HHsearch alignment for GI: 254780747 and conserved domain: COG3904

>COG3904 Predicted periplasmic protein [Function unknown].
Probab=93.80  E-value=0.55  Score=26.13  Aligned_cols=89  Identities=20%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             EEEEEEEEEEECCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             2899997666238699---9999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r   37 HVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL  113 (293)
Q Consensus        37 ~i~~i~i~G~I~~~~~---l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~  113 (293)
T Consensus        75 r~l~VvVse~~a~~da~sal~~lir~~G~y-~--~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v~s~A~CasaCpl  149 (245)
T COG3904          75 RQLPVVVSEPGANVDAASALGRLIRKAGLY-I--ATGVTLNSPGGSVAKACSMGKLIRED--GFDTAVDSGAMCASACPL  149 (245)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHCCCCE-E--EEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHCCCHH
T ss_conf             535699737977834899999998556761-6--77778507998578887640144340--567224535555234526


Q ss_pred             CCCCCCCCCCCHHHHHH
Q ss_conf             00011100013013534
Q gi|254780747|r  114 ISCASNIIVAAETSLVG  130 (293)
Q Consensus       114 iAs~ad~I~a~p~s~vG  130 (293)
T Consensus       150 ~fagGvrRvve~~ayiG  166 (245)
T COG3904         150 MFAGGVRRVVEDFAYIG  166 (245)
T ss_pred             HHHCCEEEEECCCCEEE
T ss_conf             63125146612562355