HHsearch alignment for GI: 254780747 and conserved domain: COG1030

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=99.74  E-value=8e-16  Score=119.54  Aligned_cols=173  Identities=25%  Similarity=0.294  Sum_probs=132.4

Q ss_pred             CCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC---
Q ss_conf             56778728999976662386--9999999998618998799997588888889999999999984147867996033---
Q gi|254780747|r   31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE---  105 (293)
Q Consensus        31 ~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~---  105 (293)
T Consensus        21 ~~~~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~--~s~vPV~~yv~p~ga   97 (436)
T COG1030          21 VATAEKKVYVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL--NSPVPVIGYVVPDGA   97 (436)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCC
T ss_conf             1256771899992574277799999999999985-7984799996089726799999999987--599977999948985


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
T Consensus        98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~------------------------------g~~~~~~~-----~~n~  142 (436)
T COG1030          98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGG------------------------------GTSAKEAN-----TTNA  142 (436)
T ss_pred             CHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCC------------------------------CCCCCCHH-----HHHH
T ss_conf             110403279885676551798743546502479------------------------------98855014-----3789


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf             67789999851499988998873-498237889987798062389-899999999741
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG  241 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l~~~~  241 (293)
T Consensus       143 ~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~  200 (436)
T COG1030         143 AVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS  200 (436)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             9999999999839986999998642157786679855940035587899998704775