>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

Probab=99.87 E-value=2.3e-21 Score=154.39 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=120.3 Q ss_pred EEEEEEEECCH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC Q ss_conf 99976662386-----9999999998618998799997588888889999999999984147867996033233223210 Q gi|254780747|r 40 RIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 (293) Q Consensus 40 ~i~i~G~I~~~-----~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i 114 (293) T Consensus 2 ~i~~~g~i~~~~~~~~~~~~~~L~~---~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~--~~~V~t~~~G~aaS~g~~I 76 (160) T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDA---LGDDSDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGLAASAASVI 76 (160) T ss_pred EEEEEEEECCCCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHH T ss_conf 6999955637768399999999982---7999997999989985899999999999867--9598999927077889999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00111000130135345556530210245677742042255315521123466678999988777776666677899998 Q gi|254780747|r 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 (293) Q Consensus 115 As~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va 194 (293) T Consensus 77 ~~ag~kr~~~~~s~im------iH~------------~s~~~~G~------------~~d~~~~~~~~~~~~~~~~~~~~ 126 (160) T cd07016 77 AMAGDEVEMPPNAMLM------IHN------------PSTGAAGN------------ADDLRKAADLLDKIDESIANAYA 126 (160) T ss_pred HHCCCEEEECHHHHHH------HCC------------CCCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8549859984578754------168------------66567878------------89999999999999999999999 Q ss_pred HCCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCC Q ss_conf 5149998899887349823-78899877980623 Q gi|254780747|r 195 ESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 (293) Q Consensus 195 ~~R~~~~~~~~~~~~g~~~-~~~~A~~~GLvD~i 227 (293) T Consensus 127 ~~tg~~~~~i~~~~~~d~w~sa~EA~e~GliD~I 160 (160) T cd07016 127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160) T ss_pred HHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCCC T ss_conf 8819999999998659908439999984898729

HHsearch alignment for GI: 254780747 and conserved domain: cd07016