSFIGYFFGFATYSILGAILGAS-IYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
Query: 72 -ILSDYSKD 79
++++Y+++
Sbjct: 61 ALMAEYARE 69
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 24.3 bits (51), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 162 KNITINSSDPVIITHSDFVL 181
K I I S DP II+ SDF L
Sbjct: 517 KTIVIISHDPTIISMSDFSL 536
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 91 KTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLF 123
KT+ S KG + L+D +T P D+ LF
Sbjct: 2 KTAVASTKGGLELKDISVTYPNGYCALEDVNLF 34
>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 578
Score = 23.1 bits (48), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 68 MKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELT 109
+ +I++D D+V SL R+ F KG +++D +T
Sbjct: 225 IGAYIVAD---DKVYRSLTTGRSGDRFGYSKGATYVKDNNIT 263
>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
asiaticus str. psy62]
Length = 227
Score = 23.1 bits (48), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 57 SIDLLDFEPMIMKKFILSDY 76
+ID+LD EP++ KF D+
Sbjct: 100 AIDILDMEPILGVKFFKFDF 119
>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 23.1 bits (48), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 85 LVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDM 120
L+A + + NS I DFEL + T+R GD+
Sbjct: 471 LLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDI 506
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 23.1 bits (48), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 105 DFELTVPTQRSEYGDMYLF-AHSARFNLANHTL 136
DF L + TQ GD Y + AH R ++ L
Sbjct: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL 45
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 21.9 bits (45), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 116 EYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRL---------DFETAVLDVKNITI 166
EY +L A FN NH + S K+ D ++ DF + +KN+TI
Sbjct: 77 EYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFTNGI--IKNLTI 134
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,809
Number of Sequences: 1233
Number of extensions: 5230
Number of successful extensions: 21
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 11
length of query: 215
length of database: 328,796
effective HSP length: 70
effective length of query: 145
effective length of database: 242,486
effective search space: 35160470
effective search space used: 35160470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)