HHsearch alignment for GI: 254780747 and conserved domain: COG0447
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism].
Probab=97.46 E-value=0.0025 Score=40.86 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=101.9
Q ss_pred CCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------------------------H
Q ss_conf 87289999766623-------8699999999986189987999975888888899------------------------9
Q gi|254780747|r 35 SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYA------------------------G 83 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~------------------------~ 83 (293)
T Consensus 26 ~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~iGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnv 105 (282)
T COG0447 26 VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNV 105 (282)
T ss_pred CCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 68557998468666236787329999999986301788328998547888843505887121167777457666763000
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCC-
Q ss_conf 9999999984147867996033233223210001110001301353455565302102456777420422553155211-
Q gi|254780747|r 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA- 162 (293)
Q Consensus 84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~- 162 (293)
T Consensus 106 LdlQrlIR~--~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~---------------------VGSFD~G 162 (282)
T COG0447 106 LDLQRLIRT--MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPK---------------------VGSFDGG 162 (282)
T ss_pred HHHHHHHHH--CCCCEEEEECCEEECCCCEEEEEEEEEEECCCCHHCCCCCC---------------------CCCCCCC
T ss_conf 238889874--89655999703750586279998542550001311378998---------------------3420586
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH----HHHHHH
Q ss_conf 2346667899998877777666667789999851499988998873498237889987798062389899----999999
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE----VWQSLY 238 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~----a~~~l~ 238 (293)
T Consensus 163 ~Gs----------~yla-----------r~VGq----K-kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~ 216 (282)
T COG0447 163 YGS----------SYLA-----------RIVGQ----K-KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAR 216 (282)
T ss_pred CCH----------HHHH-----------HHHHH----H-HHHHHHHHHHCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH
T ss_conf 447----------8999-----------98642----5-65654123310569999856871231338888899999999
Q ss_pred HHC
Q ss_conf 741
Q gi|254780747|r 239 ALG 241 (293)
Q Consensus 239 ~~~ 241 (293)
T Consensus 217 E~l 219 (282)
T COG0447 217 EML 219 (282)
T ss_pred HHH
T ss_conf 998