HHsearch alignment for GI: 254780747 and conserved domain: TIGR02441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=98.31 E-value=2.1e-06 Score=60.31 Aligned_cols=96 Identities=16% Similarity=0.326 Sum_probs=76.6
Q ss_pred CCEEEEEEEEEEECCH--------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH------------------HHHH
Q ss_conf 8728999976662386--------9999999998618998799997588888889999------------------9999
Q gi|254780747|r 35 SPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGE------------------AIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~--------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~------------------~i~~ 88 (293)
T Consensus 20 ~gdVaVvkid~PN~KvN~L~k~l~~Ef~~v~~~l~~~~~v~SaVliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~ 99 (740)
T TIGR02441 20 KGDVAVVKIDSPNSKVNTLSKELSAEFKEVLNELWTNEAVKSAVLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQE 99 (740)
T ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06779998778997301113789999999998730682524688974699870325626789872268999998677899
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHH
Q ss_conf 99984-147867996033233223210001110001301--3534
Q gi|254780747|r 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVG 130 (293)
Q Consensus 89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vG 130 (293)
T Consensus 100 ~~~r~E~S~KPiVAAI~GsClGGGLElAlaChYRIAtkD~KT~Lg 144 (740)
T TIGR02441 100 MFERIEKSKKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG 144 (740)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 999974289875875226310416899875044112236545346