HHsearch alignment for GI: 254780747 and conserved domain: PRK11423
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional.
Probab=98.99 E-value=1e-08 Score=74.74 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=104.7
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC------CCCCCHHH-----------HHHHHHHH
Q ss_conf 87289999766623-8------6999999999861899879999758------88888899-----------99999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS------SPGGSAYA-----------GEAIFRAI 90 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~------SpGG~~~~-----------~~~i~~ai 90 (293)
T Consensus 11 ~d~Va~itlnrP~~~Nal~~~m~~~l~~al~~~~~-~~~r~vvl~~~~g~~~F~AG~Dl~e~~~~~~~~~~~~~~~~~~~ 89 (261)
T PRK11423 11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNR-PEIRVVILRAPSGSKVWSAGHDIHELPAGGRDPLSYDDPLRQIL 89 (261)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999748687799899999999999999857-99879999658887542378665453225766677877999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
T Consensus 90 ~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~~~---------------- 141 (261)
T PRK11423 90 RMIQKFPKPVIAMVEGSVWGGAFDLVMSCDLIIAASTSTFAMTP------------ANLGVPYN---------------- 141 (261)
T ss_pred HHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEECCC------------HHCCCCCC----------------
T ss_conf 99994899899996773321408999987542101162695762------------00277768----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 89999887777766666778999985149998899-8873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
T Consensus 142 ~~~-------------~~~l~~~------iG~~~A~ellltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 195 (261)
T PRK11423 142 LSG-------------ILNFTND------AGIHIVKEMFFTASPITAERALAVGILNHLVEVEELEDFTLQMA 195 (261)
T ss_pred CCH-------------HHHHHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 538-------------9999999------76999999886289673999998798407548579999999999