HHsearch alignment for GI: 254780747 and conserved domain: TIGR00513
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.51 E-value=0.0066 Score=38.22 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=80.5
Q ss_pred HHHHHHHHHHCCCC-CCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999861899-879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r 52 ELIERIERISRDDS-ATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 52 ~l~~~l~~a~~d~~-ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
T Consensus 144 GYRKALrLm~~AerF~~PIi~fiDT~GAYPGigAEerGQsEAIA~NL~Ema~L~VPvic~vIGEGGSGGALaiGVGDkv~ 223 (329)
T TIGR00513 144 GYRKALRLMKMAERFNLPIITFIDTPGAYPGIGAEERGQSEAIAKNLREMARLKVPVICTVIGEGGSGGALAIGVGDKVN 223 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 04799999987776179858865388887562044505278999998997109988799985268614789998988998
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293)
Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293)
T Consensus 224 MLeyS~--------------------------------------YSViSPEGCAai------LWk------------da~ 247 (329)
T TIGR00513 224 MLEYST--------------------------------------YSVISPEGCAAI------LWK------------DAS 247 (329)
T ss_pred HHHHHH--------------------------------------HCCCCHHHHHHH------CCC------------CHH
T ss_conf 876202--------------------------------------200087889986------067------------962
Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf 99887349823788998779806238
Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVG 228 (293)
Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig 228 (293)
T Consensus 248 ka~~Aa~amkItA~dLkel~lID~iI 273 (329)
T TIGR00513 248 KAEKAAEAMKITAPDLKELGLIDSII 273 (329)
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 67999998378921566401343101