HHsearch alignment for GI: 254780747 and conserved domain: COG1030
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=99.74 E-value=8e-16 Score=119.54 Aligned_cols=173 Identities=25% Similarity=0.294 Sum_probs=132.4
Q ss_pred CCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC---
Q ss_conf 56778728999976662386--9999999998618998799997588888889999999999984147867996033---
Q gi|254780747|r 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE--- 105 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~--- 105 (293)
T Consensus 21 ~~~~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~--~s~vPV~~yv~p~ga 97 (436)
T COG1030 21 VATAEKKVYVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL--NSPVPVIGYVVPDGA 97 (436)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCC
T ss_conf 1256771899992574277799999999999985-7984799996089726799999999987--599977999948985
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
T Consensus 98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~------------------------------g~~~~~~~-----~~n~ 142 (436)
T COG1030 98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGG------------------------------GTSAKEAN-----TTNA 142 (436)
T ss_pred CHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCC------------------------------CCCCCCHH-----HHHH
T ss_conf 110403279885676551798743546502479------------------------------98855014-----3789
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf 67789999851499988998873-498237889987798062389-899999999741
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG 241 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l~~~~ 241 (293)
T Consensus 143 ~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~ 200 (436)
T COG1030 143 AVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS 200 (436)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 9999999999839986999998642157786679855940035587899998704775