HHsearch alignment for GI: 254780747 and conserved domain: COG3904
>COG3904 Predicted periplasmic protein [Function unknown].
Probab=93.80 E-value=0.55 Score=26.13 Aligned_cols=89 Identities=20% Similarity=0.158 Sum_probs=55.2
Q ss_pred EEEEEEEEEEECCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 2899997666238699---9999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r 37 HVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 (293)
Q Consensus 37 ~i~~i~i~G~I~~~~~---l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~ 113 (293)
T Consensus 75 r~l~VvVse~~a~~da~sal~~lir~~G~y-~--~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v~s~A~CasaCpl 149 (245)
T COG3904 75 RQLPVVVSEPGANVDAASALGRLIRKAGLY-I--ATGVTLNSPGGSVAKACSMGKLIRED--GFDTAVDSGAMCASACPL 149 (245)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCCE-E--EEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHCCCHH
T ss_conf 535699737977834899999998556761-6--77778507998578887640144340--567224535555234526
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 00011100013013534
Q gi|254780747|r 114 ISCASNIIVAAETSLVG 130 (293)
Q Consensus 114 iAs~ad~I~a~p~s~vG 130 (293)
T Consensus 150 ~fagGvrRvve~~ayiG 166 (245)
T COG3904 150 MFAGGVRRVVEDFAYIG 166 (245)
T ss_pred HHHCCEEEEECCCCEEE
T ss_conf 63125146612562355