HHsearch alignment for GI: 254780747 and conserved domain: CHL00028
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit.
Probab=99.59 E-value=6.9e-14 Score=107.35 Aligned_cols=160 Identities=24% Similarity=0.264 Sum_probs=118.1
Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
T Consensus 32 iifl~~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~AaS~aslilaa 109 (201)
T CHL00028 32 LLFLGQELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGIAIYDTMQFVK--PDVHTICLGLAASMGSFILAG 109 (201)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEHHCCHHHHHHHC
T ss_conf 899898017899999999999972649799989999899854868999999998559--995899760010536788614
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
T Consensus 110 G~kgkR~~~pns~iMIH-----qp----------------~~g~-------~-~G~a~di~~~a~el~~~~~~i~~iya~ 160 (201)
T CHL00028 110 GEITKRLAFPHARVMIH-----QP----------------ASSF-------Y-EGQASEFVLEAEELLKLRETLTRVYVQ 160 (201)
T ss_pred CCCCCEEECCCHHHHEE-----CC----------------CCCC-------C-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88763562658556124-----45----------------4676-------7-897899999999999999999999998
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH
Q ss_conf 1499988998873498-2378899877980623898
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~ 230 (293)
T Consensus 161 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~ 196 (201)
T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVE 196 (201)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCC
T ss_conf 879599999987157842679999981998888257