>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

Probab=99.68 E-value=1.7e-15 Score=117.54 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=117.2 Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 2 ii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~--~~v~tv~~G~aaS~as~i~~a 79 (162) T cd07013 2 EIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIK--ADVVTIIDGLAASMGSVIAMA 79 (162) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHC T ss_conf 899888017899999999999972629799989999799857999999999998479--998999630465165899973 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 80 G~~g~R~~~~~s~~Mi------Hq~~~---------------g--------~~-G~~~di~~~~~~l~~~~~~i~~i~a~ 129 (162) T cd07013 80 GAKGKRFILPNAMMMI------HQPWG---------------G--------TL-GDATDMRIYADLLLKVEGNLVSAYAH 129 (162) T ss_pred CCCCCCEECCCHHHHH------HCCCC---------------C--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7888817676689988------06345---------------6--------57-79999999999999999999999999 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCC Q ss_conf 1499988998873498-2378899877980623 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV 227 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~i 227 (293) T Consensus 130 ~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD~I 162 (162) T cd07013 130 KTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162) T ss_pred HHCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCC T ss_conf 889099999986148823669999985998809

HHsearch alignment for GI: 254780747 and conserved domain: cd07013