Query         gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 293
No_of_seqs    176 out of 2224
Neff          7.5 
Searched_HMMs 39220
Date          Sun May 29 19:11:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780747.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00706 SppA_dom signal pept 100.0       0       0  420.8  16.8  206   37-242     1-224 (224)
  2 PRK10949 protease 4; Provision 100.0       0       0  397.2  22.9  231   31-263   321-561 (618)
  3 cd07022 S49_Sppa_36K_type Sign 100.0       0       0  381.1  17.8  201   37-238     1-214 (214)
  4 TIGR00705 SppA_67K signal pept 100.0       0       0  378.7  19.5  235   32-266   316-568 (614)
  5 cd07023 S49_Sppa_N_C Signal pe 100.0       0       0  376.8  19.5  201   37-237     1-207 (208)
  6 cd07019 S49_SppA_1 Signal pept 100.0       0       0  369.8  17.0  201   37-238     1-211 (211)
  7 COG0616 SppA Periplasmic serin 100.0       0       0  359.5  22.7  212   35-246    58-278 (317)
  8 cd07018 S49_SppA_67K_type Sign 100.0       0       0  352.1  15.9  190   49-239    30-222 (222)
  9 PRK10949 protease 4; Provision 100.0       0       0  318.5  22.4  240    3-243    21-301 (618)
 10 PRK11778 putative periplasmic  100.0       0       0  313.0  18.0  236   33-279    66-308 (317)
 11 cd07014 S49_SppA Signal peptid 100.0 1.7E-43       0  293.8  14.2  162   40-238     1-177 (177)
 12 pfam01343 Peptidase_S49 Peptid 100.0 1.2E-43       0  294.7  10.7  152   92-243     2-153 (154)
 13 TIGR00705 SppA_67K signal pept 100.0 4.9E-39 1.3E-43  265.6  13.1  238    6-244     8-291 (614)
 14 cd00394 Clp_protease_like Case 100.0   1E-29 2.5E-34  207.1  13.8  158   40-227     1-161 (161)
 15 cd07016 S14_ClpP_1 Caseinolyti  99.9 2.3E-21 5.9E-26  154.4  13.3  153   40-227     2-160 (160)
 16 cd07021 Clp_protease_NfeD_like  99.9 1.9E-21 4.8E-26  155.0  12.2  160   38-235     1-177 (178)
 17 cd07020 Clp_protease_NfeD_1 No  99.9 1.9E-20 4.8E-25  148.7  12.8  169   38-240     1-176 (187)
 18 cd07015 Clp_protease_NfeD Nodu  99.8 2.3E-18   6E-23  135.5  11.1  164   38-235     1-171 (172)
 19 COG1030 NfeD Membrane-bound se  99.7   8E-16   2E-20  119.5  18.7  173   31-241    21-200 (436)
 20 pfam00574 CLP_protease Clp pro  99.7 1.5E-15 3.8E-20  117.9  13.7  158   40-229    18-180 (182)
 21 cd07013 S14_ClpP Caseinolytic   99.7 1.7E-15 4.2E-20  117.5  13.8  156   40-227     2-162 (162)
 22 COG0740 ClpP Protease subunit   99.7 9.5E-16 2.4E-20  119.1  11.7  162   41-234    30-196 (200)
 23 PRK12553 ATP-dependent Clp pro  99.6 3.5E-14   9E-19  109.2  13.1  162   40-231    34-200 (204)
 24 PRK00277 clpP ATP-dependent Cl  99.6   5E-14 1.3E-18  108.2  13.8  159   40-230    29-192 (197)
 25 CHL00028 clpP ATP-dependent Cl  99.6 6.9E-14 1.8E-18  107.3  13.7  160   40-230    32-196 (201)
 26 PRK12551 ATP-dependent Clp pro  99.6 9.4E-14 2.4E-18  106.5  12.5  160   40-231    27-191 (196)
 27 pfam01972 SDH_sah Serine dehyd  99.4 1.4E-11 3.5E-16   92.9  14.2  188   33-241    48-262 (286)
 28 PRK12552 ATP-dependent Clp pro  99.4 7.2E-12 1.8E-16   94.6  11.2  158   40-229    32-213 (222)
 29 KOG0840 consensus               99.3 5.8E-11 1.5E-15   88.9  10.2  158   41-230    95-257 (275)
 30 PRK05869 enoyl-CoA hydratase;   99.2 4.5E-10 1.1E-14   83.4  11.8  163   33-241    13-198 (225)
 31 PRK06495 enoyl-CoA hydratase;   99.2 3.3E-10 8.4E-15   84.2  11.1  158   34-241    10-193 (257)
 32 PRK08138 enoyl-CoA hydratase;   99.2 7.1E-10 1.8E-14   82.1  12.5  163   33-241    12-196 (260)
 33 PRK06688 enoyl-CoA hydratase;   99.2   9E-10 2.3E-14   81.5  12.4  161   34-241    11-199 (263)
 34 PRK09674 enoyl-CoA hydratase-i  99.1 1.4E-09 3.5E-14   80.3  12.4  162   34-241    10-193 (257)
 35 PRK07657 enoyl-CoA hydratase;   99.1 1.3E-09 3.2E-14   80.5  11.7  164   31-241     8-197 (261)
 36 PRK07511 enoyl-CoA hydratase;   99.1 1.5E-09 3.9E-14   80.0  12.0  160   34-240     9-196 (259)
 37 PRK07854 enoyl-CoA hydratase;   99.1 1.6E-09   4E-14   79.9  12.1  163   35-244     7-188 (243)
 38 PRK07830 consensus              99.1 1.7E-09 4.2E-14   79.8  11.9  161   35-241    18-203 (267)
 39 PRK06951 consensus              99.1 1.6E-09 4.2E-14   79.8  11.5  160   35-241     8-189 (254)
 40 PRK09076 enoyl-CoA hydratase;   99.1 2.5E-09 6.5E-14   78.6  12.3  161   34-241     9-194 (258)
 41 PRK07658 enoyl-CoA hydratase;   99.1 3.3E-09 8.3E-14   77.9  12.8  161   35-241     9-193 (257)
 42 PRK06494 enoyl-CoA hydratase;   99.1 2.6E-09 6.6E-14   78.6  12.2  160   35-241    11-193 (259)
 43 PRK05864 enoyl-CoA hydratase;   99.1 2.9E-09 7.3E-14   78.3  12.1  164   32-241     7-202 (269)
 44 PRK06144 enoyl-CoA hydratase;   99.1 2.2E-09 5.7E-14   79.0  11.5  163   35-242    15-203 (262)
 45 PRK06142 enoyl-CoA hydratase;   99.1 2.4E-09 6.2E-14   78.7  11.7  159   35-240    12-207 (271)
 46 PRK05995 enoyl-CoA hydratase;   99.1 2.2E-09 5.7E-14   79.0  11.3  159   35-241    11-197 (261)
 47 TIGR03210 badI 2-ketocyclohexa  99.1 2.4E-09 6.1E-14   78.8  11.5  157   35-240     9-192 (256)
 48 PRK07938 enoyl-CoA hydratase;   99.1 3.3E-09 8.5E-14   77.9  11.7  160   32-241     6-190 (249)
 49 PRK07510 consensus              99.1 4.9E-09 1.2E-13   76.8  12.4  162   34-241    11-202 (266)
 50 PRK08139 enoyl-CoA hydratase;   99.1 4.6E-09 1.2E-13   77.0  12.2  160   34-241    16-201 (265)
 51 PRK06210 enoyl-CoA hydratase;   99.1 5.9E-09 1.5E-13   76.3  12.7  161   34-241    12-207 (272)
 52 PRK07110 polyketide biosynthes  99.1 3.9E-09   1E-13   77.4  11.7  162   35-242    11-202 (257)
 53 PRK09245 enoyl-CoA hydratase;   99.1 5.4E-09 1.4E-13   76.6  12.4  162   34-241     9-202 (266)
 54 PRK11730 fadB multifunctional   99.1 9.1E-10 2.3E-14   81.4   8.4  160   32-238    11-198 (715)
 55 PRK05674 gamma-carboxygeranoyl  99.1 4.7E-09 1.2E-13   76.9  12.0  160   34-241    12-199 (271)
 56 PRK06023 enoyl-CoA hydratase;   99.1 4.9E-09 1.3E-13   76.8  12.0  160   35-241    10-193 (248)
 57 PRK05862 enoyl-CoA hydratase;   99.1 6.2E-09 1.6E-13   76.2  12.4  161   35-241    11-193 (257)
 58 PRK06190 enoyl-CoA hydratase;   99.0   3E-09 7.7E-14   78.2  10.7  160   35-241    11-193 (258)
 59 PRK05980 enoyl-CoA hydratase;   99.0 7.1E-09 1.8E-13   75.8  12.6  160   35-241    10-199 (260)
 60 PRK03580 carnitinyl-CoA dehydr  99.0 5.5E-09 1.4E-13   76.5  11.8  161   35-241    11-194 (262)
 61 PRK06143 enoyl-CoA hydratase;   99.0   1E-08 2.6E-13   74.9  13.2  165   30-241    11-200 (260)
 62 PRK09120 p-hydroxycinnamoyl Co  99.0 5.8E-09 1.5E-13   76.4  11.9  161   35-241    16-205 (277)
 63 PRK11154 fadJ multifunctional   99.0 2.6E-09 6.6E-14   78.6  10.1  164   31-241     9-202 (706)
 64 PRK07629 consensus              99.0 7.3E-09 1.9E-13   75.7  12.3  160   34-241    10-197 (261)
 65 PRK05809 3-hydroxybutyryl-CoA   99.0 8.4E-09 2.2E-13   75.3  12.6  161   35-242    11-197 (260)
 66 cd06558 crotonase-like Crotona  99.0 9.1E-09 2.3E-13   75.1  12.6  160   35-241     6-192 (195)
 67 PRK05870 enoyl-CoA hydratase;   99.0 1.2E-08 3.1E-13   74.3  13.1  165   34-244     9-199 (254)
 68 PRK07396 naphthoate synthase;   99.0 2.8E-09 7.1E-14   78.4   9.6  161   35-241    20-206 (273)
 69 PRK05981 enoyl-CoA hydratase;   99.0 1.1E-08 2.8E-13   74.6  12.6  160   35-241    11-202 (266)
 70 PRK07260 enoyl-CoA hydratase;   99.0 1.1E-08 2.8E-13   74.6  12.5  161   35-241    11-199 (260)
 71 PRK06563 enoyl-CoA hydratase;   99.0 5.6E-09 1.4E-13   76.5  10.9  161   34-241     5-191 (255)
 72 PRK07509 enoyl-CoA hydratase;   99.0 1.5E-08 3.7E-13   73.8  12.9  161   35-241    10-203 (262)
 73 PRK08260 enoyl-CoA hydratase;   99.0 5.7E-09 1.5E-13   76.4  10.7  160   35-241    11-209 (293)
 74 PRK07799 enoyl-CoA hydratase;   99.0 7.9E-09   2E-13   75.5  11.4  161   35-241    12-199 (263)
 75 PRK08272 enoyl-CoA hydratase;   99.0 1.3E-08 3.2E-13   74.2  12.4  159   35-242    17-229 (308)
 76 PRK07327 enoyl-CoA hydratase;   99.0 6.3E-09 1.6E-13   76.1  10.7  164   33-242    17-206 (271)
 77 PRK08290 enoyl-CoA hydratase;   99.0 1.1E-08 2.9E-13   74.5  11.9  159   35-242    11-213 (284)
 78 PRK11423 methylmalonyl-CoA dec  99.0   1E-08 2.7E-13   74.7  11.7  159   35-241    11-195 (261)
 79 PRK07468 enoyl-CoA hydratase;   99.0 2.8E-08   7E-13   72.1  13.8  156   34-237    11-194 (262)
 80 PRK06127 enoyl-CoA hydratase;   99.0 1.6E-08 4.1E-13   73.6  12.4  160   35-241    18-205 (269)
 81 PRK12478 enoyl-CoA hydratase;   99.0   1E-08 2.6E-13   74.8  11.3  157   35-241    12-208 (298)
 82 PRK08140 enoyl-CoA hydratase;   99.0 1.6E-08 4.1E-13   73.6  11.6  160   35-241    11-198 (262)
 83 PRK07659 enoyl-CoA hydratase;   98.9 2.4E-08 6.1E-13   72.5  12.1  149   34-229    12-185 (260)
 84 PRK08252 enoyl-CoA hydratase;   98.9 1.9E-08 4.9E-13   73.1  11.6  161   35-242    10-191 (254)
 85 PRK08259 enoyl-CoA hydratase;   98.9 1.6E-08 4.1E-13   73.6  10.9  161   35-242    10-193 (254)
 86 PRK08258 enoyl-CoA hydratase;   98.9 2.9E-08 7.3E-13   72.0  12.0  162   35-241    17-206 (270)
 87 PRK08321 naphthoate synthase;   98.9 2.3E-08 5.9E-13   72.6  11.3  160   35-241    32-235 (302)
 88 PRK08150 enoyl-CoA hydratase;   98.9 4.8E-08 1.2E-12   70.6  11.2  159   35-241    18-200 (264)
 89 TIGR03189 dienoyl_CoA_hyt cycl  98.9 6.5E-08 1.7E-12   69.7  11.9  149   35-231     8-177 (251)
 90 PRK07827 enoyl-CoA hydratase;   98.9 1.4E-07 3.6E-12   67.6  13.3  156   35-237    10-191 (255)
 91 COG1024 CaiD Enoyl-CoA hydrata  98.8 1.1E-07 2.8E-12   68.3  12.5  159   36-241    13-198 (257)
 92 KOG1680 consensus               98.8 3.1E-08 7.9E-13   71.8   9.6  160   34-241    43-226 (290)
 93 pfam00378 ECH Enoyl-CoA hydrat  98.7 1.1E-07 2.9E-12   68.2   9.8  131   51-228    20-168 (169)
 94 PRK06213 enoyl-CoA hydratase;   98.7 4.5E-07 1.1E-11   64.5  11.0  160   35-242    10-192 (229)
 95 PRK06072 enoyl-CoA hydratase;   98.7 1.1E-06 2.7E-11   62.1  12.7  158   38-242     2-181 (240)
 96 PRK07112 polyketide biosynthes  98.6 5.2E-07 1.3E-11   64.1  10.8  152   35-235    11-184 (251)
 97 TIGR00493 clpP ATP-dependent C  98.4 1.6E-06   4E-11   61.1   7.1  154   41-228    30-190 (192)
 98 TIGR02441 fa_ox_alpha_mit fatt  98.3 2.1E-06 5.2E-11   60.3   6.8   96   35-130    20-144 (740)
 99 PRK05617 enoyl-CoA hydratase;   98.2 7.6E-06 1.9E-10   56.7   7.4  102   34-135    14-148 (356)
100 PRK08788 enoyl-CoA hydratase;   98.1 1.8E-05 4.7E-10   54.3   8.3   94   95-235   119-213 (286)
101 TIGR02440 FadJ fatty oxidation  97.8 0.00041   1E-08   45.8  10.6  164   33-242     6-198 (732)
102 KOG1681 consensus               97.8 0.00025 6.3E-09   47.2   9.2  165   32-242    26-228 (292)
103 PRK12319 acetyl-CoA carboxylas  97.7 0.00043 1.1E-08   45.7   9.1  122   51-230    85-214 (256)
104 PRK05724 acetyl-CoA carboxylas  97.6 0.00081 2.1E-08   44.0   9.2  122   51-230   137-266 (318)
105 CHL00198 accA acetyl-CoA carbo  97.5  0.0012   3E-08   43.0   9.1  122   51-230   141-270 (322)
106 COG0447 MenB Dihydroxynaphthoi  97.5  0.0025 6.5E-08   40.9  10.4  158   35-241    26-219 (282)
107 TIGR02280 PaaB1 phenylacetate   97.4 0.00057 1.5E-08   44.9   7.0  162   35-242     6-196 (259)
108 PRK07189 malonate decarboxylas  97.4 0.00082 2.1E-08   43.9   7.3   83   51-133    90-184 (302)
109 TIGR03133 malonate_beta malona  97.2  0.0023 5.9E-08   41.1   7.7   83   51-133    81-175 (274)
110 KOG1679 consensus               97.1  0.0016 4.1E-08   42.1   6.5  134   51-231    61-213 (291)
111 TIGR03222 benzo_boxC benzoyl-C  97.1 0.00051 1.3E-08   45.2   3.8   74   52-125    52-148 (548)
112 TIGR03200 dearomat_oah 6-oxocy  97.0  0.0025 6.3E-08   40.9   6.4   97   39-135    39-163 (360)
113 PRK05654 acetyl-CoA carboxylas  96.9   0.021 5.4E-07   35.1  10.3  125   51-241   146-280 (288)
114 COG0825 AccA Acetyl-CoA carbox  96.8  0.0033 8.4E-08   40.1   5.7  120   53-230   139-266 (317)
115 pfam00549 Ligase_CoA CoA-ligas  96.6    0.01 2.6E-07   37.1   7.2   72   38-109    23-96  (128)
116 TIGR01929 menB naphthoate synt  96.6   0.038 9.7E-07   33.5   9.7  157   35-241    11-219 (278)
117 TIGR00513 accA acetyl-CoA carb  96.5  0.0066 1.7E-07   38.2   5.5  121   52-228   144-273 (329)
118 PRK08184 enoyl-CoA hydratase;   96.5  0.0015 3.8E-08   42.3   1.9   73   52-126    67-161 (558)
119 PTZ00187 succinyl-CoA syntheta  96.5   0.011 2.9E-07   36.7   6.5   71   36-109   162-257 (309)
120 COG0777 AccD Acetyl-CoA carbox  96.3   0.094 2.4E-06   31.0  10.4  125   51-241   144-278 (294)
121 COG0074 SucD Succinyl-CoA synt  96.1   0.033 8.5E-07   33.8   7.3   71   35-108   145-240 (293)
122 KOG0016 consensus               96.0    0.12 3.1E-06   30.2   9.8  140   50-236    37-201 (266)
123 PRK05678 succinyl-CoA syntheta  95.6   0.048 1.2E-06   32.8   6.3   71   35-109   145-240 (289)
124 pfam08496 Peptidase_S49_N Pept  95.6   0.092 2.3E-06   31.0   7.7   23   68-91     99-121 (154)
125 KOG1682 consensus               95.4    0.23   6E-06   28.5  10.7  142   52-241    63-223 (287)
126 COG0793 Prc Periplasmic protea  95.3    0.15   4E-06   29.6   8.0   78   38-116   205-307 (406)
127 TIGR03134 malonate_gamma malon  95.0   0.074 1.9E-06   31.6   5.9   78   53-130    53-142 (238)
128 CHL00174 accD acetyl-CoA carbo  95.0     0.3 7.5E-06   27.8  11.0  138   37-241   130-300 (305)
129 TIGR00515 accD acetyl-CoA carb  94.8    0.16 4.1E-06   29.5   7.0  139   36-240   113-282 (292)
130 pfam06833 MdcE Malonate decarb  94.7    0.11 2.8E-06   30.6   6.0   78   53-130    51-140 (234)
131 TIGR02437 FadB fatty oxidation  94.6    0.34 8.6E-06   27.5   8.4  139   51-238    38-199 (716)
132 pfam03572 Peptidase_S41 Peptid  94.3    0.24   6E-06   28.5   6.9   81   38-119     2-110 (166)
133 COG3904 Predicted periplasmic   93.8    0.55 1.4E-05   26.1  10.6   89   37-130    75-166 (245)
134 smart00245 TSPc tail specific   93.6    0.57 1.4E-05   26.1   7.9   55   36-91     28-84  (192)
135 pfam01740 STAS STAS domain. Th  93.1    0.73 1.9E-05   25.4   8.7   67   34-100     6-76  (106)
136 PRK11186 carboxy-terminal prot  92.9    0.65 1.7E-05   25.7   7.3   40   50-90    370-410 (673)
137 cd07560 Peptidase_S41_CPP C-te  92.9    0.77   2E-05   25.2   8.4   54   37-91     49-104 (211)
138 TIGR02717 AcCoA-syn-alpha acet  92.9    0.27 6.9E-06   28.1   5.2   99   35-150   153-274 (457)
139 pfam01039 Carboxyl_trans Carbo  91.8       1 2.6E-05   24.4   7.1   81   51-133    79-167 (487)
140 cd07042 STAS_SulP_like_sulfate  89.7     1.6 4.1E-05   23.2   9.1   70   33-102     5-78  (107)
141 cd07563 Peptidase_S41_IRBP Int  89.5     1.7 4.3E-05   23.1   7.8   79   37-118    64-179 (250)
142 TIGR01016 sucCoAbeta succinyl-  88.7     1.9 4.9E-05   22.7   6.4   58   50-110   295-356 (389)
143 PRK00696 sucC succinyl-CoA syn  88.5     1.9 4.9E-05   22.8   6.3  136   48-192    26-191 (388)
144 KOG1684 consensus               87.9     2.2 5.5E-05   22.4   6.7  112   37-148    47-194 (401)
145 TIGR01088 aroQ 3-dehydroquinat  87.2     1.5 3.9E-05   23.3   5.1   62   52-119    56-122 (144)
146 PRK13643 cbiO cobalt transport  86.9       2 5.1E-05   22.6   5.6   25  163-187   168-192 (288)
147 PRK09483 response regulator; P  85.9     2.8 7.1E-05   21.7   9.6  168   41-226    27-211 (216)
148 cd07562 Peptidase_S41_TRI Tric  85.9     2.8 7.1E-05   21.7   7.3   83   33-119    84-186 (266)
149 PRK13647 cbiO cobalt transport  85.9     2.7 6.9E-05   21.8   5.8   95   52-153   145-239 (273)
150 PRK13638 cbiO cobalt transport  84.2     3.1 7.9E-05   21.4   5.5   96   51-152   142-237 (271)
151 PRK13636 cbiO cobalt transport  84.0     3.2 8.1E-05   21.4   5.4   21  165-185   167-187 (285)
152 PRK13639 cbiO cobalt transport  83.0     3.3 8.3E-05   21.3   5.1   21  165-185   163-183 (275)
153 PRK13631 cbiO cobalt transport  81.6     2.4 6.2E-05   22.1   4.1   25  163-187   200-224 (320)
154 KOG1255 consensus               81.2     4.3 0.00011   20.5   6.4   44   53-103    83-126 (329)
155 PRK13649 cbiO cobalt transport  81.1     4.4 0.00011   20.5   5.5   24  163-186   169-192 (280)
156 PRK13646 cbiO cobalt transport  80.4     4.6 0.00012   20.3   5.3   21  165-185   171-191 (286)
157 cd07561 Peptidase_S41_CPP_like  80.0     4.7 0.00012   20.3   7.7   68   34-102    62-131 (256)
158 PRK13651 cobalt transporter AT  80.0     4.8 0.00012   20.2   5.3   25  163-187   185-209 (304)
159 pfam01515 PTA_PTB Phosphate ac  78.1     5.4 0.00014   19.9   6.4   32  195-226    88-119 (319)
160 PRK13641 cbiO cobalt transport  78.0     5.5 0.00014   19.9   5.2   25  163-187   169-193 (286)
161 PRK09604 putative DNA-binding/  78.0     3.6 9.1E-05   21.0   4.0   50   52-103    54-110 (335)
162 CHL00131 ycf16 sulfate ABC tra  77.7     5.6 0.00014   19.8   5.6   26   69-94    172-197 (252)
163 cd00578 L-fuc_L-ara-isomerases  76.9     5.9 0.00015   19.7   7.3   61   38-105    37-97  (452)
164 PRK13637 cbiO cobalt transport  76.7       6 0.00015   19.6   5.0   26  163-188   168-193 (287)
165 cd06567 Peptidase_S41 C-termin  75.3     6.5 0.00017   19.4   8.2   78   38-117    61-165 (224)
166 pfam02503 PP_kinase Polyphosph  74.9     6.6 0.00017   19.4   5.4   54   50-107   345-399 (678)
167 COG0528 PyrH Uridylate kinase   73.2     7.3 0.00019   19.1   5.3  101   65-168     4-114 (238)
168 PTZ00340 O-sialoglycoprotein e  72.8     4.9 0.00012   20.2   3.6   51   51-103    58-115 (348)
169 PRK13633 cobalt transporter AT  72.7     7.5 0.00019   19.0   5.9   21  165-185   171-191 (281)
170 PRK13648 cbiO cobalt transport  72.5     7.5 0.00019   19.0   4.9   14  221-234   217-230 (269)
171 PRK09390 fixJ response regulat  72.2     7.7  0.0002   18.9  10.1  136   49-206    35-175 (202)
172 PRK05443 polyphosphate kinase;  71.9     7.8  0.0002   18.9   5.4   54   50-107   352-406 (692)
173 PRK10575 iron-hydroxamate tran  71.7     7.9  0.0002   18.9   6.2   22  164-185   172-193 (265)
174 pfam04273 DUF442 Putative phos  71.2     8.1 0.00021   18.8   5.2   73   38-113    31-103 (110)
175 PRK13635 cbiO cobalt transport  70.4     8.5 0.00022   18.7   5.0   94   51-152   146-241 (279)
176 TIGR00853 pts-lac PTS system,   70.1     5.6 0.00014   19.8   3.4   81   69-161    48-130 (142)
177 PRK11231 fecE iron-dicitrate t  69.5     8.8 0.00023   18.6   6.6   17   77-93    168-184 (255)
178 TIGR01369 CPSaseII_lrg carbamo  69.3     8.9 0.00023   18.5   5.0  111   64-187     4-140 (1089)
179 cd06844 STAS Sulphate Transpor  68.0     9.5 0.00024   18.4   8.9   67   35-101     6-76  (100)
180 pfam01220 DHquinase_II Dehydro  67.2     9.8 0.00025   18.3   4.5   66   51-123    54-124 (140)
181 PRK13640 cbiO cobalt transport  66.8      10 0.00025   18.2   5.4   23  164-186   169-191 (283)
182 TIGR01326 OAH_OAS_sulfhy O-ace  66.3     2.3   6E-05   22.2   0.8   78   48-130   127-210 (434)
183 COG0045 SucC Succinyl-CoA synt  65.8      10 0.00027   18.1   7.4   90   98-192    90-189 (387)
184 PRK13632 cbiO cobalt transport  65.7      10 0.00027   18.1   5.5   35   58-94    156-190 (273)
185 PRK13634 cbiO cobalt transport  65.5      11 0.00027   18.1   4.5   23  164-186   157-179 (276)
186 PRK10253 iron-enterobactin tra  65.1      11 0.00027   18.0   5.9   25   69-93    165-189 (265)
187 PRK07811 cystathionine gamma-s  64.8     5.6 0.00014   19.8   2.5   62   55-121   134-198 (386)
188 PRK13526 glutamine amidotransf  64.4      11 0.00028   17.9   5.1   65   37-105     4-81  (179)
189 PRK13644 cbiO cobalt transport  63.6      11 0.00029   17.8   5.8   26   69-94    158-183 (274)
190 PRK09958 DNA-binding transcrip  63.1      12  0.0003   17.8  10.0  149   41-207    25-178 (204)
191 PRK09580 sufC cysteine desulfu  62.7      12  0.0003   17.7   6.4   38   56-95    156-193 (248)
192 TIGR00612 ispG_gcpE 4-hydroxy-  61.7      12 0.00032   17.6   4.8   75   49-126    40-118 (633)
193 PRK08249 cystathionine gamma-s  61.3     5.1 0.00013   20.0   1.8   49   56-109   141-190 (398)
194 TIGR03410 urea_trans_UrtE urea  60.7      13 0.00033   17.5   5.7   14  165-178   157-170 (230)
195 PRK13645 cbiO cobalt transport  59.6      14 0.00034   17.4   4.9   25  163-187   174-198 (289)
196 cd00466 DHQase_II Dehydroquina  59.2      14 0.00035   17.4   5.0   66   51-123    53-123 (140)
197 PRK07810 O-succinylhomoserine   59.1     5.8 0.00015   19.7   1.8   49   56-109   150-199 (406)
198 PRK06234 methionine gamma-lyas  59.0     7.2 0.00018   19.1   2.2   15  141-155   120-134 (399)
199 PRK13548 hmuV hemin importer A  58.5      14 0.00036   17.3   6.3   19  165-183   166-184 (257)
200 PRK13650 cbiO cobalt transport  57.9      14 0.00037   17.2   5.3   26   69-94    159-184 (276)
201 PRK12443 uridylate kinase; Rev  57.7      15 0.00037   17.2   6.3  100   66-169     4-115 (247)
202 TIGR02151 IPP_isom_2 isopenten  57.2      15 0.00038   17.1   3.8   55   51-109   139-201 (349)
203 PRK09028 cystathionine beta-ly  56.6     8.5 0.00022   18.7   2.3   31   56-87    138-169 (394)
204 PRK07232 malic enzyme; Reviewe  56.3      15 0.00039   17.1   8.1   29  215-243   457-487 (753)
205 PRK13015 3-dehydroquinate dehy  56.0      16  0.0004   17.0   4.1   66   51-123    55-125 (148)
206 PRK07582 cystathionine gamma-l  56.0     8.6 0.00022   18.6   2.2   43   64-110   134-177 (370)
207 PRK05395 3-dehydroquinate dehy  55.4      16 0.00041   17.0   5.2   66   51-123    55-125 (143)
208 PRK13547 hmuV hemin importer A  55.0      16 0.00041   16.9   5.9   25   69-93    177-201 (273)
209 PRK10535 macrolide transporter  54.8      16 0.00041   16.9   6.1   52   51-104   150-201 (648)
210 PRK08114 cystathionine beta-ly  53.5      17 0.00043   16.8   4.7   65   55-122   138-205 (395)
211 COG1042 Acyl-CoA synthetase (N  52.9      17 0.00044   16.7   4.6   73   35-111   154-249 (598)
212 cd03254 ABCC_Glucan_exporter_l  52.8      17 0.00045   16.7   6.2   12  222-233   213-224 (229)
213 PRK13652 cbiO cobalt transport  52.8      17 0.00045   16.7   5.1   21  165-185   163-183 (277)
214 PRK07050 cystathionine beta-ly  52.6      11 0.00028   18.0   2.3   50   56-110   142-192 (394)
215 PRK06767 methionine gamma-lyas  52.4      11 0.00028   17.9   2.3   50   56-110   138-188 (386)
216 COG1797 CobB Cobyrinic acid a,  52.1      18 0.00046   16.6   6.5  153   41-209    56-225 (451)
217 cd01976 Nitrogenase_MoFe_alpha  52.0      18 0.00046   16.6   4.8  109   50-159    83-208 (421)
218 PRK07812 O-acetylhomoserine am  51.8      18 0.00046   16.6   3.4   52   54-110   145-197 (436)
219 cd03291 ABCC_CFTR1 The CFTR su  51.6      18 0.00047   16.6   7.2   16  220-235   232-247 (282)
220 PRK05613 O-acetylhomoserine am  51.3      12 0.00031   17.7   2.3   52   54-110   145-197 (437)
221 PRK08248 O-acetylhomoserine am  50.7     9.5 0.00024   18.4   1.7   43   64-110   148-191 (431)
222 PRK09700 D-allose transporter   50.6      19 0.00048   16.5   5.9   74   50-129   150-224 (510)
223 cd00614 CGS_like CGS_like: Cys  50.6      11 0.00027   18.1   1.9   63   55-122   116-181 (369)
224 PRK12862 malic enzyme; Reviewe  50.6      19 0.00048   16.5   8.2   80   35-124   218-313 (761)
225 PRK05994 O-acetylhomoserine am  50.2      14 0.00036   17.3   2.5   51   55-110   139-190 (426)
226 PRK07504 O-succinylhomoserine   50.2     9.8 0.00025   18.3   1.7   15  141-155   121-135 (397)
227 PRK09536 btuD corrinoid ABC tr  50.2      19 0.00049   16.4   6.2   72   50-128   143-215 (409)
228 PRK09935 transcriptional regul  50.1      19 0.00049   16.4   9.6  148   43-207    31-184 (210)
229 PRK11288 araG L-arabinose tran  49.7      20  0.0005   16.4   5.4   76   49-130   144-220 (501)
230 PRK07671 cystathionine beta-ly  49.6      13 0.00033   17.5   2.3   62   55-122   125-190 (377)
231 PRK11264 putative amino-acid A  49.5      20  0.0005   16.4   4.8   12  141-152   123-134 (248)
232 PRK05670 anthranilate synthase  49.2      20 0.00051   16.3   3.7   39   65-106    43-82  (192)
233 PRK03695 vitamin B12-transport  48.9      20 0.00051   16.3   5.6   21  165-185   156-176 (245)
234 PRK08064 cystathionine beta-ly  48.6     8.9 0.00023   18.5   1.3   50   56-110   130-180 (390)
235 pfam01053 Cys_Met_Meta_PP Cys/  48.6      14 0.00035   17.4   2.3   52   54-110   127-179 (381)
236 PRK07503 methionine gamma-lyas  48.1      11 0.00028   17.9   1.7   50   56-110   142-192 (403)
237 COG0855 Ppk Polyphosphate kina  48.1      21 0.00053   16.2   5.4   54   49-106   353-407 (696)
238 TIGR02886 spore_II_AA anti-sig  48.1      21 0.00053   16.2   5.0   46   35-80      6-59  (106)
239 PRK08861 cystathionine gamma-s  48.0      15 0.00039   17.1   2.4   63   55-122   129-194 (388)
240 PRK13642 cbiO cobalt transport  47.5      21 0.00054   16.2   5.2   22  165-186   166-187 (277)
241 PRK06445 acetyl-CoA acetyltran  46.8      22 0.00055   16.1   3.6   69   65-134    53-122 (394)
242 cd03214 ABC_Iron-Siderophores_  46.8      22 0.00055   16.1   5.4   39   53-93    105-143 (180)
243 pfam01591 6PF2K 6-phosphofruct  46.5      22 0.00056   16.1   6.0   72   96-190    11-93  (223)
244 cd03215 ABC_Carb_Monos_II This  46.4      22 0.00056   16.1   5.9   14  165-178   130-143 (182)
245 cd07041 STAS_RsbR_RsbS_like Su  46.4      22 0.00056   16.1   7.7   59   36-94      9-70  (109)
246 PRK10403 transcriptional regul  45.9      22 0.00057   16.0   7.8  150   43-207    34-188 (215)
247 cd03236 ABC_RNaseL_inhibitor_d  45.9      22 0.00057   16.0   6.0   22  164-185   164-185 (255)
248 pfam06263 consensus             45.8      22 0.00057   16.0   5.8   50   52-105   237-286 (514)
249 cd03232 ABC_PDR_domain2 The pl  45.8      22 0.00057   16.0   6.4   20  165-184   134-153 (192)
250 TIGR00329 gcp metalloendopepti  45.3      23 0.00058   16.0   6.3   65   51-120    55-126 (337)
251 PRK07661 acetyl-CoA acetyltran  44.8      23 0.00059   15.9   3.5  145   53-225    29-179 (384)
252 PRK00286 xseA exodeoxyribonucl  44.8      23 0.00059   15.9   8.4   72   51-128   179-255 (443)
253 TIGR01788 Glu-decarb-GAD gluta  44.6      23  0.0006   15.9   3.3   61   49-114   191-256 (493)
254 PRK02991 D-serine dehydratase;  44.1      24 0.00061   15.8   4.7   47   46-92     79-128 (443)
255 PRK05967 cystathionine beta-ly  44.0      17 0.00042   16.8   2.1   63   55-122   140-205 (392)
256 PRK13525 glutamine amidotransf  43.9      24 0.00061   15.8   4.6   63   37-106     3-82  (191)
257 PRK06176 cystathionine gamma-s  43.7      14 0.00037   17.2   1.7   64   54-122   124-190 (379)
258 COG0075 Serine-pyruvate aminot  43.7      24 0.00062   15.8   5.4   72   48-126   117-199 (383)
259 PRK05968 hypothetical protein;  43.2      18 0.00046   16.6   2.2   42   65-110   147-189 (389)
260 COG4799 Acetyl-CoA carboxylase  42.9      25 0.00064   15.7   5.1   74   51-126   113-193 (526)
261 cd03217 ABC_FeS_Assembly ABC-t  42.8      25 0.00064   15.7   6.2   48   54-103   113-160 (200)
262 TIGR02915 PEP_resp_reg putativ  42.8      25 0.00064   15.7   4.3   56   41-102   139-199 (451)
263 PRK09653 eutD phosphotransacet  42.6      25 0.00064   15.7   7.9   12  224-235   232-243 (324)
264 TIGR01283 nifE nitrogenase MoF  42.6     8.7 0.00022   18.6   0.5  110   50-160   111-245 (470)
265 PRK01792 ribB 3,4-dihydroxy-2-  42.5      25 0.00064   15.7   3.1  158   75-253     7-176 (214)
266 TIGR00587 nfo apurinic endonuc  42.5      25 0.00064   15.7   3.4   68   51-119   151-225 (318)
267 PRK06774 para-aminobenzoate sy  42.0      26 0.00065   15.6   3.5   39   65-106    43-82  (191)
268 PRK07801 acetyl-CoA acetyltran  42.0      26 0.00066   15.6   3.4  152   53-225    34-196 (382)
269 cd03466 Nitrogenase_NifN_2 Nit  42.0      26 0.00066   15.6   4.5  105   49-155    68-187 (429)
270 KOG1683 consensus               41.9      26 0.00066   15.6   6.2   46  189-235   200-247 (380)
271 TIGR00651 pta phosphate acetyl  41.8      26 0.00066   15.6   3.6   10   84-93    117-126 (322)
272 cd06447 D-Ser-dehyd D-Serine d  41.6      26 0.00066   15.6   3.8   49   44-92     52-103 (404)
273 PRK08133 O-succinylhomoserine   41.5      22 0.00056   16.0   2.4   50   55-109   137-187 (391)
274 PRK05632 phosphate acetyltrans  41.2      26 0.00067   15.6  11.4   35  193-227   462-496 (702)
275 cd07062 Peptidase_S66_mccF_lik  40.9      27 0.00068   15.5   5.8   54   50-108    51-107 (308)
276 TIGR01431 adm_rel adenosine de  40.5      23 0.00058   15.9   2.4   23  170-192   462-484 (486)
277 cd03269 ABC_putative_ATPase Th  40.2      27  0.0007   15.5   6.4   11   51-61     40-50  (210)
278 PRK08134 O-acetylhomoserine am  40.1      23  0.0006   15.9   2.4   61   55-121   140-204 (433)
279 COG0143 MetG Methionyl-tRNA sy  40.0      28  0.0007   15.4   6.4   51  141-195   344-398 (558)
280 PRK06434 cystathionine gamma-l  39.9      24  0.0006   15.9   2.4   15  141-155   120-134 (384)
281 PRK06895 para-aminobenzoate sy  39.6      28 0.00071   15.4   3.0   39   65-106    44-83  (191)
282 PRK05939 hypothetical protein;  39.1      20  0.0005   16.4   1.8   62   55-121   121-185 (396)
283 cd03213 ABCG_EPDR ABCG transpo  38.8      29 0.00073   15.3   6.5   23  163-185   135-157 (194)
284 PRK08041 consensus              38.5      29 0.00074   15.3   2.8  152   55-226    36-197 (391)
285 PRK09522 bifunctional anthrani  38.3      29 0.00075   15.3   7.2  180   52-238    39-263 (531)
286 COG0659 SUL1 Sulfate permease   38.1      30 0.00075   15.3   8.8   63   37-100   444-509 (554)
287 COG0757 AroQ 3-dehydroquinate   37.7      30 0.00076   15.2   5.4   84   51-145    54-142 (146)
288 PTZ00107 hexokinase; Provision  37.7      30 0.00076   15.2   3.2  103   67-178   193-310 (485)
289 COG1512 Beta-propeller domains  37.5      30 0.00077   15.2   8.1   55   27-81     23-79  (271)
290 PRK10360 DNA-binding transcrip  37.2      30 0.00078   15.2   9.3  138   41-207    27-172 (196)
291 PRK06702 O-acetylhomoserine am  37.1      29 0.00074   15.3   2.5   63   54-122   137-203 (432)
292 PRK10744 phosphate transporter  36.7      31 0.00079   15.1   5.8   10   51-60     50-59  (257)
293 cd03218 ABC_YhbG The ABC trans  36.6      31 0.00079   15.1   6.0   18  165-182   159-176 (232)
294 TIGR02109 PQQ_syn_pqqE coenzym  36.5      22 0.00057   16.0   1.8   53   49-110    38-90  (363)
295 cd03238 ABC_UvrA The excision   36.1      32 0.00081   15.1   6.7   73   50-127    92-165 (176)
296 cd00617 Tnase_like Tryptophana  36.1      32 0.00081   15.1   4.1   62   51-114   139-203 (431)
297 PRK13549 xylose transporter AT  36.0      32 0.00081   15.1   6.2   74   50-129   148-222 (513)
298 cd00751 thiolase Thiolase are   35.8      32 0.00082   15.0   3.4   78   53-134    30-111 (386)
299 PRK08170 acetyl-CoA acetyltran  35.8      28 0.00071   15.4   2.2  170   53-228    35-219 (426)
300 PRK06091 membrane protein FdrA  35.7      32 0.00082   15.0   5.6   50   52-105   239-288 (555)
301 TIGR00519 asnASE_I L-asparagin  35.7      32 0.00082   15.0   6.0   53   57-110   235-287 (347)
302 pfam00763 THF_DHG_CYH Tetrahyd  35.7      32 0.00082   15.0   4.3   28   51-78     73-100 (117)
303 PRK13606 LPPG:FO 2-phospho-L-l  35.6      29 0.00074   15.3   2.3   56  116-180   185-243 (309)
304 TIGR01383 not_thiJ DJ-1 family  35.3      33 0.00083   15.0   4.1   65   38-110    33-109 (186)
305 PRK10895 putative ABC transpor  35.3      33 0.00083   15.0   6.3   17  165-181   163-179 (241)
306 COG1071 AcoA Pyruvate/2-oxoglu  35.3      33 0.00083   15.0   7.0  140   40-185   131-290 (358)
307 COG0512 PabA Anthranilate/para  35.2      29 0.00074   15.3   2.2   40   65-107    45-85  (191)
308 PRK11614 livF leucine/isoleuci  34.9      33 0.00085   14.9   6.3   11  166-176   164-174 (237)
309 PRK13546 teichoic acids export  34.7      33 0.00085   14.9   7.2   17   77-93    173-189 (264)
310 COG1618 Predicted nucleotide k  34.7      33 0.00085   14.9   4.5   49   53-105    90-139 (179)
311 PRK06460 hypothetical protein;  34.6      24  0.0006   15.9   1.7   52   54-110   120-172 (375)
312 PRK06084 O-acetylhomoserine am  34.4      30 0.00077   15.2   2.2   51   55-110   134-185 (424)
313 pfam00108 Thiolase_N Thiolase,  34.3      34 0.00086   14.9   2.7  154   55-226    36-197 (264)
314 TIGR01502 B_methylAsp_ase meth  34.1      34 0.00087   14.9   5.0   55   68-126   327-390 (414)
315 PRK07649 para-aminobenzoate/an  34.0      34 0.00087   14.8   2.8   39   65-106    43-82  (195)
316 cd04254 AAK_UMPK-PyrH-Ec UMP k  33.8      34 0.00088   14.8   8.1   97   67-166     1-107 (231)
317 cd03289 ABCC_CFTR2 The CFTR su  33.5      35 0.00089   14.8   5.2   16  165-180   164-179 (275)
318 PRK13238 tnaA tryptophanase; P  33.0      36 0.00091   14.8   4.9  120   51-179   164-307 (461)
319 COG5206 GPI8 Glycosylphosphati  32.7      36 0.00092   14.7   5.3   89   66-154   138-250 (382)
320 PRK10792 bifunctional 5,10-met  32.4      36 0.00093   14.7   4.2   98   49-167    75-175 (288)
321 PRK02628 nadE NAD synthetase;   32.3      37 0.00093   14.7   2.4   68   97-167   363-445 (678)
322 PRK08045 cystathionine gamma-s  32.3      30 0.00076   15.2   1.9   63   55-122   128-193 (386)
323 PRK11096 ansB L-asparaginase I  32.3      37 0.00093   14.7   5.5   65   29-93     16-97  (347)
324 TIGR02922 TIGR02922 conserved   31.8      22 0.00055   16.1   1.1   28   91-122    41-68  (69)
325 PRK01059 ATP:guanido phosphotr  31.5      38 0.00096   14.6   6.0   92   75-174   127-232 (351)
326 TIGR00838 argH argininosuccina  31.5      38 0.00096   14.6   2.7   95  169-265   282-386 (469)
327 pfam01990 ATP-synt_F ATP synth  31.4      38 0.00096   14.6   6.6   54   49-109    25-78  (92)
328 PRK10762 D-ribose transporter   31.2      38 0.00097   14.6   5.9   73   50-128   146-219 (501)
329 KOG1349 consensus               31.2      38 0.00097   14.6   3.5   68   62-130   135-213 (309)
330 PRK01077 cobyrinic acid a,c-di  31.1      38 0.00097   14.6   6.9   65   35-104   115-179 (451)
331 TIGR02035 D_Ser_am_lyase D-ser  30.9      39 0.00098   14.5   2.4  123   49-198    75-217 (431)
332 PRK08776 cystathionine gamma-s  30.8      39 0.00099   14.5   3.2   61   56-121   137-200 (405)
333 PRK09552 mtnX 2-hydroxy-3-keto  30.7      39 0.00099   14.5   2.8   17   38-54      4-20  (219)
334 KOG2245 consensus               30.5      39   0.001   14.5   3.6   27  170-196   377-403 (562)
335 cd03267 ABC_NatA_like Similar   30.0      40   0.001   14.4   5.9   18  229-246   157-174 (236)
336 PRK06025 acetyl-CoA acetyltran  29.8      40   0.001   14.4   3.3  155   55-228    39-201 (417)
337 pfam01921 tRNA-synt_1f tRNA sy  29.5      41   0.001   14.4   3.9   77   79-157    40-128 (355)
338 COG0311 PDX2 Predicted glutami  29.5      41   0.001   14.4   6.1   63   37-106     2-82  (194)
339 cd00267 ABC_ATPase ABC (ATP-bi  29.3      41   0.001   14.4   6.0   51   51-103    86-136 (157)
340 PRK10840 transcriptional regul  29.1      41  0.0011   14.3  11.4  146   41-207    29-185 (216)
341 pfam02065 Melibiase Melibiase.  29.0      42  0.0011   14.3   9.3   85   39-126   158-257 (395)
342 PRK08247 cystathionine gamma-s  29.0      30 0.00077   15.2   1.4   51   55-110   127-178 (366)
343 cd00981 arch_gltB Archaeal-typ  28.9      42  0.0011   14.3   3.3   25  168-192   192-216 (232)
344 PRK11124 artP arginine transpo  28.5      42  0.0011   14.3   5.6   17  165-181   167-183 (242)
345 cd04912 ACT_AKiii-LysC-EC-like  28.5      42  0.0011   14.3   3.2   59  124-185     7-65  (75)
346 TIGR01325 O_suc_HS_sulf O-succ  28.4      13 0.00032   17.6  -0.6   49  114-168    89-140 (386)
347 PRK08007 para-aminobenzoate sy  28.2      43  0.0011   14.2   3.3   39   65-106    43-82  (187)
348 TIGR03608 L_ocin_972_ABC putat  28.0      43  0.0011   14.2   6.3   25  222-246   130-155 (206)
349 cd03225 ABC_cobalt_CbiO_domain  27.9      43  0.0011   14.2   6.3   18  228-245   137-154 (211)
350 PRK10982 galactose/methyl gala  27.9      43  0.0011   14.2   6.0   73   50-128   139-212 (491)
351 KOG1532 consensus               27.9      43  0.0011   14.2   2.2   52   51-109   103-160 (366)
352 PRK04346 tryptophan synthase s  27.7      22 0.00056   16.1   0.6   89   68-159    76-167 (392)
353 PRK03353 ribB 3,4-dihydroxy-2-  27.4      44  0.0011   14.2   2.8  151   84-252    14-175 (217)
354 cd01743 GATase1_Anthranilate_S  27.1      45  0.0011   14.1   3.8   40   64-106    41-81  (184)
355 COG0533 QRI7 Metal-dependent p  26.8      45  0.0012   14.1   4.8   50   51-102    52-108 (342)
356 PRK09605 O-sialoglycoprotein e  26.6      46  0.0012   14.1   4.2   17   84-101    90-106 (536)
357 cd03230 ABC_DR_subfamily_A Thi  26.3      46  0.0012   14.0   6.2   23  163-185   119-141 (173)
358 PRK08857 para-aminobenzoate sy  26.1      47  0.0012   14.0   3.1   39   65-106    43-82  (192)
359 cd03130 GATase1_CobB Type 1 gl  25.9      47  0.0012   14.0   6.0   53   51-107    14-86  (198)
360 PRK13237 tyrosine phenol-lyase  25.9      47  0.0012   14.0   4.5   94   51-148   164-281 (459)
361 COG2873 MET17 O-acetylhomoseri  25.7      30 0.00077   15.2   1.0   74   54-133   137-214 (426)
362 cd05565 PTS_IIB_lactose PTS_II  25.7      48  0.0012   14.0   3.5   79   71-161     4-84  (99)
363 PRK09051 beta-ketothiolase; Pr  25.6      46  0.0012   14.0   1.9  157   55-228    37-201 (394)
364 TIGR01817 nifA Nif-specific re  25.3      48  0.0012   13.9   2.7   84   41-135   209-298 (574)
365 COG2179 Predicted hydrolase of  24.8      49  0.0013   13.8   2.9   83   62-155    24-113 (175)
366 cd03136 GATase1_AraC_ArgR_like  24.7      48  0.0012   13.9   1.8   50   64-118    63-112 (185)
367 PRK10771 thiQ thiamine transpo  24.6      50  0.0013   13.8   4.9   10  166-175   156-165 (233)
368 TIGR03191 benz_CoA_bzdO benzoy  24.4      50  0.0013   13.8   5.6   41   53-93    124-171 (430)
369 TIGR03249 KdgD 5-dehydro-4-deo  24.3      50  0.0013   13.8   3.1  104   49-156    24-137 (296)
370 TIGR00398 metG methionyl-tRNA   23.8      51  0.0013   13.7   6.6   96   76-188    14-112 (573)
371 PRK11247 ssuB aliphatic sulfon  23.8      52  0.0013   13.7   6.1   21  165-185   159-179 (257)
372 PRK13656 trans-2-enoyl-CoA red  23.7      52  0.0013   13.7   4.6   17   64-80      5-21  (400)
373 PRK01060 endonuclease IV; Prov  23.7      52  0.0013   13.7   4.8   59   51-110    89-151 (281)
374 cd03257 ABC_NikE_OppD_transpor  23.7      52  0.0013   13.7   5.0   18  228-245   148-165 (228)
375 pfam02978 SRP_SPB Signal pepti  23.7      41  0.0011   14.3   1.4   74  129-209    17-91  (100)
376 pfam06415 iPGM_N BPG-independe  23.6      52  0.0013   13.7   2.2   61   45-106     8-72  (223)
377 TIGR01415 trpB_rel pyridoxal-p  23.5      52  0.0013   13.7   2.1  107   54-181    75-191 (426)
378 PRK00133 metG methionyl-tRNA s  23.4      52  0.0013   13.7   6.2   50  141-194   338-392 (666)
379 TIGR01136 cysKM cysteine synth  23.3      53  0.0013   13.7   4.2   25  218-242   239-265 (315)
380 pfam09558 DUF2375 Protein of u  23.2      43  0.0011   14.2   1.4   30   91-124    41-70  (71)
381 cd03263 ABC_subfamily_A The AB  23.2      53  0.0014   13.7   6.2   10  166-175   160-169 (220)
382 PRK06690 acetyl-CoA acetyltran  22.9      54  0.0014   13.6   3.2  138   54-230    33-178 (361)
383 cd03246 ABCC_Protease_Secretio  22.9      54  0.0014   13.6   6.4   66   51-123   102-167 (173)
384 PRK05562 precorrin-2 dehydroge  22.5      55  0.0014   13.6   3.4   48  150-198   124-174 (222)
385 cd03260 ABC_PstB_phosphate_tra  22.2      55  0.0014   13.5   5.7   10  235-244   151-160 (227)
386 cd03759 proteasome_beta_type_3  22.0      41   0.001   14.4   1.1   16   43-58     48-63  (195)
387 cd03222 ABC_RNaseL_inhibitor T  21.8      56  0.0014   13.5   5.9   70   50-125    76-146 (177)
388 PRK09984 phosphonate/organopho  21.8      56  0.0014   13.5   5.6   19   50-68     43-62  (262)
389 COG2240 PdxK Pyridoxal/pyridox  21.7      57  0.0014   13.5   5.8   74   44-120    49-127 (281)
390 PRK11300 livG leucine/isoleuci  21.4      58  0.0015   13.4   5.9   21  165-185   179-199 (255)
391 TIGR00538 hemN oxygen-independ  21.3      58  0.0015   13.4   4.7  141   84-232    34-191 (462)
392 TIGR03333 salvage_mtnX 2-hydro  21.3      58  0.0015   13.4   2.8   14   41-54      4-17  (214)
393 TIGR01819 F420_cofD LPPG:Fo 2-  21.3      48  0.0012   13.9   1.3   57   99-155   213-272 (359)
394 cd03259 ABC_Carb_Solutes_like   21.2      58  0.0015   13.4   4.9   16  230-245   135-150 (213)
395 PRK04147 N-acetylneuraminate l  21.1      58  0.0015   13.4   3.4   60   50-109    23-86  (294)
396 PRK00014 ribB 3,4-dihydroxy-2-  21.0      59  0.0015   13.4   3.0  153   83-253    18-181 (230)
397 COG3453 Uncharacterized protei  20.8      59  0.0015   13.4   5.8   59   54-114    47-105 (130)
398 PRK13477 bifunctional pantoate  20.5      60  0.0015   13.3   4.6  187   93-283   280-505 (512)
399 PRK12331 oxaloacetate decarbox  20.4      60  0.0015   13.3  10.2  154   51-228   154-321 (463)
400 cd01977 Nitrogenase_VFe_alpha   20.4      60  0.0015   13.3   4.1  106   50-157    72-196 (415)
401 PRK09544 znuC high-affinity zi  20.1      61  0.0016   13.3   6.0   26   69-94    142-167 (251)
402 pfam00681 Plectin Plectin repe  20.1      61  0.0016   13.3   1.7   18  210-227    19-36  (45)
403 PRK09765 2-O-a-mannosyl-D-glyc  20.0      45  0.0012   14.1   0.9   40  134-177   179-218 (638)

No 1  
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants.   Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function.  During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=100.00  E-value=0  Score=420.79  Aligned_cols=206  Identities=34%  Similarity=0.623  Sum_probs=201.0

Q ss_pred             EEEEEEEEEEE--------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCCEE
Q ss_conf             28999976662--------------38699999999986189987999975888888899999999999841--478679
Q gi|254780747|r   37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVI  100 (293)
Q Consensus        37 ~i~~i~i~G~I--------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k--~~kpvv  100 (293)
                      .||++.++|+|              .+.+++.+.|+++.+|++||||+|+||||||+|.+++||+++|++++  .+|||+
T Consensus         1 ~IA~~~v~G~I~~~~~~~~~~~~Dg~~~~~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S~Eiy~~l~~~~k~~kkPVv   80 (224)
T TIGR00706         1 KIASLEVTGAIASDAALSILLFSDGVSPEDVLKKIKRIKDDKSIKALVLRIDSPGGTVVASEEIYEKLKKLKKEAKKPVV   80 (224)
T ss_pred             CEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             93588841266303442101256899756799998877408970069998637999752268999999863453088589


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             96033233223210001110001301353455565302102456777420422553155211234666789999887777
Q gi|254780747|r  101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD  180 (293)
Q Consensus       101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~  180 (293)
                      +|++++++|||||+|++||+|+|+|.|++|||||++++.++++|++|+||+.+.|++|+||+.++|+|.|+||+|+.+|+
T Consensus        81 ~~~g~~aaSGGYYia~aa~~I~A~~~t~tGSIGVIl~~~n~~~L~~k~GI~~~~iK~G~yKd~~~~~R~lt~eE~~~lQ~  160 (224)
T TIGR00706        81 ASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLLEKLGIEFEAIKSGEYKDIGSPTRELTPEERKILQS  160 (224)
T ss_pred             EEECCCCHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98368322679999813882463477420203755203579999986491565665166567898757762999999999


Q ss_pred             HHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             766666778999985149--99889988734982378899877980623898999999997418
Q gi|254780747|r  181 VVDSSYHWFVRLVSESRN--IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       181 ~l~~~~~~f~~~Va~~R~--~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                      ++|+.|++|++.|+++|+  |+.++++++||||+|+|+||++++|||+||+.++|+++|.++.+
T Consensus       161 ~v~~~Y~~F~~~V~~~R~nkl~~~~vK~~AdGRvf~GrqA~~l~LVD~lG~~d~A~~~l~~L~g  224 (224)
T TIGR00706       161 LVNESYEQFVQVVAKGRNNKLSVEDVKKFADGRVFTGRQALKLRLVDKLGTLDDALKWLAKLAG  224 (224)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEECHHHHHHCCCEECCCCHHHHHHHHHHHCC
T ss_conf             8888875789999984167789788765206860104334311460012898999999997449


No 2  
>PRK10949 protease 4; Provisional
Probab=100.00  E-value=0  Score=397.17  Aligned_cols=231  Identities=29%  Similarity=0.448  Sum_probs=213.8

Q ss_pred             CCCCCCEEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEE
Q ss_conf             5677872899997666238---------699999999986189987999975888888899999999999841-478679
Q gi|254780747|r   31 VEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVI  100 (293)
Q Consensus        31 ~~~~~~~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvv  100 (293)
                      ....+++||||.++|+|++         .+.+.+.|++|.+|++|||||||||||||++.+++.|+++|.++| ++||||
T Consensus       321 ~~~~~~~IAVI~a~G~Iv~G~~~~g~ig~dt~~~~lr~a~~D~~VKAvVLRVnSPGGSa~ASE~I~~el~~lk~~gKPVV  400 (618)
T PRK10949        321 PADTGGQIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVV  400 (618)
T ss_pred             CCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             88779838999968768548887886655899999999730867228999985899866789999999999984499799


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             96033233223210001110001301353455565302102456777420422553155211234666789999887777
Q gi|254780747|r  101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD  180 (293)
Q Consensus       101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~  180 (293)
                      ++|+++|||||||||++||+|||+|+|++|||||.+..|+++++++|+||+.+.+++|++.+. ++++++++++++.+|.
T Consensus       401 vSMG~vAASGGYwIa~~Ad~I~A~p~TITGSIGVfg~~p~~~~~l~~lGI~~D~V~t~~~a~~-s~~~~l~~~~~~~~q~  479 (618)
T PRK10949        401 VSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEFQQMMQL  479 (618)
T ss_pred             EEECCCCCCCCEEEECCCCEEEECCCCEEEECEEEEEHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf             997010156625885168769988986788640477610499999964952468854567778-8777999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHH
Q ss_conf             76666677899998514999889988734982378899877980623898999999997418776530120144211245
Q gi|254780747|r  181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF  260 (293)
Q Consensus       181 ~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  260 (293)
                      .+++.|+.|++.|+++|+|+.++++++++|++|+|++|+++||||++|++++|++.++++++..+ ..+..|+++.++..
T Consensus       480 ~i~~~Y~~Fl~~Va~gR~mt~e~Vd~iAqGRVWsG~~A~~~GLVD~LGgl~dAI~~Aa~lA~l~~-y~v~~~~~~~s~~e  558 (618)
T PRK10949        480 SIENGYKRFITLVADARHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKLKQ-WHLNWYVDEPTFFD  558 (618)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEECCCCCHHH
T ss_conf             99999999999998657999899998648837769999986893654999999999999749985-06786179999999


Q ss_pred             HHH
Q ss_conf             565
Q gi|254780747|r  261 CDL  263 (293)
Q Consensus       261 ~~~  263 (293)
                      ..+
T Consensus       559 ~~~  561 (618)
T PRK10949        559 MVM  561 (618)
T ss_pred             HHH
T ss_conf             999


No 3  
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=100.00  E-value=0  Score=381.07  Aligned_cols=201  Identities=28%  Similarity=0.404  Sum_probs=193.9

Q ss_pred             EEEEEEEEEEEC-------------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             289999766623-------------8699999999986189987999975888888899999999999841478679960
Q gi|254780747|r   37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        37 ~i~~i~i~G~I~-------------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      .||+|+++|+|.             +.+.+++.|++|.+|++||+|+|+||||||++.++++|+++|++++++|||++|+
T Consensus         1 giAvI~i~G~i~~~~~~~~~~~g~~~~~~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~~KPVva~~   80 (214)
T cd07022           1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV   80 (214)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             97999989899369876555777558999999999995099975899999798976899999999999860899899998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             33233223210001110001301353455565302102456777420422553155211234666789999887777766
Q gi|254780747|r  104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD  183 (293)
Q Consensus       104 ~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~  183 (293)
                      ++.|+|||||+||+||+|||+|+|++|||||++.+++++++++|+||+++++++|+||++++||+++++++|+.+|.+++
T Consensus        81 ~~~~aSggY~iAsaad~I~a~~~s~vGSIGv~~~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~~~~s~e~~~~~q~~ld  160 (214)
T cd07022          81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVD  160 (214)
T ss_pred             CCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             88115689999872570587776468764148861776888986795478740576332368756568899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             6667789999851499988998873498237889987798062389899999999
Q gi|254780747|r  184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       184 ~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                      ++|++|++.|+++|+++.+.++.. .|++|+|+||+++||||+||++++|++++.
T Consensus       161 ~~~~~F~~~Va~~R~~~~~~~~~~-~G~v~~g~~A~~~GLVD~iG~~~dai~~la  214 (214)
T cd07022         161 ALYAMFVAAVARNRGLSAAAVRAT-EGGVFRGQEAVAAGLADAVGTLDDALAALA  214 (214)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHH-CCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf             999999999998579997788871-698988999998599754699999999749


No 4  
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain.   Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function.  During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=378.69  Aligned_cols=235  Identities=29%  Similarity=0.491  Sum_probs=215.9

Q ss_pred             CCCCCEEEEEEEEEEECC----------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C-CCE
Q ss_conf             677872899997666238----------6999999999861899879999758888888999999999998414-7-867
Q gi|254780747|r   32 EDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-R-KPV   99 (293)
Q Consensus        32 ~~~~~~i~~i~i~G~I~~----------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~-kpv   99 (293)
                      .+..|+|++|.++|+|++          .+++.+.|+.|..||+|||||||||||||++++++.|++++..+|+ + |||
T Consensus       316 ~~~~~~iaiv~~~G~I~~G~~t~~nG~ggD~~a~lLr~a~~D~~iKAvvLRinSPGGsv~Ase~IR~e~~~~~~~GkKPV  395 (614)
T TIGR00705       316 YDVDDKIAIVYLEGSIVDGRDTEENGVGGDTVAALLRKARSDPDIKAVVLRINSPGGSVFASEIIRRELERLQARGKKPV  395 (614)
T ss_pred             CCCCCCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCE
T ss_conf             27988169997006423577566786003679999998707998128998863898634287899999999982689978


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             996033233223210001110001301353455565302102456777-4204225531552112346667899998877
Q gi|254780747|r  100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM  178 (293)
Q Consensus       100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k-~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~  178 (293)
                      |++|+.+||||||||||+||+|+|+|+|++||||+....|.|+.++|+ +||+.+.+.+++..+.+|.+++.++++...+
T Consensus       396 ivSMG~~AASGgYWiasaA~yIvA~p~TiTGSIGvfsvl~t~En~~~~y~Gv~~D~V~t~~la~~GS~~~~~t~~~~~~~  475 (614)
T TIGR00705       396 IVSMGAMAASGGYWIASAADYIVADPNTITGSIGVFSVLPTVENSLDRYIGVHVDGVSTSELANVGSLLRPLTEEEQAIM  475 (614)
T ss_pred             EEECCHHHHCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCEECEEECCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             98435023205300204557133478743100144532522554231000223163342464463223477884788886


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-----CCCCEEECC
Q ss_conf             777666667789999851499988998873498237889987798062389899999999741877-----653012014
Q gi|254780747|r  179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-----SIRKIKDWN  253 (293)
Q Consensus       179 ~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~-----~~~~~~~~~  253 (293)
                      |.-++..|+.|++.|+++|++++++++++++|++|+|+.|+++||||+||++++|++.+.+++...     ..-.++.|+
T Consensus       476 Q~~v~~~Y~~FL~~Vs~aR~ls~~~vd~vAqG~vw~G~dA~~~GLVD~LG~l~~AVa~Aa~~~~~rqdtaV~q~~v~~y~  555 (614)
T TIGR00705       476 QLSVEAGYERFLEVVSKARNLSPTQVDKVAQGRVWTGEDAVKNGLVDELGGLDEAVAKAAKLAELRQDTAVKQWSVEVYK  555 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf             33088899999999862303888899877568400015676638620268877899999999744776530111777860


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             4211245565110
Q gi|254780747|r  254 PPKNYWFCDLKNL  266 (293)
Q Consensus       254 ~~~~~~~~~~~~~  266 (293)
                      ..+..+.+.+...
T Consensus       556 ~~~~s~~~~ll~~  568 (614)
T TIGR00705       556 DEATSLISELLDN  568 (614)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             7863058889988


No 5  
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad 
Probab=100.00  E-value=0  Score=376.81  Aligned_cols=201  Identities=38%  Similarity=0.669  Sum_probs=196.1

Q ss_pred             EEEEEEEEEEEC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCC
Q ss_conf             289999766623-----86999999999861899879999758888888999999999998414-786799603323322
Q gi|254780747|r   37 HVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA  110 (293)
Q Consensus        37 ~i~~i~i~G~I~-----~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~  110 (293)
                      +|++|+++|+|.     +.+++++.|++|.+|++||+|+|+||||||+++++++|+++|++||+ +|||++|++++|+||
T Consensus         1 ~iavi~~~G~i~~~~~~~~~~i~~~l~~A~~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~~~KpV~a~~~~~aaSg   80 (208)
T cd07023           1 KIAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASG   80 (208)
T ss_pred             CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCH
T ss_conf             97999988788899986999999999999508997489999748996299999999999987514985999977711133


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             32100011100013013534555653021024567774204225531552112346667899998877777666667789
Q gi|254780747|r  111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV  190 (293)
Q Consensus       111 ~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~  190 (293)
                      |||+||+||+|||+|+|++|||||++++++++++++|+||+++++++|+||++++||++||+++++++|.+++++|++|+
T Consensus        81 ~Y~lAs~ad~I~a~p~s~vGSIGv~~~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~~~~s~e~~~~~~~~ld~~~~~F~  160 (208)
T cd07023          81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV  160 (208)
T ss_pred             HHHHHHCCCEEEECCCCEECCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             45655128779977876333200366326889999976970699952562334577778999999999999999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             99985149998899887349823788998779806238989999999
Q gi|254780747|r  191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL  237 (293)
Q Consensus       191 ~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l  237 (293)
                      +.|+++|+++.++++++++|++|+|+||+++||||+||+++++++++
T Consensus       161 ~~Va~~R~~~~~~v~~~~~g~v~~~~~A~~~GLiD~ig~~~eai~~~  207 (208)
T cd07023         161 DVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA  207 (208)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             99998669998999998579867099999869975339999999975


No 6  
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=100.00  E-value=0  Score=369.84  Aligned_cols=201  Identities=30%  Similarity=0.477  Sum_probs=192.8

Q ss_pred             EEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC
Q ss_conf             2899997666238---------6999999999861899879999758888888999999999998414-78679960332
Q gi|254780747|r   37 HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM  106 (293)
Q Consensus        37 ~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~  106 (293)
                      .|++|+++|+|++         .+++.+.|++|.+|++||||+|+||||||++.++++|+++|+++|+ +|||++|+++.
T Consensus         1 ~iaVi~~~G~I~~~~~~~~~~~~~~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~~~~~~~KPVva~~~~~   80 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGA   80 (211)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             98999988788379887887589999999999952899738999976969768999999999999864699799997784


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             33223210001110001301353455565302102456777420422553155211234666789999887777766666
Q gi|254780747|r  107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY  186 (293)
Q Consensus       107 ~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~  186 (293)
                      |+|||||+||+||+|||+|++++|||||++.+++++++++|+||+++.++++++|+ .++++++|+++|+.+|.+++++|
T Consensus        81 aaSggY~iAsaad~I~a~p~s~vGSIGV~~~~~~~~~~~~k~Gi~~~~i~~~~~~~-~~~~~~lt~e~r~~~q~~vd~~~  159 (211)
T cd07019          81 AASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD-VSITRALPPEAQLGLQLSIENGY  159 (211)
T ss_pred             CCHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCHHHHHHHCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             43488999855898998488735655689983376777774683578997456666-78889999999999999999999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             7789999851499988998873498237889987798062389899999999
Q gi|254780747|r  187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       187 ~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                      ++|++.|+++|+++.+.++++++|++|+|++|+++||||+||++++|++++.
T Consensus       160 ~~F~~~Va~~R~~~~~~v~~~a~G~v~~g~~A~~~GLiD~ig~~~~ai~~aa  211 (211)
T cd07019         160 KRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAA  211 (211)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf             9999999976799957837546855787899998699655699999999759


No 7  
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00  E-value=0  Score=359.47  Aligned_cols=212  Identities=33%  Similarity=0.553  Sum_probs=203.1

Q ss_pred             CCEEEEEEEEEEEC---------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             87289999766623---------869999999998618998799997588888889999999999984147867996033
Q gi|254780747|r   35 SPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE  105 (293)
Q Consensus        35 ~~~i~~i~i~G~I~---------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~  105 (293)
                      .++|++|+++|.|.         +.+++.+.|+++..|+++|+|+|+||||||++.++++|+++|++++++|||++++++
T Consensus        58 ~~~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~  137 (317)
T COG0616          58 SKVIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGG  137 (317)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             85699997454653487763446677799999998508998738999989498468999999999987532989999887


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      +|+||||||||+||+|||+|+|++|||||+++.+++.++++|+||+.+.+++|+||+.++||+++++++++.+|.++++.
T Consensus       138 ~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~  217 (317)
T COG0616         138 YAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET  217 (317)
T ss_pred             CCCCHHHHHHHCCCEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             32028999984078798779860213501774566899998659860344232421114533336989999999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             6778999985149998899887349823788998779806238989999999974187765
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI  246 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~  246 (293)
                      |+.|++.|+++|++..+.+..+++|++|+|++|+++||||++|++++++.++.+..+....
T Consensus       218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~~~  278 (317)
T COG0616         218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDV  278 (317)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHCCCEECHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf             9999999972679970156787357686466624244427646788999999874366655


No 8  
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=100.00  E-value=0  Score=352.07  Aligned_cols=190  Identities=24%  Similarity=0.360  Sum_probs=182.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             86999999999861899879999758888888999999999998414-78679960332332232100011100013013
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS  127 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s  127 (293)
                      +.+++++.|++|++|++||||+|++|||||+++++++|+++|++||+ +||||+|.+ .++|++||+||+||+|||+|++
T Consensus        30 ~l~~l~~~l~~A~~D~~ik~vvL~i~s~gg~~~~~~ei~~ai~~~k~~gKpVva~~~-~~~s~~Y~lAs~ad~I~a~p~~  108 (222)
T cd07018          30 SLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYAD-GYSQGQYYLASAADEIYLNPSG  108 (222)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC-CCCCHHHHHHHHCCEEEECCCC
T ss_conf             599999999998339996389996689997699999999999999860993999952-5661665887527855776887


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             5345556530210245677742042255315521123466--67899998877777666667789999851499988998
Q gi|254780747|r  128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL  205 (293)
Q Consensus       128 ~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~  205 (293)
                      .+|++|+.++.++++++++|+||+++++++|+||++++||  ++||+++|++++++++++|++|++.|+++|+++.+.++
T Consensus       109 ~vg~iGv~~~~~~~k~ll~klGi~~~~~~~G~yK~a~epf~~~~~s~e~re~~~~~l~~~~~~f~~~Va~~R~~~~~~~~  188 (222)
T cd07018         109 SVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALE  188 (222)
T ss_pred             EEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             68776437542127889998698069984245466768655566589999999999999999999999964799989999


Q ss_pred             HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             8734982378899877980623898999999997
Q gi|254780747|r  206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA  239 (293)
Q Consensus       206 ~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~  239 (293)
                      ++++|++|+|++|+++||||+||+++|+++++++
T Consensus       189 ~~~~~~~~~~~~A~~~GLVD~lg~~de~~~~l~~  222 (222)
T cd07018         189 ALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE  222 (222)
T ss_pred             HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf             9984798729999986997507989999998509


No 9  
>PRK10949 protease 4; Provisional
Probab=100.00  E-value=0  Score=318.55  Aligned_cols=240  Identities=19%  Similarity=0.245  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCEEEEEEEEEEECCH---------------------------HHH
Q ss_conf             58999999999999999999997--0565556778728999976662386---------------------------999
Q gi|254780747|r    3 FVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDS---------------------------QEL   53 (293)
Q Consensus         3 ~~~~~i~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~i~~i~i~G~I~~~---------------------------~~l   53 (293)
                      |.-+.|.+.|++++++.++.+++  ........++..+++++++|+|+++                           .++
T Consensus        21 ~~R~~i~nl~f~~~i~~~v~~~~~~~~~~~~~~~~~~aL~ldl~G~lvdq~~~~~p~~~l~~~~~g~~~~~~~e~~L~Di  100 (618)
T PRK10949         21 FVREMVLNLFFIFLILVGVGIWMQVSNGDSPETASRGALLLDISGVIVDKPSSNNKLRQLGRQLLGASSDRLQENSLFDI  100 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             99999999999999999999987404788855687857998488607616888885999999851788775441029999


Q ss_pred             HHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9999998618998799997588-8888899999999999841-4786799603323322321000111000130135345
Q gi|254780747|r   54 IERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS  131 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs  131 (293)
                      ++.|++|++|++|+||+|+++. .|++.+..++|++||.+|| ++|||+||.+.+ ..++||+||+||+||++|.+.+..
T Consensus       101 v~aI~~Aa~D~rI~givLdl~~~~g~~~a~l~eI~~AL~~FK~SGK~ViAy~d~y-sq~~YyLAS~AD~I~L~P~G~v~l  179 (618)
T PRK10949        101 VNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDNY-SQGQYYLASFANKIWLSPQGVVDL  179 (618)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCC-CCCCEEEEEECCEEEECCCCEEEE
T ss_conf             9999985149982599997777888788999999999999998199399996677-853010211077789889966878


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----H
Q ss_conf             556530210245677742042255315521123466--6789999887777766666778999985149998899----8
Q gi|254780747|r  132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----L  205 (293)
Q Consensus       132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~----~  205 (293)
                      .|+..+.+|||++|||+||+++++++|+||+++|||  .+||+++|++.+.+++++|++|++.|+++|+++.+++    +
T Consensus       180 ~Gl~~~~~y~K~lLdKlgI~~~vfrvG~YKSAvEpf~r~~MS~e~re~~~~~l~~lw~~~~~~Ia~~R~l~~~~l~~~~~  259 (618)
T PRK10949        180 HGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQ  259 (618)
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             66301177899999974982899981375674651114459999999999999999999999999865999789777799


Q ss_pred             HHHC----CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             8734----9823788998779806238989999999974187
Q gi|254780747|r  206 VLSD----GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD  243 (293)
Q Consensus       206 ~~~~----g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~  243 (293)
                      .+.+    -...+++.|++.||||++++.+++.+++.+..+.
T Consensus       260 ~~~~~l~~~~g~~a~~Al~~gLVD~l~~~~e~~~~l~~~~g~  301 (618)
T PRK10949        260 GILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKAFGW  301 (618)
T ss_pred             HHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             999999870884099998769985467688999999998488


No 10 
>PRK11778 putative periplasmic protease; Provisional
Probab=100.00  E-value=0  Score=313.01  Aligned_cols=236  Identities=21%  Similarity=0.345  Sum_probs=195.0

Q ss_pred             CCCCEEEEEEEEEEECCH--H----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf             778728999976662386--9----99999999861899879999758888888999999999998414-7867996033
Q gi|254780747|r   33 DNSPHVARIAIRGQIEDS--Q----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHE  105 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I~~~--~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~  105 (293)
                      ...|.+.|++.+|-|.-+  +    ++..-|..|..+   ..|+|+++||||.+.+..-.+..|.++|. +.|++++++.
T Consensus        66 ~~~~r~fvldF~Gdi~As~v~~LReeitaiL~~a~~~---DeV~~rles~GG~v~~yglaasql~rlr~~~i~ltv~vd~  142 (317)
T PRK11778         66 LGKPRVFVLDFKGDIDASEVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVCVDK  142 (317)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             5786399995468603776777899999999748789---8699999789956660577999999998679928999701


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      .|||||||+||+||+|||+|++++|||||+++.|+|.++|+|+||+++.+++|+||+.++||.++|+++|+.++..++++
T Consensus       143 VAASGGY~mAc~ADkIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~  222 (317)
T PRK11778        143 VAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEET  222 (317)
T ss_pred             EECCCCEEEEECCCEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             30243022652188799878634653210166658899999859965998145677777888999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf             67789999851499988998873498237889987798062389899999999741877653012014421124556511
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN  265 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (293)
                      |++|++.|+++|+.  .+++++++|++|+|++|+++||||+|||.|+++..+.+....   ..+ .|.++++ +... ..
T Consensus       223 h~~Fk~~Va~~Rp~--~did~VAtGrvW~G~qAlelGLVDeIgTsDd~l~~~~~~~~v---~~v-~~~~kk~-l~~r-l~  294 (317)
T PRK11778        223 HQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMEEREV---LKV-RYQQKKK-LIER-LG  294 (317)
T ss_pred             HHHHHHHHHHCCCC--CCHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHCCCCE---EEE-EEEECCC-HHHH-HH
T ss_conf             99999999863984--547875687577577698759974256689999987233848---999-9750799-8999-88


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             04778788888887
Q gi|254780747|r  266 LSISSLLEDTIPLM  279 (293)
Q Consensus       266 ~~~~~~~~~~~~~l  279 (293)
                      ...+..+...+.-+
T Consensus       295 ~~~~~~~~~~~~~~  308 (317)
T PRK11778        295 GSAAESADRLLLRL  308 (317)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 11 
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=100.00  E-value=1.7e-43  Score=293.77  Aligned_cols=162  Identities=31%  Similarity=0.491  Sum_probs=149.9

Q ss_pred             EEEEEEEECC-------------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECC
Q ss_conf             9997666238-------------699999999986189987999975888888899999999999841-47867996033
Q gi|254780747|r   40 RIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHE  105 (293)
Q Consensus        40 ~i~i~G~I~~-------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvva~~~~  105 (293)
                      +|.++|+|.+             .+++++.|++|.+|++||+|+|+||||||++.++++|+++|+++| .+|||++++++
T Consensus         1 vi~~~G~I~~g~~~~~~~~g~~~~~~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~KPV~a~~~~   80 (177)
T cd07014           1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG   80 (177)
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             98999789768887888888716999999999995199962899996189818899999999999988659989999778


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      .|+|||||+||+||+|||+|++++|||||+..                                     ++.+|.++|++
T Consensus        81 ~aASg~Y~iA~aad~I~a~p~s~vGSIGV~~~-------------------------------------~~~~q~~vd~~  123 (177)
T cd07014          81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV-------------------------------------QLADQLSIENG  123 (177)
T ss_pred             CCCCHHHHHHHCCCEEEECCCCEEEEEEEEEE-------------------------------------HHHHHHHHHHH
T ss_conf             56205778761278899869972776269866-------------------------------------68999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             6778999985149998899-8873498237889987798062389899999999
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                      |++|++.|+++|+++.+++ +.+++|++|+|+||+++||||+||+++|+++++.
T Consensus       124 ~~~Fv~~Va~~R~~~~~~~~~~~~~G~v~~g~~A~~~GLiD~iG~~~dai~~~A  177 (177)
T cd07014         124 YKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKLA  177 (177)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf             999999999747999678687606867788999998699765699999999759


No 12 
>pfam01343 Peptidase_S49 Peptidase family S49.
Probab=100.00  E-value=1.2e-43  Score=294.67  Aligned_cols=152  Identities=34%  Similarity=0.590  Sum_probs=148.5

Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf             84147867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r   92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN  171 (293)
Q Consensus        92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s  171 (293)
                      .+|++||||+|++++|+||||||||+||+|||+|++++|||||+++.++++++++|+||+++++++|+||++++||++||
T Consensus         2 ~~~~~KPV~a~~~~~aaSg~Y~lAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s   81 (154)
T pfam01343         2 ALRAGKPVVAYAGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKIDTIRAGEYKDAGSLFRPLT   81 (154)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             75589979999788457799999986698998799747467324011528799986487644663265455557567799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             999887777766666778999985149998899887349823788998779806238989999999974187
Q gi|254780747|r  172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD  243 (293)
Q Consensus       172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~  243 (293)
                      +++|+++|.+++++|++|++.|+++|+++.++++++++|++|+|++|+++||||+||+++|+++++.++++.
T Consensus        82 ~e~r~~~~~~l~~~~~~F~~~Va~~R~~~~~~~~~~~~g~v~~g~~A~~~GLvD~ig~~deai~~l~~~~g~  153 (154)
T pfam01343        82 PEEREALQRMLDETYQMFVQKVAKNRNLTVDQVDKIAEGRVWTGQQAVEAGLVDELGTLDDAIARLAELAGV  153 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             999999999999999999999998669998999998679987799999879967379999999999998099


No 13 
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain.   Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function.  During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=100.00  E-value=4.9e-39  Score=265.63  Aligned_cols=238  Identities=23%  Similarity=0.292  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCEEEEEEEEEEECCH---------------------------HHHH
Q ss_conf             9999999999999999999705655----56778728999976662386---------------------------9999
Q gi|254780747|r    6 KKIKTRYVMLSLVTLTVVYFSWSSH----VEDNSPHVARIAIRGQIEDS---------------------------QELI   54 (293)
Q Consensus         6 ~~i~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~i~~i~i~G~I~~~---------------------------~~l~   54 (293)
                      |.+...+++|.|+.+.+..++...+    ....+..-+.+++.|.|.+.                           .+++
T Consensus         8 R~l~lnvvfl~L~~~~~~~l~~~~s~~~s~~~~~~galLL~~~G~~~~~~d~~~r~~~l~~~l~G~~~~~lq~~~l~dvv   87 (614)
T TIGR00705         8 RELVLNVVFLLLVLLGVKILVILSSGEASKKLESKGALLLDLAGVVVDVQDESPRLSDLLQELLGNQKERLQKISLFDVV   87 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCHHHHH
T ss_conf             89999999999999876564200277654134523313451473378547765579999997535753035540255899


Q ss_pred             HHHHHHHCCCCCCEEEEECC-CCCCC-HHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999861899879999758-88888-899999999999841-4786799603323322321000111000130135345
Q gi|254780747|r   55 ERIERISRDDSATALIVSLS-SPGGS-AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS  131 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i~-SpGG~-~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs  131 (293)
                      .+|++|++|++|++|+++++ +-|++ .....+|..||.+|| ++||||||...| ..++|||||.||+|+.+|.+.|..
T Consensus        88 ~Ai~~A~~D~~I~~~~~DL~~~~g~dG~~~l~~~~~AL~~Fk~SgKpv~ay~~nY-S~~~YYLAsfAd~I~L~p~G~Vdl  166 (614)
T TIGR00705        88 NAIRQAADDRRIEGLVLDLKNFEGVDGSPALSEIGKALSEFKDSGKPVYAYGENY-SQGQYYLASFADEILLNPMGSVDL  166 (614)
T ss_pred             HHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHHHHHHHCCCCCCEEC
T ss_conf             9998301278708999733323576677327988999999985699089985253-402368876540240368872450


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHH
Q ss_conf             556530210245677742042255315521123466--678999988777776666677899998514--9998899887
Q gi|254780747|r  132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVL  207 (293)
Q Consensus       132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R--~~~~~~~~~~  207 (293)
                      -|+..+..||++++||+||.++.+|+|-||++.|||  ++||||.|+..|.++.++|++|+..|+++|  .++.+++-.-
T Consensus       167 ~Gl~~~~Lfy~~~l~K~~v~~~~~rvG~YKgavEpF~R~d~SPe~r~~~q~~l~~lWq~YL~~Va~NRsl~~~~~~~~~~  246 (614)
T TIGR00705       167 HGLATETLFYKGMLDKLGVSVHVFRVGTYKGAVEPFLREDMSPEARENQQRWLGELWQNYLSSVAENRSLAIPKEQVLPS  246 (614)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
T ss_conf             35244764088799761286216896210242142355566888899999999999988888887031135708760211


Q ss_pred             HCCCCC--------CHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             349823--------7889987798062389899999999741877
Q gi|254780747|r  208 SDGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ  244 (293)
Q Consensus       208 ~~g~~~--------~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~  244 (293)
                      +++..+        +++.|++.+||+.+....++-..+.++.+..
T Consensus       247 a~~~L~~l~~~~g~~~~~a~~~~lV~~~~~~~~~~~~l~~~~e~~  291 (614)
T TIGR00705       247 AQGLLEALKKLKGDLAKYALEEKLVTAVVSQAEVEKALKELFEED  291 (614)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf             212467877513547899987657899873517531044444887


No 14 
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97  E-value=1e-29  Score=207.07  Aligned_cols=158  Identities=37%  Similarity=0.482  Sum_probs=141.9

Q ss_pred             EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      +|.++|+|.+  .+.++..|+.|..|+++|+|+|+||||||++.++.+|+++|+++  ++||++++.+.|+|+|||++++
T Consensus         1 ii~l~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~~~--~~~v~t~~~g~aaS~g~~i~~a   78 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAASAGYYIATA   78 (161)
T ss_pred             CEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEECCCCEEEHHHHHHHC
T ss_conf             98966555789999999999999838999978999989998889999999999961--9999996687377604566515


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             11000130135345556530210245677742042255315521123466678999988777776666677899998514
Q gi|254780747|r  118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR  197 (293)
Q Consensus       118 ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R  197 (293)
                      ||++|+.|++.+|++|+.....                            ...++.+++..+..++.+++.|.+.++++|
T Consensus        79 ~~~~~~~p~s~v~~h~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  130 (161)
T cd00394          79 ANKIVMAPGTRVGSHGPIGGYG----------------------------GNGNPTAQEADQRIILYFIARFISLVAENR  130 (161)
T ss_pred             CCCCCCCCCCEEEEECCCCCCC----------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8853308874045525621478----------------------------889999999999999999999999999753


Q ss_pred             CCCHHHHHH-HHCCCCCCHHHHHHCCCCCCC
Q ss_conf             999889988-734982378899877980623
Q gi|254780747|r  198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV  227 (293)
Q Consensus       198 ~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~i  227 (293)
                      +++.+++.+ +.++.+|+|+||+++||||+|
T Consensus       131 g~~~~~i~~~~~~~~~lta~eA~e~GliD~I  161 (161)
T cd00394         131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CCCHHHHHHHHCCCCEECHHHHHHCCCCCCC
T ss_conf             9999999998507958849999986996409


No 15 
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.87  E-value=2.3e-21  Score=154.39  Aligned_cols=153  Identities=22%  Similarity=0.368  Sum_probs=120.3

Q ss_pred             EEEEEEEECCH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99976662386-----9999999998618998799997588888889999999999984147867996033233223210
Q gi|254780747|r   40 RIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI  114 (293)
Q Consensus        40 ~i~i~G~I~~~-----~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i  114 (293)
                      .|.+-|.|.+.     .+++..|+.   .++.+-|.|+||||||++..+..|+++|+..  +.||++++.+.|+|+||+|
T Consensus         2 ~i~~~g~i~~~~~~~~~~~~~~L~~---~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~--~~~V~t~~~G~aaS~g~~I   76 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDA---LGDDSDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGLAASAASVI   76 (160)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHH
T ss_conf             6999955637768399999999982---7999997999989985899999999999867--9598999927077889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00111000130135345556530210245677742042255315521123466678999988777776666677899998
Q gi|254780747|r  115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS  194 (293)
Q Consensus       115 As~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va  194 (293)
                      +++||+++|.|++.+.      .+.            +.....|+            ..+.+.....++.+++.+.+..+
T Consensus        77 ~~ag~kr~~~~~s~im------iH~------------~s~~~~G~------------~~d~~~~~~~~~~~~~~~~~~~~  126 (160)
T cd07016          77 AMAGDEVEMPPNAMLM------IHN------------PSTGAAGN------------ADDLRKAADLLDKIDESIANAYA  126 (160)
T ss_pred             HHCCCEEEECHHHHHH------HCC------------CCCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8549859984578754------168------------66567878------------89999999999999999999999


Q ss_pred             HCCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCC
Q ss_conf             5149998899887349823-78899877980623
Q gi|254780747|r  195 ESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV  227 (293)
Q Consensus       195 ~~R~~~~~~~~~~~~g~~~-~~~~A~~~GLvD~i  227 (293)
                      ++++++.++++++.++..| +|+||+++||||+|
T Consensus       127 ~~tg~~~~~i~~~~~~d~w~sa~EA~e~GliD~I  160 (160)
T cd07016         127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCCC
T ss_conf             8819999999998659908439999984898729


No 16 
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.87  E-value=1.9e-21  Score=154.99  Aligned_cols=160  Identities=25%  Similarity=0.315  Sum_probs=124.7

Q ss_pred             EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             8999976662386--99999999986189987999975888888899999999999841478679960332332232100
Q gi|254780747|r   38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS  115 (293)
Q Consensus        38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iA  115 (293)
                      |.+|+++|+|...  ..+.+.|++|.+ ++.++|+|+||||||.+.++.+|+++|.+.  ++||++|+.+.++|+||||+
T Consensus         1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~ivl~idTpGG~v~~~~~I~~~I~~~--~~pvv~~V~~~AaSAG~~Ia   77 (178)
T cd07021           1 VYVIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVNDRAASAGALIA   77 (178)
T ss_pred             CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH
T ss_conf             989997356868899999999999996-899789999979998689999999999848--99999999992077999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01110001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ++||+|+|.|++.+|+.+.+....                         +   .       ....-+...+..+...+++
T Consensus        78 ~aad~i~m~p~t~iG~a~Pv~~~g-------------------------~---~-------~~~~K~~s~~~a~~r~~Ae  122 (178)
T cd07021          78 LAADEIYMAPGATIGAAEPIPGDG-------------------------N---G-------AADEKVQSYWRAKMRAAAE  122 (178)
T ss_pred             HHCCEEEECCCCCEECCCCCCCCC-------------------------C---C-------HHHHHHHHHHHHHHHHHHH
T ss_conf             846700488998530154255888-------------------------6---3-------1467899999999999999


Q ss_pred             CCCCCHHHHHHHHCCC--------------CCCHHHHHHCCCCCCCCC-HHHHHH
Q ss_conf             1499988998873498--------------237889987798062389-899999
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR--------------IWTGAEAKKVGLIDVVGG-QEEVWQ  235 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~--------------~~~~~~A~~~GLvD~ig~-~~~a~~  235 (293)
                      .||-+.+-.+...+..              .+|+++|+++|++|.+.. .+++++
T Consensus       123 ~~GRn~~~aeamV~~~~~v~~~~~~~g~~Ltlta~EAl~~g~~d~ia~~~~~Ll~  177 (178)
T cd07021         123 KKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV  177 (178)
T ss_pred             HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHH
T ss_conf             8399899999997514444211233455443589999973982788689999951


No 17 
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.85  E-value=1.9e-20  Score=148.67  Aligned_cols=169  Identities=26%  Similarity=0.304  Sum_probs=129.9

Q ss_pred             EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCC
Q ss_conf             8999976662386--999999999861899879999758888888999999999998414786799603---32332232
Q gi|254780747|r   38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGY  112 (293)
Q Consensus        38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~---~~~~S~~Y  112 (293)
                      |.+|+++|+|...  +.+.+.|++|.+ ++.++|+|++|||||.+....+|.+.|.  +++.|+++|+.   ..++|+|+
T Consensus         1 V~vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~avvl~idTpGG~v~~~~~I~~~i~--~s~vpvi~~V~p~G~~A~SAGa   77 (187)
T cd07020           1 VYVLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPGGLLDSTREIVQAIL--ASPVPVVVYVYPSGARAASAGT   77 (187)
T ss_pred             CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHH
T ss_conf             989996146768899999999999986-8998999998589607899999999998--1899989998789760771899


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r  113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      ||+.+||.++|.|++.+|+...+....                           -....+    .++..+-+.+..|...
T Consensus        78 ~I~~a~~~~~MaPgt~iGaA~PV~~~~---------------------------~~~~~~----~~~~K~~n~~~a~~rs  126 (187)
T cd07020          78 YILLAAHIAAMAPGTNIGAAHPVAIGG---------------------------GGGSDP----VMEKKILNDAVAYIRS  126 (187)
T ss_pred             HHHHHCCHHHCCCCCCEECCCCEECCC---------------------------CCCCCH----HHHHHHHHHHHHHHHH
T ss_conf             999836075478987500144120689---------------------------887605----7899999999999999


Q ss_pred             HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCC-CHHHHHHHHHHH
Q ss_conf             98514999889988-7349823788998779806238-989999999974
Q gi|254780747|r  193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYAL  240 (293)
Q Consensus       193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig-~~~~a~~~l~~~  240 (293)
                      +++.||.+.+-.+. +.++..+|++||+++|+||.+. +.+|.++.+-.+
T Consensus       127 ~Ae~rGRn~~~Ae~~V~e~~~lta~eAl~~gviD~ia~~~~eLL~~l~G~  176 (187)
T cd07020         127 LAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLDGR  176 (187)
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCHHHHHHHCCCC
T ss_conf             99983999899999876147668999997698178849999999876891


No 18 
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.78  E-value=2.3e-18  Score=135.50  Aligned_cols=164  Identities=27%  Similarity=0.347  Sum_probs=125.1

Q ss_pred             EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCC
Q ss_conf             8999976662386--99999999986189987999975888888899999999999841478679960---332332232
Q gi|254780747|r   38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGY  112 (293)
Q Consensus        38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~---~~~~~S~~Y  112 (293)
                      |.+|+++|+|...  ..+.+.|++|.++ +..+|+|++|||||.+....+|.++|.  +++.|+++|+   +..++|+|.
T Consensus         1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~~-~a~~vii~ldTPGG~~~a~~~I~~~i~--~s~vPv~~yV~P~g~~A~SAGa   77 (172)
T cd07015           1 VYVAQIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQ--QSKIPVIIYVYPPGASAASAGT   77 (172)
T ss_pred             CEEEEECCEECHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEEECCCCCHHHHHH
T ss_conf             9899972678688999999999999977-998999998689628999999999998--2999989999479962676999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r  113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      ||+.+||.++|.|++.+|+--.+...                   |+         ..+++.   ....+...+..+...
T Consensus        78 ~I~~aa~~~~MaPgt~iGaA~PV~~~-------------------g~---------~~~~~~---~~~K~~n~~~a~~rs  126 (172)
T cd07015          78 YIALGSHLIAMAPGTSIGACRPILGY-------------------SQ---------NGSIIE---APPKITNYFIAYIKS  126 (172)
T ss_pred             HHHHHCCHHEECCCCCCCCCCEEECC-------------------CC---------CCCCCC---CCHHHHHHHHHHHHH
T ss_conf             99985543206799874357632068-------------------98---------888665---547789999999999


Q ss_pred             HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCC-HHHHHH
Q ss_conf             98514999889988-73498237889987798062389-899999
Q gi|254780747|r  193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG-QEEVWQ  235 (293)
Q Consensus       193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~  235 (293)
                      +++.||-+.+-.+. +-+...+|++||+++|.||.+.. .+|.++
T Consensus       127 ~Ae~rGRn~~~ae~~V~e~~slta~eAl~~gviD~iA~~~~eLL~  171 (172)
T cd07015         127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK  171 (172)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCHHHHHH
T ss_conf             999859988999999874247599999976981788599999950


No 19 
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74  E-value=8e-16  Score=119.54  Aligned_cols=173  Identities=25%  Similarity=0.294  Sum_probs=132.4

Q ss_pred             CCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC---
Q ss_conf             56778728999976662386--9999999998618998799997588888889999999999984147867996033---
Q gi|254780747|r   31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE---  105 (293)
Q Consensus        31 ~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~---  105 (293)
                      ...+++.|.++.++|.|...  +.+.+.|+.|.+ ++...++|.+|+|||-+....+|.++|.  .++-||+.|+-.   
T Consensus        21 ~~~~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~--~s~vPV~~yv~p~ga   97 (436)
T COG1030          21 VATAEKKVYVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL--NSPVPVIGYVVPDGA   97 (436)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCC
T ss_conf             1256771899992574277799999999999985-7984799996089726799999999987--599977999948985


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      +|+|+|.||+.+||.++|.|++.+|+.-.+...                              +.+.++..     .-+.
T Consensus        98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~------------------------------g~~~~~~~-----~~n~  142 (436)
T COG1030          98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGG------------------------------GTSAKEAN-----TTNA  142 (436)
T ss_pred             CHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCC------------------------------CCCCCCHH-----HHHH
T ss_conf             110403279885676551798743546502479------------------------------98855014-----3789


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf             67789999851499988998873-498237889987798062389-899999999741
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG  241 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l~~~~  241 (293)
                      +..|....++.||-+.+-.++.. +..-+++++|.+.|++|-+.. ..|+++.+....
T Consensus       143 ~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~  200 (436)
T COG1030         143 AVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS  200 (436)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             9999999999839986999998642157786679855940035587899998704775


No 20 
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=99.68  E-value=1.5e-15  Score=117.87  Aligned_cols=158  Identities=23%  Similarity=0.278  Sum_probs=119.1

Q ss_pred             EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      +|-+.|.|.+  ..+++..|-.....+.-+-|.|+||||||++..+..|+++|+..+  -||++++.+.|+|+|.+|+++
T Consensus        18 ii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~--~~V~Ti~~G~aaS~aslI~~a   95 (182)
T pfam00574        18 IIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PDVSTICLGLAASMGSFLLAA   95 (182)
T ss_pred             EEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCHHHC
T ss_conf             899898436899999999999985629699989999899967899999999998479--984899920361455320102


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ||  +-++.|++.+-      .|.            +.....|            +..+.+.....++.+.+.+.+..++
T Consensus        96 G~~g~R~~~p~s~~M------iHq------------~~~~~~G------------~~~di~~~~~~l~~~~~~i~~~ya~  145 (182)
T pfam00574        96 GTKGKRFALPNARIM------IHQ------------PLGGAQG------------QASDIEIQAEEILKIRERLNEIYAE  145 (182)
T ss_pred             CCCCCEEECCCCCEE------EEC------------CCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             677744456570102------563------------6546664------------8999999999999999999999998


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCC
Q ss_conf             1499988998873498-237889987798062389
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGG  229 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~  229 (293)
                      +.|.+.+.+++..+.. .++++||+++||||+|..
T Consensus       146 ~tg~~~~~i~~~~~~d~~lta~EA~~~GliD~Ii~  180 (182)
T pfam00574       146 HTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIE  180 (182)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf             86949999999850783246999998399868505


No 21 
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.68  E-value=1.7e-15  Score=117.54  Aligned_cols=156  Identities=18%  Similarity=0.256  Sum_probs=117.2

Q ss_pred             EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      +|-+.|+|.+  ...++..|.-....+.-|.|.|+||||||++.+...|+++|+..+  .||++++.+.|+|.|.+|+++
T Consensus         2 ii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~--~~v~tv~~G~aaS~as~i~~a   79 (162)
T cd07013           2 EIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIK--ADVVTIIDGLAASMGSVIAMA   79 (162)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHC
T ss_conf             899888017899999999999972629799989999799857999999999998479--998999630465165899973


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      +|  +-|+.|++.+-.      |....               |        +. -+..+-+.....++...+...+..++
T Consensus        80 G~~g~R~~~~~s~~Mi------Hq~~~---------------g--------~~-G~~~di~~~~~~l~~~~~~i~~i~a~  129 (162)
T cd07013          80 GAKGKRFILPNAMMMI------HQPWG---------------G--------TL-GDATDMRIYADLLLKVEGNLVSAYAH  129 (162)
T ss_pred             CCCCCCEECCCHHHHH------HCCCC---------------C--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7888817676689988------06345---------------6--------57-79999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCC
Q ss_conf             1499988998873498-2378899877980623
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV  227 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~i  227 (293)
                      +.+++.+++++..+.. .++|+||+++||||+|
T Consensus       130 ~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD~I  162 (162)
T cd07013         130 KTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCC
T ss_conf             889099999986148823669999985998809


No 22 
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.67  E-value=9.5e-16  Score=119.07  Aligned_cols=162  Identities=23%  Similarity=0.263  Sum_probs=124.2

Q ss_pred             EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r   41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS  118 (293)
Q Consensus        41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a  118 (293)
                      |-+-|+|.+.  ..++.+|-.+...+..|.|.|+||||||++.+...|++.++..  +.||.+++.+.++|.|-.|++++
T Consensus        30 I~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~AaSmgs~l~~aG  107 (200)
T COG0740          30 IFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQAASMGSVLLMAG  107 (200)
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHCC
T ss_conf             9996422507788899999999833998986999968996610569999999855--99869997467876899999658


Q ss_pred             CCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             100--013013534555653021024567774204225531552112346667899998877777666667789999851
Q gi|254780747|r  119 NII--VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES  196 (293)
Q Consensus       119 d~I--~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~  196 (293)
                      ++-  ++-|++.+-      -|...                |-       +. -...+-+.--..++.+.....+..+++
T Consensus       108 ~~g~r~~lPnsrim------IHqP~----------------gg-------~~-G~a~Di~i~A~ei~~~~~~l~~i~a~~  157 (200)
T COG0740         108 DKGKRFALPNARIM------IHQPS----------------GG-------AQ-GQASDIEIHAREILKIKERLNRIYAEH  157 (200)
T ss_pred             CCCCCEECCCCEEE------EECCC----------------CC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87871367864389------86687----------------56-------76-678799999999999999999999988


Q ss_pred             CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf             4999889988734-9823788998779806238989999
Q gi|254780747|r  197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVW  234 (293)
Q Consensus       197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~~a~  234 (293)
                      -|.+.+++....+ ....+|+||+++||||++....++.
T Consensus       158 TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~  196 (200)
T COG0740         158 TGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA  196 (200)
T ss_pred             HCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCCCCCC
T ss_conf             099889999861234457999999748855321333212


No 23 
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60  E-value=3.5e-14  Score=109.18  Aligned_cols=162  Identities=23%  Similarity=0.304  Sum_probs=118.6

Q ss_pred             EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      .|-+.|+|.+.  ..++.+|--....+.-|-|-|+||||||++.+.-.|+++++..+  -||.+.+.+.|+|.|-+|.++
T Consensus        34 iifl~~~i~~~~a~~iia~ll~L~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~aslil~a  111 (204)
T PRK12553         34 IIFLGGQVDDASANDVMAQLLVLESIDPDRPITMYINSPGGSVTSGDAIYDTIQFVR--PDVQTVGTGQAASAGAVLLAA  111 (204)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEHHHHHHHHHHC
T ss_conf             899888338899999999999974739599989999799855768999999999569--984999974755568899961


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ++  +.++-|++.+-.     ..|..               .|.       ++ -+..+.+.-...+..+.+.+.+..++
T Consensus       112 G~kgkR~a~pns~iMi-----HqP~~---------------~gg-------~~-G~a~di~i~a~ei~~~~~~i~~iya~  163 (204)
T PRK12553        112 GTPGKRFALPNTRFLI-----HQPSL---------------GGG-------IQ-GQASDLEIQAREILRMRERLERTLAE  163 (204)
T ss_pred             CCCCCEEECCCCEEEE-----CCCCC---------------CCC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7746646368874677-----37653---------------478-------65-55768999999999999999999998


Q ss_pred             CCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHH
Q ss_conf             14999889988734-9823788998779806238989
Q gi|254780747|r  196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       196 ~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~  231 (293)
                      +-|.+.+++.+..+ ...++++||+++||||+|-+-.
T Consensus       164 ~Tg~~~e~i~~~~~rd~~msa~EA~eyGliD~Ii~~~  200 (204)
T PRK12553        164 ATGQPREKIRKDTDRDKWLTAEEAKDYGLVDQILTSR  200 (204)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCH
T ss_conf             8697999999872478515799999819997871632


No 24 
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60  E-value=5e-14  Score=108.22  Aligned_cols=159  Identities=24%  Similarity=0.300  Sum_probs=118.1

Q ss_pred             EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      .|-+.|+|.+  ..+++..|--....+.-|-|.|.||||||++.+.-.|+++++..+  -||.+++.+.|+|.|-+|+++
T Consensus        29 iifl~~~i~~~~a~~iia~llyL~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Tv~~G~aaS~aslIl~a  106 (197)
T PRK00277         29 IIFLGGEVEDHMANLIVAQLLFLEAEDPTKDIYLYINSPGGSVTAGMAIYDTMQFIK--PDVSTICMGQAASMGAFLLAA  106 (197)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCCHHHHC
T ss_conf             899898107899999999999864619699989999799866878999999997179--973999874600210257760


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ++  +.|+.|++.+-.-     .|                ..|        +. -+..+.+.-...++.+.+.+.+..++
T Consensus       107 G~kgkR~~~pns~iMiH-----qp----------------~~g--------~~-G~a~di~~~a~el~~~~~~i~~iya~  156 (197)
T PRK00277        107 GTKGKRFALPNSRIMIH-----QP----------------LGG--------FQ-GQATDIEIHAREILKIKKRLNEILAE  156 (197)
T ss_pred             CCCCCEEECCCHHHHHC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78663422604466631-----46----------------546--------67-77999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH
Q ss_conf             1499988998873498-2378899877980623898
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~  230 (293)
                      +-|.+.+++.+..+-. .++++||+++||||+|-+-
T Consensus       157 ~Tg~~~~~i~~~~~rd~~msa~EA~~yGliD~Il~~  192 (197)
T PRK00277        157 HTGQSLEKIEKDTDRDNFMSAEEAKEYGLIDKVITK  192 (197)
T ss_pred             HHCCCHHHHHHHCCCCEECCHHHHHHHCCCCEEECC
T ss_conf             879399999986247802469999980999788141


No 25 
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.59  E-value=6.9e-14  Score=107.35  Aligned_cols=160  Identities=24%  Similarity=0.264  Sum_probs=118.1

Q ss_pred             EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      .|-+.|+|.+.  ..++.+|--....+.-|-|.|+||||||++.+.-.|+++++..+  -||.+.+.+.|+|.|-+|+++
T Consensus        32 iifl~~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~AaS~aslilaa  109 (201)
T CHL00028         32 LLFLGQELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGIAIYDTMQFVK--PDVHTICLGLAASMGSFILAG  109 (201)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEHHCCHHHHHHHC
T ss_conf             899898017899999999999972649799989999899854868999999998559--995899760010536788614


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ++  +-++.|++.+-.-     .|                ..|-       + .-+..+.+.-...+..+.+.+.+..++
T Consensus       110 G~kgkR~~~pns~iMIH-----qp----------------~~g~-------~-~G~a~di~~~a~el~~~~~~i~~iya~  160 (201)
T CHL00028        110 GEITKRLAFPHARVMIH-----QP----------------ASSF-------Y-EGQASEFVLEAEELLKLRETLTRVYVQ  160 (201)
T ss_pred             CCCCCEEECCCHHHHEE-----CC----------------CCCC-------C-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88763562658556124-----45----------------4676-------7-897899999999999999999999998


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH
Q ss_conf             1499988998873498-2378899877980623898
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~  230 (293)
                      +-|.+.+++++..+-. .++++||+++||||+|.+.
T Consensus       161 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~  196 (201)
T CHL00028        161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVE  196 (201)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCC
T ss_conf             879599999987157842679999981998888257


No 26 
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.56  E-value=9.4e-14  Score=106.50  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=116.8

Q ss_pred             EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                      .|-+.|+|.+.  .+++..|--...++.-|-|.|+||||||++..+-.|+++++..+  -||.+.+.+.|+|.|-+|.++
T Consensus        27 iifl~~~i~~~~a~~ii~~ll~L~~e~~~k~I~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~as~il~a  104 (196)
T PRK12551         27 IIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA  104 (196)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEHHHHHHHHHC
T ss_conf             899898127899999999999860729799979999799866655699999996269--997999962402256789974


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      ++  +.++.|++.+-.-     .|                ..|        +. -+..+.+.-...+..+.+.+.+..++
T Consensus       105 G~kgkR~~~pns~iMIH-----qp----------------~~~--------~~-G~a~di~~~a~el~~~~~~i~~i~a~  154 (196)
T PRK12551        105 GAKGKRSSLQHSRIMIH-----QP----------------LGG--------AR-GQASDIRIQADEILFLKERLNTELSE  154 (196)
T ss_pred             CCCCCCCCCCCCEEEEC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88886012656024770-----56----------------767--------56-75879999999999999999999999


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCHH
Q ss_conf             1499988998873498-23788998779806238989
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~~  231 (293)
                      +-|.+.+++.+..+-. .++++||+++||||+|-+..
T Consensus       155 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~r  191 (196)
T PRK12551        155 RTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
T ss_conf             8795999999873578606799999829987860789


No 27 
>pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.
Probab=99.41  E-value=1.4e-11  Score=92.87  Aligned_cols=188  Identities=24%  Similarity=0.308  Sum_probs=119.3

Q ss_pred             CCCCEEEEEEEEEEE-------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf             778728999976662-------------3869999999998618998799997588888889999999999984147867
Q gi|254780747|r   33 DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV   99 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I-------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpv   99 (293)
                      -++.-|..|+=.-.+             -++++++++|+..-+|-   -|-|-+.+|||.+.++++|+.|+++.  +.|+
T Consensus        48 r~srVItlIHRQE~is~lGiP~~ryI~ieDSE~VLRAIr~Tp~d~---PIDlIlHTPGGlvLAa~QIA~AL~~H--~akv  122 (286)
T pfam01972        48 RGSRVITMIHRQESIGFLGIPIYKFITIEDSEEILRAIRLTPKDM---PIDLIIHTPGGLALAATQIAKALKEH--KAKT  122 (286)
T ss_pred             HCCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCC---CEEEEEECCCHHHHHHHHHHHHHHHC--CCCE
T ss_conf             388699985201246543852743226232899999997599999---85799857961689999999999958--9973


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCHH--HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             996033233223210001110001301353455565-302102--45677742042255315521123466678999988
Q gi|254780747|r  100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYV--KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ  176 (293)
Q Consensus       100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~-~~~~~~--~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~  176 (293)
                      .+++..+|.|||.+||.+||+|+|.+++..|.+--. ++.|-.  -...++-+++-          .-+.+--|.+-.+.
T Consensus       123 tV~VPHYAMSGGTlIALAADEIvMd~nAVLGPvDPQlG~~PAaSIl~v~e~K~~~~----------idD~TLIlaDva~K  192 (286)
T pfam01972       123 TVIVPHYAMSGGTLIALAADEIIMDENAVLGPVDPQIGQYPAASILKAVEKKGPKK----------IDDQTLILADISKK  192 (286)
T ss_pred             EEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC----------CCCHHHHHHHHHHH
T ss_conf             99950310567420321066055677655588782026876799999997479131----------46400127888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----CCC-----CCCHHHHHHCCCCCCCCCHHHHHH--HHHHHC
Q ss_conf             77777666667789999851499988998873----498-----237889987798062389899999--999741
Q gi|254780747|r  177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS----DGR-----IWTGAEAKKVGLIDVVGGQEEVWQ--SLYALG  241 (293)
Q Consensus       177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~----~g~-----~~~~~~A~~~GLvD~ig~~~~a~~--~l~~~~  241 (293)
                      .++.+-+..+     ...+. +++.++.++++    .|+     +.|.++|+++||-=..+--+++-+  +++.+.
T Consensus       193 Ai~Qv~~~v~-----~LL~~-k~~eeka~~ia~~L~~G~wTHDyPit~e~ak~lGl~V~t~~P~evy~LM~LypQp  262 (286)
T pfam01972       193 AIKQMEEFVY-----NLLKD-KYGEEKAKEIAKILTEGRWTHDYPLTVEELKELGLEVNTNVPEEVYELMELYPQP  262 (286)
T ss_pred             HHHHHHHHHH-----HHHHC-CCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             9999999999-----99874-3888999999999806844178888999999859966689989999999847787


No 28 
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.38  E-value=7.2e-12  Score=94.64  Aligned_cols=158  Identities=20%  Similarity=0.152  Sum_probs=109.3

Q ss_pred             EEEEEEEECCHH------------HHHHHHHHHHCCCCCCEEEEECCCCC---------CCHHHHHHHHHHHHHHCCCCC
Q ss_conf             999766623869------------99999999861899879999758888---------888999999999998414786
Q gi|254780747|r   40 RIAIRGQIEDSQ------------ELIERIERISRDDSATALIVSLSSPG---------GSAYAGEAIFRAIQKVKNRKP   98 (293)
Q Consensus        40 ~i~i~G~I~~~~------------~l~~~l~~a~~d~~ik~ivL~i~SpG---------G~~~~~~~i~~ai~~~k~~kp   98 (293)
                      .|-+.++|.+.+            .++.+|--...++.-|-|.|+|||||         |+++++-.|++.++..+.  |
T Consensus        32 Iiflg~pi~~~d~~~~~~~~~vanliiAqLL~L~~ed~~k~I~lYINSpGgs~~~G~~~G~vt~~lAIyDtMq~Ik~--~  109 (222)
T PRK12552         32 IVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKP--P  109 (222)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--C
T ss_conf             89867865642001101207899999999998514389999799983899765567643432306789899851599--8


Q ss_pred             EEEEECCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             7996033233223210001110--00130135345556530210245677742042255315521123466678999988
Q gi|254780747|r   99 VITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ  176 (293)
Q Consensus        99 vva~~~~~~~S~~Y~iAs~ad~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~  176 (293)
                      |.+.+-+.|+|.|-+|.+++++  -++-|++.+-.-     .|                 .|..       + -+..+.+
T Consensus       110 V~Tic~G~AaSmgalLLaaG~kGkR~alPnsriMiH-----QP-----------------~gg~-------~-GqAsDI~  159 (222)
T PRK12552        110 VHTICIGQAMGTAAMILSAGTKGQRASLPHASIVLH-----QP-----------------RSGA-------R-GQATDIQ  159 (222)
T ss_pred             EEEEEHHHHHHHHHHHHHCCCCCCCEECCCCHHHHC-----CC-----------------CCCC-------C-CCHHHHH
T ss_conf             578852787709999986388877212687113223-----87-----------------7677-------7-7799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCC
Q ss_conf             777776666677899998514999889988734-98237889987798062389
Q gi|254780747|r  177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG  229 (293)
Q Consensus       177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~  229 (293)
                      .-...+....+...+..+++-|.+.+++.+..+ ...++++||+++||||+|-+
T Consensus       160 i~a~Eil~~r~~l~~ila~~TGq~~e~I~~d~~RD~~msA~EA~eYGLID~Il~  213 (222)
T PRK12552        160 IRAKEVLHNKRTMLEILSRNTGQTVEKLSKDSDRMFYLTPQEAKEYGLIDRVLE  213 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEC
T ss_conf             999999999999999999987969999998718775678999998098768722


No 29 
>KOG0840 consensus
Probab=99.26  E-value=5.8e-11  Score=88.94  Aligned_cols=158  Identities=24%  Similarity=0.294  Sum_probs=107.1

Q ss_pred             EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r   41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS  118 (293)
Q Consensus        41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a  118 (293)
                      |-+-++|.+.  +.++.++--...++.-|-|.|.||||||++++.-.|++.++..|.  ||.+.+-++|+|-|-+|.+++
T Consensus        95 i~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~--~V~Tic~G~Aas~aalLLaaG  172 (275)
T KOG0840          95 VFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKP--DVSTICVGLAASMAALLLAAG  172 (275)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--CCEEEEHHHHHHHHHHHHHCC
T ss_conf             641885768999999999998632388887689984899733102568988876379--711220556776888998668


Q ss_pred             CC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             10--0013013534555653021024567774204225531552112346667899998877777666667789999851
Q gi|254780747|r  119 NI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES  196 (293)
Q Consensus       119 d~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~  196 (293)
                      .+  -|+-|++.+--     ..|                 .|.+-   -.-+++.-+.+|     +....+...+..+++
T Consensus       173 ~KG~R~alPnsriMI-----hQP-----------------~gga~---Gqa~Di~i~akE-----~~~~k~~l~~i~a~~  222 (275)
T KOG0840         173 AKGKRYALPNSRIMI-----HQP-----------------SGGAG---GQATDIVIQAKE-----LMRIKEYLNEIYAKH  222 (275)
T ss_pred             CCCCEEECCCCEEEE-----ECC-----------------CCCCC---CCCHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_conf             876400067750578-----656-----------------77767---661379998999-----999999999999976


Q ss_pred             CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCH
Q ss_conf             4999889988734-982378899877980623898
Q gi|254780747|r  197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      -|.+.|.+.+-.+ .+.+++++|+++||||++...
T Consensus       223 Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840         223 TGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             CCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHCC
T ss_conf             39969999754032302799999881633455328


No 30 
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.19  E-value=4.5e-10  Score=83.37  Aligned_cols=163  Identities=20%  Similarity=0.313  Sum_probs=110.6

Q ss_pred             CCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH------------HHHHHHHH
Q ss_conf             77872899997666238------6999999999861899879999758----88888899------------99999999
Q gi|254780747|r   33 DNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA------------GEAIFRAI   90 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~------------~~~i~~ai   90 (293)
                      ..++.|+.|.++-+-.+      .+++.+.++.+.+|+++++|+|.=+    |.|++...            .+...+.+
T Consensus        13 ~~d~gVa~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   92 (225)
T PRK05869         13 SQDAGLATLLLSRPPTNALTRQVYREIVAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAV   92 (225)
T ss_pred             CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             78699899996787667899999999999999996489945999988997477267778772268334557899999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      ..++ .+||+++.+++.|..||..++++||.+++.+.+.+|.--+            ++|+-+.                
T Consensus        93 ~~i~~~pkPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~----------------  144 (225)
T PRK05869         93 DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI------------LAGLAPR----------------  144 (225)
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHCHHHHCCCCEEECCCC------------CCCCCCC----------------
T ss_conf             999838998999982800347899999704463079849988210------------6474877----------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      ..             ....+...|-..|     ..+-+..|+.|++++|+++||||++...+++.++..+.+
T Consensus       145 ~g-------------~~~~l~~~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (225)
T PRK05869        145 GD-------------GMARLTRAAGPSR-----AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA  198 (225)
T ss_pred             CC-------------HHHHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf             68-------------9999999977999-----999998599777999998498627658128999999999


No 31 
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.19  E-value=3.3e-10  Score=84.21  Aligned_cols=158  Identities=22%  Similarity=0.328  Sum_probs=107.4

Q ss_pred             CCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH--------------HHHHHHHH
Q ss_conf             7872899997666238------69999999998618998799997588----888889--------------99999999
Q gi|254780747|r   34 NSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAY--------------AGEAIFRA   89 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~--------------~~~~i~~a   89 (293)
                      -+++|++|.++-|=.+      .+++.+.++.+.+|+++++|||.=+.    .|++..              ....+.+.
T Consensus        10 ~~~~Va~itlnrP~~Nal~~~m~~el~~al~~~~~d~~vr~vvl~g~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (257)
T PRK06495         10 VSDHVAVVTLDNPPVNALSREMRDELIAVFDSLNDRPDVRVVVLTGAGKVFCAGADLKNRPDLESGPGALWAHNRRTREV   89 (257)
T ss_pred             EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999976775368999999999999999972999169999767981276887565146556703589999999999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +..+. ..||||+.+++.|..||..+|++||.+++.+.+.++.       |..     ++|+-      |          
T Consensus        90 ~~~i~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~-------pe~-----~~Gl~------g----------  141 (257)
T PRK06495         90 FYCIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGL-------PEI-----DVGLA------G----------  141 (257)
T ss_pred             HHHHHHCCCCEEEEECCEEECCCHHHHHHHHHHEECCCCEEEC-------CCC-----CEEEE------C----------
T ss_conf             9999958998999971377417225665432410047888986-------323-----74120------5----------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             7899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                       .+    ..+.           ..      +... ..+-+..|+.|+|++|+++||||++...++..+++.+.+
T Consensus       142 -g~----~~l~-----------r~------iG~~~a~~l~ltg~~~~aeeA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK06495        142 -GG----KHAM-----------RL------FPHSLTRRMMLTGYRVPASELYRLGIIEACLPPDELMPEAMALA  193 (257)
T ss_pred             -CH----HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             -36----7899-----------98------47999999986189678999998799748748779999999999


No 32 
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.19  E-value=7.1e-10  Score=82.12  Aligned_cols=163  Identities=23%  Similarity=0.275  Sum_probs=108.7

Q ss_pred             CCCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHH
Q ss_conf             77872899997666238-------69999999998618998799997588----88888999----------99999999
Q gi|254780747|r   33 DNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQ   91 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~   91 (293)
                      ..++.|+.|.++-|=.-       .+++.+.++.+.+|+++++|||.=+.    .|++....          ......++
T Consensus        12 ~~~dgVa~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   91 (260)
T PRK08138         12 RPADGVALLRLNRPDARNALNMEVRQQLAEHFTSLSEDPDIRVIVLTGGGTVFAAGADLKEFATAGAIELYLRHTERYWE   91 (260)
T ss_pred             ECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             82898899997478878998999999999999999768996699997899876468788888445846789999999999


Q ss_pred             HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf             841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r   92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV  170 (293)
Q Consensus        92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~  170 (293)
                      .+. ..||||+.+++.|..||.-+|++||-+++.+.+.++.-.+            ++|+-+.         .+.     
T Consensus        92 ~i~~~~kPvIaaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~-----  145 (260)
T PRK08138         92 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEI------------KVGLMPG---------AGG-----  145 (260)
T ss_pred             HHHHCCCCEEEEECCEEECCCHHHHHHCCCCCCCCCCCEECCCC------------EECCCCC---------CCH-----
T ss_conf             99838998999978940333079987410113354442446410------------1687888---------558-----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                          -.           .+...|-..|     ..+-+..|+.|+|++|+++|||+++...+++.+++.+.+
T Consensus       146 ----~~-----------~l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (260)
T PRK08138        146 ----TQ-----------RLVRAVGKFK-----AMRMALTGCMVPAPEALAIGLVSEVVEDEETLPRALELA  196 (260)
T ss_pred             ----HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ----99-----------9999975999-----999986088257999998699538748169999999999


No 33 
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.17  E-value=9e-10  Score=81.45  Aligned_cols=161  Identities=21%  Similarity=0.253  Sum_probs=108.7

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH
Q ss_conf             787289999766623-8------69999999998618998799997588----8888899---------------99999
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF   87 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~   87 (293)
                      -+++|+.|.++-|=. +      .+++.+.++.+.+|+++++|||+=+.    .|++...               .+...
T Consensus        11 ~~~~ia~itlNrP~~~Nal~~~~~~~l~~~~~~~~~d~~v~~iVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (263)
T PRK06688         11 LADGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVLLTGAGGAFSAGGDIKDFDAAPGGGPTYPEDELAPVN   90 (263)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             98999999974777579999999999999999996389936999977998676897679887256665055789899999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.++.+. .+||+|+.+++.|..||.-++++||-+++.+.+.+|.-.            -++|+-+.             
T Consensus        91 ~~~~~i~~~~kPvIaai~G~a~GgG~~la~~cD~ria~~~a~f~~pe------------~~~Gl~p~-------------  145 (263)
T PRK06688         91 RFLRAIAALPKPVVAAVNGAAVGVGVSLALACDLVYASDSAKFSLPF------------AKLGLCPD-------------  145 (263)
T ss_pred             HHHHHHHHCCCCEEEEECCEECCCCHHHHHHCCCHHCCCCCEECCCC------------CCEECCCC-------------
T ss_conf             99999995899889997576614527888623401004566660651------------24636888-------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                         ..-.  ..           +.      |.+.... .+-+..|+.+++++|+++||||++...++..+++.+.+
T Consensus       146 ---~~~~--~~-----------l~------r~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a  199 (263)
T PRK06688        146 ---AGGS--AL-----------LP------RLIGRARAAELLLLGEPLTAAEALRIGLVNRVVPAAELDAEADAQA  199 (263)
T ss_pred             ---CCHH--HH-----------HH------HHHCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             ---3188--99-----------99------9838999999874089878999998799426658068999999999


No 34 
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.15  E-value=1.4e-09  Score=80.33  Aligned_cols=162  Identities=20%  Similarity=0.258  Sum_probs=105.0

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHH
Q ss_conf             787289999766623-8------69999999998618998799997588----88888999----------999999998
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQK   92 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~   92 (293)
                      .++.|+.|.++-|=. +      ..++.+.++.+.+|++++.|||.=..    .|+++...          +.......+
T Consensus        10 ~~~~ia~itlnRP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (257)
T PRK09674         10 RQQRVLLLTLNRPEARNALNTALLAQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLVATLNDPRPQLWQR   89 (257)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999965888889989999999999999986389906999978998770776527650245144554189999999


Q ss_pred             HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf             41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r   93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN  171 (293)
Q Consensus        93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s  171 (293)
                      +. ..||||+.+++.|..||..++++||-+++.+.+.++.-.            -|+|+-+.         .     .. 
T Consensus        90 i~~~~kPvIaav~G~a~GgG~~la~~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~-  142 (257)
T PRK09674         90 IQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPE------------ITLGIMPG---------A-----GG-  142 (257)
T ss_pred             HHHCCCCEEEEECCEEEEEEHHHHHHCCCCHHHHHHHHCCCC------------CEEEECCC---------C-----CH-
T ss_conf             983899899998893123145765530210233321105720------------32762788---------4-----49-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             9998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                         -..           +...+-..     ...+-+..|+.+++++|++.|||+++...++..++..+.+
T Consensus       143 ---~~~-----------l~~~iG~~-----~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK09674        143 ---TQR-----------LIRSVGKS-----LASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA  193 (257)
T ss_pred             ---HHH-----------HHHHHHHH-----HHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf             ---999-----------99997599-----9999998589987999997897335658168999999999


No 35 
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.13  E-value=1.3e-09  Score=80.54  Aligned_cols=164  Identities=21%  Similarity=0.330  Sum_probs=111.5

Q ss_pred             CCCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH------------HHH
Q ss_conf             567787289999766623-8------69999999998618998799997588-----88888999------------999
Q gi|254780747|r   31 VEDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG------------EAI   86 (293)
Q Consensus        31 ~~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~------------~~i   86 (293)
                      .+..+|+|+.|.++-+=. +      .+++.+.++.+.+|++|++|||.=..     .|++....            ..+
T Consensus         8 ~~~~~~~Va~itlnrPe~~Nal~~~m~~~l~~al~~~~~d~~vr~vvl~g~G~~~F~aG~Dl~e~~~~~~~~~~~~~~~~   87 (261)
T PRK07657          8 VDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI   87 (261)
T ss_pred             EEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf             97853998999982898779989999999999999997589964999966998764289984766038877899999999


Q ss_pred             HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r   87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS  165 (293)
Q Consensus        87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~  165 (293)
                      .+.+..+. .+||+++.+++.|..+|..++++||.+++.+.+.++.-.            -++|+-+.         .+.
T Consensus        88 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~  146 (261)
T PRK07657         88 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE------------TTLAIIPG---------AGG  146 (261)
T ss_pred             HHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCCCCCCCEEEEEE------------EEECCCCC---------CCH
T ss_conf             999999982999899997796640318998844603012554044200------------00467887---------468


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             66678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                               -..+           ...      +.... .+-+..|+.+++++|+++||||++...++...++.+++
T Consensus       147 ---------~~~l-----------~r~------iG~~~a~~llltg~~~~aeeA~~~Glv~~v~~~~~l~~~a~~la  197 (261)
T PRK07657        147 ---------TQRL-----------PRL------IGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA  197 (261)
T ss_pred             ---------HHHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHHHHHHHHH
T ss_conf             ---------9999-----------998------66999999998099988999997798403758368999999999


No 36 
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.13  E-value=1.5e-09  Score=80.04  Aligned_cols=160  Identities=21%  Similarity=0.314  Sum_probs=106.4

Q ss_pred             CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH
Q ss_conf             7872899997666238-------69999999998618998799997588----8888899---------------99999
Q gi|254780747|r   34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF   87 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~   87 (293)
                      .+++|+.|.++-|=.-       .+++.+.++++.+|+++++|||.=..    .|++...               .+.+.
T Consensus         9 ~~g~va~ItlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (259)
T PRK07511          9 RSGSTLVLTLSNPGARNALHPDMYAAGIEALATAERDPSIRAVVLTGADGFFCAGGNLNRLLENRAKPPSVQAASIDLLH   88 (259)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             98999999962778789979999999999999997689965999989999623643689886342489889999999999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.+..+. .+||+|+.+++.|..||.-++++||-+++.+.+.++.       |.     -++|+-+.         .   
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p~-----~~~Gl~p~---------~---  144 (259)
T PRK07511         89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAADDAKFVM-------AY-----VKVGLTPD---------G---  144 (259)
T ss_pred             HHHHHHHHCCCCEEEEECCCEEHHHHHHHHHCCCCCCCCCCEEEC-------CC-----CCEEECCC---------C---
T ss_conf             999999839998999965703113389998327265454556745-------76-----66301688---------7---


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             6678999988777776666677899998514999889-9887349823788998779806238989999999974
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL  240 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~  240 (293)
                          ...  ..+           ...|      .... .+-+..|+.|+|++|+++|||+++...++..+++.+.
T Consensus       145 ----g~~--~~l-----------~r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~  196 (259)
T PRK07511        145 ----GGS--WFL-----------ARAL------PRQLATEILLEGKPISAERLHALGVVNRLAKPGAALDEALAL  196 (259)
T ss_pred             ----CHH--HHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf             ----699--999-----------9996------899999999848999799998889965743811899999999


No 37 
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.13  E-value=1.6e-09  Score=79.95  Aligned_cols=163  Identities=18%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-------HHHHHHHHHHHC-C
Q ss_conf             87289999766623-8------69999999998618998799997588----8888899-------999999999841-4
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-------GEAIFRAIQKVK-N   95 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-------~~~i~~ai~~~k-~   95 (293)
                      +++|+.|.++-|=. +      .+++.+.++.+ .|+++++|||.=+.    .|++...       .+.+.+.+..+. .
T Consensus         7 ~g~Va~itlnrP~~~NAl~~~m~~~l~~al~~~-~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~i~~~   85 (243)
T PRK07854          7 DGQVLTIELQRPERRNALNSELVEELREAVRKA-GDAGARAIVLTGQGTVFCAGADLSGDVYADDFPDALIELLHAIDAA   85 (243)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             899999997587767997999999999999972-3899559999788981668998655211667789999999999858


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf             78679960332332232100011100013013534555653021024567774204225531552112346667899998
Q gi|254780747|r   96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV  175 (293)
Q Consensus        96 ~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~  175 (293)
                      +||||+.+++.|..||.-+|++||-+++.+.+.++.-            .-|+|+.+.            +    .  .-
T Consensus        86 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~p------------~~~~Gl~~~------------~----g--~~  135 (243)
T PRK07854         86 PVPVIAAINGPAIGAGLQLALACDLRVVAPEAYFQFP------------VAKYGLALD------------N----W--TI  135 (243)
T ss_pred             CCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEECC------------CCCEEECCC------------C----C--HH
T ss_conf             9988999758323351578860999996477657566------------554145779------------6----2--99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             877777666667789999851499988998873498237889987798062389899999999741877
Q gi|254780747|r  176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ  244 (293)
Q Consensus       176 ~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~  244 (293)
                      .           .+...|-..|     ..+-++.|+.+++++|++.|||+++...+++.+++.+++...
T Consensus       136 ~-----------~l~~~vG~~~-----A~~llltg~~i~A~eA~~~Glv~~v~~~~~a~~~A~~ia~~~  188 (243)
T PRK07854        136 R-----------RLSSLVGGGR-----ARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGLA  188 (243)
T ss_pred             H-----------HHHHHHHHHH-----HHHHHHHCCEECHHHHHHCCCCCEECCHHHHHHHHHHHHCCC
T ss_conf             9-----------9999864999-----999999399425999987799668518899999999998759


No 38 
>PRK07830 consensus
Probab=99.12  E-value=1.7e-09  Score=79.78  Aligned_cols=161  Identities=17%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-------------HHHHHHH
Q ss_conf             87289999766623-8------6999999999861899879999758----888888999-------------9999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-------------EAIFRAI   90 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-------------~~i~~ai   90 (293)
                      +++|+.|.++-|=. +      .+++.+.++++.+|+++++|||.=+    |.|++....             +...+.+
T Consensus        18 ~~~Va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   97 (267)
T PRK07830         18 TDGVLSVTINRPDSLNSLTVPVLTGLADALEGAATDPRVKVVRLGGAGRGFSSGAGISADDVWGGGEPPTAVVDEANRAV   97 (267)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             89999999827998899899999999999998854899559999689987717887055540266565899999999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      +.+. ..||+++.+++.|..||.-++++||-+++.+.+.++.-            .-++|+-+.                
T Consensus        98 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~lGi~p~----------------  149 (267)
T PRK07830         98 RAIVALPVPVVAVVQGPAAGVGVSLALACDLVLASESAFFMLA------------FTKIGLMPD----------------  149 (267)
T ss_pred             HHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECC------------CCCEEEECC----------------
T ss_conf             9999689989999778377025799974321333457477167------------677775178----------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      +.-  ...+           ...|-..|     ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus       150 ~g~--~~~l-----------~~~iG~~~-----A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A  203 (267)
T PRK07830        150 GGA--SALV-----------AAAIGRIR-----AMRMALLAERLPAAEALAWGLVSAVYPADDFDAEVDKVI  203 (267)
T ss_pred             CCH--HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             559--9999-----------99966999-----999986289887999998799758638589999999999


No 39 
>PRK06951 consensus
Probab=99.11  E-value=1.6e-09  Score=79.83  Aligned_cols=160  Identities=18%  Similarity=0.269  Sum_probs=108.9

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHHHHHHHHHC
Q ss_conf             87289999766623-8------69999999998618998799997588----8888899---------999999999841
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAIFRAIQKVK   94 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i~~ai~~~k   94 (293)
                      +++|+.|.++-|=. +      .+++.+.++.+..|+++++|||.=+.    .|++...         ...+.+.++.+.
T Consensus         8 ~~~Va~itLnrP~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~i~   87 (254)
T PRK06951          8 AAGVLTITFARPAKKNAITAAMYQTMADALAAAQDDAAVRAILIRGSDGIFSAGNDLEDFLKAPPKDEDAPVFQFLRQIS   87 (254)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             89999999748874689899999999999999866889179999879998768997598861876433328999999998


Q ss_pred             -CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf             -4786799603323322321000111000130135345556530210245677742042255315521123466678999
Q gi|254780747|r   95 -NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK  173 (293)
Q Consensus        95 -~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e  173 (293)
                       ..||+|+.+++.|..||.-++++||-+++.+++.++.-.+            ++|+-+.                ....
T Consensus        88 ~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~----------------~g~~  139 (254)
T PRK06951         88 SAPKPIVAAVCGPAVGIGTTMLLHCDLVYAADTAAFSLPFA------------QLGLCPE----------------AASS  139 (254)
T ss_pred             HCCCCEEEEECCEEECCCHHHHHHCCCHHHCCCCCCCCHHH------------CCCCCCC----------------CCHH
T ss_conf             38999899986875144157766043012203670136653------------7304888----------------5399


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       174 ~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                        ..+.           ..      +.... .+-+..|+.|+|++|+++|||+++...++..+.+.+++
T Consensus       140 --~~l~-----------~~------iG~~~a~ellltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a  189 (254)
T PRK06951        140 --LLLP-----------RL------AGYQRAAEKLLLGEPFDALEAHEIGLVNRVLPAAELDAFAAQQA  189 (254)
T ss_pred             --HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             --9999-----------98------79999998877487546999998799416618679999999999


No 40 
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.11  E-value=2.5e-09  Score=78.62  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             CCCEEEEEEEEEEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHH------------HHHHHHHH
Q ss_conf             78728999976662386------99999999986189987999975888-----888899------------99999999
Q gi|254780747|r   34 NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAYA------------GEAIFRAI   90 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~~------------~~~i~~ai   90 (293)
                      -+++|+.|.++-|=.+.      +++.+.++.+.+|++++.|||+=..+     |++...            .....+.+
T Consensus         9 ~~~~va~ItlnrP~~Nal~~~m~~~l~~~l~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (258)
T PRK09076          9 IDGHVAILTLNNPPANTWTADSLQALKQLVLELNANKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAF   88 (258)
T ss_pred             EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             98999999977766266999999999999999962999559999658998640670277660478445899999999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      ..+. .+||+|+.+++.|..||.-+|++||-+++.+++.++.--            -++|+-+.         .+.    
T Consensus        89 ~~l~~~~~pvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe------------~~~Gl~p~---------~g~----  143 (258)
T PRK09076         89 EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPE------------ASVGLLPC---------AGG----  143 (258)
T ss_pred             HHHHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCCCCCH------------HEECCCCC---------CCH----
T ss_conf             99995899999998990764349998606755431565422612------------10166888---------668----


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                           -..+.           ..+      ... ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus       144 -----~~~l~-----------r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  194 (258)
T PRK09076        144 -----TQNLP-----------WLV------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEARDAALALA  194 (258)
T ss_pred             -----HHHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHH
T ss_conf             -----99999-----------997------2999999986499682999987699023559007999999999


No 41 
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.10  E-value=3.3e-09  Score=77.94  Aligned_cols=161  Identities=24%  Similarity=0.319  Sum_probs=108.1

Q ss_pred             CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH---------HHH----HHHHH
Q ss_conf             872899997666238------6999999999861899879999758----888888999---------999----99999
Q gi|254780747|r   35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG---------EAI----FRAIQ   91 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~---------~~i----~~ai~   91 (293)
                      +++|+.|.++-|=.+      .+++.+.++.+.+|++++.|||+=+    |.|++....         ..+    .+.+.
T Consensus         9 ~~~ia~itlnrP~~Nal~~~~~~~l~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   88 (257)
T PRK07658          9 EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQQTFE   88 (257)
T ss_pred             ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999718987899999999999999999878895699997899872289977887435664668999999999999


Q ss_pred             HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf             841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r   92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV  170 (293)
Q Consensus        92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~  170 (293)
                      .+. .+||||+.+.+.|..||.-++++||-++|.+++.++.-            .-++|+-+.                +
T Consensus        89 ~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------e~~~Gl~p~----------------~  140 (257)
T PRK07658         89 RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLP------------ELNLGLIPG----------------F  140 (257)
T ss_pred             HHHHCCCCEEEEECCHHHHCCHHHHHCCCEEEECCCCCCCCH------------HCCEEECCC----------------C
T ss_conf             999589989999767253142577532653431100404664------------216751787----------------4


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      .-.  ..           +...+-.+|     ..+-+..|+.+++++|+++||||++...++..+...+.+
T Consensus       141 g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK07658        141 AGT--QR-----------LPRYVGKAK-----ALEMMLTSEPITGAEALKWGLVNGAFSEEELLDDAKKLA  193 (257)
T ss_pred             CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             579--99-----------999967999-----999997589898999997799567708689999999999


No 42 
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.10  E-value=2.6e-09  Score=78.58  Aligned_cols=160  Identities=18%  Similarity=0.247  Sum_probs=106.5

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHHHHHH-HH
Q ss_conf             87289999766623----8---69999999998618998799997588-----88888999---------9999999-98
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAIFRAI-QK   92 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i~~ai-~~   92 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+..|+.++.|||.=..     .|++....         ..-...+ ..
T Consensus        11 ~~~Va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (259)
T PRK06494         11 KGPITIVTLNRPEVMNALHSDAHFELEKVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKWQAAGGKRGWPESGFAGLTSR   90 (259)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99999999737776789899999999999999863999359999758998157787767664224456526678999999


Q ss_pred             HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             41478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r   93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP  172 (293)
Q Consensus        93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~  172 (293)
                      +...||+++.+++.|..+|..+|++||.+++.+.+.++.--            -++|+-+.         .+.       
T Consensus        91 ~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~g~-------  142 (259)
T PRK06494         91 FDLDKPIIAAVNGVAMGGGFEIALACDLIIAAENATFALPE------------PRVGLAAL---------AGG-------  142 (259)
T ss_pred             HCCCCCEEEEECCEEEECCCEEEHHHCCCCCCCCCEEECHH------------HCCCCCCC---------CCH-------
T ss_conf             61999889997065862543000210105667783892746------------51488887---------309-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             9988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                        -..           +...+      .... .+-+..|+.++|++|+++||||++...+++..++.+.+
T Consensus       143 --~~~-----------l~~~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (259)
T PRK06494        143 --LHR-----------LPRQI------GLKRAMGMILTGRHVTAREGLELGFVNEVVPAGEALAAAERWA  193 (259)
T ss_pred             --HHH-----------HHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             --999-----------99997------2999999998399665999998699628878779999999999


No 43 
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.09  E-value=2.9e-09  Score=78.28  Aligned_cols=164  Identities=21%  Similarity=0.356  Sum_probs=107.4

Q ss_pred             CCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------
Q ss_conf             67787289999766623-8------69999999998618998799997588----8888899------------------
Q gi|254780747|r   32 EDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------------   82 (293)
Q Consensus        32 ~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------   82 (293)
                      +.++++|+.|.++-|=. +      .+++.+.++++.+|++++.|||.=..    .|++...                  
T Consensus         7 ~~~~~~Va~itlnRP~k~NAl~~~m~~el~~a~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   86 (269)
T PRK05864          7 DHPRPEIALVTLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGSVPHVEGLTRPTYALR   86 (269)
T ss_pred             EECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf             96679989999817132589899999999999998864899279999789998146856565045433344423567888


Q ss_pred             -HHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf             -999999999841-478679960332332232100011100013013534555653021024567774204225531552
Q gi|254780747|r   83 -GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM  160 (293)
Q Consensus        83 -~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~  160 (293)
                       .+.+.+.+..++ ..||||+.+++.|..||.-+|++||-+++.+++.++.-.+            ++|+.+-       
T Consensus        87 ~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~cD~ria~~~A~f~~~~~------------~~Gl~~~-------  147 (269)
T PRK05864         87 SMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI------------NNGLTAS-------  147 (269)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCEEEECCHHHHHCCCEEEECCCCEEECCCC------------CEEECCC-------
T ss_conf             999999999999858998899973857646357764177024358868955644------------7412578-------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             112346667899998877777666667789-9998514999889988734982378899877980623898999999997
Q gi|254780747|r  161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFV-RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA  239 (293)
Q Consensus       161 K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~-~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~  239 (293)
                       +.     ..                .+++ ..|-.+|     ..+-+..|+.++|++|+++|||+++...++..+.+.+
T Consensus       148 -~~-----G~----------------~~~L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~  200 (269)
T PRK05864        148 -EL-----GL----------------SYLLPRAIGSSR-----AFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA  200 (269)
T ss_pred             -CH-----HH----------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHHH
T ss_conf             -41-----27----------------788899868999-----9999981991279999977973368871089999999


Q ss_pred             HC
Q ss_conf             41
Q gi|254780747|r  240 LG  241 (293)
Q Consensus       240 ~~  241 (293)
                      ++
T Consensus       201 lA  202 (269)
T PRK05864        201 IA  202 (269)
T ss_pred             HH
T ss_conf             99


No 44 
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.09  E-value=2.2e-09  Score=78.96  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=107.7

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHH-------------HHHHHH
Q ss_conf             87289999766623-8------6999999999861899879999758-----888888999-------------999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS-----SPGGSAYAG-------------EAIFRA   89 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~~-------------~~i~~a   89 (293)
                      +++|++|.++-+-. +      ..++.+.++.+.+|+++++|||.=.     |.|+++...             ..+.+.
T Consensus        15 ~~~v~~itLnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vVl~gag~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   94 (262)
T PRK06144         15 QGGIARITFNRPAARNAMTWAMYEGLAAICEEIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRV   94 (262)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999748875799999999999999999863899149999579986253476578761457704578999999999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +..+. ..||+|+.+++.|..||.-++++||-+++.+.+.++.       |..+    .+|+-+                
T Consensus        95 ~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ias~~a~f~~-------p~~~----~lG~~~----------------  147 (262)
T PRK06144         95 LGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGF-------PIAR----TLGNCL----------------  147 (262)
T ss_pred             HHHHHHCCCCEEEEECCEEEECCCEEHHCCCEEEECCCCEEEC-------CEEE----ECCCCC----------------
T ss_conf             9999958998899975878607222011077767789978975-------4345----147777----------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             78999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                        ....-.           .+...+-.+|     ..+-+..|+.+++++|+++||||++-..++..+++.+.+.
T Consensus       148 --~~~~~~-----------~l~~~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~  203 (262)
T PRK06144        148 --SMSNLA-----------RLVALLGAAR-----VKDMLFTARLLEAEEALAAGLLNEVVPDAALDARADALAE  203 (262)
T ss_pred             --CHHHHH-----------HHHHHHCHHH-----HHHHHHCCCEECHHHHHHCCCHHHCCCHHHHHHHHHHHHH
T ss_conf             --714899-----------9999868999-----9999750887079999977984612490689999999999


No 45 
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.09  E-value=2.4e-09  Score=78.72  Aligned_cols=159  Identities=22%  Similarity=0.220  Sum_probs=103.4

Q ss_pred             CCEEEEEEEEEEE-----CC--HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH----------------H---
Q ss_conf             8728999976662-----38--6999999999861899879999758----888888999----------------9---
Q gi|254780747|r   35 SPHVARIAIRGQI-----ED--SQELIERIERISRDDSATALIVSLS----SPGGSAYAG----------------E---   84 (293)
Q Consensus        35 ~~~i~~i~i~G~I-----~~--~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~----------------~---   84 (293)
                      +++|+.|.++-|=     ..  .+++.+.++++.+|+.|+.|||+=+    |.|++....                .   
T Consensus        12 ~~~Va~itlnrP~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   91 (271)
T PRK06142         12 ADHVAQVTLNRPGKGNAMNPAFWSEIPEIFRWLDADPEVRAVVLSGAGKHFSYGIDLMAMAGVFGQLGKDGLGRNRTDLR   91 (271)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             99999999768887799899999999999999874889489998389986078768898733344333331125499999


Q ss_pred             ----HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf             ----9999999841-47867996033233223210001110001301353455565302102456777420422553155
Q gi|254780747|r   85 ----AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP  159 (293)
Q Consensus        85 ----~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~  159 (293)
                          ++...+..+. .+||+|+.+++.|..||.-++++||-+++.+.+.++.--            -++|+-+.      
T Consensus        92 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~~Gl~p~------  153 (271)
T PRK06142         92 REILRLQASINAVADCRKPVLAAVQGWCIGGAVDLISACDMRYASADAKFSIRE------------IDLGMVAD------  153 (271)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECCC------------CCCCCCCC------
T ss_conf             999999999999972899899998884440758999861512227985898950------------20344888------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH
Q ss_conf             2112346667899998877777666667789999851499988998-873498237889987798062389-89999999
Q gi|254780747|r  160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL  237 (293)
Q Consensus       160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l  237 (293)
                         .+       .-  ..           +...|      -..... -+..|+.+++++|++.||||++.. .++..+.+
T Consensus       154 ---~g-------~~--~~-----------l~~~i------G~~~a~~l~ltg~~i~A~eA~~~Glv~~vv~~~e~l~~~a  204 (271)
T PRK06142        154 ---VG-------TL--QR-----------LPRII------GDGHLRELAYTGRDIDAAEAEKIGLVNRVYDDAEALLAAA  204 (271)
T ss_pred             ---CC-------HH--HH-----------HHHHH------CHHHHHHHHHHCCEECHHHHHHCCCCCEECCCHHHHHHHH
T ss_conf             ---45-------99--99-----------99997------8999999983097615999998798406419889999999


Q ss_pred             HHH
Q ss_conf             974
Q gi|254780747|r  238 YAL  240 (293)
Q Consensus       238 ~~~  240 (293)
                      .+.
T Consensus       205 ~~~  207 (271)
T PRK06142        205 HAT  207 (271)
T ss_pred             HHH
T ss_conf             999


No 46 
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.09  E-value=2.2e-09  Score=78.97  Aligned_cols=159  Identities=22%  Similarity=0.282  Sum_probs=107.6

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHHH
Q ss_conf             87289999766623----8---69999999998618998799997588----8888899---------------999999
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIFR   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~~   88 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+.+|++++.|||.=+.    .|+++..               ...+.+
T Consensus        11 ~~~ia~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (261)
T PRK05995         11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD   90 (261)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999758676789899999999999999972999369999789984365767798875203782355667999999


Q ss_pred             HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             999841-4786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r   89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF  167 (293)
Q Consensus        89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~  167 (293)
                      .+..++ ..||||+.+++.|..||.-++++||-+++.+.+.++.-.+            ++|+-+.         .+.+ 
T Consensus        91 l~~~i~~~~kPvIaai~G~a~GgG~~Lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~~~~-  148 (261)
T PRK05995         91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV------------RLGLIPA---------TISP-  148 (261)
T ss_pred             HHHHHHHCCCCEEEEECCEEEECCHHHHHHCCEEECCCCCEEECHHH------------HEEECCC---------CCHH-
T ss_conf             99999968998999978988604177765166530338857865264------------4534465---------1100-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             678999988777776666677899998514999889988-73498237889987798062389899999999741
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                               .+           .      |-+......+ +..|+.+++++|+++||||++...++..++..+.+
T Consensus       149 ---------~l-----------~------~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~la  197 (261)
T PRK05995        149 ---------YV-----------I------RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPADALDAKVAELA  197 (261)
T ss_pred             ---------HH-----------H------HCCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             ---------24-----------4------2015999999887489687999997798023568679999999999


No 47 
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.09  E-value=2.4e-09  Score=78.78  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=105.0

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH--------------HHHHHH
Q ss_conf             87289999766623-8------69999999998618998799997588-----8888899--------------999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA--------------GEAIFR   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~--------------~~~i~~   88 (293)
                      +++|++|.++.|=. +      .+++.+.++.+.+|++++.|||.=..     .|++...              .+++..
T Consensus         9 ~~~va~ItlnRP~~~NAl~~~~~~~l~~al~~~~~d~~vr~vIltg~G~~~FcaG~D~~~~~~~~~~~~~~~~~~~~~~~   88 (256)
T TIGR03210         9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHS   88 (256)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999737464689999999999999998733999629999679974110477532221475411233016999999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99984147867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        89 ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +|++  .+||||+.+++.|..||.-++++||-+++.+++.++...+            ++|+-+.               
T Consensus        89 ~i~~--~~kPvIaav~G~a~GgG~~lal~~D~~iA~~~a~f~~p~~------------~lG~~~~---------------  139 (256)
T TIGR03210        89 AIRD--VPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP------------KVGSVDP---------------  139 (256)
T ss_pred             HHHH--CCCCEEEEECCEEEHHHHHHHHHHCCCCCCCCCEEECCCC------------EECCCCC---------------
T ss_conf             9984--8998999988866668699998524152347871777556------------1442078---------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             789999887777766666778999985149998899-887349823788998779806238989999999974
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL  240 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~  240 (293)
                       ..-  -..+                 .|.+..... +-++.|+.+++++|+++|||+++...++....+.+.
T Consensus       140 -~~~--~~~l-----------------~r~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  192 (256)
T TIGR03210       140 -GYG--TALL-----------------ARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKW  192 (256)
T ss_pred             -CCH--HHHH-----------------HHHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHH
T ss_conf             -506--8999-----------------9852399999999919907699999869705342846999999999


No 48 
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.07  E-value=3.3e-09  Score=77.88  Aligned_cols=160  Identities=21%  Similarity=0.275  Sum_probs=107.0

Q ss_pred             CCCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------H-------HHHH
Q ss_conf             677872899997666238------69999999998618998799997588----88888999------9-------9999
Q gi|254780747|r   32 EDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------E-------AIFR   88 (293)
Q Consensus        32 ~~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------~-------~i~~   88 (293)
                      ..+++.|+.|.++-|=.+      .+++.+.++.+.+|++|+.|||.=+.    .|++....      +       ...+
T Consensus         6 ~~~edGVa~ItlnrP~~NAl~~~m~~el~~~~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   85 (249)
T PRK07938          6 TTPEPGIAEVTVDYPPVNALPSRGWFALADAITAAGRDPDTRVVILRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA   85 (249)
T ss_pred             EECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             87369989999788877899999999999999998558992699997799972625767887537744567776525799


Q ss_pred             HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             999841-4786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r   89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF  167 (293)
Q Consensus        89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~  167 (293)
                      .++.+. ..||||+.+++.|..||.-++++||-+++.+.+.+|.       |+.     ++|+         .   +   
T Consensus        86 ~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~-------pev-----~~G~---------~---g---  138 (249)
T PRK07938         86 AFRAVYECPVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGL-------PEV-----DRGA---------L---G---  138 (249)
T ss_pred             HHHHHHHCCCCEEEEECCEEEEEEEEEEECCCHHHHCCCCEEEC-------CCC-----CCCC---------C---C---
T ss_conf             99999829998999975757661213120433444426877977-------565-----7511---------0---3---


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6789999887777766666778999985149998899-8873498237889987798062389899999999741
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                           . -..+           ...|      ..... +-++.|+.++|++|+++|||+++...++..+.+.+.+
T Consensus       139 -----~-~~~L-----------~rlv------G~~~A~el~ltg~~i~A~eA~~~GLvn~vv~~~~l~~~a~~~A  190 (249)
T PRK07938        139 -----A-ATHL-----------SRLV------PQHLMRRLFFTAATIDAAELHHFGSVHEVVPRDELDEAALRVA  190 (249)
T ss_pred             -----H-HHHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCHHEEECHHHHHHHHHHHH
T ss_conf             -----7-7799-----------9982------6999999997298147999997797260308459999999999


No 49 
>PRK07510 consensus
Probab=99.07  E-value=4.9e-09  Score=76.83  Aligned_cols=162  Identities=21%  Similarity=0.290  Sum_probs=107.1

Q ss_pred             CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------H
Q ss_conf             7872899997666238-------69999999998618998799997588----88888999------------------9
Q gi|254780747|r   34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------E   84 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~   84 (293)
                      -+++|++|.++-|=..       .+++.+.++++.+|+++++|||.=..    -|++....                  .
T Consensus        11 ~~~~ia~itlnrP~~~NAl~~~m~~el~~~~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (266)
T PRK07510         11 LDDGVLTITLNRPERRNALNDDLTRALVEAARRAADDPEVRAVLLTGAGGAFCAGGDVKSMAAARAAPPFEGAQRVANLR   90 (266)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             99999999975778789989999999999999986489945999978998605565789886144777632778999999


Q ss_pred             HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             9999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r   85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE  163 (293)
Q Consensus        85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~  163 (293)
                      ...+.+..+. .+|||++.+++.|..||.-++++||-+++.+.+.++.-            .-++|+.+.          
T Consensus        91 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~----------  148 (266)
T PRK07510         91 RRMEVSRLLHQMPKPTVAQIDGAAAGAGLSLALACDLRVAGASAKLTTA------------FAKVGLSGD----------  148 (266)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHCCCCHHCCCCCEEECC------------CCCEECCCC----------
T ss_conf             9999999998399988999879776422567650460101544378457------------654302886----------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                            +...  ..           +...|-.+|     ..+-+..|+.++|++|+++|||+++...++..+.+.+++
T Consensus       149 ------~g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la  202 (266)
T PRK07510        149 ------FGGT--YF-----------LTRLVGPAK-----ARELYLTSPVLSAAEALALGLVNRVVPDAEVEAEARALA  202 (266)
T ss_pred             ------CCHH--HH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ------3489--99-----------999962999-----999998299947999997797543458579999999999


No 50 
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.06  E-value=4.6e-09  Score=76.97  Aligned_cols=160  Identities=22%  Similarity=0.314  Sum_probs=106.7

Q ss_pred             CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------H----HHHHH
Q ss_conf             7872899997666238-------69999999998618998799997588----88888999---------9----99999
Q gi|254780747|r   34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------E----AIFRA   89 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------~----~i~~a   89 (293)
                      .++.|++|.++-+=.-       .+++.+.++.+.+|++++.|||.=+.    .|+++...         .    .+.+.
T Consensus        16 ~~~~Va~ItlnRP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l   95 (265)
T PRK08139         16 DRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRADPGLAYFRALFARCSRV   95 (265)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             77999999976887678989999999999999997589935999967998642787868975556778899999999999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +..+. ..||||+.+++.|..||.-+|++||-+++.+.+.+|.-.+            ++|+-              |..
T Consensus        96 ~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ias~~a~f~~pe~------------~~Gl~--------------~~~  149 (265)
T PRK08139         96 MQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGV------------NIGLF--------------CST  149 (265)
T ss_pred             HHHHHHCCCCEEEEECCEEEEEECHHHCCCCEEEECCCCCCCCCCC------------EECCC--------------CCC
T ss_conf             9999859998999977823541401100476645326522038655------------36625--------------576


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      ++..     +           .      |.+.... .+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus       150 ~~~~-----L-----------~------r~ig~~~a~~l~ltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a  201 (265)
T PRK08139        150 PMVA-----L-----------S------RNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA  201 (265)
T ss_pred             CHHH-----H-----------H------CCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf             2654-----4-----------0------1000888899986478406999998798047628779999999999


No 51 
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.06  E-value=5.9e-09  Score=76.30  Aligned_cols=161  Identities=18%  Similarity=0.275  Sum_probs=106.7

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHHH----------------
Q ss_conf             787289999766623-8------6999999999861899879999758----888888999999----------------
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEAI----------------   86 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~i----------------   86 (293)
                      .+++|++|.++-|-. +      .+++.+.++++.+|+++++|||.=.    |.|++......+                
T Consensus        12 ~d~~Va~itlnrP~k~Nal~~~~~~eL~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   91 (272)
T PRK06210         12 ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVG   91 (272)
T ss_pred             ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             47988999974756268999999999999999997299907999978999665167779886068410000014557776


Q ss_pred             ------HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf             ------99999841-47867996033233223210001110001301353455565302102456777420422553155
Q gi|254780747|r   87 ------FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP  159 (293)
Q Consensus        87 ------~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~  159 (293)
                            ......+. .+||+++.+++.|..||.-++++||-++|.+.+.++.       +..     ++|+-+.      
T Consensus        92 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~-------p~~-----~~Gl~p~------  153 (272)
T PRK06210         92 NRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTT-------AFA-----RRGLIAE------  153 (272)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEECCCEEEECCCCEEEC-------CCC-----CCCCCCC------
T ss_conf             5426789999999848998899982366048751221365434247757966-------745-----5276887------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             2112346667899998877777666667789999851499988-998873498237889987798062389899999999
Q gi|254780747|r  160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                         .+     .+    ..+.           ..      +-.. ..+-+..|+.++|++|+++|||+++...+++.+.+.
T Consensus       154 ---~g-----~~----~~l~-----------r~------iG~~~a~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~  204 (272)
T PRK06210        154 ---HG-----IS----WILP-----------RL------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL  204 (272)
T ss_pred             ---CC-----HH----HHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf             ---32-----99----9999-----------98------76999999998499998899997798527538158999999


Q ss_pred             HHC
Q ss_conf             741
Q gi|254780747|r  239 ALG  241 (293)
Q Consensus       239 ~~~  241 (293)
                      +.+
T Consensus       205 ~~a  207 (272)
T PRK06210        205 AYA  207 (272)
T ss_pred             HHH
T ss_conf             999


No 52 
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.06  E-value=3.9e-09  Score=77.42  Aligned_cols=162  Identities=18%  Similarity=0.252  Sum_probs=104.9

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------HH
Q ss_conf             87289999766623-8------69999999998618998799997588----88888999------------------99
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------EA   85 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~~   85 (293)
                      +++|+.|.++-+=. +      .+++.+.++.+.+|++|+.|||.=..    .|++....                  ..
T Consensus        11 ~~gIa~ItlnrP~~~Nal~~~m~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~D~~~l~~~~~~~~~~~~~~~~~~~~   90 (257)
T PRK07110         11 EEGIAQVTMQDRENKNAFSDELVRQLHGAFDTIAQDPRCKVVILTGYPNYFATGGTQEGLLSLSEGKGTFTDYKTNIEHE   90 (257)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89989999738887899899999999999999976899169999889986525666788875441553114678889999


Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             99999984-14786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r   86 IFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP  164 (293)
Q Consensus        86 i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~  164 (293)
                      ....++.+ ..+||||+.+++.|..||.-+|++||-+++.+.+.++.       +.     -++|+-+.           
T Consensus        91 ~~~~~~~~~~~~kPvIaavnG~a~GgG~~lal~cD~ria~~~a~f~~-------pe-----~~lGl~p~-----------  147 (257)
T PRK07110         91 YANLYSLALNCPIPVIAAMQGHAIGGGFVMGLYADFVVLSEESVYTT-------NF-----MKYGFTPG-----------  147 (257)
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC-----------
T ss_conf             99999999819998999978788577689973268789869977977-------50-----05675977-----------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             466678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                           +.  ....+           ...|-.++     ..+-+..|+.++|++|+++|||+++...++..++..+.+.
T Consensus       148 -----~g--~~~~l-----------~~~vG~~~-----a~~llltg~~i~a~eA~~~Glv~~vvp~~~l~~~a~~~A~  202 (257)
T PRK07110        148 -----MG--ATAIL-----------PEKLGYYL-----GQEMLLTARSYRGAELQKRGVPFPVLPRAEVLEKALELAR  202 (257)
T ss_pred             -----CC--HHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             -----43--99999-----------99866999-----9999984997689999974987467786389999999999


No 53 
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.06  E-value=5.4e-09  Score=76.55  Aligned_cols=162  Identities=23%  Similarity=0.300  Sum_probs=106.9

Q ss_pred             CCCEEEEEEEEEEE-----CC---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------H-
Q ss_conf             78728999976662-----38---69999999998618998799997588----888889999---------------9-
Q gi|254780747|r   34 NSPHVARIAIRGQI-----ED---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------A-   85 (293)
Q Consensus        34 ~~~~i~~i~i~G~I-----~~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~-   85 (293)
                      .+++|+.|.++-|=     .+   .+++.+.++.+.+|+.++.|||.=..    .|++.....               . 
T Consensus         9 ~~~~Va~itlnrP~~~Nal~~~~~~~el~~~l~~~~~d~~vrvvVitg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (266)
T PRK09245          9 RDGHIVTLTMNRPETRNALSGNDAVDALVAACARINADRSVRAVILTGAGTAFSSGGNVKDMRARAGAFGGSPADIRQGY   88 (266)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99999999975867467879999999999999988409982699997888704256568999753156667677899999


Q ss_pred             ---HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             ---999999841-4786799603323322321000111000130135345556530210245677742042255315521
Q gi|254780747|r   86 ---IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK  161 (293)
Q Consensus        86 ---i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K  161 (293)
                         +.+....+. .+||+|+.+++.|..||..++++||-+++.+.+.++.       ++     -++|+-+.        
T Consensus        89 ~~~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~va~~~a~f~~-------pe-----~~~Gi~p~--------  148 (266)
T PRK09245         89 RRGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAE-------SF-----VKLGLIPG--------  148 (266)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC--------
T ss_conf             99999999999838998899982666253057776077545135757967-------40-----27655877--------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             12346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                              ....  ..           +...|-.+|     ..+-+..|+.++|++|+++||||++...++..+.+.+.+
T Consensus       149 --------~g~~--~~-----------l~r~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~el~~~a~~~a  202 (266)
T PRK09245        149 --------DGGA--WL-----------LPRIIGMAR-----AAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA  202 (266)
T ss_pred             --------CCHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH
T ss_conf             --------6799--99-----------999974999-----999998199987999998798417508678999999999


No 54 
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.06  E-value=9.1e-10  Score=81.42  Aligned_cols=160  Identities=17%  Similarity=0.182  Sum_probs=104.7

Q ss_pred             CCCCCEEEEEEEEEE-ECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HH
Q ss_conf             677872899997666-238------69999999998618998799997588----88888999---------------99
Q gi|254780747|r   32 EDNSPHVARIAIRGQ-IED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EA   85 (293)
Q Consensus        32 ~~~~~~i~~i~i~G~-I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~   85 (293)
                      +.-++.|++|.++-+ -.+      .+++.+.++++..|+.+++|||.=..    .|++....               ..
T Consensus        11 ~~~~DGVA~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~AGaDl~e~~~~~~~~~~~~~~~~~~   90 (715)
T PRK11730         11 DWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAVPEEELSQWLHF   90 (715)
T ss_pred             EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99458889999638876789899999999999999850999759999789981572708787852546887889888888


Q ss_pred             HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             999999841-4786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r   86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP  164 (293)
Q Consensus        86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~  164 (293)
                      ....+.++. ..||||+.+++.|..||+-+|.+||..++.+.+.+|.--+            ++|+-+         +.+
T Consensus        91 ~~~~~~~ie~~~kPvIAAI~G~AlGgGlelALacd~Rias~~a~~g~pev------------~lGl~p---------g~G  149 (715)
T PRK11730         91 ANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPTARIGLPET------------KLGIMP---------GFG  149 (715)
T ss_pred             HHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC------------CCCCCC---------CCC
T ss_conf             89999999719998899988884279899999689999639988978654------------757287---------984


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             46667899998877777666667789999851499988-998873498237889987798062389899999999
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                      ..         ..+-                 |-+-.. ..+-+..|+.+++++|+++||||++...++..+.+.
T Consensus       150 gt---------~rLp-----------------rliG~~~A~~l~l~G~~~~a~~A~~~GLvd~vv~~~~L~~~A~  198 (715)
T PRK11730        150 GT---------VRLP-----------------RLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAAL  198 (715)
T ss_pred             HH---------HHHH-----------------HHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHH
T ss_conf             25---------3754-----------------1326999973541179788999986898646258067899999


No 55 
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.06  E-value=4.7e-09  Score=76.92  Aligned_cols=160  Identities=14%  Similarity=0.166  Sum_probs=109.2

Q ss_pred             CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH---------------HHHHHH
Q ss_conf             787289999766623----8---69999999998618998799997588----888889---------------999999
Q gi|254780747|r   34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY---------------AGEAIF   87 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~---------------~~~~i~   87 (293)
                      ..+.|+.|.++-|=.    +   ..++.+.++.+.+|++|++|||.=+.    .|++..               ....+.
T Consensus        12 ~~~GVa~itLnRP~~~Nal~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   91 (271)
T PRK05674         12 DPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELA   91 (271)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             49978999972878668989999999999999886589917999988999732787347665324566100267899999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.+..+. .+|||++.+++.|..||.-+|++||-+++.+++.++.-.       .     ++|+-+.         .++ 
T Consensus        92 ~~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~pe-------~-----~lGl~p~---------~~~-  149 (271)
T PRK05674         92 ELMYALARLKIPTLAVVQGAAFGGALGLISCCDMAIGAEDAQFCLSE-------V-----RIGLAPA---------VIS-  149 (271)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHEHHHHHHHHCCEEECCCCCEEECCC-------C-----CEEECCC---------CHH-
T ss_conf             99999996899899997783002468887630622211156160545-------5-----4667456---------148-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             667899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                                          ..+...|      ... ..+-+..|+.++|++|.++|||+++...++....+.+.+
T Consensus       150 --------------------~~l~~~i------G~~~A~~llltg~~~sA~eA~~~Glv~~vv~~~el~~~a~~~a  199 (271)
T PRK05674        150 --------------------PFVVKAI------GERAARRYALTAERFDGRRARELGLLAESYPAAELDAQVEAWI  199 (271)
T ss_pred             --------------------HHHHHHH------HHHHHHHHHHHCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHH
T ss_conf             --------------------7899996------3999999998489347999998799206857779999999999


No 56 
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.05  E-value=4.9e-09  Score=76.80  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=107.2

Q ss_pred             CCEEEEEEEEEEE-C---C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-----------HHHHHHHHHH
Q ss_conf             8728999976662-3---8---6999999999861899879999758----88888899-----------9999999998
Q gi|254780747|r   35 SPHVARIAIRGQI-E---D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-----------GEAIFRAIQK   92 (293)
Q Consensus        35 ~~~i~~i~i~G~I-~---~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-----------~~~i~~ai~~   92 (293)
                      +++|+.|.++-|= .   +   .+++.+.++.+.+|+.+++|||.=.    |-|++...           ..++.+.+..
T Consensus        10 ~~~va~ItlNrPek~Nals~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (248)
T PRK06023         10 KGAVQVIRFNRPEKKNAITRAMYAAMAKALKAGDADDAIRAHVFLGVPGAFSSGNDMQDFMAAAMGGTSFGSEILDFLIA   89 (248)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999748888899899999999999999854899369999789986608988688864123551457999999999


Q ss_pred             HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf             41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r   93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN  171 (293)
Q Consensus        93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s  171 (293)
                      +. ..|||++.++++|..||.-++++||-+++.+.+.++.-.            -++|+-+.                +.
T Consensus        90 l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p~------------~~~Gl~p~----------------~g  141 (248)
T PRK06023         90 LAETEKPIVSGVDGLAIGIGTTIHLHCDLTFATPRSLFRTPF------------VDLGLVPE----------------AG  141 (248)
T ss_pred             HHHCCCCEEEEEECEEEHHHHHHHHCCCEEEECCCCEEECHH------------CCEEECCC----------------CC
T ss_conf             995899899998153301468997234645634786382320------------26734876----------------52


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             99988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      -  -..+.           ..      +.... .+-+..|+.|+|++|+++|||+++...++..+.+.+.+
T Consensus       142 ~--~~~l~-----------r~------iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A  193 (248)
T PRK06023        142 S--SLLAP-----------RL------MGHQRAFALLALGEGFSAEAAQEAGLIYKIVDEEALEAEVLKAA  193 (248)
T ss_pred             H--HHHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             9--99999-----------99------74999999998399410999816899133358689999999999


No 57 
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.05  E-value=6.2e-09  Score=76.17  Aligned_cols=161  Identities=25%  Similarity=0.298  Sum_probs=108.0

Q ss_pred             CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH
Q ss_conf             872899997666238-------69999999998618998799997588----88888999----------9999999984
Q gi|254780747|r   35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV   93 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~   93 (293)
                      ++.|+.|.++-+=..       .+++.+.++.+.+|++++.|||.=+.    .|++....          .++...+..+
T Consensus        11 ~~~Ia~itlnrp~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l   90 (257)
T PRK05862         11 RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKV   90 (257)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999758998789899999999999999985999359999889983146878577435661557777799999999


Q ss_pred             C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r   94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP  172 (293)
Q Consensus        94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~  172 (293)
                      + .+||||+.+++.|..||.-++++||-+++.+.+.++.-            .-++|+-+.                +..
T Consensus        91 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~~Gl~p~----------------~g~  142 (257)
T PRK05862         91 ARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQP------------EIKLGVLPG----------------MGG  142 (257)
T ss_pred             HHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECH------------HHCCCCCCC----------------CCH
T ss_conf             8589998999768860424588773453130478637154------------420466888----------------459


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      .  ..+           ...|-.+|     ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus       143 ~--~~l-----------~r~iG~~~-----a~~llltg~~~~a~ea~~~Glv~~v~~~~~l~~~a~~~a  193 (257)
T PRK05862        143 S--QRL-----------TRAVGKAK-----AMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA  193 (257)
T ss_pred             H--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf             9--999-----------99987999-----999998289986999998799147638458999999999


No 58 
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.05  E-value=3e-09  Score=78.16  Aligned_cols=160  Identities=17%  Similarity=0.257  Sum_probs=105.4

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH----------HHHHHHHHHHHH
Q ss_conf             87289999766623----8---69999999998618998799997588----888889----------999999999984
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY----------AGEAIFRAIQKV   93 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~----------~~~~i~~ai~~~   93 (293)
                      +++|+.|.++-|=.    +   .+++.+.++.+.+|+.++.|||.=..    -|++..          ......+.+..+
T Consensus        11 ~~~Va~ItlnRP~~~Nal~~~m~~el~~al~~~~~d~~vrvvVltg~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (258)
T PRK06190         11 HDRVRTLTLNRPQARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGLAYGAADALPDIVPAW   90 (258)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             89999999758998899899999999999998865899369999789987528879788704641013566688999999


Q ss_pred             C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r   94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP  172 (293)
Q Consensus        94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~  172 (293)
                      . ..||+++.+++.|..||.-++++||-+++.+++.++.--            -++|+-+.         .     ..+ 
T Consensus        91 ~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~~-  143 (258)
T PRK06190         91 PAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTH------------ARVGILPG---------W-----GLS-  143 (258)
T ss_pred             HHCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCEEECCC------------CCCCCCCC---------C-----CHH-
T ss_conf             96899999997770304438987247668855981897852------------21287998---------6-----599-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             9988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                         .           .+...|      .... .+-+..|+.++|++|++.|||+++...++..++..+.+
T Consensus       144 ---~-----------~L~r~v------G~~~A~ellltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A  193 (258)
T PRK06190        144 ---V-----------RLPQKV------GIGRARRMSLTGNFLDAEDALRAGLVTEVVPHDELLPAARRLA  193 (258)
T ss_pred             ---H-----------HHHHHH------CHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ---9-----------999997------9999999998099985999997797434508569999999999


No 59 
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.05  E-value=7.1e-09  Score=75.82  Aligned_cols=160  Identities=22%  Similarity=0.291  Sum_probs=105.8

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHH-------
Q ss_conf             87289999766623----8---69999999998618998799997588-----88888999---------999-------
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAI-------   86 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i-------   86 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+.+|++++.|||.=..     .|+++...         ...       
T Consensus        10 ~~~va~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~ir~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (260)
T PRK05980         10 RDGIALLTLNRPEKLNALSYALIDRLMARLDAIEVDESVRAVILTGAGERAFSAGADIHEFSASVAAGPDVALRDFVRRG   89 (260)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999737675799999999999999999862999339999669983443576767641210147247899999999


Q ss_pred             HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r   87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS  165 (293)
Q Consensus        87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~  165 (293)
                      .+.+..+. ..||+|+.+++.|..||.-++++||-+++.+.+.++.--            -++|+-+.            
T Consensus        90 ~~~~~~l~~~~kPvIa~v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~------------  145 (260)
T PRK05980         90 QTMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERARFAKPE------------IKLAMPPT------------  145 (260)
T ss_pred             HHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCCCCCCEECCCC------------CCEEECCC------------
T ss_conf             999999997899989997788877753544204130147778353752------------51753877------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             66678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                          +.-.  ..+           ...      +-... .+-+..|+.++|++|.++||||++...+++.+++.+++
T Consensus       146 ----~g~~--~~l-----------~r~------iG~~~A~~~~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la  199 (260)
T PRK05980        146 ----FGGT--QRL-----------PRL------AGRKRALELLLTGDAFSAQRALEIGLVNAVVPHDELIPAARALA  199 (260)
T ss_pred             ----CCHH--HHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ----3679--999-----------999------64999999998099868999987699716528668999999999


No 60 
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.04  E-value=5.5e-09  Score=76.51  Aligned_cols=161  Identities=21%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH-----------HHHHHHHH
Q ss_conf             872899997666238------69999999998618998799997588-----888889999-----------99999998
Q gi|254780747|r   35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE-----------AIFRAIQK   92 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~-----------~i~~ai~~   92 (293)
                      +++|+.|.++-|=.+      .+++.+.++.+.+|++++.|||.=..     .|++.....           .....+.+
T Consensus        11 ~g~Va~itlnrP~~NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T PRK03580         11 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTE   90 (262)
T ss_pred             ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999558764779999999999999998619996599996699960426710766534786431342667899999


Q ss_pred             HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf             41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r   93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN  171 (293)
Q Consensus        93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s  171 (293)
                      +. ..||||+.+++.|..||.-+|++||-+++.+.+.++.-.+            ++|+-+.                ..
T Consensus        91 l~~~~kPvIaaV~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~lGl~p~----------------~g  142 (262)
T PRK03580         91 IFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVPD----------------SG  142 (262)
T ss_pred             HHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCEECHHH------------CCCCCCC----------------CC
T ss_conf             9819999999986866618699988527024147876515776------------0367888----------------54


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             9998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      -  ..           .+...|-.+|     ..+-+..|+.+++++|+++|||+++...++..+.+.+++
T Consensus       143 ~--~~-----------~l~r~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la  194 (262)
T PRK03580        143 G--VL-----------RLPKRLPPAI-----VNEMLMTGRRMDAEEALRWGLVNRVVSQAELMDRARELA  194 (262)
T ss_pred             H--HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf             9--99-----------9999970999-----999987189875999988799105438469999999999


No 61 
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.04  E-value=1e-08  Score=74.87  Aligned_cols=165  Identities=20%  Similarity=0.262  Sum_probs=110.2

Q ss_pred             CCCCCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH------------HHH
Q ss_conf             5567787289999766623----8---6999999999861899879999758-----88888899------------999
Q gi|254780747|r   30 HVEDNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS-----SPGGSAYA------------GEA   85 (293)
Q Consensus        30 ~~~~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~------------~~~   85 (293)
                      .....++.|+.|.++-|=.    +   .+++.+.++.+.+|++++.|||.=+     |.|+++..            ...
T Consensus        11 ~v~~~e~gVa~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvvVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~   90 (260)
T PRK06143         11 GVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR   90 (260)
T ss_pred             EEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHH
T ss_conf             48980898899997589887999999999999999988538995599996588776348856798861596568999999


Q ss_pred             HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             999999841-4786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r   86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP  164 (293)
Q Consensus        86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~  164 (293)
                      +++.+..++ .+||+|+.+++.|..||.-++++||-+++.+++.++.       +.     -++|| +.         . 
T Consensus        91 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~-------pe-----~~~Gi-p~---------~-  147 (260)
T PRK06143         91 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGM-------PE-----VRVGI-PS---------V-  147 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEECCEEECCCHHHHHCCCEEEECCCCCEEC-------CC-----CCCCC-CC---------C-
T ss_conf             99999999948998899987961104257664477653223652317-------10-----15575-88---------6-


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             46667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                           ..   ...+           ...+-.+|     ..+-+..|+.++|++|+++||||++...++...++.+.+
T Consensus       148 -----~~---~~~l-----------~r~iG~~~-----A~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A  200 (260)
T PRK06143        148 -----IH---AALL-----------PRLIGWAR-----TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA  200 (260)
T ss_pred             -----CH---HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             -----38---9999-----------99987999-----999998599888999998496143518579999999999


No 62 
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.04  E-value=5.8e-09  Score=76.36  Aligned_cols=161  Identities=17%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHH-----
Q ss_conf             87289999766623----8---69999999998618998799997588----88888999------------999-----
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAI-----   86 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i-----   86 (293)
                      ++.|+.|.++-|=.    +   .+++.+.++.+.+|++++.|||.=..    .|++....            ...     
T Consensus        16 ~~~Va~itlnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~e~~~~~~~~~~~~~~~~~~~~~   95 (277)
T PRK09120         16 EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDELEFDDDAGVLVLTGEGEAWTAGMDLKEYFRETDAQPEILQEKIRRESS   95 (277)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999999778776789999999999999999972999559999889997246868899852144663356899999876


Q ss_pred             HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf             99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r   87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS  165 (293)
Q Consensus        87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~  165 (293)
                      ...++.++ ..|||++.+++.|..||.-++++||-+++.+.+.+|.--            -++|+-+.         .+ 
T Consensus        96 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~lalacDi~ia~~~A~f~~pe------------~~~Gl~p~---------~g-  153 (277)
T PRK09120         96 GWQWRRLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSE------------INWGIPPG---------GL-  153 (277)
T ss_pred             HHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHHHHHHHCCCCEEECCC------------CCCCCCCC---------CC-
T ss_conf             899999971899999998884540779999975111105582895772------------03587888---------66-


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                          .+               ..+...|-..|     ..+-+..|+.+++++|+++|||+++...++..+...+++
T Consensus       154 ----~~---------------~~l~r~vG~~~-----A~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~lA  205 (277)
T PRK09120        154 ----VS---------------KAMADTVGHRD-----ALYYIMTGETFDGRKAAEMGLVNESVPLAQLRARVRELA  205 (277)
T ss_pred             ----HH---------------HHHHHHHCHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ----89---------------99999969799-----999986389377999998799505608889999999999


No 63 
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.04  E-value=2.6e-09  Score=78.57  Aligned_cols=164  Identities=17%  Similarity=0.225  Sum_probs=106.8

Q ss_pred             CCCCCCEEEEEEEEEE--ECC------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH---------H----H
Q ss_conf             5677872899997666--238------6999999999861899879999758-----88888899---------9----9
Q gi|254780747|r   31 VEDNSPHVARIAIRGQ--IED------SQELIERIERISRDDSATALIVSLS-----SPGGSAYA---------G----E   84 (293)
Q Consensus        31 ~~~~~~~i~~i~i~G~--I~~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~---------~----~   84 (293)
                      .+..++.|++|.++-+  -.+      .+++.+.++++..|++|++|||.-.     +.|++...         .    .
T Consensus         9 ~~~~~dgIa~itlnrP~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~   88 (706)
T PRK11154          9 LNVRLDNIAILTIDVPGEKMNTLKAEFAEQVRAILKQIKEDKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR   88 (706)
T ss_pred             EEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHH
T ss_conf             99867998999989999776789999999999999998509996699995179980470729776724787577999998


Q ss_pred             HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             9999999841-478679960332332232100011100013013--5345556530210245677742042255315521
Q gi|254780747|r   85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK  161 (293)
Q Consensus        85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s--~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K  161 (293)
                      ..+..+.++. ..||||+.+++.|..||+-+|.+||..++.+++  .+|.--+            ++|+-+         
T Consensus        89 ~~~~~~~~i~~~~kPvIAAvnG~a~GgG~ElaLacD~RiAs~~a~~~~g~Pev------------~lGl~P---------  147 (706)
T PRK11154         89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP---------  147 (706)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCC------------EECCCC---------
T ss_conf             88999999980999889998786418999999968999961784632136431------------027788---------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             12346667899998877777666667789999851499988-99887349823788998779806238989999999974
Q gi|254780747|r  162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL  240 (293)
Q Consensus       162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~  240 (293)
                      ..+-.         ..+-                 |-+-.. ..+-+..|+.+++++|+++||||++...++.++.+.+.
T Consensus       148 g~Ggt---------~rLp-----------------RliG~~~A~eliltG~~i~A~eA~~~GLVd~VVp~~~L~~~A~~~  201 (706)
T PRK11154        148 GSGGT---------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLEVAVEL  201 (706)
T ss_pred             CCCCH---------HHCC-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf             99724---------0221-----------------123899999764007878899999779875515908999999999


Q ss_pred             C
Q ss_conf             1
Q gi|254780747|r  241 G  241 (293)
Q Consensus       241 ~  241 (293)
                      +
T Consensus       202 a  202 (706)
T PRK11154        202 A  202 (706)
T ss_pred             H
T ss_conf             9


No 64 
>PRK07629 consensus
Probab=99.04  E-value=7.3e-09  Score=75.72  Aligned_cols=160  Identities=20%  Similarity=0.245  Sum_probs=107.0

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH
Q ss_conf             787289999766623-8------69999999998618998799997588----88888999---------------9999
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF   87 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~   87 (293)
                      -++.|+.|.++-|=. +      .+++.+.++.+.+|++++.|||.=..    .|++....               ..+.
T Consensus        10 ~~~~va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vrvvvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (261)
T PRK07629         10 QAGRVATVTLNRPDVRNAFNETMIAELTAAFRALDADDDVRAVVLAARGPAFCAGADLNWMKRMAGYSDDENRADARKLA   89 (261)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999976847568979999999999999996299916999977998214676708888511367255677799999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.+..+. ..||||+.+++.|..||.-+|++||-+++.+.+.++.--            -++|+-+.         .+. 
T Consensus        90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p~------------~~~Gl~p~---------~~~-  147 (261)
T PRK07629         90 RMLRTIYECPKPTIARVHGDAYAGGMGLVAACDIAVAADTAKFCLSE------------VRLGLIPA---------TIS-  147 (261)
T ss_pred             HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECHH------------CCCCCCCC---------CHH-
T ss_conf             99999995899899997895443607997733421314787575510------------34461777---------558-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                                          ..+...|      .... .+-+..|+.|++++|+++|||+++...++..++..+.+
T Consensus       148 --------------------~~~~r~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A  197 (261)
T PRK07629        148 --------------------PYVIRAM------GERAARRYFLTAERFDAAEALRLGFVHEVVPADALDAKVAELA  197 (261)
T ss_pred             --------------------HHHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf             --------------------8999997------8999999998687226999997798618738679999999999


No 65 
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.04  E-value=8.4e-09  Score=75.33  Aligned_cols=161  Identities=22%  Similarity=0.323  Sum_probs=108.3

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH--------HHH----HHHH
Q ss_conf             87289999766623----8---69999999998618998799997588-----88888999--------999----9999
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG--------EAI----FRAI   90 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~--------~~i----~~ai   90 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+.+|+.+++|||+=+.     .|++....        ...    .+.+
T Consensus        11 ~~~va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vr~vvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (260)
T PRK05809         11 EGNIAVVTINRPKALNALNSETLKELDTVLDDLENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF   90 (260)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999758987789799999999999999986899569999668988740799747653068767899999999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      ..++ ..||+|+.+++.|..||.-++++||-+++.+.+.++.-.            -++|+.+.                
T Consensus        91 ~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~----------------  142 (260)
T PRK05809         91 RRLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPE------------VGLGITPG----------------  142 (260)
T ss_pred             HHHHHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HCCCCCCC----------------
T ss_conf             99983899889997596666502765420134515897286520------------02345887----------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             89999887777766666778999985149998899-88734982378899877980623898999999997418
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                      +.-  ...           +...      +..... +-+..|+.|++++|+++||||++...+++.+.+.+++.
T Consensus       143 ~g~--~~~-----------l~~~------iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~  197 (260)
T PRK05809        143 FGG--TQR-----------LARI------VGPGKAKELIYTGDMIKAEEALRIGLVNKVVEPEKLMEEAKALAN  197 (260)
T ss_pred             CCH--HHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             448--999-----------9998------599999999970982579999987997087484689999999999


No 66 
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.03  E-value=9.1e-09  Score=75.12  Aligned_cols=160  Identities=24%  Similarity=0.301  Sum_probs=108.4

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHHHHHH
Q ss_conf             87289999766623-8------6999999999861899879999758----88888899--------------9999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEAIFRA   89 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~i~~a   89 (293)
                      .+.|++|.++-+-. +      .+++.+.++.+.+|+++++|+|.=+    |.|++...              .+.+.+.
T Consensus         6 ~~~i~~i~ln~p~~~Nal~~~~~~~l~~~~~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   85 (195)
T cd06558           6 DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQEL   85 (195)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             89999999858886799899999999999999974999579999749987047997588872666668899999999999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +..+. .+||+++.+++.|..+|..++++||.+++.+.+.++.-.+            ++|+.+.               
T Consensus        86 ~~~i~~~~kPvIaai~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~G~~p~---------------  138 (195)
T cd06558          86 LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV------------KLGLVPG---------------  138 (195)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCEEECCHH------------CCCCCCC---------------
T ss_conf             9999978999999868852777506466188899808985746621------------1433887---------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                       +  -.-..           +...      +.... .+-+..|+.+++++|++.||||++...+++.+.+.+.+
T Consensus       139 -~--~~~~~-----------l~~~------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a  192 (195)
T cd06558         139 -G--GGTQR-----------LPRL------VGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA  192 (195)
T ss_pred             -C--HHHHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH
T ss_conf             -2--19999-----------9998------59999999997398577999997696206857879999999999


No 67 
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.03  E-value=1.2e-08  Score=74.31  Aligned_cols=165  Identities=21%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHHHHH
Q ss_conf             787289999766623----8---69999999998618998799997588----8888899------------99999999
Q gi|254780747|r   34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIFRAI   90 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~~ai   90 (293)
                      -++.|+.|.++-|=.    +   .+++.+.++.+.+|+.+++|||.=..    .|++...            ...+++.+
T Consensus         9 ~~~~Va~itlnrP~k~Nal~~~m~~eL~~al~~~~~d~~vr~vvltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T PRK05870          9 VDDHVALITVNDPDRRNAVTDEMSAQLRAAVQAAEADPDVHALVVTGAGKAFCAGADLTALGAAVGGPAEDGLRRVYDGF   88 (254)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999974788689989999999999999986199956999987998257278468876054642789999999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      ..+. ..||+++.+++.|..||.-++++||-+++.+++.++.       ++     -++|+.+.         .+.    
T Consensus        89 ~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~-------p~-----~~lGl~p~---------~g~----  143 (254)
T PRK05870         89 MAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPAALFDP-------RF-----QKLGLHPG---------GGA----  143 (254)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC---------CCH----
T ss_conf             999968999999987714656716664176899859978835-------20-----27720888---------788----


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHCCCC
Q ss_conf             899998877777666667789999851499988998873498237889987798062389--899999999741877
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALGVDQ  244 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~~~~  244 (293)
                           -..           +...|-.+|     ..+-+..|+.+++++|+++|||+++..  ..++.+.+.+++..+
T Consensus       144 -----~~~-----------L~r~iG~~~-----A~ellltg~~i~A~eA~~~Glv~~Vv~d~~~~a~~lA~~ia~~p  199 (254)
T PRK05870        144 -----TWM-----------LQRAVGPQV-----ARAALLFGMRFDAEEAVRHGLALMVADDPVAAALELAAGPAAAP  199 (254)
T ss_pred             -----HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCC
T ss_conf             -----999-----------999970999-----99999939988699999869986677855899999999998579


No 68 
>PRK07396 naphthoate synthase; Validated
Probab=99.02  E-value=2.8e-09  Score=78.37  Aligned_cols=161  Identities=20%  Similarity=0.309  Sum_probs=104.1

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH-----------HH--HHHHH
Q ss_conf             87289999766623-8------69999999998618998799997588-----8888899-----------99--99999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA-----------GE--AIFRA   89 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~-----------~~--~i~~a   89 (293)
                      +++|+.|.++-+=. +      .+++.+.++.+.+|++++.|||.=..     .|++...           ..  .+.+.
T Consensus        20 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~   99 (273)
T PRK07396         20 SDGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGDGGYVDDDGVPRLNVLDL   99 (273)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             89999999678665799999999999999999850998269999789985042587645422456678420103208999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      .+.++ ..||||+.+++.|..||.-+|++||-+++.+++.+|....            ++|+-..         .     
T Consensus       100 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~A~f~~~~~------------~~G~~~~---------~-----  153 (273)
T PRK07396        100 QRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP------------KVGSFDG---------G-----  153 (273)
T ss_pred             HHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCEECCCCEEECCCC------------CCCCCCC---------C-----
T ss_conf             9999829999999985877607699998528012237988977665------------1470677---------3-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             7899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                       ..   -..           +...|-..|     ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus       154 -~g---~~~-----------L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~A  206 (273)
T PRK07396        154 -YG---ASY-----------LARIVGQKK-----AREIWFLCRQYNAQEALDMGLVNTVVPLEDLEKETVRWC  206 (273)
T ss_pred             -CH---HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             -25---789-----------999856999-----999998289877999997798113558768999999999


No 69 
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.02  E-value=1.1e-08  Score=74.62  Aligned_cols=160  Identities=18%  Similarity=0.239  Sum_probs=102.7

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCC-CCCEEEEECC----CCCCCHHHH--------------HH---
Q ss_conf             87289999766623-8------699999999986189-9879999758----888888999--------------99---
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDD-SATALIVSLS----SPGGSAYAG--------------EA---   85 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~-~ik~ivL~i~----SpGG~~~~~--------------~~---   85 (293)
                      +++|+.|.++-+=. +      ..++.+.++++.+|+ .+++|||+-.    |.|++....              ..   
T Consensus        11 ~~~ia~ItlnrP~~~Nal~~~m~~el~~al~~~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (266)
T PRK05981         11 DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDKKAEVRCLVITGAGRGFCTGANLQGRGSGNKMSQSGKDAGAALET   90 (266)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             99999999747887899999999999999999983999879999988998722775366540122112234036899999


Q ss_pred             -HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             -999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r   86 -IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE  163 (293)
Q Consensus        86 -i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~  163 (293)
                       ....+.+++ .+||||+.+++.|..||.-++++||.+++.+++.++.-            .-++|+-+.         .
T Consensus        91 ~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~ias~~a~f~~~------------~~~lGl~p~---------~  149 (266)
T PRK05981         91 AYHPFLRRLRNLHCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQA------------FRRIGLVPD---------G  149 (266)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHCCCCCCCCCCCEEECC------------CCCEEECCC---------C
T ss_conf             9999999999589998999807663263677630640565788789756------------656601787---------6


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             3466678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      +.       -  ..+.           ..+      -... .+-+..|+.+++++|+++|||+++...++..+++.+.+
T Consensus       150 g~-------~--~~l~-----------r~i------G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A  202 (266)
T PRK05981        150 GS-------T--WLLP-----------RLV------GKARAMELSLLGEKLPAETALEWGLVNRVYDDAELMAEAMKLA  202 (266)
T ss_pred             CH-------H--HHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf             39-------9--9999-----------986------6999999998299875999997798126708579999999999


No 70 
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.02  E-value=1.1e-08  Score=74.63  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=104.8

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHH
Q ss_conf             87289999766623----8---6999999999861899879999758----888888999------------99999999
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQ   91 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~   91 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+.+|++++.|||.=+    |.|++....            ..+.+.+.
T Consensus        11 ~~~ia~ItlnrP~~~Nal~~~m~~~l~~~~~~~~~d~~vrvvil~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (260)
T PRK07260         11 VDDLATLTLNRPEVSNGFNIPMCQEILEALALAKEDTSVRFLLINAVGKVFSVGGDLVEMKRAVAKDDVQSLVKIAELVN   90 (260)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999999737464689999999999999999976899179999789998889768888873225641678999999999


Q ss_pred             ----HH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             ----84-1478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   92 ----KV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        92 ----~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                          .+ +..||||+.+++.|..||..++++||-+++.+.+.++.       +.     -|+|+-+.         .+. 
T Consensus        91 ~~~~~~~~~~kPvIaav~G~a~GgG~~la~~~D~~ia~~~a~f~~-------pe-----~~~Gl~p~---------~g~-  148 (260)
T PRK07260         91 EISFAIKQLPKPVIMCVDGAVAGAAANIAVAADFCIASTKTKFIQ-------AF-----VGVGLAPD---------AGG-  148 (260)
T ss_pred             HHHHHHHHCCCCEEEEECCEECCCHHHHHHHHCCCCCCCCCEEEC-------CC-----CCCCCCCC---------CCH-
T ss_conf             999999848999899976854011758988605222356877955-------76-----68612888---------559-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                              ...           +...|-.+|     ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus       149 --------~~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~e~l~~~a~~~a  199 (260)
T PRK07260        149 --------LFL-----------LTRAIGLNR-----ATHLAMTGEGLTAEKALDYGIVYRVAESEKLEKTCLQLL  199 (260)
T ss_pred             --------HHH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             --------999-----------999975999-----999998199715999987797134558779999999999


No 71 
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.01  E-value=5.6e-09  Score=76.47  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=105.4

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH--------HH-HHHHH--
Q ss_conf             787289999766623-8------69999999998618998799997588----888889999--------99-99999--
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE--------AI-FRAIQ--   91 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~--------~i-~~ai~--   91 (293)
                      .+++|+.|.++-|=. +      .+++.+.++.+..|++|+.|||.=+.    .|++.....        .. ...+.  
T Consensus         5 ~~g~Va~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   84 (255)
T PRK06563          5 RRGHLLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPW   84 (255)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             88999999964887568999999999999999986399944999976898740565788874321253033566665399


Q ss_pred             --H-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             --8-4147867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   92 --K-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        92 --~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                        . ..-.||||+.+++.|..||.-++++||.+++.+.+.+|.-.+            ++|+-+.               
T Consensus        85 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ias~~a~f~~pe~------------~~Gi~p~---------------  137 (255)
T PRK06563         85 GTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAAENTRFAQLEV------------QRGILPF---------------  137 (255)
T ss_pred             HHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEECCCCCEEECCHH------------CCCCCCC---------------
T ss_conf             9876407999899985887608699998426423469983536201------------0561887---------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                       .. . ...           +...      +.... .+-+..|+.|++++|+++||||++...++..+.+.+.+
T Consensus       138 -~g-~-~~~-----------l~r~------iG~~~a~el~ltg~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a  191 (255)
T PRK06563        138 -GG-A-TLR-----------FPRA------AGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLDRAIELA  191 (255)
T ss_pred             -CC-H-HHH-----------HHHH------HCHHHHHHHHHCCCEECHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf             -40-9-999-----------9999------78999999875098645999997797006658118999999999


No 72 
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.01  E-value=1.5e-08  Score=73.83  Aligned_cols=161  Identities=19%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH-------------------
Q ss_conf             87289999766623----8---69999999998618998799997588----888889999-------------------
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE-------------------   84 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~-------------------   84 (293)
                      +++|+.|.++-|=.    +   .+++.+.++.+.+|++|++|||.=+.    .|++.....                   
T Consensus        10 ~~~va~itlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T PRK07509         10 EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPKNAVKLLFKRLPGNAN   89 (262)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999758877799899999999999999975899569999889984234667898843881046789886044568


Q ss_pred             HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             9999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r   85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE  163 (293)
Q Consensus        85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~  163 (293)
                      ........++ .+|||++.+++.|..||.-+|++||-.++.+++.++.-       .     -++|+-+.         .
T Consensus        90 ~~~~~~~~~~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~p-------e-----~~~Gl~p~---------~  148 (262)
T PRK07509         90 LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIM-------E-----AKWGLVPD---------M  148 (262)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECEEEECCCEEECCCCEEEECCCCEEECC-------C-----CCCCCCCC---------C
T ss_conf             9999999986099988999807688864021114655563698689565-------3-----04168988---------5


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHC
Q ss_conf             346667899998877777666667789999851499988998873498237889987798062389--899999999741
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALG  241 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~  241 (293)
                      +.       .  .           .+...|-.+|     ..+-+..|+.++|++|++.|||+++..  ++++.+.+.++.
T Consensus       149 g~-------~--~-----------~l~~~vG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~v~e~~~~~a~~~A~~i~  203 (262)
T PRK07509        149 AG-------T--V-----------SLRGLVRKDV-----ARELTYTARVFSAEEALELGLVTHVSDDPLAAAQALAREIA  203 (262)
T ss_pred             CH-------H--H-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHH
T ss_conf             59-------9--9-----------9999999999-----99999708957399998889950367107999999999998


No 73 
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.01  E-value=5.7e-09  Score=76.40  Aligned_cols=160  Identities=24%  Similarity=0.354  Sum_probs=103.2

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHH----
Q ss_conf             87289999766623-8------6999999999861899879999758----88888899--------------999----
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEA----   85 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~----   85 (293)
                      +++|+.|.++-|=. +      .+++.+.++.+.+|++|++|||.=+    |.|++...              .+.    
T Consensus        11 ~~~Va~ItLnRPe~~NAl~~~m~~el~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (293)
T PRK08260         11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDDVRAVIVTGAGRAFCAGADLSSGGNTFDLDGLVPRLEDDRADL   90 (293)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCEECCCCCCCCCHHHHCCCCHHHHHHH
T ss_conf             99999999748776789899999999999999964899069999889998665607622123233022112222355542


Q ss_pred             ----HH----HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEE
Q ss_conf             ----99----999984-147867996033233223210001110001301353455565302102456777420422553
Q gi|254780747|r   86 ----IF----RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK  156 (293)
Q Consensus        86 ----i~----~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~  156 (293)
                          ++    +...++ +..||||+.+++.|..||.-+|++||-+++.+.+.+|.-            .-++|+-+.   
T Consensus        91 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~~------------~~~~Gl~p~---  155 (293)
T PRK08260         91 SDPGVRDGGGRVTLRIFDCLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFV------------FGRRGIVPE---  155 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHCCCCCCCCCCCEEECC------------CCCCCCCCC---
T ss_conf             01777767779999998489988999889851265898760360010247887366------------656156877---


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             1552112346667899998877777666667789999851499988-998873498237889987798062389899999
Q gi|254780747|r  157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ  235 (293)
Q Consensus       157 ~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~  235 (293)
                            .+..         ..+.           ..|      ... ..+-+..|+.++|++|+++|||+++...++..+
T Consensus       156 ------~g~~---------~~L~-----------rlv------G~~~A~el~ltG~~i~A~eA~~~GlV~~vv~~~~l~~  203 (293)
T PRK08260        156 ------AASS---------WFLP-----------RLV------GISTALEWVYSGRVFDAQEALDGGLVRSVHPPDDLLD  203 (293)
T ss_pred             ------CCHH---------HHHH-----------HHH------CHHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHH
T ss_conf             ------5399---------9999-----------997------9999999997589466999987795456758178999


Q ss_pred             HHHHHC
Q ss_conf             999741
Q gi|254780747|r  236 SLYALG  241 (293)
Q Consensus       236 ~l~~~~  241 (293)
                      ...+.+
T Consensus       204 ~a~~~A  209 (293)
T PRK08260        204 AARALA  209 (293)
T ss_pred             HHHHHH
T ss_conf             999999


No 74 
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.00  E-value=7.9e-09  Score=75.52  Aligned_cols=161  Identities=22%  Similarity=0.239  Sum_probs=104.8

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------HHHH
Q ss_conf             87289999766623----8---69999999998618998799997588----888889999---------------9999
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------AIFR   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~i~~   88 (293)
                      +++|++|.++-+=.    +   ..++.+.++.+.+|+++++|||.=..    .|++.....               ...+
T Consensus        12 ~g~va~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   91 (263)
T PRK07799         12 RGHTLIVTMNRPEARNALSTEMLAIMVDAWDRVDNDPDIRSCILTGAGGYFCAGMDLKAATQKPPGDSFKDGSYDPSRID   91 (263)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHCCHHHHH
T ss_conf             89999999758887899899999999999999861999279999888982535866688750685124554110278999


Q ss_pred             HHHH-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             9998-414786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r   89 AIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF  167 (293)
Q Consensus        89 ai~~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~  167 (293)
                      .+.+ ....||+|+.+++.|..||.-++++||-+++.+.+.++.--+            ++|+-+.         .+   
T Consensus        92 ~~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~lGi~p~---------~g---  147 (263)
T PRK07799         92 ALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA------------KWSLYPM---------GG---  147 (263)
T ss_pred             HHHHHCCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCC------------EEECCCC---------CH---
T ss_conf             99986359998899985875568899988457666306654147424------------3611787---------13---


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             67899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                           . -..           +...|-..|     ..+-+..|+.+++++|+++|||+++...++..+++.+.+
T Consensus       148 -----~-~~~-----------l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A  199 (263)
T PRK07799        148 -----S-AVR-----------LVRQIPYTV-----ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEIA  199 (263)
T ss_pred             -----H-HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHH
T ss_conf             -----9-999-----------999864999-----999997189997999997798048718337999999999


No 75 
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.00  E-value=1.3e-08  Score=74.21  Aligned_cols=159  Identities=20%  Similarity=0.245  Sum_probs=104.6

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH--------------------
Q ss_conf             87289999766623-8------69999999998618998799997588----88888999--------------------
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG--------------------   83 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~--------------------   83 (293)
                      +++|+.|.++-|=. +      ..++.+.++.+..|++|+.|||.=+.    .|++....                    
T Consensus        17 ~~~Va~ItLNRP~~~NAls~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (308)
T PRK08272         17 TGRIARITLNRPEKGNAINADTPLELSAAVERADLDPGVHVILVSGAGRGFCAGYDLSAYAEGSSSAGGGGAYRGTVLDG   96 (308)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             99999999648675689999999999999999850999439999678997106848898841334333221000000013


Q ss_pred             ----------------------HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf             ----------------------9999999984-14786799603323322321000111000130135345556530210
Q gi|254780747|r   84 ----------------------EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY  140 (293)
Q Consensus        84 ----------------------~~i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~  140 (293)
                                            ....+.+..+ +..||||+.++++|..||..+|++||-+++.+++.+|.-       .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal~cD~~iaa~~A~fg~p-------~  169 (308)
T PRK08272         97 KTQAVNHLPDQPWDPMIDYQMMSRFVRGFMSLLHAHKPTVAKIHGYCVAGGTDIALHCDQVIAADDAKIGYP-------P  169 (308)
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCCEEECCCCEEECC-------C
T ss_conf             444311244221114678999999999999986399988999888656287999996780055488879775-------5


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf             24567774204225531552112346667899998877777666667789999851499988998873498237889987
Q gi|254780747|r  141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK  220 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~  220 (293)
                      .     ++|.              -|   .+  .          .   +...|    |.. ...+-+..|+.++|++|++
T Consensus       170 ~-----~~gg--------------~p---~~--~----------~---~~~~v----G~~-~A~el~ltg~~i~A~eA~~  207 (308)
T PRK08272        170 T-----RVWG--------------VP---AA--G----------M---WAHRL----GDQ-RAKRLLFTGDCITGAQAAE  207 (308)
T ss_pred             H-----HHCE--------------EC---CH--H----------H---HHHHH----CHH-HHHHHHHHCCCCCHHHHHH
T ss_conf             6-----4372--------------46---21--2----------8---89883----699-9999987189678999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             7980623898999999997418
Q gi|254780747|r  221 VGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       221 ~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                      +|||+++-..++..+++.+.+.
T Consensus       208 ~GLvn~vvp~~eL~~~a~~lA~  229 (308)
T PRK08272        208 WGLAVEAPPPEDLDERTERLVE  229 (308)
T ss_pred             CCCCCEECCHHHHHHHHHHHHH
T ss_conf             6984355188899999999999


No 76 
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.00  E-value=6.3e-09  Score=76.15  Aligned_cols=164  Identities=19%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             CCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH--------------HHHH
Q ss_conf             7787289999766623----8---69999999998618998799997588----88888999--------------9999
Q gi|254780747|r   33 DNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG--------------EAIF   87 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~--------------~~i~   87 (293)
                      ..++.|+.|.++-+=.    +   .+++.+.++.+.+|+++++|||+=+.    .|++....              .++.
T Consensus        17 ~~~~GVa~itlnrP~~~Nals~~m~~~l~~a~~~~~~d~~vrvvvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   96 (271)
T PRK07327         17 RHPPGVLEIVLNRPEGLNAADARMHRELADIWRDVDRDPDVRVVVIRGEGKAFSAGGDLALVEEMAGDFEVRARVWREAR   96 (271)
T ss_pred             EECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             80895899998289877898999999999999999768991699997899865567564777631578788999999999


Q ss_pred             HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             999984-1478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.+..+ ...||||+.+++.|..+|.-++++||-+++.+.+.++.-.            -|+|+.+.             
T Consensus        97 ~~~~~~~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~p~-------------  151 (271)
T PRK07327         97 DLVYNVINCSKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGH------------TRLGVAAG-------------  151 (271)
T ss_pred             HHHHHHHHCCCCEEEEEECEEECCCCHHHHHCCEEEECCCCEEECCC------------CCEEECCC-------------
T ss_conf             99999997899889998033304550877636843684898587651------------30605777-------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             6678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                         ....  ..+           -..|-.+|     ..+-+..|+.++|++|+++|||+++...++..+.+.+++.
T Consensus       152 ---~~~~--~~l-----------~~~vG~~~-----A~ellltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~lA~  206 (271)
T PRK07327        152 ---DHAA--IVW-----------PLLCGMAK-----AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAE  206 (271)
T ss_pred             ---CCHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             ---4178--889-----------98731999-----9999987798679999987992288687789999999999


No 77 
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.00  E-value=1.1e-08  Score=74.53  Aligned_cols=159  Identities=17%  Similarity=0.285  Sum_probs=104.4

Q ss_pred             CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------------
Q ss_conf             872899997666238-------69999999998618998799997588----8888899---------------------
Q gi|254780747|r   35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------------   82 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------------   82 (293)
                      ++.|+.|.++-|=.-       .+++.+.++.+.+|++|+.|||.=..    -|++...                     
T Consensus        11 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~   90 (284)
T PRK08290         11 DDGIARITLNRPEARNAQNRGMLYELDAAFTRAEADDAVRVIVLAGAGKHFSAGHDLGSPGRERRPGPDHPTLWWNGATK   90 (284)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCHHHHHCCCCH
T ss_conf             99999999847264689999999999999999964979179999669996254716153553124564310233201102


Q ss_pred             --HHHHH--------HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             --99999--------9999841-478679960332332232100011100013013534555653021024567774204
Q gi|254780747|r   83 --GEAIF--------RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS  151 (293)
Q Consensus        83 --~~~i~--------~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~  151 (293)
                        .+...        ...++++ ..||||+.+.+.|..||..++++||-+++.+.+.++.-            .-++|+.
T Consensus        91 ~~~~~~~~~e~~~~l~~~~~i~~~~KPvIAaV~G~a~GgG~~lalacDi~iAse~A~F~~p------------~~~lGl~  158 (284)
T PRK08290         91 PGVEFRYAREWEYYLGYCRRWRDLPKPTIAQVQGACIAGGLMLAWPCDLIVASDDAFFSDP------------VVRMGIP  158 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECC------------CCCCCCC
T ss_conf             4578888898999999999985299988999868752120687853778997399899775------------3054514


Q ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             225531552112346667899998877777666667789999851499988-9988734982378899877980623898
Q gi|254780747|r  152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                            |     .           +.+   .. -|     .|      -.. ..+-++.|+.++|++|+++|||+++...
T Consensus       159 ------g-----~-----------~~~---~~-p~-----~l------G~~rA~ellltg~~i~A~eA~~~GLVn~Vvp~  201 (284)
T PRK08290        159 ------G-----V-----------EYF---AH-PW-----EL------GPRKAKELLFTGDRLSADEAHRLGMVNRVVPR  201 (284)
T ss_pred             ------C-----H-----------HHH---HH-HH-----HH------HHHHHHHHHHHCCCCCHHHHHHCCCCCEECCH
T ss_conf             ------2-----3-----------577---88-88-----86------09999999982997579999976980334288


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999997418
Q gi|254780747|r  231 EEVWQSLYALGV  242 (293)
Q Consensus       231 ~~a~~~l~~~~~  242 (293)
                      ++..++..+++.
T Consensus       202 ~~L~~~a~~lA~  213 (284)
T PRK08290        202 DELEAATLELAR  213 (284)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 78 
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.99  E-value=1e-08  Score=74.74  Aligned_cols=159  Identities=17%  Similarity=0.230  Sum_probs=104.7

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC------CCCCCHHH-----------HHHHHHHH
Q ss_conf             87289999766623-8------6999999999861899879999758------88888899-----------99999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS------SPGGSAYA-----------GEAIFRAI   90 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~------SpGG~~~~-----------~~~i~~ai   90 (293)
                      .++|+.|.++-|=. +      .+++.+.++.+.+ ++++.+||.-.      |-|++...           .+.+.+.+
T Consensus        11 ~d~Va~itlnrP~~~Nal~~~m~~~l~~al~~~~~-~~~r~vvl~~~~g~~~F~AG~Dl~e~~~~~~~~~~~~~~~~~~~   89 (261)
T PRK11423         11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNR-PEIRVVILRAPSGSKVWSAGHDIHELPAGGRDPLSYDDPLRQIL   89 (261)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999748687799899999999999999857-99879999658887542378665453225766677877999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      ..+. ..|||++.+++.|..||..+|++||-+++.+.+.++.--            -++|+.+.                
T Consensus        90 ~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~~~----------------  141 (261)
T PRK11423         90 RMIQKFPKPVIAMVEGSVWGGAFDLVMSCDLIIAASTSTFAMTP------------ANLGVPYN----------------  141 (261)
T ss_pred             HHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEECCC------------HHCCCCCC----------------
T ss_conf             99994899899996773321408999987542101162695762------------00277768----------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             89999887777766666778999985149998899-8873498237889987798062389899999999741
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      ...             ...+...      +..... +-+..|+.++|++|+++|||+++...+++.+...+++
T Consensus       142 ~~~-------------~~~l~~~------iG~~~A~ellltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la  195 (261)
T PRK11423        142 LSG-------------ILNFTND------AGIHIVKEMFFTASPITAERALAVGILNHLVEVEELEDFTLQMA  195 (261)
T ss_pred             CCH-------------HHHHHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf             538-------------9999999------76999999886289673999998798407548579999999999


No 79 
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.99  E-value=2.8e-08  Score=72.10  Aligned_cols=156  Identities=16%  Similarity=0.226  Sum_probs=105.4

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH
Q ss_conf             787289999766623-8------69999999998618998799997588----88888999---------------9999
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF   87 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~   87 (293)
                      ..+.|+.|.++.|=. +      .+++.+.++.+.+|+++++|||.=..    .|++....               ..+.
T Consensus        11 d~~GVa~itlnrP~~~NAl~~~m~~el~~a~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T PRK07468         11 DARGVATLTLNRPEKHNALSARMIAELTTAALRLAADAAVRVVVLTGAGKSFCAGGDLGWMREQMNADRATRIEEARKLA   90 (262)
T ss_pred             ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             18988999982888779989999999999999986589916999978998604788778776411367667778887999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      ..++.++ .+||||+.+++.|..||.-++++||-+++.+.+.++.-.            -++|+-+.         .+  
T Consensus        91 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~~--  147 (262)
T PRK07468         91 LMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIGVSGARFGLTE------------TRLGLIPA---------TI--  147 (262)
T ss_pred             HHHHHHHHCCCCEEEEECCEEEECCCEEECCCCEEEECCCCCCCCHH------------HHCCCCCC---------CC--
T ss_conf             99999984899899997476755554020457678973787544475------------30556778---------43--


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             667899998877777666667789999851499988-99887349823788998779806238989999999
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL  237 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l  237 (293)
                                         ...++..|      ... ..+-+..|+.++|++|+++|||+++...++.....
T Consensus       148 -------------------~~~~l~ri------G~~~A~ellltg~~i~a~eA~~~GlV~~vv~~~~l~~~~  194 (262)
T PRK07468        148 -------------------GPYVVARM------GEANARRVFMSARLFDAEEAVRLGLLARVVPAERLDAAV  194 (262)
T ss_pred             -------------------HHHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHH
T ss_conf             -------------------88999886------299999998508825799999769871652887999999


No 80 
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.99  E-value=1.6e-08  Score=73.59  Aligned_cols=160  Identities=21%  Similarity=0.283  Sum_probs=104.9

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH----------HHHHH----
Q ss_conf             87289999766623----8---69999999998618998799997588-----88888999----------99999----
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG----------EAIFR----   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~----------~~i~~----   88 (293)
                      ++.|++|.++-|=.    +   .+++.+.++.+.+|++++.|||.=..     -|++....          ....+    
T Consensus        18 ~~~V~~itlnrP~~~Nals~~~~~~l~~~l~~~~~d~~vr~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   97 (269)
T PRK06127         18 TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEA   97 (269)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             89999999748875689899999999999999863899159999689977413686457775224786788999999999


Q ss_pred             HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             99984-14786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r   89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF  167 (293)
Q Consensus        89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~  167 (293)
                      .+..+ ...||+|+.+++.|..||..++++||-+++.+.+.++.       |     .-++|+-+.              
T Consensus        98 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p-----e~~~Gl~p~--------------  151 (269)
T PRK06127         98 AQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGI-------P-----AARLGLGYG--------------  151 (269)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEEECCCCEEEC-------C-----HHHCCCCCC--------------
T ss_conf             99999958998999976812026413320676677569957979-------3-----164096889--------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             67899998877777666667789999851499988998-873498237889987798062389899999999741
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                        ...  -..           +..      .+...... -+..|+.|+|++|+++|||+++-..++..+.+.+++
T Consensus       152 --~g~--~~~-----------l~~------~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la  205 (269)
T PRK06127        152 --YDG--VKN-----------LVD------LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYA  205 (269)
T ss_pred             --CCH--HHH-----------HHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             --539--999-----------998------868899999987479888999998899247508769999999999


No 81 
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.99  E-value=1e-08  Score=74.84  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=101.4

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----------------HHHH
Q ss_conf             87289999766623-8------69999999998618998799997588----8888899-----------------9999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----------------GEAI   86 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----------------~~~i   86 (293)
                      +++|+.|.++-+=. +      .+++.+.++.+.+|++|+.|||.=..    .|++...                 ...+
T Consensus        12 ~~~Va~ItLNRPe~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~p~~~~   91 (298)
T PRK12478         12 AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDF   91 (298)
T ss_pred             ECCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             99999999718401279999999999999999820899539999789987025635422565543553103566741237


Q ss_pred             ----------HHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf             ----------9999984-14786799603323322321000111000130135345556530210245677742042255
Q gi|254780747|r   87 ----------FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV  155 (293)
Q Consensus        87 ----------~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~  155 (293)
                                .+.+..+ +..||||+.++++|..||.-+|++||-+++.+++.+|.-.+       +     +|      
T Consensus        92 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~Lal~cDi~iAs~~A~f~~p~~-------~-----lg------  153 (298)
T PRK12478         92 AMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASEDAVIGTPYS-------R-----MW------  153 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC-------C-----CC------
T ss_conf             88988863068999999818998899987987367789998679478538878866620-------1-----27------


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf             3155211234666789999887777766666778999985149998899-887349823788998779806238989999
Q gi|254780747|r  156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW  234 (293)
Q Consensus       156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~  234 (293)
                        |.      +   .+.            .   ++..+    +  .... .-+..|+.++|++|+++|||+++...++..
T Consensus       154 --g~------~---~~~------------~---~~~rl----g--~~~a~~l~ltg~~i~A~eA~~~GLVn~VVp~eeL~  201 (298)
T PRK12478        154 --GA------Y---LTG------------M---WLYRL----S--LAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLE  201 (298)
T ss_pred             --CC------C---HHH------------H---HHHHH----H--HHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHH
T ss_conf             --65------4---147------------9---99976----8--99999999719965499999859604452888999


Q ss_pred             HHHHHHC
Q ss_conf             9999741
Q gi|254780747|r  235 QSLYALG  241 (293)
Q Consensus       235 ~~l~~~~  241 (293)
                      +...+.+
T Consensus       202 ~~a~~~A  208 (298)
T PRK12478        202 ARVAEVA  208 (298)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 82 
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.96  E-value=1.6e-08  Score=73.56  Aligned_cols=160  Identities=24%  Similarity=0.316  Sum_probs=102.4

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHH----
Q ss_conf             87289999766623----8---69999999998618998799997588----8888899------------99999----
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIF----   87 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~----   87 (293)
                      ++.|+.|.++-|=.    +   .+++.+.++.+. |+++++|||.=..    .|++...            .+.+.    
T Consensus        11 ~~~Va~ItlnrP~~~NAl~~~m~~el~~al~~~~-d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T PRK08140         11 EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIERFYN   89 (262)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999976877668999999999999999856-789708999788986006665686610545673468999999999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      ..++.+. ..||+|+.+++.|..||.-+|++||-+++.+.+.++.       ++     -++|+-+.         .+. 
T Consensus        90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~-------p~-----~~lGl~p~---------~gg-  147 (262)
T PRK08140         90 PLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQ-------AF-----VKIGLVPD---------SGG-  147 (262)
T ss_pred             HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEEECCCCEECC-------CC-----CCEEECCC---------CCH-
T ss_conf             999999958998899987976410579987355433036750305-------65-----54651488---------669-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                            .  ..+           ...|-..|     ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus       148 ------~--~~l-----------~r~vG~~~-----A~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~lA  198 (262)
T PRK08140        148 ------T--WFL-----------PRLVGMAR-----ALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEARQLA  198 (262)
T ss_pred             ------H--HHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf             ------9--999-----------99987999-----999998399877067997898578748679999999999


No 83 
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.95  E-value=2.4e-08  Score=72.49  Aligned_cols=149  Identities=21%  Similarity=0.299  Sum_probs=97.0

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HH----HHHHH
Q ss_conf             787289999766623-8------69999999998618998799997588----8888899---------99----99999
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GE----AIFRA   89 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~----~i~~a   89 (293)
                      .+++|+.|.++-|=. +      .+++.+.++.+. |+.++.|||.=+.    .|++...         ..    .+.+.
T Consensus        12 ~~~~Va~itlnrP~~~Nal~~~m~~~l~~~l~~~~-d~~~r~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (260)
T PRK07659         12 YEGHVATIMLNRPEALNALDEPMLKELLEALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDRVMNTISEI   90 (260)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999974888889989999999999999975-79986999975798438886768875357867899999999999


Q ss_pred             HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r   90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus        90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      +..+. .+||+|+.+++.|..||..+|++||-+++.+.+.++.-.            -++|+-+.         .+.   
T Consensus        91 ~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~---  146 (260)
T PRK07659         91 VVTLYTMPKLVISAIHGPAAGLGLSLALTADYVMADISAKLAMNF------------IGIGLIPD---------GGG---  146 (260)
T ss_pred             HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCCCCCCCCEECCC------------CCEEECCC---------CCH---
T ss_conf             999996899899996370664134998742745556776351663------------65665778---------639---


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC
Q ss_conf             7899998877777666667789999851499988998873498237889987798062389
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG  229 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~  229 (293)
                          .  ..           +-..|-.+|     ..+-+..|+.|++++|+++|||+++..
T Consensus       147 ----~--~~-----------l~r~iG~~~-----a~ellltg~~~~A~eA~~~GlV~~vvp  185 (260)
T PRK07659        147 ----H--FF-----------LQKRVGENK-----AKQIIWEGKKLSATEALDLGLIDEVFG  185 (260)
T ss_pred             ----H--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECC
T ss_conf             ----9--99-----------999983999-----999998299756999987797234439


No 84 
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.95  E-value=1.9e-08  Score=73.09  Aligned_cols=161  Identities=22%  Similarity=0.291  Sum_probs=105.3

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHH------HHH---HHHHHC
Q ss_conf             87289999766623-8------6999999999861899879999758----88888899999------999---999841
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEA------IFR---AIQKVK   94 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~------i~~---ai~~~k   94 (293)
                      .+.|+.|.++-|=. +      .+++.+.++++..|+.++.|||.=.    |.|++......      ..+   .+....
T Consensus        10 ~~~ia~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vrvvvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (254)
T PRK08252         10 RGRVLIITINRPEARNAVNLAVAQGLAAALDQLDADDDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFAGLTERP   89 (254)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999758998899899999999999999973999179999889973555536787863897431132579999705


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf             47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r   95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA  174 (293)
Q Consensus        95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~  174 (293)
                      ..|||++.+++.|..||.-++++||-+++.+.+.++.--       .     ++|+-+.         .+         .
T Consensus        90 ~~kPvIaav~G~a~GgG~~la~~~D~~ias~~a~f~~pe-------~-----~~Gl~p~---------~g---------~  139 (254)
T PRK08252         90 PRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPE-------V-----KRGLVAA---------GG---------G  139 (254)
T ss_pred             CCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCC-------C-----EECCCCC---------CH---------H
T ss_conf             799889998787761759999747899852444212760-------1-----1476888---------33---------9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             887777766666778999985149998899-88734982378899877980623898999999997418
Q gi|254780747|r  175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                      -..           +...      +..... +-+..|+.|++++|+++||||++...++..+.+.+.+.
T Consensus       140 ~~~-----------l~~~------~G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  191 (254)
T PRK08252        140 LLR-----------LPRR------IPYHIAMELALTGDMLPAERAHALGLVNRLTEPGQALDAALELAE  191 (254)
T ss_pred             HHH-----------HHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH
T ss_conf             999-----------9999------629999999967898779999988981586280389999999999


No 85 
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.94  E-value=1.6e-08  Score=73.55  Aligned_cols=161  Identities=19%  Similarity=0.238  Sum_probs=106.8

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH------HHH----HH-HHH
Q ss_conf             87289999766623-8------69999999998618998799997588----888889999------999----99-998
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE------AIF----RA-IQK   92 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~------~i~----~a-i~~   92 (293)
                      ++.|+.|.++-|=. +      .+++.+.++.+.+|+.++.|||.=+.    .|++.....      ...    .. ...
T Consensus        10 ~g~Va~ItLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (254)
T PRK08259         10 NGPVTTVIINRPEARNAVDGPTAAALAAAFRAFDADDAASVAVLTGAGGTFCAGADLKAVATPRANRVHRSGPGPMGPSR   89 (254)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf             89999999858365799899999999999999860999349999779872645668666505553200111210567999


Q ss_pred             HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             41478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r   93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP  172 (293)
Q Consensus        93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~  172 (293)
                      .+..||||+.+++.|..||.-++++||-+++.+.+.+|.--            -++|+....         +.     + 
T Consensus        90 ~~~~kPvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~~~------------~~~Gl~~~~---------gg-----t-  142 (254)
T PRK08259         90 MRLSKPVIAAISGYAVAGGLELALWCDLRVAEEDAVFGVFC------------RRWGVPLID---------GG-----T-  142 (254)
T ss_pred             HHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HHCCCCCCC---------CC-----C-
T ss_conf             85899889997788655744664415666855896897702------------640878676---------54-----2-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             998877777666667789999851499988-9988734982378899877980623898999999997418
Q gi|254780747|r  173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                                   | .+...|      -.. ..+-+..|+.+++++|+++|||+++...++..+++.+++.
T Consensus       143 -------------~-~L~r~v------G~~~A~ellltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~lA~  193 (254)
T PRK08259        143 -------------V-RLPRLI------GHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAA  193 (254)
T ss_pred             -------------H-HHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             -------------0-167774------89999999985883269999986996178785789999999999


No 86 
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.93  E-value=2.9e-08  Score=72.01  Aligned_cols=162  Identities=18%  Similarity=0.311  Sum_probs=104.1

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHH-------H
Q ss_conf             87289999766623----8---69999999998618998799997588----8888899---------9999-------9
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAI-------F   87 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i-------~   87 (293)
                      +++|+.|.++-+=.    +   .+++.+.++.+.+|+++++|||.=..    .|++...         ..++       .
T Consensus        17 ~~~Ia~Itlnrp~~~NAls~~m~~el~~~~~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (270)
T PRK08258         17 DGGVATITLNRPERKNPLTFDSYAELRDLFRALVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLDFTRMTG   96 (270)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCHHCCCCHHHHHHHHHHHH
T ss_conf             99999999747332589999999999999998855899549999679986506658787734001378688899999999


Q ss_pred             HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +.++.++ ..||+|+.+++.|..||.-++++||-+++.+++.++..            .-++|+-.             +
T Consensus        97 ~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~p------------~~~iGl~~-------------~  151 (270)
T PRK08258         97 DLVKAMRACPQPVIAAVDGVCAGAGAILAMASDLRLATPSAKTAFL------------FTRVGLAG-------------A  151 (270)
T ss_pred             HHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCCCEECCC------------CCEEEECC-------------C
T ss_conf             9999998589998999878754676999985262414666612166------------55251157-------------7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                        ++...  ..+           -..|-.+|     ..+-++.|+.++|++|.+.|||+++...+++...+.+.+
T Consensus       152 --~~g~~--~~l-----------~r~vG~~~-----a~~llltG~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A  206 (270)
T PRK08258        152 --DMGAC--ALL-----------PRIIGQGR-----ASELLYTGRSMSAEEGERWGFFNRLVEPAALLAEAQALA  206 (270)
T ss_pred             --CCHHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf             --72178--688-----------88855999-----998787289685999998698306518789999999999


No 87 
>PRK08321 naphthoate synthase; Validated
Probab=98.92  E-value=2.3e-08  Score=72.56  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=101.3

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----------CCCCHHH--------------
Q ss_conf             87289999766623----8---69999999998618998799997588-----------8888899--------------
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----------PGGSAYA--------------   82 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----------pGG~~~~--------------   82 (293)
                      ++.|+.|.+|-|=.    +   .+++.+.++.+.+|++|+.|||.=+.           .|++...              
T Consensus        32 ddGVa~ItLNRPek~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~~~~~gRaFcAG~Dl~~~~~~~~~~~~~~~~  111 (302)
T PRK08321         32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARQSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYEGGETA  111 (302)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCHHHHCCCCHHHCCCCCC
T ss_conf             08589999758344589889999999999999875899549999699887666656143267645412221000134332


Q ss_pred             -------HH--HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             -------99--9999999841-47867996033233223210001110001301-3534555653021024567774204
Q gi|254780747|r   83 -------GE--AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAET-SLVGSIGVLFQYPYVKPFLDKLGVS  151 (293)
Q Consensus        83 -------~~--~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~-s~vGsiGv~~~~~~~~~ll~k~gi~  151 (293)
                             ..  .+.+..+.++ ..||||+.+++.|..||.-+|++||-+++.+. +.++..-            -++|+-
T Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~~ias~~~a~f~~~~------------~~~G~~  179 (302)
T PRK08321        112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTD------------ADVGSF  179 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCHHHHHHCCCEEECCC------------CCEECC
T ss_conf             32015566567799999999629999999986804237499999603155511263752454------------566214


Q ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             22553155211234666789999887777766666778999985149998899-88734982378899877980623898
Q gi|254780747|r  152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      ..        ..+.+          .           +..      -+-.... +-+..|+.++|++|+++|||+++...
T Consensus       180 ~~--------~~g~~----------~-----------L~r------~iG~~~A~ellltG~~i~A~eA~~~GLv~~vv~~  224 (302)
T PRK08321        180 DG--------GYGSA----------Y-----------LAR------QVGQKFAREIFFLGRTYSAEEAFQMGAVNAVVPH  224 (302)
T ss_pred             CC--------CCCCC----------C-----------CHH------HCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCH
T ss_conf             67--------55443----------4-----------025------5069999999832856449999987984144385


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999741
Q gi|254780747|r  231 EEVWQSLYALG  241 (293)
Q Consensus       231 ~~a~~~l~~~~  241 (293)
                      ++..++..+.+
T Consensus       225 ~~l~~~a~~~A  235 (302)
T PRK08321        225 AELETEALEWA  235 (302)
T ss_pred             HHHHHHHHHHH
T ss_conf             78999999999


No 88 
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.87  E-value=4.8e-08  Score=70.60  Aligned_cols=159  Identities=21%  Similarity=0.314  Sum_probs=102.6

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHHHHHHH
Q ss_conf             87289999766623-8------69999999998618998799997588----88888999------------99999999
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAIFRAIQ   91 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i~~ai~   91 (293)
                      ++.|+.|.++-|-. +      .+++.+.++++.  +.++.|||+-..    .|++....            ..+.+.+.
T Consensus        18 ~~~va~itlnrP~~~NAl~~~m~~eL~~~~~~~~--~dvrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   95 (264)
T PRK08150         18 DGDVATIGLNRPAKRNALNDGLIEALRDAFARLP--EEARAVVLHGEGDHFCAGLDLSELRERDATEGMRHSQRWHRVFD   95 (264)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9999999974888689989999999999998524--48858999877986003345798751682367888889999999


Q ss_pred             HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf             841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r   92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV  170 (293)
Q Consensus        92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~  170 (293)
                      .+. ..|||++.+++.|..||..++++||-+++.+++.++.-.            -++|+-+.                +
T Consensus        96 ~i~~~~~PvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe------------~~~Gl~p~----------------~  147 (264)
T PRK08150         96 KIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPE------------GQRGIFVG----------------G  147 (264)
T ss_pred             HHHHCCCCEEEEECCEEEEEEEEEECCCEEEECCCCCEEECHH------------CCCCCCCC----------------C
T ss_conf             9982899889997268987024310230455415786771611------------13376888----------------5


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      .-.  ..           +...|-..|     ..+-+..|+.++|++|+++|||+++...+++.++..+.+
T Consensus       148 g~~--~~-----------l~r~vG~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la  200 (264)
T PRK08150        148 GGS--VR-----------IPRLIGVAR-----MTDMMLTGRVYSAQEGVRLGLAQYLVPAGEALDKALELA  200 (264)
T ss_pred             CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf             299--99-----------999970999-----999998399516999998699738738008999999999


No 89 
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.87  E-value=6.5e-08  Score=69.74  Aligned_cols=149  Identities=19%  Similarity=0.251  Sum_probs=100.0

Q ss_pred             CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH---------HHHHHHHHHHH-C
Q ss_conf             872899997666238------6999999999861899879999758----88888899---------99999999984-1
Q gi|254780747|r   35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA---------GEAIFRAIQKV-K   94 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~---------~~~i~~ai~~~-k   94 (293)
                      +++|+.|.++-|=.+      .+++.+.++.+.+|+.+++|||.=+    |.|++...         ...++..+..+ .
T Consensus         8 ~g~v~~I~LnRPk~Na~~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   87 (251)
T TIGR03189         8 DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLD   87 (251)
T ss_pred             ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999588887999999999999999999649792799996879877577664552951589999999999999996


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf             47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r   95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA  174 (293)
Q Consensus        95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~  174 (293)
                      ..|||++.+++.|..||.-++++||-+++.+.+.+|.--            -++|+-.                 ..  .
T Consensus        88 ~~~PvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~~-----------------~~--~  136 (251)
T TIGR03189        88 SPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPE------------IVLGVFA-----------------PA--A  136 (251)
T ss_pred             CCCCEEEEEEEEEECCHHHHHHHCCCCEECCCCCCCCCC------------CEEEECC-----------------CC--H
T ss_conf             899889998227862207889866745234764334840------------0261068-----------------81--8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf             8877777666667789999851499988998-87349823788998779806238989
Q gi|254780747|r  175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~  231 (293)
                      -           ..+...|      ...... -+..|+.++|++|.++|||+++..-.
T Consensus       137 ~-----------~~l~~~i------G~~~a~~l~ltG~~i~A~eA~~~GlVn~v~~d~  177 (251)
T TIGR03189       137 S-----------CLLPERM------GRVAAEDLLYSGRSIDGAEGARIGLANAVAEDP  177 (251)
T ss_pred             H-----------HHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCHHCCCCH
T ss_conf             9-----------9999998------699999998208826699999769836005978


No 90 
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.85  E-value=1.4e-07  Score=67.64  Aligned_cols=156  Identities=19%  Similarity=0.258  Sum_probs=101.2

Q ss_pred             CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-------------HHHHHHHH
Q ss_conf             87289999766623----8---6999999999861899879999758----88888899-------------99999999
Q gi|254780747|r   35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-------------GEAIFRAI   90 (293)
Q Consensus        35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-------------~~~i~~ai   90 (293)
                      +++|+.|.++-|=.    +   .+++.+.++.+..|++++.|||.=.    |.|++...             .+.+.+.+
T Consensus        10 ~~~Va~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvivltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK07827         10 DGGVARLTLDSPHNRNALSTALVSQLHDGLTDAAADPGVRAVVLTHTGGTFCAGADLSEAGGGDPYDMAVDRAREMTALL   89 (255)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999717875799899999999999999975899559999779987447886054323781445788899999999


Q ss_pred             HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      +.+. .+||+|+.+++.|..||.-++++||-.++.+++.+|.--            -++|+-+.         .+.    
T Consensus        90 ~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~lGl~p~---------~g~----  144 (255)
T PRK07827         90 RAIVELPKPVIAAIDGHVRAGGLGLVGACDIAVAGPGSTFALTE------------ARIGVAPA---------IIS----  144 (255)
T ss_pred             HHHHHCCCCEEEEECCEEEECCHHHHHCCCEEECCCCCEEECCC------------CCCCCCCC---------CCH----
T ss_conf             99996899889997786763404665516554148998550500------------15625887---------539----


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH
Q ss_conf             899998877777666667789999851499988998873498237889987798062389-89999999
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL  237 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l  237 (293)
                                       ..++..+-..+     ..+-+..|+.|++++|+++|||+.+.. .++....+
T Consensus       145 -----------------~~~l~rlg~~~-----a~~l~ltg~~~~a~eA~~~Glv~~~~e~l~~~~~~~  191 (255)
T PRK07827        145 -----------------LTLLPKLSPRA-----AARYYLTGEKFGAAEAARIGLVTVAADDVDAAVAAL  191 (255)
T ss_pred             -----------------HHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHH
T ss_conf             -----------------99999999999-----998861088278999998799245665599999999


No 91 
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.84  E-value=1.1e-07  Score=68.30  Aligned_cols=159  Identities=23%  Similarity=0.255  Sum_probs=104.2

Q ss_pred             CEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH-------------HHHHHHH
Q ss_conf             72899997666238-------69999999998618998799997588----888889999-------------9999999
Q gi|254780747|r   36 PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE-------------AIFRAIQ   91 (293)
Q Consensus        36 ~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~-------------~i~~ai~   91 (293)
                      +.|+.|.++-+-..       .+++.+.++.+..|+.++.|+|.=+.    -|++.....             ..++.+.
T Consensus        13 ~~v~~itl~rp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltG~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   92 (257)
T COG1024          13 DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLR   92 (257)
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             88899997067623588999999999999999629981699998189716717498877422310468888878899999


Q ss_pred             HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf             841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r   92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV  170 (293)
Q Consensus        92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~  170 (293)
                      .++ ..||||+.+.+.|..||.-++.+||.+++.+.+.+|...+.            +|+-+.                .
T Consensus        93 ~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~------------iGl~pg----------------~  144 (257)
T COG1024          93 ALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVN------------LGLLPG----------------D  144 (257)
T ss_pred             HHHHCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCCC----------------C
T ss_conf             998589999998365014678899870887983477788554134------------265878----------------4


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHC
Q ss_conf             99998877777666667789999851499988998-8734982378899877980623898-99999999741
Q gi|254780747|r  171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALG  241 (293)
Q Consensus       171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~  241 (293)
                        .....+.                 |-+...... -+..|+.+++++|+++||||++... ++..+.+.+..
T Consensus       145 --g~~~~l~-----------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a  198 (257)
T COG1024         145 --GGTQRLP-----------------RLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELA  198 (257)
T ss_pred             --CHHHHHH-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHH
T ss_conf             --5889999-----------------97396889999982898889999978991466587688999999999


No 92 
>KOG1680 consensus
Probab=98.84  E-value=3.1e-08  Score=71.77  Aligned_cols=160  Identities=23%  Similarity=0.331  Sum_probs=105.8

Q ss_pred             CCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHH-------------HHHH
Q ss_conf             787289999766623-------869999999998618998799997588----8888899999-------------9999
Q gi|254780747|r   34 NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSS----PGGSAYAGEA-------------IFRA   89 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~~-------------i~~a   89 (293)
                      .+.+|++|.|+-|=.       -..++.+++....+|+.++.+||.=..    .|.+......             ..+.
T Consensus        43 ~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~  122 (290)
T KOG1680          43 EDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDL  122 (290)
T ss_pred             CCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             47876899837867752115899999999999740467654799976887523643789875211234454430012566


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             99841478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r   90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus        90 i~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      +.  +-+||||+.+.++|-.||.-+|+.||=+||.|++.+|...-.            +|+-+                 
T Consensus       123 ~~--~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~------------~Gi~p-----------------  171 (290)
T KOG1680         123 VS--RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIR------------MGIIP-----------------  171 (290)
T ss_pred             HH--HCCCCEEEEEECEEECCCHHHHHHCCEEECCCCCEECCCCCC------------CCCCC-----------------
T ss_conf             65--246551375503664361222353134752677752464431------------27764-----------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                       +.-..+.+.           ..|-.+|     .++-+..|+.+++++|++.|||++|-..++++.++.+++
T Consensus       172 -~~GGT~rl~-----------r~vG~s~-----Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~  226 (290)
T KOG1680         172 -SWGGTQRLP-----------RIVGKSR-----ALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLA  226 (290)
T ss_pred             -CCCCHHHHH-----------HHHCHHH-----HHHHHHHCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf             -777210688-----------7857678-----999997168364778875785247524306799999999


No 93 
>pfam00378 ECH Enoyl-CoA hydratase/isomerase family. This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase.
Probab=98.74  E-value=1.1e-07  Score=68.21  Aligned_cols=131  Identities=27%  Similarity=0.344  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHHHHC-CCCCEEEEECCCCCCCCCC
Q ss_conf             999999999861899879999758----888888999------------99999999841-4786799603323322321
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQKVK-NRKPVITEVHEMAASAGYL  113 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~  113 (293)
                      +++.+.++++.+|++++.|+|+=+    |.|++....            +.+.+...+++ .+||+++.+++.|..+|..
T Consensus        20 ~~l~~~~~~~~~d~~i~vvil~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIa~v~G~a~GgG~~   99 (169)
T pfam00378        20 TELIQALEKLEQDPSVRAVVLTGAPGAFSAGADIKEMAAKRPAQQAQFSLEALDLWSRLEDLPKPVIAAVNGYALGGGLE   99 (169)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHH
T ss_conf             99999999998689945999978996422588889986168377889999999999999968998999966836504608


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00011100013013534555653021024567774204225531552112346667899998877777666667789999
Q gi|254780747|r  114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV  193 (293)
Q Consensus       114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V  193 (293)
                      ++++||.+++.+.+.++.-.+            ++|+-+.                ..  .-..+           ..  
T Consensus       100 la~~~D~~va~~~a~f~~pe~------------~~Gl~p~----------------~~--~~~~l-----------~~--  136 (169)
T pfam00378       100 LALACDYRIAADNAKFGLPET------------KLGIIPG----------------AG--GTQRL-----------PR--  136 (169)
T ss_pred             HHHHCCCHHHCCCCEEECCCC------------CCCCCCC----------------CC--HHHHH-----------HH--
T ss_conf             887376065357984747503------------3775864----------------46--99999-----------99--


Q ss_pred             HHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf             85149998899-887349823788998779806238
Q gi|254780747|r  194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG  228 (293)
Q Consensus       194 a~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig  228 (293)
                          .+..... +-+..|+.+++++|++.||||++.
T Consensus       137 ----~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vV  168 (169)
T pfam00378       137 ----IIGHSAALEMLLTGRRIRAQEALKMGLVDKVV  168 (169)
T ss_pred             ----HHCHHHHHHHHHCCCCCCHHHHHHCCCEEECC
T ss_conf             ----97999999999819946799999829653215


No 94 
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.67  E-value=4.5e-07  Score=64.48  Aligned_cols=160  Identities=16%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-----------HHHHHHHHHH
Q ss_conf             872899997666238------6999999999861899879999758----888888999-----------9999999984
Q gi|254780747|r   35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-----------EAIFRAIQKV   93 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-----------~~i~~ai~~~   93 (293)
                      +++|+.|.++-+=.+      .+++.+.++++.+|.  +.||+.=+    |.|++....           ....+...++
T Consensus        10 ~~~Va~itlnr~~~Nal~~~~~~~l~~al~~~~~d~--~vvvltg~g~~FsAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   87 (229)
T PRK06213         10 EDGVATITLDDGKVNAISPDMIDALNAALDQAEDDR--AAVVLTGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRL   87 (229)
T ss_pred             ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999998999878999999999999999753598--299998899862178767766017276899999899999999


Q ss_pred             C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf             1-478679960332332232100011100013013-53455565302102456777420422553155211234666789
Q gi|254780747|r   94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETS-LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN  171 (293)
Q Consensus        94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s-~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s  171 (293)
                      . ..||||+.+++.|..||..++.+||-.++.++. .+|.       +.     -++|+..             |   . 
T Consensus        88 ~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~~~~~~~-------~e-----~~iGl~~-------------~---~-  138 (229)
T PRK06213         88 LSHPKPVIVACTGHAIAKGAFLLLSGDYRIGVHGPFKIGL-------NE-----VAIGMTM-------------P---H-  138 (229)
T ss_pred             HHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCC-------CC-----CEECCCC-------------C---H-
T ss_conf             9579999999878651199899871888999668612168-------62-----3268888-------------6---5-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             99988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r  172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                       ..-..+           ...+...+     ..+-+..|+.|+|++|+++||||++...++..+++.+.+.
T Consensus       139 -~g~~~~-----------~~~~~~~~-----~~~~~ltg~~~~a~eA~~~GlV~~vv~~~~l~~~a~~~A~  192 (229)
T PRK06213        139 -AGIELA-----------RDRLTPSA-----FQRSVINAEMFDPETAVAAGFLDEVVPPEQLLTRAQAAAR  192 (229)
T ss_pred             -HHHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             -599999-----------99889999-----9999984997509999987986167688899999999999


No 95 
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.66  E-value=1.1e-06  Score=62.15  Aligned_cols=158  Identities=17%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             EEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----HHH----HHHHHHHHC-CC
Q ss_conf             89999766623----8---69999999998618998799997588----8888899-----999----999999841-47
Q gi|254780747|r   38 VARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----GEA----IFRAIQKVK-NR   96 (293)
Q Consensus        38 i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----~~~----i~~ai~~~k-~~   96 (293)
                      |++|.++-|=.    +   .+++.+.++.+.+|++++.|||.=+.    .|++...     ++.    ....++.++ ..
T Consensus         2 Va~itlnRP~~~Nal~~~m~~eL~~a~~~~~~d~~vr~vVl~g~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (240)
T PRK06072          2 VAVITIDRPDKLNALNLETRNELISALREINADPKIRVVILTGEGRAFSVGADLSEISEDITEDLRDSFHPIIKEIRFSN   81 (240)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             79999748988899899999999999999975899069999879986551588788745446889999999999998389


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             86799603323322321000111000130135345556530210245677742042255315521123466678999988
Q gi|254780747|r   97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ  176 (293)
Q Consensus        97 kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~  176 (293)
                      ||+|+.+++.|..||.-+|++||-+++.+++.++.-            .-|+|+-+.         .+     .      
T Consensus        82 kp~Iaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~---------~g-----~------  129 (240)
T PRK06072         82 KIYISAVNGVVAGAGISIALSTDFRFASKDVRFVTA------------FQRIGLAPD---------TG-----L------  129 (240)
T ss_pred             CCEEEEECCEEEHHHHHHHHHCCEEEECCCCCEECC------------CCCCCCCCC---------CC-----H------
T ss_conf             998999888755687999986276553023210067------------556050899---------76-----9------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHCC
Q ss_conf             777776666677899998514999889988734982378899877980623898-999999997418
Q gi|254780747|r  177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGV  242 (293)
Q Consensus       177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~~  242 (293)
                                ..++..+--     ....+-+..|+.|++++|++.|||+..... +++.+.+..+..
T Consensus       130 ----------~~~l~~l~g-----~~a~~~ll~g~~~~a~eA~~~Glv~~~~~~l~~a~~la~~ia~  181 (240)
T PRK06072        130 ----------AYILLKLGG-----VRFYDHLILGGEFTAEDAEEWGILKISEDPLSDALKMAEEISS  181 (240)
T ss_pred             ----------HHHHHHHHH-----HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             ----------999999999-----9999988618973799999879941166658999999999983


No 96 
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.65  E-value=5.2e-07  Score=64.08  Aligned_cols=152  Identities=14%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH
Q ss_conf             87289999766623-8------69999999998618998799997588----88888999----------9999999984
Q gi|254780747|r   35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV   93 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~   93 (293)
                      +++|+.|.++-|-. +      .+++.+.++++.+|  ++.|||.=+.    .|++....          +.+++.+.++
T Consensus        11 ~~~Va~itLnRP~~~NAl~~~m~~el~~al~~~~~d--~~vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l   88 (251)
T PRK07112         11 DGDICFLQLHRPDAQNAINNRLIAECMDVLDRCEHA--ATIVVLEGLPDVFCFGADFSDIAEKPDALIDSEPLYGLWHRL   88 (251)
T ss_pred             ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             999999997388877887999999999999851669--808999889987056777276651632212467999999999


Q ss_pred             C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf             1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r   94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP  172 (293)
Q Consensus        94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~  172 (293)
                      . ..||+++.+++.|..||.-++++||-+++.+++.+|.--            -++|+-+.         .+        
T Consensus        89 ~~~p~pvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~pe------------~~~Gl~p~---------~~--------  139 (251)
T PRK07112         89 ATGPYITIAHVQGKVNAGGIGFVAASDIAIADENVPFSLSE------------LLFGLIPA---------CV--------  139 (251)
T ss_pred             HHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECCC------------CCCCCCCC---------CH--------
T ss_conf             84998299996165666156776521502457998898741------------06373777---------37--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             998877777666667789999851499988998873498237889987798062389899999
Q gi|254780747|r  173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ  235 (293)
Q Consensus       173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~  235 (293)
                                   ...+...|-..|     ..+-+..|+.++|++|+++||||++.-..+...
T Consensus       140 -------------~~~L~r~iG~~~-----A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~~~~  184 (251)
T PRK07112        140 -------------LPFLARRIGTQK-----AHYMTLMTQPVTAQQAFSWGLVDAIDANSDTLL  184 (251)
T ss_pred             -------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHH
T ss_conf             -------------999999997999-----999999399624999998799788619778999


No 97 
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP; InterPro: IPR001907   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin . It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP , although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit.   Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0008462 endopeptidase Clp activity, 0006508 proteolysis.
Probab=98.36  E-value=1.6e-06  Score=61.07  Aligned_cols=154  Identities=23%  Similarity=0.297  Sum_probs=99.1

Q ss_pred             EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r   41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS  118 (293)
Q Consensus        41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a  118 (293)
                      |-+.+.|.+.  +.++.++--....+.-|-|-|++|||||++.+.-.|++.++..|-  .|.+.+-+.++|-|-++.+++
T Consensus        30 ~~l~~~~~d~~a~~~vaqllfl~~e~~~k~i~ly~nsPGG~~~aG~~iydtm~~i~P--~v~t~C~G~aasmGafll~~G  107 (192)
T TIGR00493        30 IFLSGEVEDEVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAAG  107 (192)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHCC--CHHEEEHHHHHHHHHHHHHCC
T ss_conf             332020013578899999887513687551588983688500144688877875163--220000101666778987437


Q ss_pred             C--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1--00013013534555653021024567774204225531552112346667--8999988777776666677899998
Q gi|254780747|r  119 N--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVS  194 (293)
Q Consensus       119 d--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~--~s~e~~~~~~~~l~~~~~~f~~~Va  194 (293)
                      .  +-.+-|.+.+-      -                          ..|+-.  -...+.+.....+-.+...+.+.++
T Consensus       108 ~~Gkr~~l~~~~~m------i--------------------------hqPlGG~~Gqa~~i~i~a~~il~~~~~~~~~l~  155 (192)
T TIGR00493       108 AKGKRAALPNSRIM------I--------------------------HQPLGGAQGQASDIEIQAKEILKLKKLLNEILA  155 (192)
T ss_pred             CCCCHHCCCCCEEE------E--------------------------ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65310002434057------8--------------------------647788665401345668999999999999998


Q ss_pred             HCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCC
Q ss_conf             514999889988734-9823788998779806238
Q gi|254780747|r  195 ESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVG  228 (293)
Q Consensus       195 ~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig  228 (293)
                      .+.|.+.|.+..-.+ ....++++|.++||||.+-
T Consensus       156 ~~~G~~~e~~~~d~~rd~f~~a~~a~~yGl~d~~l  190 (192)
T TIGR00493       156 EHTGQSLEKIEKDTERDFFMSAEEAKEYGLIDKVL  190 (192)
T ss_pred             HHHCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHH
T ss_conf             74073167887654222210225565303078884


No 98 
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803    Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=98.31  E-value=2.1e-06  Score=60.31  Aligned_cols=96  Identities=16%  Similarity=0.326  Sum_probs=76.6

Q ss_pred             CCEEEEEEEEEEECCH--------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH------------------HHHH
Q ss_conf             8728999976662386--------9999999998618998799997588888889999------------------9999
Q gi|254780747|r   35 SPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGE------------------AIFR   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~--------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~------------------~i~~   88 (293)
                      .+-|+||.|+-|-+-.        .++-+.|++...|+.|+.+||-=.-||.-+++++                  +-.+
T Consensus        20 ~gdVaVvkid~PN~KvN~L~k~l~~Ef~~v~~~l~~~~~v~SaVliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~   99 (740)
T TIGR02441        20 KGDVAVVKIDSPNSKVNTLSKELSAEFKEVLNELWTNEAVKSAVLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQE   99 (740)
T ss_pred             ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             06779998778997301113789999999998730682524688974699870325626789872268999998677899


Q ss_pred             HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHH
Q ss_conf             99984-147867996033233223210001110001301--3534
Q gi|254780747|r   89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVG  130 (293)
Q Consensus        89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vG  130 (293)
                      .+.++ |+.|||||.+.+.|..||.=+|.+|.+-+|...  |+.|
T Consensus       100 ~~~r~E~S~KPiVAAI~GsClGGGLElAlaChYRIAtkD~KT~Lg  144 (740)
T TIGR02441       100 MFERIEKSKKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG  144 (740)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             999974289875875226310416899875044112236545346


No 99 
>PRK05617 enoyl-CoA hydratase; Provisional
Probab=98.19  E-value=7.6e-06  Score=56.75  Aligned_cols=102  Identities=17%  Similarity=0.255  Sum_probs=73.1

Q ss_pred             CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH------------HH---
Q ss_conf             787289999766623-8------69999999998618998799997588-----888889999------------99---
Q gi|254780747|r   34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE------------AI---   86 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~------------~i---   86 (293)
                      .+++|++|.++-|=. +      .+++.+.++.+.+|++|++|||+=.+     .||++....            ..   
T Consensus        14 ~~g~v~~itLNRP~~lNAl~~~m~~~l~~~l~~~~~d~~v~~vvl~g~G~kaFcAGgDi~~l~~~~~~~~~~~~~~ff~~   93 (356)
T PRK05617         14 VEGGAGVITLNRPKALNALSLEMIRAIDQALDAWEDDDAVAAVVLEGAGERAFCAGGDIRALYEAARAGDALARDRFFRE   93 (356)
T ss_pred             EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             88999999967862036899999999999999986299823999973887716677548989753113686789999999


Q ss_pred             -HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHH
Q ss_conf             -99999841-478679960332332232100011100013013534----55565
Q gi|254780747|r   87 -FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG----SIGVL  135 (293)
Q Consensus        87 -~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG----siGv~  135 (293)
                       +..-..+. .+||+++.++++|..||.-+|++||..++.+++.++    .||++
T Consensus        94 ey~l~~~i~~~~KP~IA~i~G~~mGGG~~Lal~~d~RIate~t~famPE~~iGl~  148 (356)
T PRK05617         94 EYRLNARIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFF  148 (356)
T ss_pred             HHHHHHHHHHCCCCEEEEEECEEEECHHHHHHHCCEEEECCCCEEECCCCCCCCC
T ss_conf             9999999997799989995162664489997608757852664351553244757


No 100
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.12  E-value=1.8e-05  Score=54.34  Aligned_cols=94  Identities=18%  Similarity=0.301  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf             47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r   95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA  174 (293)
Q Consensus        95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~  174 (293)
                      ...|.++.+++.|..||.-+|++||-+++.+++.+|.--+.            +|+-+         +.       --  
T Consensus       119 ~p~~tIAaV~G~a~GGG~elalacD~~IA~~~A~fg~pEv~------------lGl~P---------g~-------Gg--  168 (286)
T PRK08788        119 AGAISIALVQGNALGGGFEAALSHHTIIAEEGVKMGFPEIL------------FNLFP---------GM-------GA--  168 (286)
T ss_pred             CCCCEEEEECCEECHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCC---------CC-------HH--
T ss_conf             99846999847312577999997898997399886363013------------48687---------86-------07--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             8877777666667789999851499988-998873498237889987798062389899999
Q gi|254780747|r  175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ  235 (293)
Q Consensus       175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~  235 (293)
                                 +.....      .+... ..+-+..|+.|+|++|.+.||||++.-.++..+
T Consensus       169 -----------~~~L~R------~iG~~~A~emiltG~~~sAeeA~~~GLVd~vvp~g~~~~  213 (286)
T PRK08788        169 -----------YSFLAR------RIGPQLAEELILSGKLYSAEELHDMGLVDQLVERGQGYA  213 (286)
T ss_pred             -----------HHHHHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCHHH
T ss_conf             -----------889998------869999999998299168999997699838528984899


No 101
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802   Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=97.81  E-value=0.00041  Score=45.83  Aligned_cols=164  Identities=18%  Similarity=0.292  Sum_probs=103.9

Q ss_pred             CCCCEEEEEEEE--EEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHH---------HHHHHHH--
Q ss_conf             778728999976--662386------99999999986189987999975888-----88889---------9999999--
Q gi|254780747|r   33 DNSPHVARIAIR--GQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAY---------AGEAIFR--   88 (293)
Q Consensus        33 ~~~~~i~~i~i~--G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~---------~~~~i~~--   88 (293)
                      .-++.|++|.|+  |.-++.      +++.+-|.++.++++++|+|+.=.-|     |.+..         .++.+++  
T Consensus         6 ~r~d~ia~ltiDVpge~mNTLkaeF~~qv~~il~q~~~~~~l~GlV~~SgKpD~FiAGADI~Ml~aC~TA~~A~~La~~G   85 (732)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILKQLKEKKELRGLVLVSGKPDSFIAGADISMLAACQTADDAKALAQKG   85 (732)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             46786279997127885202255446899999999972888735899852788712254188886137767999999865


Q ss_pred             --HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             --9998414-7867996033233223210001110001301--3534555653021024567774204225531552112
Q gi|254780747|r   89 --AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE  163 (293)
Q Consensus        89 --ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~  163 (293)
                        .+.++.+ .-||||.+++-|..||.=||.||+.-+.+..  |..|.==|.            ||+=+         . 
T Consensus        86 q~~~~~l~ALp~~VvAAIHGaCLGGGLELALACH~RvCsdD~KT~LGlPEVQ------------LGLLP---------G-  143 (732)
T TIGR02440        86 QELFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQ------------LGLLP---------G-  143 (732)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCEECCCCCEEECCCCHH------------HCCCC---------C-
T ss_conf             8999864117840788504886550489999708760258987230686040------------12458---------7-


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             3466678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV  242 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~  242 (293)
                          +.-|    +.+=.++               |++ ..++-+.+|+=.-++||+++||||++.-.+=.++-+.+++.
T Consensus       144 ----sGGT----QRLPRLv---------------Gv~-~ALdMiLTGKQlRakqAlklGLV~dvVP~~ILL~~A~~~A~  198 (732)
T TIGR02440       144 ----SGGT----QRLPRLV---------------GVS-TALDMILTGKQLRAKQALKLGLVDDVVPRSILLDVAVELAL  198 (732)
T ss_pred             ----CCCC----CCCHHHH---------------HHH-HHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             ----7763----3002587---------------798-89887630321015778525872324641579999999985


No 102
>KOG1681 consensus
Probab=97.79  E-value=0.00025  Score=47.24  Aligned_cols=165  Identities=22%  Similarity=0.327  Sum_probs=106.1

Q ss_pred             CCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECC-------------------CCCCC-HH-HH
Q ss_conf             67787289999766623-------86999999999861899879999758-------------------88888-89-99
Q gi|254780747|r   32 EDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLS-------------------SPGGS-AY-AG   83 (293)
Q Consensus        32 ~~~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~-------------------SpGG~-~~-~~   83 (293)
                      +...|+|..+.++-|--       =..++.+.++...+||.+++|+|.-.                   .+-|. ++ .+
T Consensus        26 k~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g  105 (292)
T KOG1681          26 KSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG  105 (292)
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf             37887479998468310004669999999999875346988429999568751213657302455520264330376653


Q ss_pred             HHHHHHHHHH--------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf             9999999984--------14786799603323322321000111000130135345556530210245677742042255
Q gi|254780747|r   84 EAIFRAIQKV--------KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV  155 (293)
Q Consensus        84 ~~i~~ai~~~--------k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~  155 (293)
                      ..+++.|+++        ++.|||++.+++.|..+|.=+.++||--|+...+++.                     +..+
T Consensus       106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffs---------------------vkEV  164 (292)
T KOG1681         106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFS---------------------VKEV  164 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEECCEEEECCCCEEE---------------------EEEE
T ss_conf             9999999999999899983890189998753205552101202445641230146---------------------5654


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCCCCHHHHHHCCCCCCC-CCHHHH
Q ss_conf             3155211234666789999887777766666778999985149998899887-34982378899877980623-898999
Q gi|254780747|r  156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVV-GGQEEV  233 (293)
Q Consensus       156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~-~~g~~~~~~~A~~~GLvD~i-g~~~~a  233 (293)
                      -.|--.+.+.         .+.+...+.+                ..-.+++ +.++-|.|.+|++.|||-++ .+.++.
T Consensus       165 DvglaADvGT---------L~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l  219 (292)
T KOG1681         165 DVGLAADVGT---------LNRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLVSRVFPDKEEL  219 (292)
T ss_pred             EEEHHHCHHH---------HHHHHHHHCC----------------HHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCHHHH
T ss_conf             2201113146---------7665687553----------------67888887665223403566437410106978998


Q ss_pred             HHHHHHHCC
Q ss_conf             999997418
Q gi|254780747|r  234 WQSLYALGV  242 (293)
Q Consensus       234 ~~~l~~~~~  242 (293)
                      +.....++.
T Consensus       220 l~~~l~mA~  228 (292)
T KOG1681         220 LNGALPMAE  228 (292)
T ss_pred             HHHHHHHHH
T ss_conf             750477888


No 103
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.69  E-value=0.00043  Score=45.71  Aligned_cols=122  Identities=15%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      +.-++.++.|.+=. . -|+--||+||..+       .+++.|++-|..+.. +-|+++.+-+-..|||.+-...||+++
T Consensus        85 RKA~Rlm~lAekf~-~-PvitfIDTpGA~pg~~AEerGqaeaIA~~l~~m~~l~VPiIsvIiGEGgSGGALAl~~~D~Vl  162 (256)
T PRK12319         85 RKALRLMKQAEKFG-R-PVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVW  162 (256)
T ss_pred             HHHHHHHHHHHHHC-C-CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCEEE
T ss_conf             99999999999809-9-879996079867885321038999999999999769998799997687663210111257045


Q ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r  123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD  202 (293)
Q Consensus       123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~  202 (293)
                      |-++++                                      |+-+|||....+      +|.            +.+
T Consensus       163 MlE~a~--------------------------------------YSVISPEGcASI------Lwr------------d~~  186 (256)
T PRK12319        163 MLENTM--------------------------------------YAVLSPEGFASI------LWK------------DGS  186 (256)
T ss_pred             EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH
T ss_conf             445718--------------------------------------996588887888------616------------734


Q ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             9988734982378899877980623898
Q gi|254780747|r  203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      ...+-++..-.|+++-+++|+||+|-.+
T Consensus       187 ka~eAAealklTa~dL~~lgiID~II~E  214 (256)
T PRK12319        187 RATEAAELMKITAGELYQMGIVDKVIPE  214 (256)
T ss_pred             HHHHHHHHCCCCHHHHHHCCCCCEEEEC
T ss_conf             4599999834799999868997188508


No 104
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.58  E-value=0.00081  Score=43.99  Aligned_cols=122  Identities=20%  Similarity=0.310  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      +.-++.++.|.+=.  .-|+--||+||..+       .+++.|++-|..... +-|+++.+-+-..|||-+-...||+|+
T Consensus       137 RKAlRlm~lAekf~--~Pvit~IDTpGAypG~~AEerGqaeAIA~~l~~m~~l~vPiisviiGEGgSGGALal~~~d~v~  214 (318)
T PRK05724        137 RKALRLMEMAERFG--LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVL  214 (318)
T ss_pred             HHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCEEE
T ss_conf             99999999999709--9779993489767898763138899999999999689998799997788744477772468588


Q ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r  123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD  202 (293)
Q Consensus       123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~  202 (293)
                      |-.+++                                      |+-.|||....+      +|.            +.+
T Consensus       215 Mle~a~--------------------------------------YSViSPEgcAsI------Lwk------------d~~  238 (318)
T PRK05724        215 MLEHST--------------------------------------YSVISPEGCASI------LWK------------DAA  238 (318)
T ss_pred             EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH
T ss_conf             844718--------------------------------------885487776687------625------------886


Q ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             9988734982378899877980623898
Q gi|254780747|r  203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      ...+-++..-.|+++-+++|+||+|-.+
T Consensus       239 ~a~eAAe~lkiTa~dL~~lgiiD~II~E  266 (318)
T PRK05724        239 KAPEAAEAMKITAQDLKELGIIDEIIPE  266 (318)
T ss_pred             HHHHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf             7599999758999999867997165469


No 105
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.50  E-value=0.0012  Score=42.96  Aligned_cols=122  Identities=19%  Similarity=0.276  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      +.-++.++.|.+= + .-|+--||+||..+       .+++.|++-|..... +-|+++.+-+-..|||-+-...||+++
T Consensus       141 RKAlRlm~lAekf-~-~Pvit~IDTpGAypG~~AEerGQaeAIA~nL~~m~~L~vPiisvViGEGGSGGALAl~vaDrvl  218 (322)
T CHL00198        141 RKALRLMEHANRF-G-LPILTFIDTPGAWAGLKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIL  218 (322)
T ss_pred             HHHHHHHHHHHHC-C-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             9999999999970-9-9779983289867887633158799999999999679998799997688762332201467466


Q ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r  123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD  202 (293)
Q Consensus       123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~  202 (293)
                      |-.+++                                      |+-.|||....+      +|.            +.+
T Consensus       219 Mle~s~--------------------------------------YSVISPEGcAsI------Lwk------------d~~  242 (322)
T CHL00198        219 MLEYAV--------------------------------------YTVATPEACAAI------LWK------------DSK  242 (322)
T ss_pred             EECCEE--------------------------------------EEECCHHHHHHH------HCC------------CHH
T ss_conf             452517--------------------------------------885488887787------336------------802


Q ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             9988734982378899877980623898
Q gi|254780747|r  203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      ...+-++..-.|+++-+++|+||+|-.+
T Consensus       243 ~a~eAAealkiTA~dL~~lgIID~II~E  270 (322)
T CHL00198        243 KSAEAAEALKITSEDLLVLGIIDEILPE  270 (322)
T ss_pred             HHHHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf             4799998701169999977997276368


No 106
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.46  E-value=0.0025  Score=40.86  Aligned_cols=158  Identities=20%  Similarity=0.280  Sum_probs=101.9

Q ss_pred             CCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------------------------H
Q ss_conf             87289999766623-------8699999999986189987999975888888899------------------------9
Q gi|254780747|r   35 SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYA------------------------G   83 (293)
Q Consensus        35 ~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~------------------------~   83 (293)
                      .+.|+.|.|+-|=.       ...++++++..|..|++|--|+|.=++-|+-+..                        .
T Consensus        26 ~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~iGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnv  105 (282)
T COG0447          26 VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNV  105 (282)
T ss_pred             CCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             68557998468666236787329999999986301788328998547888843505887121167777457666763000


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCC-
Q ss_conf             9999999984147867996033233223210001110001301353455565302102456777420422553155211-
Q gi|254780747|r   84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA-  162 (293)
Q Consensus        84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~-  162 (293)
                      -++...|+-  -.|||++.+.+++..||--+-..||--+|..++.+|-.|--                     +|.|-. 
T Consensus       106 LdlQrlIR~--~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~---------------------VGSFD~G  162 (282)
T COG0447         106 LDLQRLIRT--MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPK---------------------VGSFDGG  162 (282)
T ss_pred             HHHHHHHHH--CCCCEEEEECCEEECCCCEEEEEEEEEEECCCCHHCCCCCC---------------------CCCCCCC
T ss_conf             238889874--89655999703750586279998542550001311378998---------------------3420586


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH----HHHHHH
Q ss_conf             2346667899998877777666667789999851499988998873498237889987798062389899----999999
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE----VWQSLY  238 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~----a~~~l~  238 (293)
                      .++          ..+-           ..|-+    . ..-+-|+=++.|++++|++.|||..+...++    .++|..
T Consensus       163 ~Gs----------~yla-----------r~VGq----K-kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~  216 (282)
T COG0447         163 YGS----------SYLA-----------RIVGQ----K-KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAR  216 (282)
T ss_pred             CCH----------HHHH-----------HHHHH----H-HHHHHHHHHHCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH
T ss_conf             447----------8999-----------98642----5-65654123310569999856871231338888899999999


Q ss_pred             HHC
Q ss_conf             741
Q gi|254780747|r  239 ALG  241 (293)
Q Consensus       239 ~~~  241 (293)
                      ++.
T Consensus       217 E~l  219 (282)
T COG0447         217 EML  219 (282)
T ss_pred             HHH
T ss_conf             998


No 107
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968    This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway  which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=97.45  E-value=0.00057  Score=44.94  Aligned_cols=162  Identities=31%  Similarity=0.417  Sum_probs=110.6

Q ss_pred             CCEEEEEEEEEEEC--CH-----HHHHHHHHHHHCCCCCCEEEEE-----------CC----CCCCCHH----HHHHHHH
Q ss_conf             87289999766623--86-----9999999998618998799997-----------58----8888889----9999999
Q gi|254780747|r   35 SPHVARIAIRGQIE--DS-----QELIERIERISRDDSATALIVS-----------LS----SPGGSAY----AGEAIFR   88 (293)
Q Consensus        35 ~~~i~~i~i~G~I~--~~-----~~l~~~l~~a~~d~~ik~ivL~-----------i~----SpGG~~~----~~~~i~~   88 (293)
                      +..|+.|++|-|=-  +.     .++.+.|++++.|+.|++++|-           ++    +|||.+.    ..|.-|+
T Consensus         6 ~~GV~~LTLNRPd~LNSF~~~MH~~l~~aL~~ver~~~~R~l~LTGAGRGFcAGQDL~dr~v~~~G~~pDLG~~ve~fYn   85 (259)
T TIGR02280         6 EKGVARLTLNRPDKLNSFTAEMHAELREALERVERDDDARALLLTGAGRGFCAGQDLSDRNVTPGGAAPDLGETVEKFYN   85 (259)
T ss_pred             HCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf             25601431377001024008899999999866401575458887388874344655544678874225853221777507


Q ss_pred             -HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             -9998414-78679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r   89 -AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus        89 -ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                       .++++++ .||||+.+++.++.+|--||.+||=++|..++.            |-..+-|+|.-++        +-+..
T Consensus        86 PLvRrL~~Lp~PVv~AVNGVAAGAGAnLALAcDIvlAa~sA~------------FiqAF~klGL~PD--------sGGTw  145 (259)
T TIGR02280        86 PLVRRLRALPKPVVCAVNGVAAGAGANLALACDIVLAARSAK------------FIQAFAKLGLIPD--------SGGTW  145 (259)
T ss_pred             HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHCCCCC--------CCCHH
T ss_conf             489999726997798535103447788887511999987557------------9988875246779--------85000


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH-HHHHHHHHHCC
Q ss_conf             66789999887777766666778999985149998899887349823788998779806238989-99999997418
Q gi|254780747|r  167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGV  242 (293)
Q Consensus       167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~-~a~~~l~~~~~  242 (293)
                      +-|                     ..|-+.|-    .-..+ -|.-.+|+||.++|||=++-.-+ ....++..++.
T Consensus       146 ~LP---------------------r~vG~ARA----~GLAl-lG~~LdA~~A~~WGLIW~~v~D~k~L~~~~~~LA~  196 (259)
T TIGR02280       146 LLP---------------------RLVGRARA----MGLAL-LGEKLDARTAAEWGLIWQVVDDAKALMDEAQALAA  196 (259)
T ss_pred             HHH---------------------HHHHHHHH----HHHHH-HCCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf             466---------------------89999999----99885-04846868897438644220057899999999999


No 108
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.40  E-value=0.00082  Score=43.94  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHCCCC---CCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf             999999999861899---87999975888888-------899999999999841478679960332--332232100011
Q gi|254780747|r   51 QELIERIERISRDDS---ATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS  118 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~---ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a  118 (293)
                      ..+...++.|.++..   -..+++-.+|.|+-       ..+..+|..++.+++..-|++..+.+.  |..|.-|++.+|
T Consensus        90 ~KI~~llelA~~~~~~~~~~pvV~~~esGG~RlqE~~~gL~a~aei~~a~~~lsg~VP~I~VI~G~~gCfGG~a~~aal~  169 (302)
T PRK07189         90 AKLAGLLELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAGLC  169 (302)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf             99999999999817557888889996588888565530588999999999984689988999448765616888998728


Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             100013013534555
Q gi|254780747|r  119 NIIVAAETSLVGSIG  133 (293)
Q Consensus       119 d~I~a~p~s~vGsiG  133 (293)
                      |.|+|.+.+.+|.-|
T Consensus       170 D~IImT~~arigm~G  184 (302)
T PRK07189        170 SYLVVSEEGRLGLSG  184 (302)
T ss_pred             CEEEEECCCEEECCC
T ss_conf             589982787561446


No 109
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.19  E-value=0.0023  Score=41.08  Aligned_cols=83  Identities=18%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHCCCC--CC-EEEEECCCCCC-------CHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf             999999999861899--87-99997588888-------8899999999999841478679960332--332232100011
Q gi|254780747|r   51 QELIERIERISRDDS--AT-ALIVSLSSPGG-------SAYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS  118 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~--ik-~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a  118 (293)
                      +.+.+.++.|.++..  .+ .++.-+||.|.       +..+..+|..++.+.+..-|+++.+.+.  |+.|++|++..|
T Consensus        81 ~Ki~r~~e~A~e~~~~~~~~PvI~l~dSGGaRl~e~~~gl~~~~ei~~~~~~~sg~IPqIsvV~G~~~c~GG~a~~~~l~  160 (274)
T TIGR03133        81 AKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC  160 (274)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCC
T ss_conf             99999999999807445787779996178876443320012389999999996699987999955455667707700237


Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             100013013534555
Q gi|254780747|r  119 NIIVAAETSLVGSIG  133 (293)
Q Consensus       119 d~I~a~p~s~vGsiG  133 (293)
                      |.|+|.+.+.++.-|
T Consensus       161 D~iIm~~~~~ifl~G  175 (274)
T TIGR03133       161 SYLIMTEEGRLGLSG  175 (274)
T ss_pred             CEEEEECCCEEECCC
T ss_conf             389997895795338


No 110
>KOG1679 consensus
Probab=97.15  E-value=0.0016  Score=42.11  Aligned_cols=134  Identities=22%  Similarity=0.296  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-----------------HHHHHHHHHHHC-CCCCEEEEECCCCCCCCC
Q ss_conf             99999999986189987999975888888899-----------------999999999841-478679960332332232
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYA-----------------GEAIFRAIQKVK-NRKPVITEVHEMAASAGY  112 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~-----------------~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y  112 (293)
                      +++.+.++....|++++-|+++--.||---++                 ...++..+.... -..|+++.+++.+..||.
T Consensus        61 ~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGL  140 (291)
T KOG1679          61 KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGL  140 (291)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHCCCCH
T ss_conf             99999999974078626999823898605447465765127999999999999999999985786501110200006515


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r  113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      -+|.+||--++..++.+|.+-..            +.|-+         .++     -|    +.+-.            
T Consensus       141 ElALACDiRva~s~akmGLvET~------------laiiP---------GaG-----Gt----QRLpR------------  178 (291)
T KOG1679         141 ELALACDIRVAASSAKMGLVETK------------LAIIP---------GAG-----GT----QRLPR------------  178 (291)
T ss_pred             HHHHHCCCEEHHHHCCCCCCCCC------------EEEEC---------CCC-----CC----CHHHH------------
T ss_conf             65554011002000300420012------------35510---------898-----64----12378------------


Q ss_pred             HHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf             985149998899-887349823788998779806238989
Q gi|254780747|r  193 VSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       193 Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~  231 (293)
                           -+..... +-++.++++.|.+|.++|||..+....
T Consensus       179 -----~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qn  213 (291)
T KOG1679         179 -----IVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQN  213 (291)
T ss_pred             -----HHHHHHHHHHHHHHEECCCHHHHHCCHHHHHHHCC
T ss_conf             -----77488887673221012636677500679998627


No 111
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.12  E-value=0.00051  Score=45.24  Aligned_cols=74  Identities=18%  Similarity=0.342  Sum_probs=51.5

Q ss_pred             HHHHHHHHHH-CCCCCCEEEEECCCC-----CC-------CHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCC
Q ss_conf             9999999986-189987999975888-----88-------8899--------999999999841--47867996033233
Q gi|254780747|r   52 ELIERIERIS-RDDSATALIVSLSSP-----GG-------SAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAA  108 (293)
Q Consensus        52 ~l~~~l~~a~-~d~~ik~ivL~i~Sp-----GG-------~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~  108 (293)
                      ++..++.+.. +-|.|+.||+.-.-+     |.       +..+        ..|-++.|.+..  ++.+.++.+++.|+
T Consensus        52 el~da~~r~rfehp~v~~vv~~s~~~r~fcaGani~mL~~s~h~~kvnfckftnetrn~~edss~~sg~~~iaavnG~~a  131 (548)
T TIGR03222        52 ELHDAVQRLRFEHPEVRTVVMTSGKDKVFCAGANIRMLGGSTHAHKVNFCKFTNETRNGIEDASEHSGQKFLAAINGTAA  131 (548)
T ss_pred             EHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             48989988742388658999933887457457455766256537752476541134566777676329679998515124


Q ss_pred             CCCCCCCCCCCCCCCCH
Q ss_conf             22321000111000130
Q gi|254780747|r  109 SAGYLISCASNIIVAAE  125 (293)
Q Consensus       109 S~~Y~iAs~ad~I~a~p  125 (293)
                      .|||-+|.+||+|++-.
T Consensus       132 GGGYELALAcd~I~lvD  148 (548)
T TIGR03222       132 GGGYELALACDEIMLVD  148 (548)
T ss_pred             CCCEEEHHHCCEEEEEC
T ss_conf             77210003256789970


No 112
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.01  E-value=0.0025  Score=40.91  Aligned_cols=97  Identities=22%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             EEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH--------------HH-HHHHH
Q ss_conf             99997666238-------69999999998618998799997588-----888889999--------------99-99999
Q gi|254780747|r   39 ARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE--------------AI-FRAIQ   91 (293)
Q Consensus        39 ~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~--------------~i-~~ai~   91 (293)
                      |-|.|+-|=.-       .++++.+++.|..|.+|..|||.=-.     .||......              .+ .+.+.
T Consensus        39 AwITINRP~~yNAft~~tVkEli~AF~~A~~D~sVgvIVLTGaGDKAFCTGGDqke~ae~yag~p~e~~~~~~l~~~m~~  118 (360)
T TIGR03200        39 AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVS  118 (360)
T ss_pred             EEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             26783587770478889999999999972428852399995587611215876787545777885235778789999999


Q ss_pred             HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             841-47867996033233223210001110001301353455565
Q gi|254780747|r   92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL  135 (293)
Q Consensus        92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~  135 (293)
                      ..+ .+|||++-+.+++..||--+.++||=.+|+.++.+|..|-.
T Consensus       119 ~Ir~cpKPVIArVNG~AVGGG~eL~maCDLtIAsD~A~FGQ~GPK  163 (360)
T TIGR03200       119 AILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPK  163 (360)
T ss_pred             HHHCCCCCEEEEECCEEECCCCEEEEEEHHHHHHHHHHHCCCCCC
T ss_conf             985799876998715884387178876301345444454278888


No 113
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.88  E-value=0.021  Score=35.07  Aligned_cols=125  Identities=19%  Similarity=0.319  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCC--CCCCCCCC
Q ss_conf             9999999998618998799997588888-------88999999999998414-78679960332332232--10001110
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGY--LISCASNI  120 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y--~iAs~ad~  120 (293)
                      +.+.++++.|.+. ++- +|+-..|.|.       +..+......+++++++ +.|.++...+-. .||.  -.|+.+|-
T Consensus       146 Eki~~a~e~A~~~-~~P-lI~~~~SGGaRMQEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt~Pt-tGGvtASfa~lgDi  222 (288)
T PRK05654        146 EKIVRAVERALEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI  222 (288)
T ss_pred             HHHHHHHHHHHHC-CCC-EEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEECCCCCE
T ss_conf             9999999999974-997-89996787633327467899889999999999976996899966898-58944430247877


Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             00130135345556530210245677742042255315521123466678999988777776666677899998514999
Q gi|254780747|r  121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP  200 (293)
Q Consensus       121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~  200 (293)
                      |+|.|.+.+|.-|-+                                         .++..           +  +..++
T Consensus       223 iiaEp~A~IgFAG~R-----------------------------------------VIeqt-----------i--~~~LP  248 (288)
T PRK05654        223 IIAEPKALIGFAGPR-----------------------------------------VIEQT-----------V--REKLP  248 (288)
T ss_pred             EEEECCCEEEECCCH-----------------------------------------HHHHH-----------C--CCCCC
T ss_conf             998058458731538-----------------------------------------99985-----------0--89899


Q ss_pred             HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             88998873498237889987798062389899999999741
Q gi|254780747|r  201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                               ..+-+++-.++.|+||.|....+..+.+..+.
T Consensus       249 ---------~~FQtae~ll~~G~iD~iv~R~~lk~~l~~ll  280 (288)
T PRK05654        249 ---------EGFQRAEFLLEHGAIDMIVHRRELRDTLASLL  280 (288)
T ss_pred             ---------CCHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             ---------74011899997799636645899999999999


No 114
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.81  E-value=0.0033  Score=40.14  Aligned_cols=120  Identities=19%  Similarity=0.299  Sum_probs=79.5

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999998618998799997588888889-------99999999998414-78679960332332232100011100013
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAY-------AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA  124 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~-------~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~  124 (293)
                      -++..+.|.+  ----|+.-||+||..+.       +++.|+.-+.+... +-|+++.+-+-..|||-+.-..||+++|-
T Consensus       139 AlRlm~~Aek--F~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP~I~iVIGEGgSGGALAi~vad~V~ml  216 (317)
T COG0825         139 ALRLMKLAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLML  216 (317)
T ss_pred             HHHHHHHHHH--HCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999998--59987999508987788545650628999999999857999879999657875246776577899998


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             01353455565302102456777420422553155211234666789999887777766666778999985149998899
Q gi|254780747|r  125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT  204 (293)
Q Consensus       125 p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~  204 (293)
                      .+|+                                      |+-.|||....+      +|.            +.+..
T Consensus       217 e~s~--------------------------------------ySVisPEG~AsI------LWk------------D~~ka  240 (317)
T COG0825         217 ENST--------------------------------------YSVISPEGCASI------LWK------------DASKA  240 (317)
T ss_pred             HHCE--------------------------------------EEECCHHHHHHH------HHC------------CHHHH
T ss_conf             8441--------------------------------------220473132445------525------------83242


Q ss_pred             HHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             88734982378899877980623898
Q gi|254780747|r  205 LVLSDGRIWTGAEAKKVGLIDVVGGQ  230 (293)
Q Consensus       205 ~~~~~g~~~~~~~A~~~GLvD~ig~~  230 (293)
                      .+.+...-.|+.+-+++|+||.|-.+
T Consensus       241 ~eAAe~mkita~dL~~lgiID~II~E  266 (317)
T COG0825         241 KEAAEAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             HHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf             99999827878889767975123468


No 115
>pfam00549 Ligase_CoA CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.
Probab=96.65  E-value=0.01  Score=37.06  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCC-CCCEEEEECCCCCC
Q ss_conf             899997666238699999999986189987999975888888-8999999999998414-78679960332332
Q gi|254780747|r   38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKN-RKPVITEVHEMAAS  109 (293)
Q Consensus        38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S  109 (293)
                      --.|++-|.....+.+.+.++...+||++++|++.+--.+|. -..+..+.+++++.+. ++||++++.+..+.
T Consensus        23 a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~~e~~A~~~v~a~~~~~~~~~PvVa~i~Gt~a~   96 (128)
T pfam00549        23 HNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD   96 (128)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             25888379998633799999999578886299999877436269999999999998469987589999302699


No 116
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198   This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB .   The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity .   Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=96.57  E-value=0.038  Score=33.45  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=106.7

Q ss_pred             CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCCC---------------------------CCC-
Q ss_conf             872899997666238-------699999999986189987999975888---------------------------888-
Q gi|254780747|r   35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSP---------------------------GGS-   79 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~Sp---------------------------GG~-   79 (293)
                      .+.|+.|.|+-|=+-       .++++++|..+..|++|--|||.=+.|                           +|. 
T Consensus        11 ~d~i~~i~i~RP~V~NAFRP~T~~E~~~al~~aR~~~~iGVv~LtG~GPsPkdG~~AFCsGGDQ~irg~~GgY~d~~G~t   90 (278)
T TIGR01929        11 DDGIAKITINRPQVRNAFRPRTVDEIIRALDDAREDPDIGVVILTGAGPSPKDGDKAFCSGGDQKIRGKSGGYIDESGVT   90 (278)
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEECCCCCC
T ss_conf             26378998437821147780048999999997137999627986176777888871265368523755877535578721


Q ss_pred             -----HH-----HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             -----89-----9999999999841478679960332332232100011100013-013534555653021024567774
Q gi|254780747|r   80 -----AY-----AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKL  148 (293)
Q Consensus        80 -----~~-----~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~-p~s~vGsiGv~~~~~~~~~ll~k~  148 (293)
                           ++     ..-++.+.|+-+  .||||+-+.+++..||-.|-..||==+|+ .++.+|-.|-              
T Consensus        91 adtvdPara~~LnvL~~qr~IR~~--PKpVia~V~Gya~GGGh~Lh~~CDLTiAsre~A~fgQtgp--------------  154 (278)
T TIGR01929        91 ADTVDPARASRLNVLEVQRLIRTL--PKPVIAMVNGYAIGGGHVLHVVCDLTIASREHARFGQTGP--------------  154 (278)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCC--CCCEEEEECCEEECCCEEEHHHHHHHHHHHHCCCCCCCCC--------------
T ss_conf             133363124656346554586418--9816887537532576201332302265321340147887--------------


Q ss_pred             HHCCEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCC
Q ss_conf             20422553155211-2346667899998877777666667789999851499988998-873498237889987798062
Q gi|254780747|r  149 GVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV  226 (293)
Q Consensus       149 gi~~~~~~~g~~K~-~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~  226 (293)
                             ++|.|=. .++          .++-           ..|    |  ....+ =|+-++-|+|+||.+.|||-.
T Consensus       155 -------kVGSFDgGyGs----------aYlA-----------R~v----G--QKkaREiwFlcrqY~A~~a~~MG~VN~  200 (278)
T TIGR01929       155 -------KVGSFDGGYGS----------AYLA-----------RIV----G--QKKAREIWFLCRQYDAEEAEKMGLVNA  200 (278)
T ss_pred             -------CCCCCCCCHHH----------HHHH-----------HHH----C--CCHHHHEEECCCCCCHHHHHHCCCCEE
T ss_conf             -------73566563457----------8998-----------640----5--500011000156325688973795301


Q ss_pred             CCCHHH----HHHHHHHHC
Q ss_conf             389899----999999741
Q gi|254780747|r  227 VGGQEE----VWQSLYALG  241 (293)
Q Consensus       227 ig~~~~----a~~~l~~~~  241 (293)
                      +....+    .++|..++.
T Consensus       201 VV~~a~Le~~~i~wa~~il  219 (278)
T TIGR01929       201 VVPLADLEKETIEWAREIL  219 (278)
T ss_pred             ECCHHHHHHHHHHHHHHHH
T ss_conf             0035445589999999986


No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps:  Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i   Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.51  E-value=0.0066  Score=38.22  Aligned_cols=121  Identities=20%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHCCCC-CCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999861899-879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r   52 ELIERIERISRDDS-ATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        52 ~l~~~l~~a~~d~~-ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      -...+|+-+..-++ ---|+.-|||||.-+       -|+|.|+.=|+++.. +-||++.+=+=..|||-+--..+|++-
T Consensus       144 GYRKALrLm~~AerF~~PIi~fiDT~GAYPGigAEerGQsEAIA~NL~Ema~L~VPvic~vIGEGGSGGALaiGVGDkv~  223 (329)
T TIGR00513       144 GYRKALRLMKMAERFNLPIITFIDTPGAYPGIGAEERGQSEAIAKNLREMARLKVPVICTVIGEGGSGGALAIGVGDKVN  223 (329)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             04799999987776179858865388887562044505278999998997109988799985268614789998988998


Q ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r  123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD  202 (293)
Q Consensus       123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~  202 (293)
                      |=.+|+                                      |+=.|||....+      +|.            +.+
T Consensus       224 MLeyS~--------------------------------------YSViSPEGCAai------LWk------------da~  247 (329)
T TIGR00513       224 MLEYST--------------------------------------YSVISPEGCAAI------LWK------------DAS  247 (329)
T ss_pred             HHHHHH--------------------------------------HCCCCHHHHHHH------CCC------------CHH
T ss_conf             876202--------------------------------------200087889986------067------------962


Q ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf             99887349823788998779806238
Q gi|254780747|r  203 KTLVLSDGRIWTGAEAKKVGLIDVVG  228 (293)
Q Consensus       203 ~~~~~~~g~~~~~~~A~~~GLvD~ig  228 (293)
                      .-..-+..-=.|+.+-++++|||.|-
T Consensus       248 ka~~Aa~amkItA~dLkel~lID~iI  273 (329)
T TIGR00513       248 KAEKAAEAMKITAPDLKELGLIDSII  273 (329)
T ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf             67999998378921566401343101


No 118
>PRK08184 enoyl-CoA hydratase; Provisional
Probab=96.46  E-value=0.0015  Score=42.33  Aligned_cols=73  Identities=18%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCC------------CCCCHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCCC
Q ss_conf             999999998618998799997588------------8888899--------999999999841--478679960332332
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSS------------PGGSAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAAS  109 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~S------------pGG~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~S  109 (293)
                      +.++.|+  .+-|.|+.||+.-.-            .|++..+        ..|-++.|..-.  ++.+.++.+++.|+.
T Consensus        67 Da~qR~R--Fehp~v~~vv~~s~k~rvFcaGANI~MLg~s~H~~kVNFCKfTNETRn~~Edss~~sg~~fiaavnG~~AG  144 (558)
T PRK08184         67 DALQRIR--FEHPEVRTVVLTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAG  144 (558)
T ss_pred             HHHHHHH--CCCCCEEEEEEECCCCCEEECCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             7898864--13885379999438863464577624413566421432454144001214444323584787543353347


Q ss_pred             CCCCCCCCCCCCCCCHH
Q ss_conf             23210001110001301
Q gi|254780747|r  110 AGYLISCASNIIVAAET  126 (293)
Q Consensus       110 ~~Y~iAs~ad~I~a~p~  126 (293)
                      |||-+|.+||+|++-..
T Consensus       145 GGYELALAcd~I~LvDD  161 (558)
T PRK08184        145 GGYELALACDEIILVDD  161 (558)
T ss_pred             CCEEEEHHCCEEEEECC
T ss_conf             84211021566899707


No 119
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.45  E-value=0.011  Score=36.73  Aligned_cols=71  Identities=18%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             CEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             728999976662386-------------------------9999999998618998799997588888889999999999
Q gi|254780747|r   36 PHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI   90 (293)
Q Consensus        36 ~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai   90 (293)
                      .+|.+|.=+|+++..                         .++++.|+...+|++.++|+| +..+||+.-  ++.++.|
T Consensus       162 G~VGivSRSGTLTyE~~~~lt~~G~GqSt~VgIGGDpi~Gt~f~d~L~~f~~D~~T~aIVl-iGEIGG~~E--e~aA~~I  238 (309)
T PTZ00187        162 GKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIIL-IGEIGGTAE--EEAADWI  238 (309)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE-EECCCCHHH--HHHHHHH
T ss_conf             8358994477528999999986698669999846987589789999999862957658999-816598699--9999999


Q ss_pred             HHHCCCCCEEEEECCCCCC
Q ss_conf             9841478679960332332
Q gi|254780747|r   91 QKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        91 ~~~k~~kpvva~~~~~~~S  109 (293)
                      ++-.-+|||++|+.+.++-
T Consensus       239 k~~~~~KPVva~IAG~~AP  257 (309)
T PTZ00187        239 KNNPTKKPVVSFIAGITAP  257 (309)
T ss_pred             HHCCCCCCEEEEEEECCCC
T ss_conf             9669999889998125689


No 120
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.28  E-value=0.094  Score=30.97  Aligned_cols=125  Identities=22%  Similarity=0.353  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC--CCCCCCC
Q ss_conf             9999999998618998799997588888-------88999999999998414-786799603323322321--0001110
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYL--ISCASNI  120 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~--iAs~ad~  120 (293)
                      +.+.++++.|.++. ...|++- -|.|.       +..+...+..+|++++. +.|.+++..+-. .||.-  -|+.+|-
T Consensus       144 eki~ra~E~A~e~k-~P~v~f~-aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PT-tGGVsASfA~lGDi  220 (294)
T COG0777         144 EKITRAIERAIEDK-LPLVLFS-ASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI  220 (294)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHCCCE
T ss_conf             99999999999857-9889995-676465768899999999999999999875996699955898-66646767752674


Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             00130135345556530210245677742042255315521123466678999988777776666677899998514999
Q gi|254780747|r  121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP  200 (293)
Q Consensus       121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~  200 (293)
                      |++.|.+.+|.-|-...                                      |  |..=+              +++
T Consensus       221 ~iAEP~AlIGFAGpRVI--------------------------------------E--QTire--------------~LP  246 (294)
T COG0777         221 IIAEPGALIGFAGPRVI--------------------------------------E--QTIRE--------------KLP  246 (294)
T ss_pred             EECCCCCCCCCCCCHHH--------------------------------------H--HHHCC--------------CCC
T ss_conf             65176300015763244--------------------------------------6--56443--------------168


Q ss_pred             HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             88998873498237889987798062389899999999741
Q gi|254780747|r  201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                              +| +=+++.-++.|+||.|....|....+....
T Consensus       247 --------eg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll  278 (294)
T COG0777         247 --------EG-FQTAEFLLEHGMIDMIVHRDELRTTLASLL  278 (294)
T ss_pred             --------CC-HHHHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             --------62-346899997587305633588999999999


No 121
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=96.10  E-value=0.033  Score=33.81  Aligned_cols=71  Identities=21%  Similarity=0.338  Sum_probs=52.3

Q ss_pred             CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             8728999976662386-------------------------999999999861899879999758888888999999999
Q gi|254780747|r   35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA   89 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a   89 (293)
                      ..+|.++.=+|+.+..                         ..+++.|+...+|+..++|++- .-+||..-  ++-++.
T Consensus       145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~aE--e~AA~~  221 (293)
T COG0074         145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPAE--EEAAEY  221 (293)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEE-ECCCCCHH--HHHHHH
T ss_conf             885699966866399999999763885589998578876881599999986458674079999-26799389--999999


Q ss_pred             HHHHCCCCCEEEEECCCCC
Q ss_conf             9984147867996033233
Q gi|254780747|r   90 IQKVKNRKPVITEVHEMAA  108 (293)
Q Consensus        90 i~~~k~~kpvva~~~~~~~  108 (293)
                      |++-.++|||++|+.+..+
T Consensus       222 i~~~~~~KPVVa~iaG~ta  240 (293)
T COG0074         222 IKANATRKPVVAYIAGRTA  240 (293)
T ss_pred             HHHHCCCCCEEEEEECCCC
T ss_conf             9963468986999843679


No 122
>KOG0016 consensus
Probab=96.00  E-value=0.12  Score=30.23  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHH------------HHHHHHH-------HHHHHC-CCCCEEEEECC
Q ss_conf             6999999999861899879999758----8888889------------9999999-------999841-47867996033
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLS----SPGGSAY------------AGEAIFR-------AIQKVK-NRKPVITEVHE  105 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~------------~~~~i~~-------ai~~~k-~~kpvva~~~~  105 (293)
                      ...+.++++.|.+|+++.-+++.-+    +-|.+..            .+....+       -++-|- -+||+++.+.+
T Consensus        37 y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNG  116 (266)
T KOG0016          37 YVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNG  116 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             99999999876504655899994376178506665156653798600011046777777999999974589877999437


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      -+-.-|.-+.--||.+|++..+.            |.--+.++|.-++.-.+--+                         
T Consensus       117 PAIGlgasil~lcD~V~A~Dka~------------F~TPfa~lGq~PEG~Ss~t~-------------------------  159 (266)
T KOG0016         117 PAIGLGASILPLCDYVWASDKAW------------FQTPFAKLGQSPEGCSSVTL-------------------------  159 (266)
T ss_pred             CCCCHHHHHHHHHHEEEECCCEE------------EECCCHHCCCCCCCCEEEEE-------------------------
T ss_conf             73131257764311688525237------------85560122779886204662-------------------------


Q ss_pred             HHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             677899998514999889-988734982378899877980623898999999
Q gi|254780747|r  186 YHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS  236 (293)
Q Consensus       186 ~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~  236 (293)
                                .+.|.... -+-+.-|+.+++++|.+.|||+++-...+.-+.
T Consensus       160 ----------p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~  201 (266)
T KOG0016         160 ----------PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE  201 (266)
T ss_pred             ----------HHHHCHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHH
T ss_conf             ----------175352568889993883308899863825320675777899


No 123
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.58  E-value=0.048  Score=32.81  Aligned_cols=71  Identities=21%  Similarity=0.300  Sum_probs=50.3

Q ss_pred             CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             8728999976662386-------------------------999999999861899879999758888888999999999
Q gi|254780747|r   35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA   89 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a   89 (293)
                      ..+|++|.=+|+++..                         .++.+.|+...+|++.++|+|.-. .||+.-  ++.++.
T Consensus       145 pG~VgiiSrSGtLtye~~~~l~~~g~G~S~~VgiGgD~i~G~~f~d~L~~f~~Dp~T~~IvliGE-iGG~~E--~~aa~~  221 (289)
T PRK05678        145 KGRVGIVSRSGTLTYEAVAQLTDLGLGQSTCVGIGGDPINGTNFIDVLKAFEEDPETDAIVMIGE-IGGSAE--EEAAEW  221 (289)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC-CCCHHH--HHHHHH
T ss_conf             98689997776579999999997698669898527887678449999999742977327999975-598799--999999


Q ss_pred             HHHHCCCCCEEEEECCCCCC
Q ss_conf             99841478679960332332
Q gi|254780747|r   90 IQKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        90 i~~~k~~kpvva~~~~~~~S  109 (293)
                      |+. +-.|||++|+.+.++.
T Consensus       222 i~~-~~~KPVva~iaG~~AP  240 (289)
T PRK05678        222 IKA-NVTKPVVGYIAGVTAP  240 (289)
T ss_pred             HHH-CCCCCEEEEEECCCCC
T ss_conf             985-5899679999514589


No 124
>pfam08496 Peptidase_S49_N Peptidase family S49 N-terminal. This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343).
Probab=95.55  E-value=0.092  Score=31.04  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=8.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             999975888888899999999999
Q gi|254780747|r   68 ALIVSLSSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        68 ~ivL~i~SpGG~~~~~~~i~~ai~   91 (293)
                      -.||+++. .-.+.+.+.+|+.|.
T Consensus        99 vfVldF~G-Di~As~V~~LREEIt  121 (154)
T pfam08496        99 LFVLDFKG-DIDASEVESLREEIT  121 (154)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHH
T ss_conf             89995358-726676688999999


No 125
>KOG1682 consensus
Probab=95.37  E-value=0.23  Score=28.48  Aligned_cols=142  Identities=22%  Similarity=0.289  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCC---------------CCCHHH--HHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC
Q ss_conf             9999999986189987999975888---------------888899--9999999998414-786799603323322321
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSP---------------GGSAYA--GEAIFRAIQKVKN-RKPVITEVHEMAASAGYL  113 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~Sp---------------GG~~~~--~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~  113 (293)
                      .+-..|.+-.++...+.|++.-+.+               |....+  -+...+.+...+. +-||++-++++++-+|-.
T Consensus        63 ~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQ  142 (287)
T KOG1682          63 ALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQ  142 (287)
T ss_pred             HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCE
T ss_conf             99999851244465159999358852246545777624755207899999999999998649986698854433421554


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00011100013013534555653021024567774204225531552112346667899998877777666667789999
Q gi|254780747|r  114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV  193 (293)
Q Consensus       114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V  193 (293)
                      +-..||-+++..+|-+..-|+                ++-.|-     +.     |                      -|
T Consensus       143 LVaSCD~vVa~k~SkF~tPG~----------------~vGlFC-----ST-----P----------------------Gv  174 (287)
T KOG1682         143 LVASCDMVVATKNSKFSTPGA----------------GVGLFC-----ST-----P----------------------GV  174 (287)
T ss_pred             EEEEEEEEEEECCCCCCCCCC----------------CEEEEE-----CC-----C----------------------CH
T ss_conf             888603899705764458988----------------545675-----68-----5----------------------06


Q ss_pred             HHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             851499988-998873498237889987798062389899999999741
Q gi|254780747|r  194 SESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       194 a~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                      +-.|-+++. ...-++.|.+.++++|+-.||+-.+...++.-.+..+..
T Consensus       175 AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~  223 (287)
T KOG1682         175 ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEIT  223 (287)
T ss_pred             HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             6765155267799987179776499998404651477888778999999


No 126
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=95.26  E-value=0.15  Score=29.61  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             EEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHH-----------------H--CC-
Q ss_conf             89999766623-8699999999986189987999975-8888888999999999998-----------------4--14-
Q gi|254780747|r   38 VARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK-----------------V--KN-   95 (293)
Q Consensus        38 i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~-----------------~--k~-   95 (293)
                      |..|+|..--. ..+++..+++++.++. ++|+||++ +.|||...++..+......                 +  .. 
T Consensus       205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~  283 (406)
T COG0793         205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE  283 (406)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             8999933246525899999999998658-858999967899854999999997157887579981688851024556545


Q ss_pred             ---CCCEEEEECCCCCCCCCCCCC
Q ss_conf             ---786799603323322321000
Q gi|254780747|r   96 ---RKPVITEVHEMAASAGYLISC  116 (293)
Q Consensus        96 ---~kpvva~~~~~~~S~~Y~iAs  116 (293)
                         .+|+++.++...+|++=.+|-
T Consensus       284 ~~~~~PlvvLvn~~SASAsEI~ag  307 (406)
T COG0793         284 ALYDGPLVVLVNEGSASASEIFAG  307 (406)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             578999899988998579999999


No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.05  E-value=0.074  Score=31.61  Aligned_cols=78  Identities=19%  Similarity=0.295  Sum_probs=53.7

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH----------HHHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf             999999986189987999975888888899999----------999999841-47867996033233223210-001110
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEA----------IFRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI  120 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~----------i~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~  120 (293)
                      +.+.+.+.-+.+.-+.|++-+|+||-....-+|          +..++...+ .+.|+++.+-+.+.||+|.. +..||+
T Consensus        53 lA~~Vl~~i~~d~krPIv~lvD~~gq~~g~r~E~~Gi~~~~A~l~~~~~~Ar~~GHp~i~lv~g~a~sGafla~gl~a~~  132 (238)
T TIGR03134        53 LAQAVLDVIEADPKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADR  132 (238)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
T ss_conf             99999999983899977999807775456047872399999999999999985499869999657344899986642061


Q ss_pred             CCCCHHHHHH
Q ss_conf             0013013534
Q gi|254780747|r  121 IVAAETSLVG  130 (293)
Q Consensus       121 I~a~p~s~vG  130 (293)
                      +|+-|.+.+-
T Consensus       133 ~~Alp~a~i~  142 (238)
T TIGR03134       133 IIALPGAMVH  142 (238)
T ss_pred             HHCCCCCHHH
T ss_conf             1127874353


No 128
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.03  E-value=0.3  Score=27.85  Aligned_cols=138  Identities=19%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             EEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CHH---HHHHHH
Q ss_conf             2899997666238---------------------69999999998618998799997588888-----889---999999
Q gi|254780747|r   37 HVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-----SAY---AGEAIF   87 (293)
Q Consensus        37 ~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-----~~~---~~~~i~   87 (293)
                      .=|++.-.|.|-+                     .+.+.++++.|.+. +.. +++---| ||     +..   |.....
T Consensus       130 ~dAvv~g~G~I~g~~vvv~vmDF~FmGGSMGsvvGEki~ra~e~A~~~-k~P-lIi~saS-GGARMQEGilSLMQMaKts  206 (305)
T CHL00174        130 TDAVQTGIGQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLP-LIIVCAS-GGARMQEGSLSLMQMAKIS  206 (305)
T ss_pred             CEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCC-EEEEECC-CCCCCCCCHHHHHHHHHHH
T ss_conf             807999999999977999997240115652078899999999999973-997-8999078-7634346277898779999


Q ss_pred             HHHHHH-CC-CCCEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             999984-14-786799603323322321--00011100013013534555653021024567774204225531552112
Q gi|254780747|r   88 RAIQKV-KN-RKPVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE  163 (293)
Q Consensus        88 ~ai~~~-k~-~kpvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~  163 (293)
                      .++.++ ++ +-|.++...+-. .||..  .|+.+|-|+|.|.+++|.-|-+   .                        
T Consensus       207 ~Al~~~~~~~~lpyIsvlt~PT-tGGVtASfA~lgDiiiAEP~AlIGFAG~R---V------------------------  258 (305)
T CHL00174        207 SALYDYQSNKKLFYISILTSPT-TGGVTASFGMLGDIIIAEPNAYIAFAGKR---V------------------------  258 (305)
T ss_pred             HHHHHHHHCCCCCEEEEECCCC-CCCCEEEECCCCCEEEECCCCEEEECCCH---H------------------------
T ss_conf             9999998457873899973788-77801241025665897588667605617---8------------------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG  241 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~  241 (293)
                                    ++.           .+  +..++         ..+=+++-.++.|+||.|....+..+.+..+.
T Consensus       259 --------------Ieq-----------Ti--~~~LP---------egFQtaEfllehG~iD~IV~R~~lk~~l~~lL  300 (305)
T CHL00174        259 --------------IEQ-----------TL--NKTVP---------EGSQAAEYLFHKGLFDLIVPRNLLKGVLSELF  300 (305)
T ss_pred             --------------HHH-----------HH--CCCCC---------CCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf             --------------888-----------61--89899---------86322699997799716765899999999999


No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps:   Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i  Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein   In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=94.79  E-value=0.16  Score=29.51  Aligned_cols=139  Identities=19%  Similarity=0.261  Sum_probs=89.9

Q ss_pred             CEEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHH
Q ss_conf             72899997666238---------------------69999999998618998799997588888-------889999999
Q gi|254780747|r   36 PHVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIF   87 (293)
Q Consensus        36 ~~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~   87 (293)
                      -.=|||.-+|+|.+                     .+.++++|++|..+ ++--|++.- |.|.       |.-|-..+.
T Consensus       113 ~~dAv~tg~G~l~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A~~~-~~P~~i~sA-SGGARMQE~~~SLMQMAKtS  190 (292)
T TIGR00515       113 LKDAVVTGKGTLYGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKAVAD-RVPLVIFSA-SGGARMQEGLLSLMQMAKTS  190 (292)
T ss_pred             CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEC-CCCHHHHHHHHHHHHHHHHH
T ss_conf             8651686003754842799975143458863026888999999999873-798899967-87516899988898889999


Q ss_pred             HHHHHHCCCC-CEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             9999841478-6799603323322321--000111000130135345556530210245677742042255315521123
Q gi|254780747|r   88 RAIQKVKNRK-PVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP  164 (293)
Q Consensus        88 ~ai~~~k~~k-pvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~  164 (293)
                      .+|+++++.| |.|....+- +-||.-  -|+-+|-|+|.|.++||.-|-+..                ..+.|+     
T Consensus       191 aAL~~~~E~~lp~ISvLTdP-T~GGVSASFA~LGDL~iAEPkAlIGFAGpRVI----------------eQT~re-----  248 (292)
T TIGR00515       191 AALARLSEEKLPYISVLTDP-TTGGVSASFAMLGDLNIAEPKALIGFAGPRVI----------------EQTIRE-----  248 (292)
T ss_pred             HHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE----------------EECCCC-----
T ss_conf             99974212258724413688-97226789876402544156423127875023----------------232656-----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4666789999887777766666778999985149998899887349823788998779806238989999999974
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL  240 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~  240 (293)
                                                       +++.+         +=|++=-++.|+||-|..++|..+.|..+
T Consensus       249 ---------------------------------kLPeg---------FQtsEFLL~hG~iD~iV~R~~lk~tL~~l  282 (292)
T TIGR00515       249 ---------------------------------KLPEG---------FQTSEFLLEHGAIDMIVHRPDLKKTLASL  282 (292)
T ss_pred             ---------------------------------CCCCC---------HHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             ---------------------------------58670---------03589998459512566277999999999


No 130
>pfam06833 MdcE Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.
Probab=94.69  E-value=0.11  Score=30.56  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH----------HHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf             9999999861899879999758888888999999----------99999841-47867996033233223210-001110
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAI----------FRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI  120 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i----------~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~  120 (293)
                      +.+.+...-++..-..|++-+|+||-....-+|+          .+++...+ ++.|++..+-+.+.||+|.- +..+|+
T Consensus        51 LA~~Vld~i~~~~~rpIl~lvD~~~Q~~~rrdEllGi~~~lAhla~~~~~AR~~GHpvI~Lv~g~a~sGaFla~gl~a~~  130 (234)
T pfam06833        51 LAAAVLEAIEQRDKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVIGLLYGKAMSGAFLAHGLQANR  130 (234)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             99999999971999877999807765433489984099999999999999997599769987544011899998876352


Q ss_pred             CCCCHHHHHH
Q ss_conf             0013013534
Q gi|254780747|r  121 IVAAETSLVG  130 (293)
Q Consensus       121 I~a~p~s~vG  130 (293)
                      +|+-|.+.+-
T Consensus       131 ~~ALp~a~i~  140 (234)
T pfam06833       131 LIALPGAMVH  140 (234)
T ss_pred             HHCCCCCHHH
T ss_conf             3117985031


No 131
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB; InterPro: IPR012799    Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), dodecenoyl-CoA delta-isomerase activity (5.3.3.8 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is Escherichia coli FadB (P21177 from SWISSPROT). This entry excludes the FadJ family represented by P77399 from SWISSPROT.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004165 dodecenoyl-CoA delta-isomerase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0009062 fatty acid catabolic process, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=94.63  E-value=0.34  Score=27.48  Aligned_cols=139  Identities=19%  Similarity=0.296  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             9999999998618998799997588----8888899------------------99999999984147867996033233
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSS----PGGSAYA------------------GEAIFRAIQKVKNRKPVITEVHEMAA  108 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------~~~i~~ai~~~k~~kpvva~~~~~~~  108 (293)
                      .+|-++|+...++.++||++|.=+-    .|.+.+.                  +..|.+.+.++  .-|.++.+.+++.
T Consensus        38 a~L~~A~d~~~~~s~~kg~~l~S~K~~FIVGADITEFl~~F~~p~~~L~~w~~~AN~~F~~lEDL--pvPT~aa~~G~aL  115 (716)
T TIGR02437        38 ASLDKALDALKAQSDLKGLLLTSGKDAFIVGADITEFLGLFAKPDEELLQWLEFANSVFNKLEDL--PVPTVAAVKGFAL  115 (716)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHCCCCC
T ss_conf             99999999986325741789860873688617489998752488789999998888887540368--8874554045334


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             22321000111000130135345556530210245677742042255315521123466678999988777776666677
Q gi|254780747|r  109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW  188 (293)
Q Consensus       109 S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~  188 (293)
                      .||.=.-.++|.-++.+++.+|.=-            -|+||-+         .++-                       
T Consensus       116 GGG~E~~LAtD~R~~~~~~~IGLPE------------~KLGI~P---------GFGG-----------------------  151 (716)
T TIGR02437       116 GGGCECVLATDFRIADKTAKIGLPE------------TKLGIMP---------GFGG-----------------------  151 (716)
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCC------------HHCCCCC---------CCCC-----------------------
T ss_conf             6417878760100036765326873------------0104568---------8987-----------------------


Q ss_pred             HHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             89999851499988-998873498237889987798062389899999999
Q gi|254780747|r  189 FVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       189 f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~  238 (293)
                         .|.==|-+-.+ .++-++.|+--.+++|++.|+||.+..-+.....+.
T Consensus       152 ---~VRlPR~iGaD~A~E~I~~Gk~~rAe~ALKvg~vDaVV~~~~L~~~A~  199 (716)
T TIGR02437       152 ---TVRLPRVIGADSALEIIASGKEVRAEDALKVGLVDAVVKADKLEAAAL  199 (716)
T ss_pred             ---CEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             ---440550113103678873574123034542124531045678999999


No 132
>pfam03572 Peptidase_S41 Peptidase family S41.
Probab=94.28  E-value=0.24  Score=28.45  Aligned_cols=81  Identities=26%  Similarity=0.369  Sum_probs=53.6

Q ss_pred             EEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHH----------------------
Q ss_conf             899997666238-699999999986189987999975-88888889999999999984----------------------
Q gi|254780747|r   38 VARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV----------------------   93 (293)
Q Consensus        38 i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~----------------------   93 (293)
                      |+.|.+..--.+ .+++.+.++++.+ .+++++||++ +.+||....+..+...+..-                      
T Consensus         2 IgYi~i~sf~~~~~~~~~~~l~~l~~-~~~~~lIiDlR~N~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (166)
T pfam03572         2 IGYLRIPSFSENTPEELAEALKELKK-KNVKGLILDLRGNPGGLLSAAVEIASLFLPDGTIVSTRDRIGDRPPNTTTQSS   80 (166)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCC
T ss_conf             89999674574349999999999987-79976999954799976899999997216889689996667875505740246


Q ss_pred             ----CCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             ----14786799603323322321000111
Q gi|254780747|r   94 ----KNRKPVITEVHEMAASAGYLISCASN  119 (293)
Q Consensus        94 ----k~~kpvva~~~~~~~S~~Y~iAs~ad  119 (293)
                          .-++|+++.++..++|++=.+|.+..
T Consensus        81 ~~~~~~~~pv~vL~~~~t~SaaE~~a~~lk  110 (166)
T pfam03572        81 GERYLTKKPLVVLVNEGTASASEIFAGALK  110 (166)
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             866557899999989997538999986575


No 133
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=93.80  E-value=0.55  Score=26.13  Aligned_cols=89  Identities=20%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             EEEEEEEEEEECCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             2899997666238699---9999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r   37 HVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL  113 (293)
Q Consensus        37 ~i~~i~i~G~I~~~~~---l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~  113 (293)
                      ...-+.+++++.+.+.   +-+.++++..+ .  ...+-+|||||++..+-++.+.|++.  +--+.+.-...|+|+.-+
T Consensus        75 r~l~VvVse~~a~~da~sal~~lir~~G~y-~--~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v~s~A~CasaCpl  149 (245)
T COG3904          75 RQLPVVVSEPGANVDAASALGRLIRKAGLY-I--ATGVTLNSPGGSVAKACSMGKLIRED--GFDTAVDSGAMCASACPL  149 (245)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHCCCCE-E--EEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHCCCHH
T ss_conf             535699737977834899999998556761-6--77778507998578887640144340--567224535555234526


Q ss_pred             CCCCCCCCCCCHHHHHH
Q ss_conf             00011100013013534
Q gi|254780747|r  114 ISCASNIIVAAETSLVG  130 (293)
Q Consensus       114 iAs~ad~I~a~p~s~vG  130 (293)
                      +-+.+-.-++.+.+.+|
T Consensus       150 ~fagGvrRvve~~ayiG  166 (245)
T COG3904         150 MFAGGVRRVVEDFAYIG  166 (245)
T ss_pred             HHHCCEEEEECCCCEEE
T ss_conf             63125146612562355


No 134
>smart00245 TSPc tail specific protease. tail specific protease
Probab=93.64  E-value=0.57  Score=26.07  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             CEEEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf             72899997666238-699999999986189987999975-888888899999999999
Q gi|254780747|r   36 PHVARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        36 ~~i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~   91 (293)
                      +.|..|.+..--.. .+++.+.++++. +.+++++||++ +.|||....+.+|...+.
T Consensus        28 ~~igYi~i~~F~~~~~~~~~~al~~l~-~~~~~~LIlDLR~N~GG~~~~a~~ia~~f~   84 (192)
T smart00245       28 GNIGYIRIPEFSEHTSNLVEKAWKKLE-KTNVEGLILDLRNNPGGLLSAAIDVSSLFL   84 (192)
T ss_pred             CCEEEEEEEEECHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             969999972507234999999999998-679968999957789987889999998633


No 135
>pfam01740 STAS STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=93.07  E-value=0.73  Score=25.39  Aligned_cols=67  Identities=16%  Similarity=0.331  Sum_probs=52.4

Q ss_pred             CCCEEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCC-CCEE
Q ss_conf             787289999766623--869999999998618998799997588-888889999999999984147-8679
Q gi|254780747|r   34 NSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNR-KPVI  100 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~-kpvv  100 (293)
                      ..|.+.++.++|.+.  ....+.+.+.++..++..+.|+|++.. .--+.++...+....+++++. ++++
T Consensus         6 ~~~gv~vi~l~G~Ld~~~a~~~~~~l~~~~~~~~~~~vvlD~~~v~~iDssgl~~l~~~~~~~~~~g~~l~   76 (106)
T pfam01740         6 EIPGILILRLDGPLDFANAEAFRERLLRAIEEGEIRHVILDLSGVPFIDSSGLGALLELYKELRRRGVELV   76 (106)
T ss_pred             EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             76999999967689788999999999999865899789999708988890299999999999997699099


No 136
>PRK11186 carboxy-terminal protease; Provisional
Probab=92.95  E-value=0.65  Score=25.68  Aligned_cols=40  Identities=10%  Similarity=0.389  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHH
Q ss_conf             699999999986189987999975-88888889999999999
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAI   90 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai   90 (293)
                      .+++...|.++.+ ++++|+||++ |.|||+...+.+|....
T Consensus       370 ~~dv~~~l~~Lk~-~~v~glIlDLRnNgGG~L~eAv~l~glF  410 (673)
T PRK11186        370 TDDVKKQLQKLEK-QNVEGIIIDLRGNGGGALTEAVSLSGLF  410 (673)
T ss_pred             HHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf             7899999999986-6997699980579984389999999733


No 137
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=92.91  E-value=0.77  Score=25.24  Aligned_cols=54  Identities=22%  Similarity=0.351  Sum_probs=42.8

Q ss_pred             EEEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf             289999766623-8699999999986189987999975-888888899999999999
Q gi|254780747|r   37 HVARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        37 ~i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~   91 (293)
                      .|..|.|..=-. ..+++.++|+++.+ ++++++||++ |.|||...++.+|.+..-
T Consensus        49 ~IGyI~i~~F~~~t~~~~~~al~~l~~-~g~~glIlDLR~NpGG~l~~av~ia~~Fl  104 (211)
T cd07560          49 PIGYIRITSFSENTAEELKKALKELKK-QGMKGLILDLRNNPGGLLDEAVEIADLFL  104 (211)
T ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             639999425565219999999999997-69967999878999815999999999864


No 138
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089   This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=92.86  E-value=0.27  Score=28.09  Aligned_cols=99  Identities=15%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             CCEEEEEEEEEEECCH-----------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             8728999976662386-----------------------99999999986189987999975888888899999999999
Q gi|254780747|r   35 SPHVARIAIRGQIEDS-----------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~-----------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~   91 (293)
                      +..|+.|.=+|.+...                       =+--+.|+..++|++.+.|++++.+--    ....--+..+
T Consensus       153 ~G~Iaf~SQSGAl~~a~Ldwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~----DG~~Fl~~A~  228 (457)
T TIGR02717       153 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAK  228 (457)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCC----CHHHHHHHHH
T ss_conf             887778971258999999999872781347782674111165778889853989408999717870----4168999988


Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             84147867996033233223210001110001301353455565302102456777420
Q gi|254780747|r   92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV  150 (293)
Q Consensus        92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi  150 (293)
                      ++.++||||++=.+....|+=-.+||       -+|+.||.      --|+.+|++-|+
T Consensus       229 ~~s~~KPiv~lKsG~s~~GakAA~SH-------TGaLAGs~------~~y~aaf~q~G~  274 (457)
T TIGR02717       229 EISKKKPIVVLKSGTSEAGAKAASSH-------TGALAGSD------EAYDAAFKQAGV  274 (457)
T ss_pred             HHHHCCCEEEEECCCCHHHHHHHHHC-------CCHHHHHH------HHHHHHHCCCCE
T ss_conf             86305988999368883456765210-------23133668------999987430143


No 139
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=91.80  E-value=1  Score=24.43  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986189987999975888888-------89999999999984147867996033233223210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a  123 (293)
                      +.+.+..+.|.+. ++. +|.-.+|.|+.       ..+...+..+..+++...|.++++.+.|+.++-|++..||.++|
T Consensus        79 ~Ki~~~~e~A~~~-~lP-~v~l~dsgG~r~~eg~~~l~~~g~i~~~~~~~s~~iP~is~v~G~~~GggA~~~~~sd~~im  156 (487)
T pfam01039        79 FKITRAMELAIKE-GEP-LIGINDSGGARIQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIM  156 (487)
T ss_pred             HHHHHHHHHHHHC-CCC-EEEEEECCCEECCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCEEEE
T ss_conf             4479999999985-995-89998242403476313045311799999997499988999537886368888760871588


Q ss_pred             CHH-HHHHHHH
Q ss_conf             301-3534555
Q gi|254780747|r  124 AET-SLVGSIG  133 (293)
Q Consensus       124 ~p~-s~vGsiG  133 (293)
                      ... +.++.-|
T Consensus       157 ~~~~s~l~~aG  167 (487)
T pfam01039       157 VKGTSPMFLTG  167 (487)
T ss_pred             ECCCCCEECCC
T ss_conf             21764332248


No 140
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=89.73  E-value=1.6  Score=23.19  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             CCCCEEEEEEEEEEE--CCHHHHHHHHHHHHCC-CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             778728999976662--3869999999998618-998799997588-888889999999999984147867996
Q gi|254780747|r   33 DNSPHVARIAIRGQI--EDSQELIERIERISRD-DSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITE  102 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I--~~~~~l~~~l~~a~~d-~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvva~  102 (293)
                      ...+.|.++.++|++  ...+.+.+.+.+...+ +..+.|+|+... +.-+.++.+.+.+.++++++.+-.+.+
T Consensus         5 ~~~~~v~i~~~~g~LfF~~~~~~~~~i~~~~~~~~~~~~vvld~~~v~~iD~s~~~~L~~~~~~~~~~g~~l~~   78 (107)
T cd07042           5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYL   78 (107)
T ss_pred             CCCCCEEEEEECCEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             36898899995670676179999999999871589972999998499854759999999999999977999999


No 141
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors 
Probab=89.50  E-value=1.7  Score=23.08  Aligned_cols=79  Identities=20%  Similarity=0.151  Sum_probs=48.3

Q ss_pred             EEEEEEEEEEECC-----HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHH------------------
Q ss_conf             2899997666238-----699999999986189987999975-8888888999999999998------------------
Q gi|254780747|r   37 HVARIAIRGQIED-----SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK------------------   92 (293)
Q Consensus        37 ~i~~i~i~G~I~~-----~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~------------------   92 (293)
                      .|+.|++++-...     ...+-+.++..++   .+++|+++ +.+||+...+..|...+..                  
T Consensus        64 ~IGYL~i~~f~~~~~~~~~~~l~~al~~l~~---~~~LIIDLR~N~GG~~~~~~~las~f~~~~~~~~~~~~~~~~~~~~  140 (250)
T cd07563          64 YIGYLRIDSFGGFEIAAAEALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTT  140 (250)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf             8689998501874543039999999997338---9879999689999977899999998668993799999883798764


Q ss_pred             -------------HCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             -------------41478679960332332232100011
Q gi|254780747|r   93 -------------VKNRKPVITEVHEMAASAGYLISCAS  118 (293)
Q Consensus        93 -------------~k~~kpvva~~~~~~~S~~Y~iAs~a  118 (293)
                                   .+-+|||++.++...+|++=..|.+.
T Consensus       141 ~~~~~~~~~p~~~~~~~~pv~vLt~~~t~SaaE~fa~~l  179 (250)
T cd07563         141 TELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAYAL  179 (250)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             123211246665545789999997899620999999999


No 142
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809   There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC)  is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC)  is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits.   This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=88.65  E-value=1.9  Score=22.70  Aligned_cols=58  Identities=14%  Similarity=0.296  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH----HHHHHCCCCCEEEEECCCCCCC
Q ss_conf             699999999986189987999975888888899999999----9998414786799603323322
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR----AIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~----ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .+.+.++|+-.-.|++||+|+++|=   |+..-|+.+++    +++..+..-|+|+=..+.-.--
T Consensus       295 ~e~v~eA~~~vLsD~~VKvvfiNIF---GGI~RCD~vA~G~v~A~~~~~~~VP~VvRL~GTN~E~  356 (389)
T TIGR01016       295 EERVKEALKLVLSDKSVKVVFINIF---GGITRCDEVAKGLVEALKDVGVNVPVVVRLEGTNVEE  356 (389)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEC---CCEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
T ss_conf             8999999898735998208999706---8600187887889999831885368789815788788


No 143
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=88.55  E-value=1.9  Score=22.75  Aligned_cols=136  Identities=16%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHCCCCCCEEEEE--CCCCC----C------CHHHHHHHHHHHHH--H--C----CCCCEE-EEECC-
Q ss_conf             3869999999998618998799997--58888----8------88999999999998--4--1----478679-96033-
Q gi|254780747|r   48 EDSQELIERIERISRDDSATALIVS--LSSPG----G------SAYAGEAIFRAIQK--V--K----NRKPVI-TEVHE-  105 (293)
Q Consensus        48 ~~~~~l~~~l~~a~~d~~ik~ivL~--i~SpG----G------~~~~~~~i~~ai~~--~--k----~~kpvv-a~~~~-  105 (293)
                      .+.++..+..++....+    +|+.  +...|    |      ++..+.+.++.+-.  +  +    +++||- ++++. 
T Consensus        26 ~~~~ea~~~~~~l~~~~----~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~QTg~~G~~V~~vlvee~  101 (388)
T PRK00696         26 FTPEEAVEAAEELGGPV----WVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQTGPEGQPVNRLLIEEG  101 (388)
T ss_pred             CCHHHHHHHHHHHCCCC----EEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEEEEEEC
T ss_conf             99999999999829995----89998054588886860799089999999999985677421015888844479998751


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--------CCCCHHHHHH
Q ss_conf             23322321000111000130135345556530210245677742042255315521123466--------6789999887
Q gi|254780747|r  106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--------SEVNPKAVQM  177 (293)
Q Consensus       106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--------~~~s~e~~~~  177 (293)
                      .-..--||++..-|+-...|.=+...-|    ..+..+.-++--=+...+...+.+.. .+|        -.++.+..+.
T Consensus       102 ~~i~~E~Ylsi~~DR~~~~~~~i~S~~G----G~dIEevA~~~Pe~I~k~~idp~~gl-~~~~~r~i~~~lgl~~~~~~~  176 (388)
T PRK00696        102 ADIAKELYLSAVVDRATRRVVFMASTEG----GMEIEEVAEETPEKIHKVAVDPLVGL-QPYQAREIAFKLGLPGEQVKQ  176 (388)
T ss_pred             CCHHHHEEEEEEEECCCCCEEEEEECCC----CCCHHHHHHHCHHHEEEEECCCCCCC-CHHHHHHHHHHCCCCHHHHHH
T ss_conf             6612406899998647785799998887----98799986529123899975777798-999999999982999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             777766666778999
Q gi|254780747|r  178 MQDVVDSSYHWFVRL  192 (293)
Q Consensus       178 ~~~~l~~~~~~f~~~  192 (293)
                      +..++..+|..|.+.
T Consensus       177 ~~~ii~~Ly~~F~~~  191 (388)
T PRK00696        177 AVKIFMGLYKAFVEK  191 (388)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999965


No 144
>KOG1684 consensus
Probab=87.92  E-value=2.2  Score=22.41  Aligned_cols=112  Identities=12%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             EEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHHHHHH----------------
Q ss_conf             289999766623----8---69999999998618998799997588-----8888899999999----------------
Q gi|254780747|r   37 HVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGEAIFR----------------   88 (293)
Q Consensus        37 ~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~~i~~----------------   88 (293)
                      ...+|.++-|=.    +   ...+...|..-+.++.++.||+.=++     .||++....++..                
T Consensus        47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs  126 (401)
T KOG1684          47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS  126 (401)
T ss_pred             CEEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             44689946822301033888998899887540277721899916898601458657889887624895588999999999


Q ss_pred             HHHHHCC-CCCEEEEECCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9998414-78679960332332232100011-------100013013534555653021024567774
Q gi|254780747|r   89 AIQKVKN-RKPVITEVHEMAASAGYLISCAS-------NIIVAAETSLVGSIGVLFQYPYVKPFLDKL  148 (293)
Q Consensus        89 ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~a-------d~I~a~p~s~vGsiGv~~~~~~~~~ll~k~  148 (293)
                      .+..+.. .||.|+.+++....||.-++.++       +.++|-|.+.+|..-=++..+++..+..++
T Consensus       127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~l  194 (401)
T KOG1684         127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYL  194 (401)
T ss_pred             HHHHHHHHCCCEEEEEECEEECCCCCEEECCEEEEEECCCEECCCCCCCCCCCCCCCEEEHHHCCCHH
T ss_conf             99999874376378750424237764031240687531412216643332255764002253176578


No 145
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales ,  and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=87.15  E-value=1.5  Score=23.32  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE-EECCCCCCC----CCCCCCCCC
Q ss_conf             99999999861899879999758888888999999999998414786799-603323322----321000111
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASA----GYLISCASN  119 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva-~~~~~~~S~----~Y~iAs~ad  119 (293)
                      +++++|.+|.. ..+.|||+.   ||+-...|-.|||||...  +.|+|= -..+.-+--    .-|+|-.|+
T Consensus        56 ~L~d~Ih~a~g-~~~~GiviN---pgA~THtSvAlRDA~~~v--~~P~vEVHlSNvhaREeFRh~S~~a~va~  122 (144)
T TIGR01088        56 ELIDKIHEALG-QDYDGIVIN---PGAYTHTSVALRDALAAV--SLPVVEVHLSNVHAREEFRHHSYIAPVAK  122 (144)
T ss_pred             HHHHHHHHHHC-CCCCEEEEC---CCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             89999998723-886537878---731013679999999970--39868985166512664010454222035


No 146
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.88  E-value=2  Score=22.59  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=14.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2346667899998877777666667
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~  187 (293)
                      .-||+..+.+..+..+..++..+++
T Consensus       168 LDEPTs~LDp~~~~~i~~ll~~l~~  192 (288)
T PRK13643        168 LDEPTAGLDPKARIEMMQLFESIHQ  192 (288)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9588555899999999999999995


No 147
>PRK09483 response regulator; Provisional
Probab=85.89  E-value=2.8  Score=21.71  Aligned_cols=168  Identities=15%  Similarity=0.218  Sum_probs=85.5

Q ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf             9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r   41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA  117 (293)
Q Consensus        41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~  117 (293)
                      +.+-|...+.++.++.+++    ....-++++++-||.+.   -++...|++....-||+++... . +..|.   +.+.
T Consensus        27 ~~vv~~a~~~~~~l~~~~~----~~pDvvllDl~lp~~~G---l~~~~~i~~~~p~~~vivls~~-~-~~~~~~~al~~G   97 (216)
T PRK09483         27 IKVVGEASCGEDAVKWCRT----NAVDVVLMDMNMPGIGG---LEATRKILRSTPDVKIIMLTVH-T-ENPLPAKVMQAG   97 (216)
T ss_pred             CEEEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCC---HHHHHHHHHHCCCCCEEEECCC-C-CHHHHHHHHHCC
T ss_conf             5899998999999999985----59999998688989875---2377888740899857863056-6-328899999748


Q ss_pred             CCCCCC---CHHHHHHHHH-HHHCCCHHH-HHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110001---3013534555-653021024-56777420422553155211234666789999887777766666778999
Q gi|254780747|r  118 SNIIVA---AETSLVGSIG-VLFQYPYVK-PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       118 ad~I~a---~p~s~vGsiG-v~~~~~~~~-~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      |+-++.   ++..++..+- +.....++. .+...+....      ......+|+..+|+.+++.++-+.++.-   ...
T Consensus        98 a~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~LT~RE~eVl~ll~~G~s---nke  168 (216)
T PRK09483         98 AAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQ------FEPATENPFASLSERELQIMLMITKGQK---VNE  168 (216)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHH
T ss_conf             8789947999999999999998599706989999998732------3765456545689999999999987999---999


Q ss_pred             HHHCCCCCHHHHHHHHC---------CCCCCHHHHHHCCCCCC
Q ss_conf             98514999889988734---------98237889987798062
Q gi|254780747|r  193 VSESRNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDV  226 (293)
Q Consensus       193 Va~~R~~~~~~~~~~~~---------g~~~~~~~A~~~GLvD~  226 (293)
                      ||+.-+++...++....         .+.=...-|.++||||.
T Consensus       169 IA~~L~iS~~TV~~h~~~i~~KL~v~~r~el~~~A~~~gli~~  211 (216)
T PRK09483        169 ISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGLLNA  211 (216)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCH
T ss_conf             9999698999999999999998099999999999999599188


No 148
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=85.88  E-value=2.8  Score=21.71  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             CCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCHHHHHHHHHHHHH-------HC----------
Q ss_conf             778728999976662386999999999861899879999758-888888999999999998-------41----------
Q gi|254780747|r   33 DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQK-------VK----------   94 (293)
Q Consensus        33 ~~~~~i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~-SpGG~~~~~~~i~~ai~~-------~k----------   94 (293)
                      ...+.|..|.|...  +...+.+.++.+....+.+|+||++- .+||.++  ..|.+.+.+       .|          
T Consensus        84 ~s~g~iGYl~i~~~--~~~~~~~~~~~~~~~~~~~glIiDlR~N~GG~~~--~~l~~~l~~~~~~~~~~R~~~~~~~~p~  159 (266)
T cd07562          84 LSDGRIGYVHIPDM--GDDGFAEFLRDLLAEVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVTYPS  159 (266)
T ss_pred             CCCCCEEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH--HHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             57995899997878--9078999999998616887499983578985089--9999995678428994268887788865


Q ss_pred             --CCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             --4786799603323322321000111
Q gi|254780747|r   95 --NRKPVITEVHEMAASAGYLISCASN  119 (293)
Q Consensus        95 --~~kpvva~~~~~~~S~~Y~iAs~ad  119 (293)
                        -.||+++.++..++|+|=..|.+..
T Consensus       160 ~~~~gP~vvLv~~~t~S~aE~fa~~~~  186 (266)
T cd07562         160 GRWRGPVVVLVNEGSASDAEIFAYGFR  186 (266)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             467899999989998648999999998


No 149
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.86  E-value=2.7  Score=21.79  Aligned_cols=95  Identities=8%  Similarity=0.060  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999999861899879999758888888999999999998414786799603323322321000111000130135345
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS  131 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs  131 (293)
                      +.+.--...+.+|.+  ++|+=-+-|-++...+++.+.|+++++.+..+..+.+..    -.++..||+|+.=..+.+=.
T Consensus       145 qRvaiA~aL~~~P~l--liLDEPtagLDp~~~~~l~~~l~~L~~~G~Tvi~vtHdl----~~~~~~aDrvivl~~G~Iv~  218 (273)
T PRK13647        145 KRVAIAGVLAMEPDI--IVLDEPMAYLDPRGKEELTAILNRLNNEGKTVIVATHDV----DLALEWADQVVVLNAGRVVA  218 (273)
T ss_pred             HHHHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHCCEEEEEECCEEEE
T ss_conf             999999999819999--999797657999999999999999984899999994178----99999699999998999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCE
Q ss_conf             5565302102456777420422
Q gi|254780747|r  132 IGVLFQYPYVKPFLDKLGVSIK  153 (293)
Q Consensus       132 iGv~~~~~~~~~ll~k~gi~~~  153 (293)
                      -|-- +.+.-.+++++.|+.+-
T Consensus       219 ~Gtp-~~~~~~~~l~~~gl~~P  239 (273)
T PRK13647        219 QGDK-SILTDRQLLEEAGLKAP  239 (273)
T ss_pred             ECCH-HHHCCHHHHHHCCCCCC
T ss_conf             8294-79399999998699998


No 150
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.21  E-value=3.1  Score=21.41  Aligned_cols=96  Identities=8%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99999999986189987999975888888899999999999841478679960332332232100011100013013534
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG  130 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG  130 (293)
                      ++.+.--+....++++  ++|+=-+-|-++....++.+.|+++++.+..+.++.+..    -.++..||+|+.=..+.+=
T Consensus       142 kQrv~iAraL~~~P~l--LlLDEPtagLD~~~~~~i~~ll~~l~~~G~tiiivsHdl----~~v~~~aDrv~vl~~G~iv  215 (271)
T PRK13638        142 KKRVAIAGALVLQARY--LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI----DLIYEISDAVYVLRQGQIL  215 (271)
T ss_pred             HHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHHCCEEEEEECCEEE
T ss_conf             9999999999659998--998387545899999999999999997899999984888----9999969999999899899


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             5556530210245677742042
Q gi|254780747|r  131 SIGVLFQYPYVKPFLDKLGVSI  152 (293)
Q Consensus       131 siGv~~~~~~~~~ll~k~gi~~  152 (293)
                      .-|.--+.+.-.++++..|++.
T Consensus       216 a~Gtp~ev~~~~~~~~~~g~~~  237 (271)
T PRK13638        216 THGAPGEVFACTEAMEQAGLTQ  237 (271)
T ss_pred             EECCHHHHHCCHHHHHHCCCCC
T ss_conf             9868999968989999769999


No 151
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.01  E-value=3.2  Score=21.35  Aligned_cols=21  Identities=14%  Similarity=0.314  Sum_probs=8.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..++..+
T Consensus       167 EPTagLDp~~~~~i~~ll~~l  187 (285)
T PRK13636        167 EPTAGLDPMGVSEIMKLLVEM  187 (285)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             875559999999999999999


No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.97  E-value=3.3  Score=21.29  Aligned_cols=21  Identities=14%  Similarity=0.290  Sum_probs=9.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..++.++
T Consensus       163 EPTagLDp~~~~~i~~ll~~l  183 (275)
T PRK13639        163 EPTSGLDPMGASQIMKLLYDL  183 (275)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             975548999999999999999


No 153
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.62  E-value=2.4  Score=22.07  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=15.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2346667899998877777666667
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~  187 (293)
                      .-||+..+.+..++.+..++.++.+
T Consensus       200 lDEPTagLDp~~~~~i~~li~~l~~  224 (320)
T PRK13631        200 FDEPTAGLDPKGEHEMMQLILDAKA  224 (320)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             7587555998999999999999996


No 154
>KOG1255 consensus
Probab=81.17  E-value=4.3  Score=20.50  Aligned_cols=44  Identities=23%  Similarity=0.454  Sum_probs=17.0

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             999999986189987999975888888899999999999841478679960
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      +-.....|.++-...+-++.+--|    .++..|.++|.   +..|.++.+
T Consensus        83 VF~sV~eA~~~t~a~AsvIyVPpp----~Aa~aI~eaie---aEipLiVcI  126 (329)
T KOG1255          83 VFNSVAEAKKETGADASVIYVPPP----FAAAAIEEAIE---AEIPLIVCI  126 (329)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCH----HHHHHHHHHHH---CCCCEEEEE
T ss_conf             566799998740898349980782----78899999885---448679996


No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.13  E-value=4.4  Score=20.49  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=13.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             234666789999887777766666
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSY  186 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~  186 (293)
                      .-||+..+.+..++.+..++..+.
T Consensus       169 lDEPTsgLDp~~~~~i~~ll~~l~  192 (280)
T PRK13649        169 LDEPTAGLDPKGRKELMTIFKKLH  192 (280)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             848755489999999999999998


No 156
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.45  E-value=4.6  Score=20.35  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=9.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..++.++
T Consensus       171 EPTagLDp~~~~~i~~ll~~l  191 (286)
T PRK13646        171 EPTAGLDPQSKRQVMRLLKSL  191 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             874438989999999999999


No 157
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP).  CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=80.02  E-value=4.7  Score=20.26  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             CCCEEEEEEEEEEECCH-HHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             78728999976662386-99999999986189987999975-88888889999999999984147867996
Q gi|254780747|r   34 NSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITE  102 (293)
Q Consensus        34 ~~~~i~~i~i~G~I~~~-~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~  102 (293)
                      ...+|.-|..+.=..+. +++.+.+.+ -++.+|+.+||++ ..+||.+..+..|+..|...-..+.+...
T Consensus        62 gg~kIGYl~yn~F~~~~~~~L~~~f~~-fk~~gv~~LIlDLRYNgGG~v~~a~~las~i~~~~~~~~~f~~  131 (256)
T cd07561          62 GGKKVGYLVYNSFTSGYDDELNQAFAE-FKAQGVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFAT  131 (256)
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             996899999657575445999999999-9876997699981218982799999999875276757978999


No 158
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=79.96  E-value=4.8  Score=20.25  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=16.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2346667899998877777666667
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~  187 (293)
                      .-||+..+.+..++.+..++..+++
T Consensus       185 LDEPTagLDp~~~~~i~~~l~~L~~  209 (304)
T PRK13651        185 FDEPTAGLDPQGVKEILEIFDTLNK  209 (304)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             7298665898999999999999997


No 159
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=78.06  E-value=5.4  Score=19.88  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=13.2

Q ss_pred             HCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCC
Q ss_conf             51499988998873498237889987798062
Q gi|254780747|r  195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV  226 (293)
Q Consensus       195 ~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~  226 (293)
                      +++|++.+..+.+.....+.|-..++.|=+|.
T Consensus        88 ~rkG~~~~~a~~~~~~~~~~aa~mv~~G~aD~  119 (319)
T pfam01515        88 KHKGMTPEIAREIVRDPTYFAAMLVKLGEADG  119 (319)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             23899999999999766999999997789887


No 160
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.04  E-value=5.5  Score=19.88  Aligned_cols=25  Identities=12%  Similarity=0.248  Sum_probs=14.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2346667899998877777666667
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~  187 (293)
                      .-||+..+.+..++.+..++..+.+
T Consensus       169 LDEPTsgLDp~~~~~i~~ll~~l~~  193 (286)
T PRK13641        169 LDEPAAGLDPEGRKEMMQIFKDYQK  193 (286)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             7397343899999999999999996


No 161
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=77.96  E-value=3.6  Score=21.03  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHCC-----CCCCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             999999998618-----99879999758888--88899999999999841478679960
Q gi|254780747|r   52 ELIERIERISRD-----DSATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        52 ~l~~~l~~a~~d-----~~ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      .+...+++|-+.     ++|.+|-.-. .||  |+.......++.+... -++|++..-
T Consensus        54 ~i~~lv~~al~~a~i~~~~id~IAvT~-gPGL~g~L~VG~~~Ak~La~~-~~~Pli~Vn  110 (335)
T PRK09604         54 ALPPLLEEALKEAGLSLEDIDAIAVTA-GPGLVGALLVGATAAKALALA-LNKPLIGVN  110 (335)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH-CCCCEEECC
T ss_conf             999999999986599987897899947-999611399999999999998-099824112


No 162
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=77.65  E-value=5.6  Score=19.81  Aligned_cols=26  Identities=23%  Similarity=0.183  Sum_probs=11.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99975888888899999999999841
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~k   94 (293)
                      ++|+=-+.|-++...++|.+.|++++
T Consensus       172 LiLDEPTsgLD~~~~~~i~~~l~~l~  197 (252)
T CHL00131        172 AILDETDSGLDIDALKIIAEGINKLA  197 (252)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99979876699999999999999998


No 163
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=76.87  E-value=5.9  Score=19.67  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             89999766623869999999998618998799997588888889999999999984147867996033
Q gi|254780747|r   38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE  105 (293)
Q Consensus        38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~  105 (293)
                      +-++.....+.+.++..+..+.+.++ ++.+|++..-+-+-+    ......++++  ++|+..+...
T Consensus        37 ~~vv~~~~~~~~~~~~~~~~~~~~~~-~vdgli~~~~tf~~~----~~~~~~~~~~--~~Pvl~~~~~   97 (452)
T cd00578          37 VEVVDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTFGPA----KMWIAGLSEL--RKPVLLLATQ   97 (452)
T ss_pred             CCEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCH----HHHHHHHHHC--CCCEEEEECC
T ss_conf             73998884048999999999998775-997999905866877----9999999857--9989999479


No 164
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.68  E-value=6  Score=19.64  Aligned_cols=26  Identities=12%  Similarity=0.159  Sum_probs=15.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             23466678999988777776666677
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYHW  188 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~~  188 (293)
                      .-||+..+.+..+..+...+..+++.
T Consensus       168 lDEPTs~LDp~~~~~i~~~l~~L~~e  193 (287)
T PRK13637        168 LDEPTAGLDPKGRDDILEKIKALHKE  193 (287)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             83886648999999999999999985


No 165
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=75.27  E-value=6.5  Score=19.40  Aligned_cols=78  Identities=26%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             EEEEEEEEEE-CCHH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHH---------C-----------
Q ss_conf             8999976662-3869-9999999986189987999975-88888889999999999984---------1-----------
Q gi|254780747|r   38 VARIAIRGQI-EDSQ-ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV---------K-----------   94 (293)
Q Consensus        38 i~~i~i~G~I-~~~~-~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~---------k-----------   94 (293)
                      |..|.++.-. .... .+.+.+....+  +++++||++ +.+||....+..+...+..-         +           
T Consensus        61 IGYl~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~  138 (224)
T cd06567          61 IGYIRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPG  138 (224)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCC
T ss_conf             789997346884358999999998761--698799990899998899999999985699968999746788733874689


Q ss_pred             ----CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             ----47867996033233223210001
Q gi|254780747|r   95 ----NRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        95 ----~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
                          ..+|+++.+++..+|++=.+|.+
T Consensus       139 ~~~~~~~pv~vLt~~~TaSaaE~~a~~  165 (224)
T cd06567         139 GGSLYDGPLVVLVNEGSASASEIFAGA  165 (224)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             874478989999899977489999999


No 166
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=74.94  E-value=6.6  Score=19.35  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf             6999999999861899879999758888888999999999998-414786799603323
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMA  107 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~-~k~~kpvva~~~~~~  107 (293)
                      .+.+++-|++|+.||+|.+|=.-+-=.+..   |. |.++|-+ .+++|.|.+.++=.|
T Consensus       345 F~~vv~fl~~AA~DP~V~aIK~TLYR~a~~---S~-Iv~aLi~AA~nGK~VtvlVELkA  399 (678)
T pfam02503       345 FDPVVDFLRQAAADPDVLAIKQTLYRTSKD---SP-IVDALIEAAENGKQVTVLVELKA  399 (678)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEEECCCC---CH-HHHHHHHHHHCCCEEEEEEEECC
T ss_conf             127999999983799853787789852798---88-99999999982988999999733


No 167
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=73.24  E-value=7.3  Score=19.09  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             CCCEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf             98799997588--------88888999999999998414-786799603323322321000-111000130135345556
Q gi|254780747|r   65 SATALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC-ASNIIVAAETSLVGSIGV  134 (293)
Q Consensus        65 ~ik~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs-~ad~I~a~p~s~vGsiGv  134 (293)
                      .-+-|+|.+..        .|-++.-.+.+++.|+++.. +..|-+.+++.-.--+|-.+. ..|+..+..   +|-...
T Consensus         4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~---mGmlaT   80 (238)
T COG0528           4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADY---MGMLAT   80 (238)
T ss_pred             CEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHH---HHHHHH
T ss_conf             33799999421036478888879899999999999998669689999789789976789876985122468---889999


Q ss_pred             HHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             5302102456777420422553155211234666
Q gi|254780747|r  135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS  168 (293)
Q Consensus       135 ~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~  168 (293)
                      ++.....+..|+++|++..+.+.-.+....+|+.
T Consensus        81 vmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~  114 (238)
T COG0528          81 VMNALALQDALERLGVDTRVQSAIAMPQVAEPYS  114 (238)
T ss_pred             HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
T ss_conf             9999999999863587612213111766668667


No 168
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=72.78  E-value=4.9  Score=20.17  Aligned_cols=51  Identities=12%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHCCC-----CCCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99999999986189-----9879999758888--88899999999999841478679960
Q gi|254780747|r   51 QELIERIERISRDD-----SATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        51 ~~l~~~l~~a~~d~-----~ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      +.+...+++|-++.     .|.+|- ....||  |+..-....++.|.. .-++|++..-
T Consensus        58 ~~i~~lv~~aL~~a~i~~~did~IA-vT~gPGL~g~L~VG~~~AK~La~-~~~~Pli~Vn  115 (348)
T PTZ00340         58 QHILSLVQEALEEAGITLSDISLIC-YTKGPGMGAPLAVGATVAKTLSL-LWGKPLVGVN  115 (348)
T ss_pred             HHHHHHHHHHHHHCCCCHHCCCEEE-ECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEECC
T ss_conf             9999999999998599841185799-72799851658999999999999-8099835213


No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=72.74  E-value=7.5  Score=19.02  Aligned_cols=21  Identities=10%  Similarity=0.294  Sum_probs=9.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..+..+..++..+
T Consensus       171 EPTs~LDp~~~~~i~~~l~~l  191 (281)
T PRK13633        171 EPTAMLDPSGRREVVNTIKEL  191 (281)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             873438989999999999999


No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.55  E-value=7.5  Score=18.99  Aligned_cols=14  Identities=21%  Similarity=0.378  Sum_probs=5.7

Q ss_pred             CCCCCCCCCHHHHH
Q ss_conf             79806238989999
Q gi|254780747|r  221 VGLIDVVGGQEEVW  234 (293)
Q Consensus       221 ~GLvD~ig~~~~a~  234 (293)
                      .|=|-+-|+-+|+.
T Consensus       217 ~G~Iv~~Gtp~Evf  230 (269)
T PRK13648        217 KGTVYKEGTATEIF  230 (269)
T ss_pred             CCEEEEECCHHHHH
T ss_conf             99999975899987


No 171
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=72.25  E-value=7.7  Score=18.94  Aligned_cols=136  Identities=10%  Similarity=0.161  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             86999999999861899879999758888888999999999998414786799603323322321000111000130135
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +.++.++.+    +..+..-|+++++-||.+-   -++...|++.....||+.+... . +..|.+.+          =-
T Consensus        35 ~~~~~l~~~----~~~~pdlvllDi~mP~~~G---~e~l~~l~~~~p~~~vivlT~~-~-~~~~~~~a----------l~   95 (202)
T PRK09390         35 SAQAFLDAL----PGLRFGCVVTDVRMPGIDG---IELLRRLKARGSPLPVIVMTGH-G-DVPLAVEA----------MK   95 (202)
T ss_pred             CHHHHHHHH----HCCCCCEEEECCCCCCCCC---HHHHHHHHHCCCCCCEEEEEEC-C-CHHHHHHH----------HH
T ss_conf             999999997----6579799987799999896---0799998722899867999745-7-48888999----------98


Q ss_pred             HHHHHHHHCCCHHHHHHHHHH-----HCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             345556530210245677742-----042255315521123466678999988777776666677899998514999889
Q gi|254780747|r  129 VGSIGVLFQYPYVKPFLDKLG-----VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK  203 (293)
Q Consensus       129 vGsiGv~~~~~~~~~ll~k~g-----i~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~  203 (293)
                      .|..|++.......++++.+.     ............+..+.+..+|+.+++.++-+....-   -..|++.-+++...
T Consensus        96 ~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~s---nkeIA~~L~iS~~T  172 (202)
T PRK09390         96 LGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEAVAADIRARIASLSERERQVMDGLVAGLS---NKVIARDLDISPRT  172 (202)
T ss_pred             CCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC---HHHHHHHHCCCHHH
T ss_conf             294644559999999999999999715232421466788874006699899999999983896---89999997987889


Q ss_pred             HHH
Q ss_conf             988
Q gi|254780747|r  204 TLV  206 (293)
Q Consensus       204 ~~~  206 (293)
                      ++.
T Consensus       173 V~~  175 (202)
T PRK09390        173 VEV  175 (202)
T ss_pred             HHH
T ss_conf             999


No 172
>PRK05443 polyphosphate kinase; Provisional
Probab=71.95  E-value=7.8  Score=18.90  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf             6999999999861899879999758888888999999999998-414786799603323
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMA  107 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~-~k~~kpvva~~~~~~  107 (293)
                      .+.+++-|++|+.||+|.+|=.-+-=.++.   |. |.++|-+ .+++|.|.+.++=.|
T Consensus       352 F~~vv~fl~~AA~DP~V~aIK~TLYR~a~~---S~-Iv~aLi~AA~nGK~VtvlVELkA  406 (692)
T PRK05443        352 FDPVVEFLRQAAADPDVLAIKQTLYRTSKD---SP-IVDALIEAAENGKQVTVLVELKA  406 (692)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEEEECCCC---CH-HHHHHHHHHHCCCEEEEEEEECC
T ss_conf             479999999982799813898889842798---88-99999999982988999999733


No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=71.71  E-value=7.9  Score=18.87  Aligned_cols=22  Identities=14%  Similarity=0.068  Sum_probs=9.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             3466678999988777776666
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      -||+..+.+..+..+.+++.++
T Consensus       172 DEPts~LD~~~~~~i~~~l~~l  193 (265)
T PRK10575        172 DEPTSALDIAHQVDVLALVHRL  193 (265)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHH
T ss_conf             1776558999999999999999


No 174
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=71.23  E-value=8.1  Score=18.80  Aligned_cols=73  Identities=15%  Similarity=0.082  Sum_probs=48.0

Q ss_pred             EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             8999976662386999999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r   38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL  113 (293)
Q Consensus        38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~  113 (293)
                      |--.+.+|.-.+ +-....++++++.-.++-+.+-+.+.+-+....++.++.+...  .|||.+|+-...-|...|
T Consensus        31 IInnRPd~E~~~-qp~~~~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~~~--~~Pvl~~CrSG~Rs~~lw  103 (110)
T pfam04273        31 VINNRPDGEEPG-QPSNAAEQAAARAAGLAYRFIPVISGQITEADVEAFQRALAAA--EGPVLAHCRSGTRALNLY  103 (110)
T ss_pred             EEECCCCCCCCC-CCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHH
T ss_conf             853388877789-9888999999998399799964477898999999999999858--998999889987799999


No 175
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.35  E-value=8.5  Score=18.68  Aligned_cols=94  Identities=7%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEE-CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             9999999998618998799997588888889999999999984147-8679960-3323322321000111000130135
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEV-HEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~-kpvva~~-~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      ++.+.--+..+.+|.+  ++|+=-+-|-++....+|.+.|+++++. +-.+.++ +++. .    ++- ||+|+.=..+.
T Consensus       146 rQRvaIAraL~~~P~i--LilDEPTs~LD~~~~~~i~~~l~~L~~~~g~TvI~itHdl~-~----~~~-aDRiivm~~G~  217 (279)
T PRK13635        146 KQRVAIAGVLALQPDI--LILDEATSMLDPQGRREVLETVRQLKEQKGITVLSITHDLD-E----AAQ-ADRVIVMNKGE  217 (279)
T ss_pred             HHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHH-H----HHC-CCEEEEEECCE
T ss_conf             9999999999709998--99738745489899999999999999837989999976789-9----963-99899998999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             345556530210245677742042
Q gi|254780747|r  129 VGSIGVLFQYPYVKPFLDKLGVSI  152 (293)
Q Consensus       129 vGsiGv~~~~~~~~~ll~k~gi~~  152 (293)
                      +=..|.--+.+.-.+.+++.|+..
T Consensus       218 Iv~~Gtp~elf~~~~~l~~~~l~~  241 (279)
T PRK13635        218 ILEEGTPEEIFKSGHMLQEIGLDV  241 (279)
T ss_pred             EEEECCHHHHHCCHHHHHHCCCCC
T ss_conf             999869999977988999779999


No 176
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , :  The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand.  The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 .  The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain.      The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=70.07  E-value=5.6  Score=19.82  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=56.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             999758888888999999999998414--786799603323322321000111000130135345556530210245677
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD  146 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~  146 (293)
                      -||-+=+.||+   +--|..+|++..+  +.|+.+....+...  -=+.--+|=|.+.|       -+.+....++...+
T Consensus        48 ~iLl~CaaGms---tsLLv~~l~k~A~~~~~~~~i~A~~~~~~--~e~~~~~d~VlLaP-------Q~~~~~~~lk~~t~  115 (142)
T TIGR00853        48 NILLLCAAGMS---TSLLVNKLNKAAKEYGVPVKIAAVSYGAA--MEILDDADVVLLAP-------QVAYMLPDLKKETD  115 (142)
T ss_pred             EEEEEECCCCC---HHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHHCEEEEHH-------HHHHHHHHHHHHCC
T ss_conf             16888769735---47899999999984599758884057634--43353504311203-------26755799998513


Q ss_pred             HHHHCCEEEEECCCC
Q ss_conf             742042255315521
Q gi|254780747|r  147 KLGVSIKSVKSSPMK  161 (293)
Q Consensus       147 k~gi~~~~~~~g~~K  161 (293)
                      +.||++.++..-.|-
T Consensus       116 ~~Gip~~~i~~~~Yg  130 (142)
T TIGR00853       116 KKGIPVEVINGAQYG  130 (142)
T ss_pred             CCCCCEEEECCCCCE
T ss_conf             589753663870020


No 177
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=69.47  E-value=8.8  Score=18.56  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=5.8

Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             88889999999999984
Q gi|254780747|r   77 GGSAYAGEAIFRAIQKV   93 (293)
Q Consensus        77 GG~~~~~~~i~~ai~~~   93 (293)
                      |-++....++.+.|+++
T Consensus       168 gLD~~~~~~i~~li~~l  184 (255)
T PRK11231        168 YLDINHQVELMRLMREL  184 (255)
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             48999999999999999


No 178
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=69.27  E-value=8.9  Score=18.54  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=53.1

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHH----HHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCHHHH--HHHH----
Q ss_conf             99879999758888888999999----99999841478679960332332232100-0111000130135--3455----
Q gi|254780747|r   64 DSATALIVSLSSPGGSAYAGEAI----FRAIQKVKNRKPVITEVHEMAASAGYLIS-CASNIIVAAETSL--VGSI----  132 (293)
Q Consensus        64 ~~ik~ivL~i~SpGG~~~~~~~i----~~ai~~~k~~kpvva~~~~~~~S~~Y~iA-s~ad~I~a~p~s~--vGsi----  132 (293)
                      ..|+-| |-|.|.+-...|+-|-    .+|++.+|..+--++.++..-|.  -+-. ..||+||..|-+.  |--|    
T Consensus         4 ~~i~kv-LviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpAT--imTD~~~AD~vY~ePlT~e~V~~IIEKE   80 (1089)
T TIGR01369         4 TDIKKV-LVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPAT--IMTDPEMADKVYIEPLTPEAVEKIIEKE   80 (1089)
T ss_pred             CCCCEE-EEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf             888789-9966673113120230247899999987649579997588472--3388668660025254588886665316


Q ss_pred             ---HHH----HC-------CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf             ---565----30-------21024567774204225531552112346667-899998877777666667
Q gi|254780747|r  133 ---GVL----FQ-------YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE-VNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       133 ---Gv~----~~-------~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~-~s~e~~~~~~~~l~~~~~  187 (293)
                         |+.    +|       -..-++.|+|+||++-          |.|.+- ..-||||..++.++.+..
T Consensus        81 RPDgiL~t~GGQTALNlav~L~~~GVL~kYgV~vL----------GT~~eaI~kaEDRe~F~~~M~ei~~  140 (1089)
T TIGR01369        81 RPDGILPTLGGQTALNLAVELEESGVLEKYGVEVL----------GTPVEAIKKAEDRELFREAMKEIGE  140 (1089)
T ss_pred             CCCCHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEE----------CCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf             86600025760357777886620685145291785----------2342435202027999999997389


No 179
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=67.97  E-value=9.5  Score=18.37  Aligned_cols=67  Identities=4%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             CCEEEEEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf             872899997666238--6999999999861899879999758888-888999999999998414-786799
Q gi|254780747|r   35 SPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKN-RKPVIT  101 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~-~kpvva  101 (293)
                      .+.+.++.+.|.+-.  ..++.+.+..+-.+..++.|++++...- -+.++...+-...+.++. +++++.
T Consensus         6 ~d~~lVv~l~GelD~~ta~~lr~~l~~~i~~~~~~~iVvDls~v~f~DSsGl~~Ll~~~k~~~~~Gg~l~l   76 (100)
T cd06844           6 VDDYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVL   76 (100)
T ss_pred             ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999779983888999999999999738997899987688188478999999999999966998999


No 180
>pfam01220 DHquinase_II Dehydroquinase class II.
Probab=67.19  E-value=9.8  Score=18.27  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf             9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a  123 (293)
                      -++++.|.++.+  +..||++.   ||+-...+-.|+++|..+  +.|++=. +.+..+-.    --+++-.|+-.++
T Consensus        54 geiId~I~~a~~--~~dgiIiN---pga~THtS~ai~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~  124 (140)
T pfam01220        54 GELIDWIHEARG--DVDGIIIN---PAAYTHTSVALRDALAAV--GIPVIEVHLSNIHAREEFRHHSYISPVATGVIC  124 (140)
T ss_pred             HHHHHHHHHHHC--CCCEEEEC---CCHHEEHHHHHHHHHHHC--CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEE
T ss_conf             999999999754--47689985---621011026679999864--999899962781332542335641630349996


No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.84  E-value=10  Score=18.23  Aligned_cols=23  Identities=9%  Similarity=0.182  Sum_probs=10.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             34666789999887777766666
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSY  186 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~  186 (293)
                      -||+..+.+..++.+..++..++
T Consensus       169 DEPTs~LD~~~~~~i~~~l~~l~  191 (283)
T PRK13640        169 DESTSMLDPAGKEQILKLIRKLM  191 (283)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             68745489899999999999999


No 182
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=66.33  E-value=2.3  Score=22.20  Aligned_cols=78  Identities=24%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCC---CCCCCCC
Q ss_conf             3869999999998618998799997-58888888999999999998414--7867996033233223210---0011100
Q gi|254780747|r   48 EDSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLI---SCASNII  121 (293)
Q Consensus        48 ~~~~~l~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~i---As~ad~I  121 (293)
                      ++.++-.+.++++- |+|-|+|+++ |..|-..+.-.+.|.+.=+  +.  +-|++  |++..+++||++   -=.||=|
T Consensus       127 vd~dd~pe~~~k~i-d~nTKAvf~EtIgNP~~~v~Die~~a~~Ah--~~PhgvPli--VDNT~atpGYL~rPi~hGADIV  201 (434)
T TIGR01326       127 VDGDDDPEELEKAI-DENTKAVFAETIGNPALNVPDIEAVAEVAH--AHPHGVPLI--VDNTFATPGYLCRPIDHGADIV  201 (434)
T ss_pred             ECCCCCHHHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCEEE--EECCCCCCCCCCCHHHCCCCEE
T ss_conf             27888878999760-667518984012387767678589999998--678983488--7478687641006456498679


Q ss_pred             CCCHHHHHH
Q ss_conf             013013534
Q gi|254780747|r  122 VAAETSLVG  130 (293)
Q Consensus       122 ~a~p~s~vG  130 (293)
                      +-+-+=.+|
T Consensus       202 vhSaTK~iG  210 (434)
T TIGR01326       202 VHSATKYIG  210 (434)
T ss_pred             EEEECCCCC
T ss_conf             961001012


No 183
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=65.76  E-value=10  Score=18.09  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             CEEEEECCCCC-CC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--------
Q ss_conf             67996033233-22-321000111000130135345556530210245677742042255315521123466--------
Q gi|254780747|r   98 PVITEVHEMAA-SA-GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--------  167 (293)
Q Consensus        98 pvva~~~~~~~-S~-~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--------  167 (293)
                      +...+++..+. -. -||++..-|+---.|.-+..+-|    ..+..+..++-==+...++.-+.+.. .||        
T Consensus        90 v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eG----GmDIEeVa~~~PekI~~~~idp~~g~-~~~~aR~la~~  164 (387)
T COG0045          90 VNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEG----GMDIEEVAEKTPEKIVKVSVDPLTGL-RPYQARELAFK  164 (387)
T ss_pred             EEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCC----CCCHHHHHHHCHHHEEEEEECCCCCC-CHHHHHHHHHH
T ss_conf             42899974677764337999999737783799996677----95189950028345268974776687-87799999997


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6789999887777766666778999
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      -.++.+..+++..++..+|+-|.+.
T Consensus       165 lgl~~~~~~~~~~ii~~ly~~f~~~  189 (387)
T COG0045         165 LGLEGELVKQVADIIKKLYKLFVEK  189 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4998789999999999999999975


No 184
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.74  E-value=10  Score=18.09  Aligned_cols=35  Identities=9%  Similarity=0.085  Sum_probs=17.5

Q ss_pred             HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             9986189987999975888888899999999999841
Q gi|254780747|r   58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        58 ~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k   94 (293)
                      ...+.+|++  ++|+=-+.|-++....++.+.|++++
T Consensus       156 ~aLa~~P~i--liLDEPTs~LD~~~~~~l~~~l~~l~  190 (273)
T PRK13632        156 SVLALNPEI--IIFDESTSMLDPKGKREIKKIMVDLR  190 (273)
T ss_pred             HHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999719999--99807755699899999999999999


No 185
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.51  E-value=11  Score=18.06  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=10.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             34666789999887777766666
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSSY  186 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~~  186 (293)
                      -||+..+.+..+..+..++..++
T Consensus       157 DEPTs~LD~~~~~~i~~ll~~L~  179 (276)
T PRK13634        157 DEPTAGLDPKGRKEIMEMFYKLH  179 (276)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             69854279999999999999999


No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=65.10  E-value=11  Score=18.01  Aligned_cols=25  Identities=0%  Similarity=0.025  Sum_probs=9.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9997588888889999999999984
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKV   93 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~   93 (293)
                      ++|+=-+-|-++....++.+.|+++
T Consensus       165 llLDEPts~LD~~~~~~i~~~i~~l  189 (265)
T PRK10253        165 MLLDEPTTWLDISHQIDLLELLSEL  189 (265)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9981887668999999999999999


No 187
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=64.82  E-value=5.6  Score=19.78  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=30.1

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCCCC
Q ss_conf             9999986189987999975-888888899999999999841478679960332332232--100011100
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY--LISCASNII  121 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y--~iAs~ad~I  121 (293)
                      +.++++- +++.|.|+++- .+|...+.-...|.+.-++  .+  +...+++..++.-.  -+...||-+
T Consensus       134 ~~~~~~i-~~~Tkli~~Esp~NP~l~v~Di~~i~~ia~~--~g--~~~vVDNT~atP~~~~Pl~~GaDiV  198 (386)
T PRK07811        134 DAVRAAI-TPRTKLIWVETPTNPLLSITDIAAIAELAHD--AG--AKVVVDNTFASPYLQQPLALGADVV  198 (386)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHH--CC--CEEEEECCCCCCCEECHHHHCCCEE
T ss_conf             8898655-8883499997799987640585899999985--57--8188316733520425234079879


No 188
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=64.44  E-value=11  Score=17.94  Aligned_cols=65  Identities=23%  Similarity=0.377  Sum_probs=40.0

Q ss_pred             EEEEEEEEEEECCHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCHHHHH------HHHHHHHHHCCCCCEEEEE
Q ss_conf             289999766623869999999-------998618998799997588888889999------9999999841478679960
Q gi|254780747|r   37 HVARIAIRGQIEDSQELIERI-------ERISRDDSATALIVSLSSPGGSAYAGE------AIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        37 ~i~~i~i~G~I~~~~~l~~~l-------~~a~~d~~ik~ivL~i~SpGG~~~~~~------~i~~ai~~~k~~kpvva~~  103 (293)
                      +|.++.+.|...+-.+.++.+       +...+-+++.|+++    |||..+...      .+.+.|+++.+++|++--|
T Consensus         4 kIGVLaLQG~~~eH~~~l~~lg~~~~~Vr~~~dL~~idgLIi----PGGESTti~~ll~~~~L~~~l~~~~~~~Pv~GTC   79 (179)
T PRK13526          4 KVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVI----PGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTC   79 (179)
T ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEC
T ss_conf             899999628879999999987996899717888600775897----5997789999976755499999998589908861


Q ss_pred             CC
Q ss_conf             33
Q gi|254780747|r  104 HE  105 (293)
Q Consensus       104 ~~  105 (293)
                      -+
T Consensus        80 AG   81 (179)
T PRK13526         80 AG   81 (179)
T ss_pred             CE
T ss_conf             20


No 189
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.60  E-value=11  Score=17.84  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=10.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99975888888899999999999841
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~k   94 (293)
                      ++|+=-+-|-++....+|.+.+++++
T Consensus       158 LiLDEPTs~LD~~~~~~i~~~l~~L~  183 (274)
T PRK13644        158 LIFDEVTSMLDPDSGIAVLERIKKLH  183 (274)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99979866789999999999999998


No 190
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=63.14  E-value=12  Score=17.79  Aligned_cols=149  Identities=13%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCC
Q ss_conf             997666238699999999986189987999975888888899999999999841478679960332332-2321000111
Q gi|254780747|r   41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASN  119 (293)
Q Consensus        41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad  119 (293)
                      +.+-|...+.++.++.++.    ....-++++++-||.+.   -++.+.|++.....||+++....... ..-.+.+.|+
T Consensus        25 ~~vv~~~~~~~~~l~~~~~----~~pDvvllDl~lp~~~G---~~~~~~ir~~~~~~~viv~s~~~~~~~~~~a~~~Ga~   97 (204)
T PRK09958         25 IEILAELTEGGSAVQRVET----LKPDIVIIDVDIPGVNG---IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGAN   97 (204)
T ss_pred             CEEEEEECCHHHHHHHHHH----CCCCEEEEECCCCCCCC---HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCC
T ss_conf             9899997999999999874----39799999589999984---1678889872798059999724652114433526863


Q ss_pred             CCCC---CHHHHHHHHHHHHC-CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0001---30135345556530-2102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  120 IIVA---AETSLVGSIGVLFQ-YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       120 ~I~a---~p~s~vGsiGv~~~-~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      -.+.   ++..++..|-.+.. ..++...+.+.-...        -...+++..+|+.+++.++-+.+..-   ...||+
T Consensus        98 g~l~K~~~~~~l~~aI~~v~~G~~~~~~~~~~~~~~~--------~~~~~~~~~Lt~RE~eVL~ll~~G~s---nkeIA~  166 (204)
T PRK09958         98 GFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL--------TSDQQKLDSLSKQEISVMRYILDGKD---NNDIAE  166 (204)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC--------CCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHH
T ss_conf             7997899999999999999779970889999998631--------35631125689999999999986999---999998


Q ss_pred             CCCCCHHHHHHH
Q ss_conf             149998899887
Q gi|254780747|r  196 SRNIPYDKTLVL  207 (293)
Q Consensus       196 ~R~~~~~~~~~~  207 (293)
                      .-+++...++..
T Consensus       167 ~L~iS~~TV~~h  178 (204)
T PRK09958        167 KMFISNKTVSTY  178 (204)
T ss_pred             HHCCCHHHHHHH
T ss_conf             978899999999


No 191
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=62.69  E-value=12  Score=17.74  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=15.3

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999861899879999758888888999999999998414
Q gi|254780747|r   56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN   95 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~   95 (293)
                      -.+....+|.+  ++|+=-+-|-++...+.+.+.|+++++
T Consensus       156 iaral~~~P~l--llLDEPtsgLD~~~~~~i~~~i~~l~~  193 (248)
T PRK09580        156 ILQMAVLEPEL--CILDESDSGLDIDALKIVADGVNSLRD  193 (248)
T ss_pred             HHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999768998--999796223999999999999999983


No 192
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588   This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=61.66  E-value=12  Score=17.62  Aligned_cols=75  Identities=21%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCC
Q ss_conf             869999999998618998799997588888-8899999999999841478679960332---332232100011100013
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEM---AASAGYLISCASNIIVAA  124 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-~~~~~~~i~~ai~~~k~~kpvva~~~~~---~~S~~Y~iAs~ad~I~a~  124 (293)
                      +-+..+++|+++.+   +-+=|+|+--|+- ++.+..+|.+.|.+++.+.|+||=++-.   ...+.-..+-+++++=.|
T Consensus        40 D~~~tv~qi~~L~e---~GcdIVRvtVp~~e~a~A~~~I~~rL~al~~~vPLVADiHf~Ghk~~~~~~~~~~~v~kvRIN  116 (633)
T TIGR00612        40 DVDATVEQIRALEE---AGCDIVRVTVPDKESAEALEEIKERLQALGLNVPLVADIHFAGHKYKKAALAVAKGVAKVRIN  116 (633)
T ss_pred             HHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEC
T ss_conf             08999999999997---199489996088467999999999998626888748873025661468999986117825437


Q ss_pred             HH
Q ss_conf             01
Q gi|254780747|r  125 ET  126 (293)
Q Consensus       125 p~  126 (293)
                      |+
T Consensus       117 PG  118 (633)
T TIGR00612       117 PG  118 (633)
T ss_pred             CC
T ss_conf             87


No 193
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=61.31  E-value=5.1  Score=20.04  Aligned_cols=49  Identities=16%  Similarity=0.117  Sum_probs=19.3

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S  109 (293)
                      .++++- +++.|.|++.- .+|...+.-...|.+.-++    ..+.+.+++..++
T Consensus       141 ~~~~ai-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~----~g~~~vVDNTfat  190 (398)
T PRK08249        141 QIEREI-AKGCDLLYLETPTNPTLKITDIRRLSAAAHE----VGALVVVDNTFAT  190 (398)
T ss_pred             HHHHHC-CCCCEEEEEECCCCCCCEEECHHHHHHHHHH----CCCEEEEECCCCH
T ss_conf             999855-8886189984489997466647999999987----4996998477420


No 194
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=60.71  E-value=13  Score=17.52  Aligned_cols=14  Identities=14%  Similarity=0.472  Sum_probs=4.9

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             46667899998877
Q gi|254780747|r  165 SPFSEVNPKAVQMM  178 (293)
Q Consensus       165 ~p~~~~s~e~~~~~  178 (293)
                      ||+..+.+..++.+
T Consensus       157 EPt~gLD~~~~~~i  170 (230)
T TIGR03410       157 EPTEGIQPSIIKDI  170 (230)
T ss_pred             CCCCCCCHHHHHHH
T ss_conf             85226999999999


No 195
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.62  E-value=14  Score=17.40  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=15.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2346667899998877777666667
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSSYH  187 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~~~  187 (293)
                      .-||+..+.+..++.+..++..++.
T Consensus       174 lDEPTagLDp~~~~~i~~ll~~L~~  198 (289)
T PRK13645        174 LDEPTGGLDPKGEEDFINLFERLNK  198 (289)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9588764898999999999999999


No 196
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=59.21  E-value=14  Score=17.35  Aligned_cols=66  Identities=27%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf             9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a  123 (293)
                      -++++.|.++.+  +..|+++.   |||-...+-.|++++..+  +.|++=. +.+..+--    --+++-.|+-.++
T Consensus        53 gelI~~I~~a~~--~~dgiIiN---pga~ThtSial~DAl~~~--~~P~vEVHlSNi~~RE~fR~~S~is~~~~g~I~  123 (140)
T cd00466          53 GELIDWIHEARD--GADGIIIN---PGAYTHTSIALRDALAAV--SIPVIEVHISNIHAREEFRHHSVISPVATGVIA  123 (140)
T ss_pred             HHHHHHHHHHHC--CCCEEEEC---CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHCCCCCCCCCCCHHHCEEEE
T ss_conf             999999999747--57589975---612200237779999864--999899963781111452225651531118997


No 197
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=59.11  E-value=5.8  Score=19.70  Aligned_cols=49  Identities=16%  Similarity=0.085  Sum_probs=20.6

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S  109 (293)
                      .++++-+ ++.+.|++.- .+|-..+.-...|.+.-++  .+.++  .+++..++
T Consensus       150 ~~~~ai~-~~Tk~v~~EtpsNP~l~v~Di~aia~iA~~--~g~~~--vVDNTfaT  199 (406)
T PRK07810        150 QWEEALS-VPTQAVFFETPSNPMQSLVDIAAVTELAHA--AGAKV--VLDNVFAT  199 (406)
T ss_pred             HHHHHCC-CCCEEEEEECCCCCCCEECCHHHHHHHHHH--CCCEE--EEECCCCC
T ss_conf             9997558-886289984489998561167999999997--49859--99788777


No 198
>PRK06234 methionine gamma-lyase; Provisional
Probab=59.01  E-value=7.2  Score=19.10  Aligned_cols=15  Identities=27%  Similarity=0.379  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHCCEEE
Q ss_conf             245677742042255
Q gi|254780747|r  141 VKPFLDKLGVSIKSV  155 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~  155 (293)
                      ++..+.++||++..+
T Consensus       120 ~~~~l~~~Gi~~~~v  134 (399)
T PRK06234        120 LNHGLTRYGVEVTFV  134 (399)
T ss_pred             HHHHHHCCCEEEEEE
T ss_conf             998865168578862


No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=58.54  E-value=14  Score=17.28  Aligned_cols=19  Identities=11%  Similarity=0.142  Sum_probs=8.2

Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q ss_conf             4666789999887777766
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVD  183 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~  183 (293)
                      ||+..+.+..++.+..++.
T Consensus       166 EPtsgLD~~~~~~i~~ll~  184 (257)
T PRK13548        166 EPTSALDLAHQHHVLRLAR  184 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             9876689999999999999


No 200
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.85  E-value=14  Score=17.21  Aligned_cols=26  Identities=8%  Similarity=0.199  Sum_probs=12.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99975888888899999999999841
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~k   94 (293)
                      ++|+=-+.|-++....++.+.|++++
T Consensus       159 LilDEPTs~LD~~~~~~i~~~l~~l~  184 (276)
T PRK13650        159 IILDEATSMLDPEGRLELIKTIKNIR  184 (276)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99838866589999999999999999


No 201
>PRK12443 uridylate kinase; Reviewed
Probab=57.71  E-value=15  Score=17.19  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             CCEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC-CCCCCCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf             8799997588--------88888999999999998414-78679960332-33223210-00111000130135345556
Q gi|254780747|r   66 ATALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM-AASAGYLI-SCASNIIVAAETSLVGSIGV  134 (293)
Q Consensus        66 ik~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~-~~S~~Y~i-As~ad~I~a~p~s~vGsiGv  134 (293)
                      -|-|+|.+..        -|-+....+.|.+.|+.+.. +..|-..+++. -.-| +-. ...-|+..+..   +|-.+.
T Consensus         4 ykRVllKlSGEaL~g~~~~g~d~~~l~~ia~eI~~~~~~G~evaiVvGGGNi~RG-~~~~~~gidr~~aD~---iGMLaT   79 (247)
T PRK12443          4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG-HLAEEWGIDRVEADN---IGTLGT   79 (247)
T ss_pred             CCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-HHHHHCCCCCCHHHH---HHHHHH
T ss_conf             6789999738882899988879999999999999999779879999768850232-236553987310368---889999


Q ss_pred             HHCCCHHHHHH-HHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             53021024567-774204225531552112346667
Q gi|254780747|r  135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSE  169 (293)
Q Consensus       135 ~~~~~~~~~ll-~k~gi~~~~~~~g~~K~~~~p~~~  169 (293)
                      +++...+++.| ++.|++..+.++=+.....|||.+
T Consensus        80 vmNal~L~~~l~~~~g~~~rv~sai~~~~v~e~y~~  115 (247)
T PRK12443         80 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIR  115 (247)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH
T ss_conf             999999999999755994699732336745677778


No 202
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179   This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=57.17  E-value=15  Score=17.14  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCC------CCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCC
Q ss_conf             9999999998618998799997588------88888999999999998414--78679960332332
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSS------PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAAS  109 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~S------pGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S  109 (293)
                      ++..+.++....|    ++.+|+|+      |+|+..-+..+.+.|+++.+  +.||++==-+..-|
T Consensus       139 ~~~~~aid~i~Ad----AL~iHlN~~QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S  201 (349)
T TIGR02151       139 EEAQEAIDMIEAD----ALAIHLNVLQELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGIS  201 (349)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             9999999875101----33554323302557999701565389999999965289879982157998


No 203
>PRK09028 cystathionine beta-lyase; Provisional
Probab=56.59  E-value=8.5  Score=18.65  Aligned_cols=31  Identities=10%  Similarity=0.012  Sum_probs=11.4

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHH
Q ss_conf             999986189987999975-88888889999999
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIF   87 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~   87 (293)
                      .++++- +++.|.|++.- .+|...+.-...|.
T Consensus       138 ~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia  169 (394)
T PRK09028        138 GIRELI-RPNTKVLFLESPGSITMEVQDVPTLS  169 (394)
T ss_pred             HHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf             998536-87726999955899875236899999


No 204
>PRK07232 malic enzyme; Reviewed
Probab=56.32  E-value=15  Score=17.05  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             HHHHHHCCCCCC--CCCHHHHHHHHHHHCCC
Q ss_conf             889987798062--38989999999974187
Q gi|254780747|r  215 GAEAKKVGLIDV--VGGQEEVWQSLYALGVD  243 (293)
Q Consensus       215 ~~~A~~~GLvD~--ig~~~~a~~~l~~~~~~  243 (293)
                      +++.++.|++.=  ||..+...+.+.+++..
T Consensus       457 A~~~~~EGIa~PILlGr~~~I~~~a~elGL~  487 (753)
T PRK07232        457 AQEVVDEGLAKPILIGRPSVIEARIKKLGLR  487 (753)
T ss_pred             HHHHHHCCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf             9999976986258856999999999976999


No 205
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=56.03  E-value=16  Score=17.02  Aligned_cols=66  Identities=18%  Similarity=0.324  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCCC----CCCCCCCCCCCC
Q ss_conf             9999999998618998799997588888889999999999984147867996-033233223----210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAG----YLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~~----Y~iAs~ad~I~a  123 (293)
                      -++++.|.++.+  +..||++.   |||-...+-.|+++|..+  +.|++=. +.+..+-..    -+++..|+-+++
T Consensus        55 gelId~I~~a~~--~~~giIiN---pga~THtSiAl~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~  125 (148)
T PRK13015         55 GQLIDWIHAARG--DVAGIVIN---PAAYTHTSVAIRDALAAL--ELPVIEVHISNVHAREAFRHHSYVSAIADGVIC  125 (148)
T ss_pred             HHHHHHHHHHHC--CCCEEEEC---CCCCEEEHHHHHHHHHHC--CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEE
T ss_conf             999999999860--28089973---731133106589999874--998899961782433664443655752649997


No 206
>PRK07582 cystathionine gamma-lyase; Validated
Probab=55.98  E-value=8.6  Score=18.62  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=23.0

Q ss_pred             CCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9987999975-8888888999999999998414786799603323322
Q gi|254780747|r   64 DSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        64 ~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      ++.|.|+++- .+|...+.-.+.|.+.-+   + ..+.+.+++..++.
T Consensus       134 ~~tklv~~EspsNP~l~v~Di~~ia~~A~---~-~gi~~vVDNT~atP  177 (370)
T PRK07582        134 GAADLVLAETPSNPGLDVVDLARLARACH---A-AGALLVVDNTTATP  177 (370)
T ss_pred             CCCCEEEEECCCCCCCEEECCHHHHHHHH---H-CCCEEEEECCCCCH
T ss_conf             57738999779998865335388899998---7-69969998898406


No 207
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.38  E-value=16  Score=16.95  Aligned_cols=66  Identities=26%  Similarity=0.378  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf             9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a  123 (293)
                      -++++.|.++.++  ..||++.   ||+-...+-.|++++..+  +.|++=. +.+..+--    .-+++-.|+-+++
T Consensus        55 gelI~~Iq~a~~~--~dgiIiN---pga~THtS~al~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~  125 (143)
T PRK05395         55 GELIDRIHEARDD--VDGIIIN---PGAYTHTSVALRDALAAV--SIPVVEVHLSNIHAREEFRHHSYISDVAVGVIC  125 (143)
T ss_pred             HHHHHHHHHHHHC--CCEEEEC---CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHCCCHHHCCCCCHHCEEEEE
T ss_conf             9999999998633--7579973---621332448899899874--998899964891330530010543401338995


No 208
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=55.01  E-value=16  Score=16.92  Aligned_cols=25  Identities=4%  Similarity=0.187  Sum_probs=9.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9997588888889999999999984
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKV   93 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~   93 (293)
                      ++|+=-+-|-++....++.+.|+++
T Consensus       177 LlLDEPts~LD~~~~~~i~~~l~~l  201 (273)
T PRK13547        177 LLLDEPTAALDLAHQHRLLDTVRRL  201 (273)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9972874448999999999999999


No 209
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=54.78  E-value=16  Score=16.89  Aligned_cols=52  Identities=10%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             999999999861899879999758888888999999999998414786799603
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH  104 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~  104 (293)
                      ++-+.-.+....++.+  ++++=-+.|-++...+++.+.|+++++.+..+..+.
T Consensus       150 ~QRvaiAral~~~p~v--lllDEPT~~LD~~~~~~v~~ll~~l~~~G~tii~vt  201 (648)
T PRK10535        150 QQRVSIARALMNGGQV--ILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT  201 (648)
T ss_pred             HHHHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             9999999999728989--995688555799999999999999997799999976


No 210
>PRK08114 cystathionine beta-lyase; Provisional
Probab=53.49  E-value=17  Score=16.76  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCCCCC
Q ss_conf             9999986189987999975-888888899999999999841478679960332332232--1000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY--LISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y--~iAs~ad~I~  122 (293)
                      +.++++.+ ++.|.|++.- .+|...+.....|.+.-++.  +.++++.+++..++.-+  -+...||-++
T Consensus       138 ~~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~a~~~--~~~~~~vvDNTfatP~~~~Pl~~GaDivi  205 (395)
T PRK08114        138 ADIAKLIQ-PNTKVVFLESPGSITMEVHDIPAIVAAVRSV--APDAVIMIDNTWAAGVLFKALDFGIDISI  205 (395)
T ss_pred             HHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf             99997468-7754999944898665226799999999860--56868997188788765544466674999


No 211
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=52.87  E-value=17  Score=16.70  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             CCEEEEEEEEEEECC-----------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             872899997666238-----------------------699999999986189987999975888888899999999999
Q gi|254780747|r   35 SPHVARIAIRGQIED-----------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~-----------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~   91 (293)
                      ..+++.+...|.+.-                       ..+..+.+..+.+|+..+.+.|+++++.    -.+.-.++++
T Consensus       154 ~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~----~~r~fl~~a~  229 (598)
T COG1042         154 GGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVK----DGRKFLNAAR  229 (598)
T ss_pred             CCCEEEEEECHHHHHHCCCHHHHCCCCEEEEEEECCHHHCCCHHHHHHHHHCCCCEEEEEEECCCH----HHHHHHHHHH
T ss_conf             887379995257887616523426875369996142543384466777752765307999842544----2799988999


Q ss_pred             HHCCCCCEEEEECCCCCCCC
Q ss_conf             84147867996033233223
Q gi|254780747|r   92 KVKNRKPVITEVHEMAASAG  111 (293)
Q Consensus        92 ~~k~~kpvva~~~~~~~S~~  111 (293)
                      .+..+||+++.-.+....++
T Consensus       230 ~~~~~kpii~lk~gr~~~~a  249 (598)
T COG1042         230 AAERKKPIIALKAGRSEAGA  249 (598)
T ss_pred             HHHCCCCEEEEECCCCHHHH
T ss_conf             87357877999634787888


No 212
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.83  E-value=17  Score=16.70  Aligned_cols=12  Identities=33%  Similarity=0.437  Sum_probs=4.0

Q ss_pred             CCCCCCCCHHHH
Q ss_conf             980623898999
Q gi|254780747|r  222 GLIDVVGGQEEV  233 (293)
Q Consensus       222 GLvD~ig~~~~a  233 (293)
                      |=|=+.|+.++.
T Consensus       213 G~Iv~~G~~~eL  224 (229)
T cd03254         213 GKIIEEGTHDEL  224 (229)
T ss_pred             CEEEEECCHHHH
T ss_conf             999998887999


No 213
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.79  E-value=17  Score=16.69  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=9.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..+..+..++..+
T Consensus       163 EPtagLDp~~~~~i~~~l~~l  183 (277)
T PRK13652        163 EPTAGLDPQGVKELFDFLNAL  183 (277)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             974548999999999999999


No 214
>PRK07050 cystathionine beta-lyase; Provisional
Probab=52.58  E-value=11  Score=17.97  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .++++- +++.|.|+++- .+|...+.-...|.+.-+    ++.+...+++..++.
T Consensus       142 ~~~~~i-~~~Tkli~~Esp~NP~l~v~Di~~ia~~A~----~~g~~~vVDNT~atP  192 (394)
T PRK07050        142 GIADLI-QPNTRLIWLEAPGSVTMEVPDVPAITAAAR----ARGVVTAIDNTWSAG  192 (394)
T ss_pred             HHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHH----HCCCEEEEECCCCCC
T ss_conf             998436-866449998448987625437299999998----759869985786686


No 215
>PRK06767 methionine gamma-lyase; Provisional
Probab=52.42  E-value=11  Score=17.92  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=20.8

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .++++.+ ++.|.|+++- .+|-..+.-.+.|.+.-    +++.+.+.+++..++.
T Consensus       138 ~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~A----~~~g~~~vvDNT~atP  188 (386)
T PRK06767        138 DIENKIR-PNTKLIFVETPINPTMKLIDLKQVIRVA----KRNGLLVIVDNTFCSP  188 (386)
T ss_pred             HHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHH----HHCCCEEEEECCCCCC
T ss_conf             9997568-8825999977999876712799999986----0067349974576422


No 216
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.05  E-value=18  Score=16.62  Aligned_cols=153  Identities=13%  Similarity=0.163  Sum_probs=67.4

Q ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCCCEEEE----ECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf             9976662386999999999861899879999----75888888--89999999999984147867996033233223210
Q gi|254780747|r   41 IAIRGQIEDSQELIERIERISRDDSATALIV----SLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI  114 (293)
Q Consensus        41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL----~i~SpGG~--~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i  114 (293)
                      .+++--.++.+.+.+.+.++.++-.+ +|+=    -.|+-+..  ...+..+++.+     +-||+-.++....|.. ..
T Consensus        56 rNLD~~mm~~~~v~~~f~~~~~~adi-~vIEGVMGLfDG~~~~~~~gSTA~lAk~l-----~~PVvLVid~~~~s~S-~A  128 (451)
T COG1797          56 RNLDSWMMGEEGVRALFARAAADADI-AVIEGVMGLFDGRGSATDTGSTADLAKLL-----GAPVVLVVDASGLSRS-VA  128 (451)
T ss_pred             CCCCHHHCCHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCCCCCCHHHHHHHH-----CCCEEEEEECCCHHHH-HH
T ss_conf             77765446998999999986278987-99961230236887776777799999985-----9998999957522578-99


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCH-------HHHHHHH-HHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf             00111000130135345556530210-------2456777-4204225531552112346667---89999887777766
Q gi|254780747|r  115 SCASNIIVAAETSLVGSIGVLFQYPY-------VKPFLDK-LGVSIKSVKSSPMKAEPSPFSE---VNPKAVQMMQDVVD  183 (293)
Q Consensus       115 As~ad~I~a~p~s~vGsiGv~~~~~~-------~~~ll~k-~gi~~~~~~~g~~K~~~~p~~~---~s~e~~~~~~~~l~  183 (293)
                      |..--.---.|.  +..-||+.+...       .++.+++ .||.+--+-- ..++.-=|.+.   ....++..    ++
T Consensus       129 Aiv~G~~~fdp~--v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lp-r~~~l~lp~RHLGLV~a~E~~~----~~  201 (451)
T COG1797         129 AIVKGFKHFDPD--VNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLP-RDDDLELPSRHLGLVPASERLE----LE  201 (451)
T ss_pred             HHHHHHHHCCCC--CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCCCCCCCCCCCCHHHHH----HH
T ss_conf             999889861998--8257899724777889999998755327985798742-7855678541326534303444----89


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf             66677899998514999889988734
Q gi|254780747|r  184 SSYHWFVRLVSESRNIPYDKTLVLSD  209 (293)
Q Consensus       184 ~~~~~f~~~Va~~R~~~~~~~~~~~~  209 (293)
                      ..++.+.+.|++  .++.+++.+++.
T Consensus       202 ~~~~~~a~~v~~--~vDld~l~~ia~  225 (451)
T COG1797         202 AKLEALAEVVEK--HVDLDALLEIAS  225 (451)
T ss_pred             HHHHHHHHHHHH--HCCHHHHHHHHH
T ss_conf             999999999986--078988999874


No 217
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.04  E-value=18  Score=16.62  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHCCCCC-CEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEE-CCCC---CCCCCCCCCCC--CCC
Q ss_conf             69999999998618998-799997588888889-9999999999841478679960-3323---32232100011--100
Q gi|254780747|r   50 SQELIERIERISRDDSA-TALIVSLSSPGGSAY-AGEAIFRAIQKVKNRKPVITEV-HEMA---ASAGYLISCAS--NII  121 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~i-k~ivL~i~SpGG~~~-~~~~i~~ai~~~k~~kpvva~~-~~~~---~S~~Y~iAs~a--d~I  121 (293)
                      .+.|.++|+.|.+--.- ++|++.-..+-|-.- -.+.+.+...+ +-+.||+..- +++.   -|.||-+|..+  +++
T Consensus        83 ekKL~~aI~ea~~~~~P~kaIfV~sTC~~glIGDDI~aV~~~~~~-~~gipVIpv~~~GF~g~s~~~G~~~a~~al~~~v  161 (421)
T cd01976          83 DKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASK-ELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHI  161 (421)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999999857973089999237378655689999999877-5299889986898577523068899999999984


Q ss_pred             CC-------CHH--HHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf             01-------301--353455565302102456777420422553155
Q gi|254780747|r  122 VA-------AET--SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP  159 (293)
Q Consensus       122 ~a-------~p~--s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~  159 (293)
                      .-       .|.  .++|-..+....+-.+.+|+++||++...-+|+
T Consensus       162 v~~~~~~~~~~~~iNiige~ni~gd~~~i~~lL~~mGi~V~~~~tgd  208 (421)
T cd01976         162 LGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGD  208 (421)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf             16688778898417997556676329999999998398379998089


No 218
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.77  E-value=18  Score=16.59  Aligned_cols=52  Identities=12%  Similarity=0.075  Sum_probs=22.2

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .+.++++- +++.+.|++.- .+|-..+.-...|.+.-+   +. .+.+.+++..++.
T Consensus       145 ~~~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~---~~-g~~~vVDNTfatP  197 (436)
T PRK07812        145 LDSWRAAV-RPNTKAFFAETISNPQIDILDIPGVAEVAH---EA-GVPLIVDNTIATP  197 (436)
T ss_pred             HHHHHHHC-CCCCEEEEEECCCCCCEECCCHHHHHHHHH---HC-CCEEEEECCCCCC
T ss_conf             99999745-867439999648998605236699999999---85-9929962686462


No 219
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=51.59  E-value=18  Score=16.57  Aligned_cols=16  Identities=19%  Similarity=0.077  Sum_probs=6.8

Q ss_pred             HCCCCCCCCCHHHHHH
Q ss_conf             7798062389899999
Q gi|254780747|r  220 KVGLIDVVGGQEEVWQ  235 (293)
Q Consensus       220 ~~GLvD~ig~~~~a~~  235 (293)
                      +.|=|=+.|+.++.++
T Consensus       232 ~~G~Ive~Gth~ELm~  247 (282)
T cd03291         232 HEGSSYFYGTFSELQS  247 (282)
T ss_pred             ECCEEEEECCHHHHHH
T ss_conf             8988999748899863


No 220
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.32  E-value=12  Score=17.71  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=22.0

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .+.++++. +++.+.|++.- .+|...+.-...|.+.-+   + ..+...+++..++.
T Consensus       145 ~~~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP  197 (437)
T PRK05613        145 PESWQAAV-QPNTKAFFGETFANPQADVLDIPAVAEVAH---R-NQVPLIIDNTIATA  197 (437)
T ss_pred             HHHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH---H-CCCEEEECCCCCCH
T ss_conf             99999737-878559999879998653357999999998---7-69839951665203


No 221
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.71  E-value=9.5  Score=18.35  Aligned_cols=43  Identities=23%  Similarity=0.244  Sum_probs=16.1

Q ss_pred             CCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9987999975-8888888999999999998414786799603323322
Q gi|254780747|r   64 DSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        64 ~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      ++.+.|++.- .+|-..+.-...|.+.-+   + ..+.+.+++..++.
T Consensus       148 ~~Tkli~~EsPsNP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP  191 (431)
T PRK08248        148 DKTKALFAETIGNPKGDVLDIEAVADIAH---R-HHIPLIVDNTFASP  191 (431)
T ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHH---H-CCCEEEEECCCCCH
T ss_conf             77459996048999874227899999997---7-69859986675303


No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=50.63  E-value=19  Score=16.48  Aligned_cols=74  Identities=11%  Similarity=0.149  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf             69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL  128 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~  128 (293)
                      .++.+.-....+.++++  ++|+=-+-+-++...+++.+.++++++.+..+.++.+.-    .++...||+++. ..+.+
T Consensus       150 ~kQrv~ia~al~~~p~l--lilDEPTa~Ld~~~~~~l~~~l~~l~~~g~tii~isH~l----~~v~~~~Drv~vl~~G~i  223 (510)
T PRK09700        150 HKQMLEIAKTLMLDAKV--IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL----AEIRRICDRYTVMKDGSS  223 (510)
T ss_pred             HHHHHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH----HHHHHHCCEEEECCCCCE
T ss_conf             99999999999859884--998788566686789999999888887287179995236----778864886997149819


Q ss_pred             H
Q ss_conf             3
Q gi|254780747|r  129 V  129 (293)
Q Consensus       129 v  129 (293)
                      +
T Consensus       224 v  224 (510)
T PRK09700        224 V  224 (510)
T ss_pred             E
T ss_conf             9


No 223
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=50.59  E-value=11  Score=18.06  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~  122 (293)
                      +.++++. +++.+.|+++- .+|...+.-...|++.-+    .+.+...+++..++.-+.  +...+|-++
T Consensus       116 ~~~~~~i-~~~t~li~~EspsNP~l~v~Di~~i~~~A~----~~g~~~vvDNT~atp~~~~Pl~~GaDivv  181 (369)
T cd00614         116 EALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELAH----EHGALLVVDNTFATPYLQRPLELGADIVV  181 (369)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEECCCHHHHHHHH----HCCEEEEEECCCCCHHCCCHHHHCCCEEE
T ss_conf             8899763-878508999658999706227299999997----66717997477431201585774896899


No 224
>PRK12862 malic enzyme; Reviewed
Probab=50.57  E-value=19  Score=16.47  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             CCEEEEEEEEEEECCHH-HHH-------------HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             87289999766623869-999-------------9999986189987999975888888899999999999841478679
Q gi|254780747|r   35 SPHVARIAIRGQIEDSQ-ELI-------------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI  100 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~~-~l~-------------~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvv  100 (293)
                      ..+|.+.+-+|.|...+ +..             +.|..|.++-   -|+|-+..| |.+.     .+.++.. +++|++
T Consensus       218 ~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gA---Dvfig~S~~-~~~~-----~e~v~~M-a~~piv  287 (761)
T PRK12862        218 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGA---DVFLGLSAA-GVLK-----PEMVKKM-APRPLI  287 (761)
T ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCC---CEEEECCCC-CCCC-----HHHHHHH-CCCCEE
T ss_conf             10179994678777887743079999996507966599996689---889980689-9999-----9999852-737778


Q ss_pred             EEECCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             96033233223210001--1100013
Q gi|254780747|r  101 TEVHEMAASAGYLISCA--SNIIVAA  124 (293)
Q Consensus       101 a~~~~~~~S~~Y~iAs~--ad~I~a~  124 (293)
                      -.+-+------|..|-.  .|.|++.
T Consensus       288 falANP~PEI~p~~a~~~r~~~i~aT  313 (761)
T PRK12862        288 LALANPTPEILPEEARAVRPDAIIAT  313 (761)
T ss_pred             EECCCCCCCCCHHHHHHHCCCEEEEC
T ss_conf             62589898759999987446279834


No 225
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.21  E-value=14  Score=17.28  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=24.1

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +.++++- +++.+.|++.- .+|...+.-...|.+.-++  .+  +.+.+++..++.
T Consensus       139 ~~~~~~i-~~~T~lv~~EspsNP~l~v~Di~~ia~iA~~--~g--~~~vVDNT~atP  190 (426)
T PRK05994        139 ASFEAAI-TPRTKAIFIESIANPGGTITDIEAIAEVAHR--AG--LPLIVDNTLASP  190 (426)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHH--CC--CEEEEECCCCHH
T ss_conf             8899736-8875499998789988723478999999997--19--917863565204


No 226
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=50.20  E-value=9.8  Score=18.26  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHCCEEE
Q ss_conf             245677742042255
Q gi|254780747|r  141 VKPFLDKLGVSIKSV  155 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~  155 (293)
                      ++.++.++||++..+
T Consensus       121 ~~~~l~~~Gi~~~~v  135 (397)
T PRK07504        121 VETLLPRYGIESTLV  135 (397)
T ss_pred             HHHHHHCCCEEEEEE
T ss_conf             999986078589987


No 227
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=50.15  E-value=19  Score=16.43  Aligned_cols=72  Identities=7%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             699999999986189987999975888888899999999999841478-6799603323322321000111000130135
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +++.+.--+..+.++.+  ++|+=-+-|-++....++.+.|+++++.+ -|+...+++.     ..+..||+|++=..+-
T Consensus       143 qrQRV~IARALaq~P~I--LLLDEPTs~LDi~~q~ell~lLr~L~~~G~TVI~vtHDL~-----lA~~~cDrVivl~~Gr  215 (409)
T PRK09536        143 ERQRVLLARALAQATPV--LLLDEPTASLDINHQIRTLELVRDLADDGKTVVAAIHDLN-----LAARYCDELVLLADGR  215 (409)
T ss_pred             HHHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHCCEEEEEECCE
T ss_conf             99999999999679998--9995876679999999999999999858999999956899-----9998699999998998


No 228
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=50.07  E-value=19  Score=16.42  Aligned_cols=148  Identities=12%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf             7666238699999999986189987999975888888899999999999841478679960332332-232100011100
Q gi|254780747|r   43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASNII  121 (293)
Q Consensus        43 i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad~I  121 (293)
                      +-|.-.+.++.++.++..    ...-++++++-||++..   ++...|++.....|++++....... ..-.+.+.|+-.
T Consensus        31 vv~~a~~~~~~~~~l~~~----~~DvvllD~~lp~~~g~---~~i~~i~~~~p~~~ilvls~~~~~~~~~~a~~~Ga~g~  103 (210)
T PRK09935         31 VVLKTDDSRITIDYLRTY----PVDLVILDIELPGTDGF---TLLKRIKQIQETVKVLFLSSKSECFYAGRAIRAGANGF  103 (210)
T ss_pred             EEEEECCHHHHHHHHHHC----CCCEEEECCCCCCCCCC---CHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             999989999999999747----99999988999998864---05678987389970899717672999999996687768


Q ss_pred             CC---CHHHHHHHHHHHHCC-CHH-HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             01---301353455565302-102-4567774204225531552112346667899998877777666667789999851
Q gi|254780747|r  122 VA---AETSLVGSIGVLFQY-PYV-KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES  196 (293)
Q Consensus       122 ~a---~p~s~vGsiGv~~~~-~~~-~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~  196 (293)
                      +.   ++..+...+-.+..+ .++ ...++.+.       ........+...++|+.+++.++-+.++.-   ...||+.
T Consensus       104 l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~Lt~RE~eVL~ll~~G~s---nkeIA~~  173 (210)
T PRK09935        104 VSKRKDLNDIYNAVQMILSGYSFFPSETLNFIK-------SNKCSKGSSTDMPLSNREVTVLRYLANGLS---NKEIAEQ  173 (210)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-------HCCCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHH
T ss_conf             867899999999999998599536989999987-------343666655678999899999999986999---9999989


Q ss_pred             CCCCHHHHHHH
Q ss_conf             49998899887
Q gi|254780747|r  197 RNIPYDKTLVL  207 (293)
Q Consensus       197 R~~~~~~~~~~  207 (293)
                      -+++...++..
T Consensus       174 L~iS~~TV~~h  184 (210)
T PRK09935        174 LLLSNKTISAH  184 (210)
T ss_pred             HCCCHHHHHHH
T ss_conf             49889999999


No 229
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=49.69  E-value=20  Score=16.39  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf             869999999998618998799997588888889999999999984147867996033233223210001110001-3013
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETS  127 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s  127 (293)
                      +.++.+.-......++++  ++|+=-+-+-++...+++.+.|+++++++..+.++.+.-    ..+...||+++. ..+-
T Consensus       144 G~kQrv~ia~aL~~~p~l--liLDEPts~LD~~~~~~l~~~l~~l~~~G~til~isH~l----~~~~~~~Drv~vl~~G~  217 (501)
T PRK11288        144 GQRQMVEIAKALMRNARV--IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM----EEIFALCDAITVFRDGR  217 (501)
T ss_pred             HHHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCH----HHHHHHCCEEEEEECCE
T ss_conf             999999999998609989--996587456898999999889999987276126513328----99997588789711885


Q ss_pred             HHH
Q ss_conf             534
Q gi|254780747|r  128 LVG  130 (293)
Q Consensus       128 ~vG  130 (293)
                      ++.
T Consensus       218 iv~  220 (501)
T PRK11288        218 YVA  220 (501)
T ss_pred             EEE
T ss_conf             997


No 230
>PRK07671 cystathionine beta-lyase; Provisional
Probab=49.59  E-value=13  Score=17.51  Aligned_cols=62  Identities=21%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321---000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I~  122 (293)
                      +.++++- +++.|.|++.- .+|...+.-...|.+.-++    ..+...+++..++. |+   +...||-++
T Consensus       125 ~~~~~ai-~~~Tklv~~EspsNP~l~v~Di~~ia~iA~~----~g~~~vVDNT~atP-~~~~Pl~~GaDivv  190 (377)
T PRK07671        125 EEVEEAI-RPNTKAIYVETPTNPLLKITDIKKISTLAKE----KGLLTIVDNTFMTP-YWQSPISLGADIVL  190 (377)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHHH----CCCEEEECCCCCCC-CCCCHHHHCCCEEE
T ss_conf             8899647-8884499997899988750167999999998----29969851764220-22787772887899


No 231
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=49.51  E-value=20  Score=16.37  Aligned_cols=12  Identities=25%  Similarity=0.501  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             245677742042
Q gi|254780747|r  141 VKPFLDKLGVSI  152 (293)
Q Consensus       141 ~~~ll~k~gi~~  152 (293)
                      ..++++++|+..
T Consensus       123 ~~~~l~~vgL~~  134 (248)
T PRK11264        123 ARELLAKVGLAG  134 (248)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999999859951


No 232
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.15  E-value=20  Score=16.33  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |++..+....+.+++++.++|+.-.|-+.
T Consensus        43 ~pdgiiL---S~GPg~P~~~~~~~~~i~~~~~~iPiLGIClG~   82 (192)
T PRK05670         43 APDAIVL---SPGPGTPAEAGISLELIREFAGKVPILGVCLGH   82 (192)
T ss_pred             CCCEEEE---CCCCCCHHHCCCHHHHHHHHCCCCCEEEEEHHH
T ss_conf             9898999---999999366055499999734699789984778


No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=48.86  E-value=20  Score=16.31  Aligned_cols=21  Identities=5%  Similarity=0.251  Sum_probs=10.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..+++.+
T Consensus       156 EPt~gLD~~~~~~l~~~i~~l  176 (245)
T PRK03695        156 EPMNSLDVAQQSALDRLLSEL  176 (245)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             876678999999999999999


No 234
>PRK08064 cystathionine beta-lyase; Provisional
Probab=48.61  E-value=8.9  Score=18.54  Aligned_cols=50  Identities=10%  Similarity=0.056  Sum_probs=27.1

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .++++- +++.+.|+++- .+|-..+.-.+.|.+.-+    ++.+...+++..++.
T Consensus       130 ~~~~~i-~~~Tklv~~EspsNP~l~v~Di~~i~~iA~----~~g~~~vVDNT~atP  180 (390)
T PRK08064        130 EVAQNI-KPNTKLFYVETPSNPLLKVTDIRGVVKLAK----AHGCLTFVDNTFLTP  180 (390)
T ss_pred             HHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHH----HCCCEEEEECCCCCC
T ss_conf             799747-888459999789998874127199999998----839969973773350


No 235
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=48.57  E-value=14  Score=17.35  Aligned_cols=52  Identities=17%  Similarity=0.198  Sum_probs=25.7

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .+.++++- +++.+.|+++- .+|-..+.-...|.+.-+    ...+...+++..++.
T Consensus       127 ~~~~~~~i-~~~T~li~~EspsNP~l~v~Di~~ia~iA~----~~gi~~vVDNT~atP  179 (381)
T pfam01053       127 LDALEAAI-KPNTKAVFLETPTNPLLKVVDIEAIAKIAK----KHGALVVVDNTFASP  179 (381)
T ss_pred             HHHHHHHC-CCCCEEEEEECCCCCCEEECCCHHHHHHHH----HCCCEEEEECCCCHH
T ss_conf             67899755-888429999748998605126099999986----457359987886005


No 236
>PRK07503 methionine gamma-lyase; Provisional
Probab=48.15  E-value=11  Score=17.92  Aligned_cols=50  Identities=8%  Similarity=0.121  Sum_probs=20.2

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .++++-+ ++.|.|+++- .+|...+.-...|.+.-+   + +.+...+++..++.
T Consensus       142 ~~~~ai~-~~Tkli~~Etp~NP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP  192 (403)
T PRK07503        142 ALKAAIS-EKTRMIYFETPANPNMQLVDIAAVVEAAR---G-HDALVVVDNTYCTP  192 (403)
T ss_pred             HHHHHCC-CCCEEEEEECCCCCCCEEECHHHHHHHHH---H-CCCEEEEECCCCCC
T ss_conf             9997518-67329999527999866305799999998---6-58859983675451


No 237
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=48.08  E-value=21  Score=16.23  Aligned_cols=54  Identities=20%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCC
Q ss_conf             869999999998618998799997588888889999999999984-1478679960332
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEM  106 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~-k~~kpvva~~~~~  106 (293)
                      +.+.+++-|++|+.||+|-+|=..+--.|+..-    |.+|+-+. .++|.|++.++=.
T Consensus       353 SF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSp----IV~ALi~AA~nGKqVtvlVELk  407 (696)
T COG0855         353 SFEPVVEFLRQAAADPDVLAIKQTLYRTSKDSP----IVRALIDAAENGKQVTVLVELK  407 (696)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCH----HHHHHHHHHHCCCEEEEEEEEH
T ss_conf             128999999986149985898877875289987----9999999998098689999972


No 238
>TIGR02886 spore_II_AA anti-sigma F factor antagonist; InterPro: IPR014237   This represents the anti-sigma F factor antagonist, also known as stage II sporulation protein AA. This protein is universally conserved in the endospore-forming bacteria, all of which belong to the Firmcutes.; GO: 0045152 antisigma factor binding, 0006355 regulation of transcription DNA-dependent, 0030435 sporulation.
Probab=48.06  E-value=21  Score=16.23  Aligned_cols=46  Identities=20%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CCEEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEEC------CCCCCCH
Q ss_conf             87289999766623--8699999999986189987999975------8888888
Q gi|254780747|r   35 SPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSL------SSPGGSA   80 (293)
Q Consensus        35 ~~~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i------~SpGG~~   80 (293)
                      .+.+++|.|.|.+-  +.+.+.+.++.+-+...|+-++|++      ||-|-++
T Consensus         6 ~~~~L~Vrl~GELDHH~aE~~R~~i~~~i~~~~~~~~ilnL~~vtFMDSSGlGV   59 (106)
T TIGR02886         6 KGDVLIVRLSGELDHHTAEEVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGV   59 (106)
T ss_pred             ECCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCE
T ss_conf             188899998610044678999999998985079836898627764786512210


No 239
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=47.99  E-value=15  Score=17.07  Aligned_cols=63  Identities=5%  Similarity=0.101  Sum_probs=30.0

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~  122 (293)
                      +.++++- .++.|.|++.- .+|...+.-...|.+.-+   + ..+.+.+++..++.-+.  +...+|=++
T Consensus       129 ~~~~~~i-~~~Tkli~~EspsNP~l~v~Di~~i~~~A~---~-~g~~~vvDNT~atP~~~~Pl~~GaDivv  194 (388)
T PRK08861        129 AALDAAL-AKKPKLILLETPSNPLVRVVDIAEVCQKAK---Q-VGALVAVDNTFLTPVLQKPLELGADFVI  194 (388)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHH---H-CCCEEEEECCCCHHHHCCCHHCCCCEEE
T ss_conf             7899734-878539998448999836656599999998---7-3995999788512530372103887899


No 240
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.48  E-value=21  Score=16.17  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=9.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             4666789999887777766666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSSY  186 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~~  186 (293)
                      ||+..+.+..+..+..++..+.
T Consensus       166 EPTs~LD~~~~~~i~~ll~~L~  187 (277)
T PRK13642        166 ESTSMLDPTGRSEIMRVIHEIK  187 (277)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             8876589899999999999999


No 241
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=46.84  E-value=22  Score=16.11  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=36.0

Q ss_pred             CCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             987999975-8888888999999999998414786799603323322321000111000130135345556
Q gi|254780747|r   65 SATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV  134 (293)
Q Consensus        65 ~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv  134 (293)
                      .|..|++=- ...|+...-.....-....+..+-|.++ ++..|+||.--+..+++.|-+-...++--.|+
T Consensus        53 ~Id~vi~G~~~~~g~~~~~~aR~~~l~aGlp~~vpa~t-Vn~~CaSG~~Ai~~A~~~I~sG~~dvvlAgGv  122 (394)
T PRK06445         53 EIGDVITGCALQVGENWLYGGRHVVLLAKLPYTIPAMH-VDRQCASSLTTVAIGAMEIATGMADIVIAGGV  122 (394)
T ss_pred             HCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCEEEEECE
T ss_conf             96979996475556566748899999769998887488-85541689999999999997399999999474


No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=46.84  E-value=22  Score=16.11  Aligned_cols=39  Identities=3%  Similarity=0.092  Sum_probs=17.9

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999998618998799997588888889999999999984
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV   93 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~   93 (293)
                      .+.-.+....+|.+  ++|+=-+-|-++....++.+.|+++
T Consensus       105 rv~iA~aL~~~P~i--lilDEPts~LD~~~~~~i~~~i~~l  143 (180)
T cd03214         105 RVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLRRL  143 (180)
T ss_pred             HHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999868964--7885875447999999999999999


No 243
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=46.47  E-value=22  Score=16.07  Aligned_cols=72  Identities=15%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC-------CCCCC
Q ss_conf             78679960332332232100011100013013534555653021024567774204225531552112-------34666
Q gi|254780747|r   96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-------PSPFS  168 (293)
Q Consensus        96 ~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~-------~~p~~  168 (293)
                      ..|+++.+-|+-|+|=.+||-.                       +...|..+|++..+|..|+|.-.       .+-|.
T Consensus        11 ~~klvIvmVGLPARGKS~ia~k-----------------------l~RYL~W~g~~~kvFn~G~yRR~~~~~~~~~~ffd   67 (223)
T pfam01591        11 NSKTMIVMVGLPARGKTYISKK-----------------------LTRYLNWLGVPTKVFNVGEYRRSAVKAYSNYEFFR   67 (223)
T ss_pred             CCCEEEEEECCCCCCHHHHHHH-----------------------HHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCC
T ss_conf             8988999989999988999999-----------------------99998656998058426378876318999941138


Q ss_pred             CCCHHHHHHHHHH----HHHHHHHHH
Q ss_conf             7899998877777----666667789
Q gi|254780747|r  169 EVNPKAVQMMQDV----VDSSYHWFV  190 (293)
Q Consensus       169 ~~s~e~~~~~~~~----l~~~~~~f~  190 (293)
                      |-+++..+..+.+    ++++.++|.
T Consensus        68 p~n~~~~~~R~~~a~~~l~dl~~~l~   93 (223)
T pfam01591        68 PDNTEAMKIREQCALAALKDVLAYLN   93 (223)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989999999999999999999998


No 244
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=46.42  E-value=22  Score=16.07  Aligned_cols=14  Identities=21%  Similarity=0.200  Sum_probs=5.4

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             46667899998877
Q gi|254780747|r  165 SPFSEVNPKAVQMM  178 (293)
Q Consensus       165 ~p~~~~s~e~~~~~  178 (293)
                      ||+..+.+..++.+
T Consensus       130 EPT~gLD~~~~~~i  143 (182)
T cd03215         130 EPTRGVDVGAKAEI  143 (182)
T ss_pred             CCCCCCCHHHHHHH
T ss_conf             87545899999999


No 245
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=46.37  E-value=22  Score=16.06  Aligned_cols=59  Identities=17%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             CEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHC
Q ss_conf             728999976662386--999999999861899879999758888-88899999999999841
Q gi|254780747|r   36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        36 ~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k   94 (293)
                      +.++++.+-|.+.+.  +++.+.+-......+++.+++++.+.. -+...++.+.+..+-+|
T Consensus         9 ~~vlvlPliG~ld~~r~~~l~e~ll~~i~~~~~~~viiDlsGv~~iD~~~~~~L~~l~~~~~   70 (109)
T cd07041           9 DGVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALR   70 (109)
T ss_pred             CCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             98899986898859999999999999999729889999745886377899999999999999


No 246
>PRK10403 transcriptional regulator NarP; Provisional
Probab=45.88  E-value=22  Score=16.02  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             EEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf             7666238699999999986189987999975888888899999999999841478679960332332-232100011100
Q gi|254780747|r   43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASNII  121 (293)
Q Consensus        43 i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad~I  121 (293)
                      +-|.-.+.++.++.+++    ....-++++++-||++.   -++...|++....-|++++....... ..-.+...|+-.
T Consensus        34 vv~~a~~~~~~~~~~~~----~~pDlvllD~~lp~~~G---~~~~~~l~~~~p~~~iivlt~~~~~~~~~~al~~Ga~gy  106 (215)
T PRK10403         34 VVAEAGDGASAIDLANR----LDIDVILLDLNMKGMSG---LDTLNALRRDGVTAQIIILTVSDASSDIFALIDAGADGY  106 (215)
T ss_pred             EEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCC---CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             99998999999999864----49989998089989987---412335654188773688632432367899874687668


Q ss_pred             CCCH---HHHHHHHHHHH-CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0130---13534555653-0210245677742042255315521123466678999988777776666677899998514
Q gi|254780747|r  122 VAAE---TSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR  197 (293)
Q Consensus       122 ~a~p---~s~vGsiGv~~-~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R  197 (293)
                      +.-+   ..++-.+--+. ...++..-..+.-.     .........+|+..+|+.+++.++-+.++.-   ...||+..
T Consensus       107 l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~l~-----~~~~~~~~~~~~~~LT~RE~eVL~lla~G~s---nkeIA~~L  178 (215)
T PRK10403        107 LLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLR-----EREMFGAEEDPFSVLTERELDVLHELAQGLS---NKQIASVL  178 (215)
T ss_pred             EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHHH
T ss_conf             848999999999999998499847989999998-----7421246677445689999999999986999---99999997


Q ss_pred             CCCHHHHHHH
Q ss_conf             9998899887
Q gi|254780747|r  198 NIPYDKTLVL  207 (293)
Q Consensus       198 ~~~~~~~~~~  207 (293)
                      +++...++..
T Consensus       179 ~iS~~TV~~h  188 (215)
T PRK10403        179 NISEQTVKVH  188 (215)
T ss_pred             CCCHHHHHHH
T ss_conf             9829999999


No 247
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.86  E-value=22  Score=16.01  Aligned_cols=22  Identities=14%  Similarity=0.062  Sum_probs=10.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             3466678999988777776666
Q gi|254780747|r  164 PSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       164 ~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      -||+..+.+..+..+..++..+
T Consensus       164 DEPTs~LD~~~~~~v~~li~~L  185 (255)
T cd03236         164 DEPSSYLDIKQRLNAARLIREL  185 (255)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHH
T ss_conf             7987658999999999999999


No 248
>pfam06263 consensus
Probab=45.84  E-value=22  Score=16.01  Aligned_cols=50  Identities=16%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999999998618998799997588888889999999999984147867996033
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE  105 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~  105 (293)
                      ..+..|+...+|+..+-|+|- .-|-. ..-.+.+.+.++.  .+|||++.+-+
T Consensus       237 sml~al~aL~~Dp~T~vIvlI-SKPPa-~eV~~kVl~~~~~--~~KPVV~~FLG  286 (514)
T pfam06263       237 MMLDALDALEQDEETKVIVLI-SKPPA-PEVAEKILELLKA--SGKPVVVLFLG  286 (514)
T ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCC-HHHHHHHHHHHHH--CCCCEEEEEEC
T ss_conf             899999998559983299996-58997-8999999999984--29988999847


No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.75  E-value=22  Score=16.00  Aligned_cols=20  Identities=15%  Similarity=0.247  Sum_probs=8.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q ss_conf             46667899998877777666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDS  184 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~  184 (293)
                      ||+..+.+..+..+.+++..
T Consensus       134 EPt~gLD~~~~~~i~~~l~~  153 (192)
T cd03232         134 EPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             CCCCCCCHHHHHHHHHHHHH
T ss_conf             88768898999999999999


No 250
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica).   O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , .   Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=45.28  E-value=23  Score=15.96  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHCCCC-----CCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             999999999861899-----879999758888--8889999999999984147867996033233223210001110
Q gi|254780747|r   51 QELIERIERISRDDS-----ATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI  120 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~-----ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~  120 (293)
                      +.+...|++|.++.+     |+.|-+ -..||  |+....-.+++.|. +.=+||++- ++..  -|.-|+..-.+.
T Consensus        55 ~~~~~L~~~Al~~~~~~~~~I~~IA~-t~~PGL~g~L~vGat~Ar~La-~~l~kPlig-v~H~--~GH~~~~~l~~~  126 (337)
T TIGR00329        55 ENIPPLLERALKESNVDISEIDLIAV-TSGPGLGGALIVGATFARSLA-LSLDKPLIG-VNHL--LGHIYAPLLDTN  126 (337)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHH-HHHCCCCCC-HHHH--HHHHHHHHHCCC
T ss_conf             98899999999982887010257898-558798514689999999998-987289551-4578--999988741477


No 251
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=44.81  E-value=23  Score=15.91  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999998618998799997588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +...++++.-|++|..|++=-..+.+.  +...+.+... ++++    -|-++ ++..|+||---+..+++.|-+....+
T Consensus        29 i~~~l~r~~i~~~id~vi~G~~~~~~~--~g~n~aR~aa-l~aGlp~~vp~~T-Vnr~C~SGl~Ai~~aa~~I~~G~~dv  104 (384)
T PRK07661         29 VKETLKRANYEGPIDDLIIGCAMPEAE--QGLNMARNIG-ALAGLPYTVPAIT-INRYCSSGLQSIAYGAERIMLGHSEA  104 (384)
T ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCCC--CCCCHHHHHH-HHCCCCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             999998609896359699994766465--5666999999-9769998877267-73502168999999999997699767


Q ss_pred             HHHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             3455565--30210245677742042255315521123466678999988777776666677899998514999889988
Q gi|254780747|r  129 VGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV  206 (293)
Q Consensus       129 vGsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~  206 (293)
                      +=.-|+-  ...|....          ..+.+      ..+.+..++   ....+     ..-.+.+++..++++++.++
T Consensus       105 viAGGvEsMS~~P~~~~----------~~~~~------~~~~~~~p~---~~~~M-----g~tAE~~A~~~gIsRe~qD~  160 (384)
T PRK07661        105 VLAGGAESMSLVPMMGH----------VVRPN------SRLVEAAPE---YYMGM-----GHTAEQVAVKYGVSREDQDA  160 (384)
T ss_pred             EEECCEECCCCCCCCCC----------CCCCC------CHHHCCCCH---HHCCH-----HHHHHHHHHHHCCCHHHHHH
T ss_conf             87546212257866766----------56898------122125843---33158-----79999999985999999999


Q ss_pred             HHCCCCCCHHHHHHCCCCC
Q ss_conf             7349823788998779806
Q gi|254780747|r  207 LSDGRIWTGAEAKKVGLID  225 (293)
Q Consensus       207 ~~~g~~~~~~~A~~~GLvD  225 (293)
                      ++-...-.+.+|.+.|..+
T Consensus       161 ~A~~Sh~rA~~A~~~G~f~  179 (384)
T PRK07661        161 FAVRSHQRAAKALAEGKFA  179 (384)
T ss_pred             HHHHHHHHHHHHHHCCCCH
T ss_conf             9999999999999859962


No 252
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.79  E-value=23  Score=15.91  Aligned_cols=72  Identities=28%  Similarity=0.374  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             99999999986189987999975888888899-----9999999998414786799603323322321000111000130
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYA-----GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE  125 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~-----~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p  125 (293)
                      .+++++|+.+..++.+..|++-=  .|||..-     -+.++++|.  .++.||++-+++-...  ...=..||.-...|
T Consensus       179 ~~I~~ai~~~~~~~~~DvIIi~R--GGGS~eDL~~FNdE~varaI~--~s~iPVISaIGHE~D~--Ti~D~VAD~Ra~TP  252 (443)
T PRK00286        179 ASIVEAIERANARGEVDVLIVAR--GGGSLEDLWAFNDEAVARAIA--ASKIPVISAVGHETDF--TIADFVADLRAPTP  252 (443)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHCCCHHHHHHHH--HCCCCEEECCCCCCCC--CHHHHHHHCCCCCH
T ss_conf             99999999985224888899936--878888976518799999998--4899789514667775--58888654037996


Q ss_pred             HHH
Q ss_conf             135
Q gi|254780747|r  126 TSL  128 (293)
Q Consensus       126 ~s~  128 (293)
                      ++-
T Consensus       253 TaA  255 (443)
T PRK00286        253 TAA  255 (443)
T ss_pred             HHH
T ss_conf             999


No 253
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=44.64  E-value=23  Score=15.90  Aligned_cols=61  Identities=18%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCC----CEEEEECCCCCCCCCCC
Q ss_conf             869999999998618998799997588-8888899999999999841478----67996033233223210
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRK----PVITEVHEMAASAGYLI  114 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~k----pvva~~~~~~~S~~Y~i  114 (293)
                      +.+++++.+     |+|--||+--+.| .-|..-..+.|.++|.++++++    -+=+.++=-|||||+.+
T Consensus       191 ~Pe~~~~~v-----DENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi~  256 (493)
T TIGR01788       191 DPEEVVDLV-----DENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFIA  256 (493)
T ss_pred             CHHHHHHHH-----CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             889999860-----767524888747232587088899999999974278874778766477446788113


No 254
>PRK02991 D-serine dehydratase; Provisional
Probab=44.08  E-value=24  Score=15.84  Aligned_cols=47  Identities=15%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             EECCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHH
Q ss_conf             623869999999998618998799997588---88888999999999998
Q gi|254780747|r   46 QIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQK   92 (293)
Q Consensus        46 ~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~   92 (293)
                      ++.....+-+.|++-...+---.++|.-||   ..||+-+---|++-++.
T Consensus        79 pl~~i~~m~~~L~~~~~~~~~G~l~lK~Ds~LPIsGSIKARGGIyEVL~~  128 (443)
T PRK02991         79 PLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKH  128 (443)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             65543999999977527888872687326778767552035308999999


No 255
>PRK05967 cystathionine beta-lyase; Provisional
Probab=44.04  E-value=17  Score=16.83  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~  122 (293)
                      +.++++. +++.|.|++.. .+|...+.-...|.+.-++  .+  +.+.+++..++.-+.  +...||-++
T Consensus       140 ~~~~~~i-~~~Tklv~~Etp~NP~l~v~Di~~ia~~A~~--~g--~~~vVDNTfatP~~~~Pl~~GADiVv  205 (392)
T PRK05967        140 AGIEKLM-RPNTKVVFTESPGSNTFEIQDIPAIAEAAHR--HG--AIVMMDNTWATPLYFRPLDFGVDISI  205 (392)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEEECHHHHHHHHHH--CC--CEEEEECCCCCCCEECCCCCCCCEEE
T ss_conf             9999744-8786599985589986455354999999987--69--87996177545342145655686899


No 256
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=43.90  E-value=24  Score=15.82  Aligned_cols=63  Identities=22%  Similarity=0.479  Sum_probs=38.4

Q ss_pred             EEEEEEEEEEECCHHHHHHHHHHHHCC----------CCCCEEEEECCCCCCCHHHHHH------HHHHHHHH-CCCCCE
Q ss_conf             289999766623869999999998618----------9987999975888888899999------99999984-147867
Q gi|254780747|r   37 HVARIAIRGQIEDSQELIERIERISRD----------DSATALIVSLSSPGGSAYAGEA------IFRAIQKV-KNRKPV   99 (293)
Q Consensus        37 ~i~~i~i~G~I~~~~~l~~~l~~a~~d----------~~ik~ivL~i~SpGG~~~~~~~------i~~ai~~~-k~~kpv   99 (293)
                      +|.++++.|.+.   +..++|+++..+          .++.++||    |||...+...      +.++|+++ +++||+
T Consensus         3 ~IGvl~~qGn~r---s~~~aL~~lG~~~~~v~~~~di~~ad~lIL----PGG~s~am~~ll~~~gl~~~i~~~i~~gkP~   75 (191)
T PRK13525          3 KIGVLALQGAVR---EHIAALEALGAEAVEVRRPEDLDEIDGLIL----PGGESTTMGKLLRDFGLLEPLREFIASGLPV   75 (191)
T ss_pred             EEEEEECCCCHH---HHHHHHHHCCCCEEEECCHHHHHHCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             799996478899---999999987997899899999953998997----8976589999999868689999999849985


Q ss_pred             EEEECCC
Q ss_conf             9960332
Q gi|254780747|r  100 ITEVHEM  106 (293)
Q Consensus       100 va~~~~~  106 (293)
                      .--|-++
T Consensus        76 LGIClGm   82 (191)
T PRK13525         76 FGTCAGM   82 (191)
T ss_pred             EEECHHH
T ss_conf             7622212


No 257
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=43.74  E-value=14  Score=17.24  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV  122 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~  122 (293)
                      .+.++++- +++.+.|+++- .+|-..+.-.+.|.+.-+   + ..+...+++..++.-+.  +...+|-++
T Consensus       124 ~~~~~~~i-~~~Tklv~~EspsNP~l~v~Di~~ia~ia~---~-~gi~~vvDNT~atP~~~~Pl~~GaDiVi  190 (379)
T PRK06176        124 LSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAK---D-HGLLTIVDNTFATPYYQNPLLLGADIVV  190 (379)
T ss_pred             HHHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHH---H-CCCEEEEECCCCCCCCCCHHHHCCCEEE
T ss_conf             68899656-877459999779998760158589999999---7-6987997367215133262341898899


No 258
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=43.67  E-value=24  Score=15.80  Aligned_cols=72  Identities=18%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----------CC
Q ss_conf             386999999999861899879999-7588888889999999999984147867996033233223210----------00
Q gi|254780747|r   48 EDSQELIERIERISRDDSATALIV-SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI----------SC  116 (293)
Q Consensus        48 ~~~~~l~~~l~~a~~d~~ik~ivL-~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i----------As  116 (293)
                      .+.+++.+.|+   ++++++.|.+ +-+|+.|-....++|.++++++  +  ....++..++=||..+          .+
T Consensus       117 v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~--g--~l~iVDaVsS~Gg~~~~vd~wgiDv~it  189 (383)
T COG0075         117 VDPEEVEEALD---KDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH--G--ALLIVDAVSSLGGEPLKVDEWGIDVAIT  189 (383)
T ss_pred             CCHHHHHHHHH---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHC--C--CEEEEEECCCCCCCCCCHHHCCCCEEEE
T ss_conf             99999999985---289950899981157520137699999999972--9--8899982345788125444428458997


Q ss_pred             CCCCCCCCHH
Q ss_conf             1110001301
Q gi|254780747|r  117 ASNIIVAAET  126 (293)
Q Consensus       117 ~ad~I~a~p~  126 (293)
                      ++.|-++.|-
T Consensus       190 gSQK~l~~PP  199 (383)
T COG0075         190 GSQKALGAPP  199 (383)
T ss_pred             CCCHHCCCCC
T ss_conf             6720115898


No 259
>PRK05968 hypothetical protein; Provisional
Probab=43.19  E-value=18  Score=16.61  Aligned_cols=42  Identities=19%  Similarity=0.022  Sum_probs=15.1

Q ss_pred             CCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             987999975-8888888999999999998414786799603323322
Q gi|254780747|r   65 SATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        65 ~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +.|.|++.- .+|...+.-.+.|.+.-++    ..+...+++..++.
T Consensus       147 ~Tklv~~EtpsNP~l~v~DI~~ia~iA~~----~g~~~vVDNTfatP  189 (389)
T PRK05968        147 GAKLLYLESPTSWVFELQDIAALAALAKR----HGVVTVIDNSWASP  189 (389)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHH----CCCEEEEECCCCHH
T ss_conf             87289997899988727389999999998----39959997786116


No 260
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=42.86  E-value=25  Score=15.72  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999861899879999758888888-------9999999999984147867996033233223210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a  123 (293)
                      +.+++..+.|.++ +.- ++.-.||.|+..       .+.-+|...-.++..-.|.++.+.+.|+-||-|+-..||.++|
T Consensus       113 ~Ki~r~~~~A~~~-g~P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D~~im  190 (526)
T COG4799         113 KKILRAQELAIEN-GLP-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDFVIM  190 (526)
T ss_pred             HHHHHHHHHHHHC-CCC-EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             0689999999980-997-79997154666355753323310898877876367877899984476663412354636999


Q ss_pred             CHH
Q ss_conf             301
Q gi|254780747|r  124 AET  126 (293)
Q Consensus       124 ~p~  126 (293)
                      .+.
T Consensus       191 v~~  193 (526)
T COG4799         191 VRD  193 (526)
T ss_pred             ECC
T ss_conf             848


No 261
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=42.77  E-value=25  Score=15.72  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=23.2

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99999986189987999975888888899999999999841478679960
Q gi|254780747|r   54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      +.-.+....+|++  ++|+=-+-|-++...+.+.+.|+++++.+..+..+
T Consensus       113 v~iaral~~~P~l--llLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiii  160 (200)
T cd03217         113 NEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEVINKLREEGKSVLII  160 (200)
T ss_pred             HHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999999609999--99969622699999999999999998579999999


No 262
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264   Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=42.77  E-value=25  Score=15.72  Aligned_cols=56  Identities=27%  Similarity=0.444  Sum_probs=40.1

Q ss_pred             EEEEEEECCH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCEEEE
Q ss_conf             9976662386---9999999998618998799997588888889999999999984--147867996
Q gi|254780747|r   41 IAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITE  102 (293)
Q Consensus        41 i~i~G~I~~~---~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~--k~~kpvva~  102 (293)
                      =.+.|.|+.+   +.+++.|++.+.. +|..++ .    |=|-++=|-++++|.++  |+.||.|+-
T Consensus       139 t~~~Gli~~~~~m~kic~tIekvA~s-d~Tvll-L----GESGTGKEV~ArA~H~~S~R~~~~FVAI  199 (451)
T TIGR02915       139 TALEGLITSSPGMQKICRTIEKVAPS-DITVLL-L----GESGTGKEVLARALHELSDRKDKRFVAI  199 (451)
T ss_pred             CCCCCEEECCCCHHHHHHHHHHHCCC-CCEEEE-E----CCCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             10365220685067898886521200-001301-0----4667117899989842057897773444


No 263
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=42.60  E-value=25  Score=15.70  Aligned_cols=12  Identities=17%  Similarity=0.014  Sum_probs=4.9

Q ss_pred             CCCCCCHHHHHH
Q ss_conf             062389899999
Q gi|254780747|r  224 IDVVGGQEEVWQ  235 (293)
Q Consensus       224 vD~ig~~~~a~~  235 (293)
                      ||+=-.+|-|+.
T Consensus       232 vdGelq~D~Al~  243 (324)
T PRK09653        232 IDGELQFDAAFV  243 (324)
T ss_pred             ECCCCHHHHHCC
T ss_conf             247410666539


No 264
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=42.57  E-value=8.7  Score=18.61  Aligned_cols=110  Identities=23%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCC---CCCCCCCCC--CCCC
Q ss_conf             69999999998618998799997588-8888899999999999841478679960-332332---232100011--1000
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAAS---AGYLISCAS--NIIV  122 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvva~~-~~~~~S---~~Y~iAs~a--d~I~  122 (293)
                      .+.|.++|+++.+--+-.+|+++=-. ||---.-.+.+-++-.+ |-+.||+-.- .++..|   -||=+|+-|  ++|.
T Consensus       111 EKKL~~aI~e~v~~Y~P~AvFVYsTCv~alIGDD~~AVCk~A~~-k~G~~ViPV~s~GF~G~NK~lGnk~AcdALl~~vi  189 (470)
T TIGR01283       111 EKKLFHAIREIVERYHPAAVFVYSTCVVALIGDDLEAVCKAAAE-KYGIPVIPVDSEGFYGSNKNLGNKLACDALLKHVI  189 (470)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCEECCEECCCHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             47899999999863299748994571310244888999999972-35860675157887777755002789999998638


Q ss_pred             C------------------CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf             1------------------3013534555653021024567774204225531552
Q gi|254780747|r  123 A------------------AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM  160 (293)
Q Consensus       123 a------------------~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~  160 (293)
                      -                  +.=.++|-.-+.++.+-.+.||||+||++..-=+|+-
T Consensus       190 g~~ep~~~~~~~~~~~~~~~diNliGEFN~AGE~W~v~pLleklGi~V~~~~tGD~  245 (470)
T TIGR01283       190 GTREPEPIPKSARRAGTTVHDINLIGEFNVAGEFWLVKPLLEKLGIRVLATITGDS  245 (470)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECHHCCCCCCCCCCHHHHCCCEEEEECCCCC
T ss_conf             98886657654456766567411152300001111001014338917999737888


No 265
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=42.49  E-value=25  Score=15.69  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             88888899999999999841478679960332332232100011100013013534--5556530210245677742042
Q gi|254780747|r   75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSI  152 (293)
Q Consensus        75 SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~  152 (293)
                      ++-|+  +-+.+.++|+.+|+++||+++=++---.-|.++ .+|+.+-...-..+-  .-|.+... --....+++|+.+
T Consensus         7 ~~~~~--~~~~V~~Ai~alr~G~~Viv~Dd~dREnEgDlv-~aAe~~T~e~i~fm~~~~~GliCva-~~~~~~~~L~Lp~   82 (214)
T PRK01792          7 SPFGT--SEERVINAINAFKQGNGVLVLDDEDRENEGDLI-FPAETITPEQMAKLIRYGSGIVCLC-ITDELCQQLDLPP   82 (214)
T ss_pred             HHCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCCEEEE-CCHHHHHHCCCCC
T ss_conf             57289--788999999999879969998289987640679-6855499999999999589778973-6999997779902


Q ss_pred             EEEEECC-----CCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCC
Q ss_conf             2553155-----211234----6667899998877777666667789999851499988998873-49823788998779
Q gi|254780747|r  153 KSVKSSP-----MKAEPS----PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVG  222 (293)
Q Consensus       153 ~~~~~g~-----~K~~~~----p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~G  222 (293)
                      -+-...+     |.-..+    .++..|..+|...-..          .+  ..+-.+++   +. -|.+| .-.|.+-|
T Consensus        83 mv~~n~~~~~taFtvsvd~~~g~~TGISa~DRa~TIr~----------l~--~~~~~~~d---f~~PGHVf-PL~a~~gG  146 (214)
T PRK01792         83 MVQHNTSVNKTAFTVTIEAAKGVSTGVSAADRVTTIQA----------AI--ADNAKPTD---LHRPGHVF-PLRAANGG  146 (214)
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH----------HH--CCCCCHHH---CCCCCCCC-EEEECCCC
T ss_conf             14667788888779999657897688698999999999----------85--79999788---49999768-24445698


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf             8062389899999999741877653012014
Q gi|254780747|r  223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWN  253 (293)
Q Consensus       223 LvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~  253 (293)
                      +.-+-|. -|+--.|..+++....-.+-...
T Consensus       147 vl~R~GH-TEaavdL~~lAGl~P~avicEil  176 (214)
T PRK01792        147 VLTRRGH-TEAAVDLARLAGYKEAGVICEIT  176 (214)
T ss_pred             CCCCCCH-HHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             8646974-88999999982999719999984


No 266
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719   DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks.   AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , .  Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2.     Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=42.45  E-value=25  Score=15.68  Aligned_cols=68  Identities=21%  Similarity=0.355  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHCCCCC-CEEEEECCCC-C-CCHHH--HHHHHHHHHHHCCCCCEEEEECCCCC--CCCCCCCCCCC
Q ss_conf             9999999998618998-7999975888-8-88899--99999999984147867996033233--22321000111
Q gi|254780747|r   51 QELIERIERISRDDSA-TALIVSLSSP-G-GSAYA--GEAIFRAIQKVKNRKPVITEVHEMAA--SAGYLISCASN  119 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~i-k~ivL~i~Sp-G-G~~~~--~~~i~~ai~~~k~~kpvva~~~~~~~--S~~Y~iAs~ad  119 (293)
                      +.+++.|+++.+.-.- +-|++-+.+. | |+--+  -+++...|..++.+-++=+ +-|.|.  .+||=|.+..+
T Consensus       151 ~~~i~~ln~v~~~t~~n~~v~i~LEtmAG~Gn~~G~~f~eLk~iI~~i~~~~r~GV-ClDTCH~FAaGYDI~T~~~  225 (318)
T TIGR00587       151 DNLIESLNEVIEETKNNKFVIIVLETMAGQGNEIGRSFEELKYIIDGIKDKSRIGV-CLDTCHTFAAGYDIRTVED  225 (318)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHEECCCEEE-ECCHHHHHHCCCCCCCHHH
T ss_conf             99999999986531699828999706687566778888999999853200473045-2222204121467777777


No 267
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=42.00  E-value=26  Score=15.64  Aligned_cols=39  Identities=13%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |++..+....+.++.+..++|+.-.|-+.
T Consensus        43 ~p~~ivL---SpGPG~P~~~~~~~~~i~~~~~~iPILGIClG~   82 (191)
T PRK06774         43 APSHVVI---SPGPCTPNEAGISLAVIRHFADKLPILGVCLGH   82 (191)
T ss_pred             CCCEEEE---CCCCCCHHHHCCHHHHHHHHCCCCCEEEEHHHH
T ss_conf             9996999---999989679073068999744699788616879


No 268
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=41.98  E-value=26  Score=15.64  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             HHHHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             999999986189-98799997-5888888899999999999---841478679960332332232100011100013013
Q gi|254780747|r   53 LIERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS  127 (293)
Q Consensus        53 l~~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s  127 (293)
                      +...|+++.-|+ .|..+++= ++..|+..   ..+++...   .+..+.|.++ ++..|+||.--+..+++.|-.-...
T Consensus        34 i~~~l~r~~i~p~~Id~vi~G~v~~~g~~~---~n~aR~~~L~aGlp~~vpa~t-Vn~~CaSGl~Av~~A~~~I~~G~~d  109 (382)
T PRK07801         34 LRGLVDRNDIDPAAVDDVIFGCVDAIGPQA---GNIARTSWLAAGYPEEVPGVT-VDRQCGSSQQAIHFAAQAIMSGTAD  109 (382)
T ss_pred             HHHHHHHHCCCHHHCCEEEEECCCCCCCCC---CCHHHHHHHHCCCCCCCCEEE-ECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             999999809798998989997166656655---679999999769998886488-8412158999999999886289967


Q ss_pred             HHHHHHHH--HCCCHHHHH--HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCH
Q ss_conf             53455565--302102456--77742042255315521123466678999988777776666677--8999985149998
Q gi|254780747|r  128 LVGSIGVL--FQYPYVKPF--LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPY  201 (293)
Q Consensus       128 ~vGsiGv~--~~~~~~~~l--l~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~--f~~~Va~~R~~~~  201 (293)
                      ++=..|+-  ...|.....  -.++|..             .|+..    .......+-+.-...  -.+.+++.-++++
T Consensus       110 v~lagGvEsMS~~P~~~~~~~~~~~g~~-------------~~~~~----~~~~~~~~~d~~~~~~~~ae~~a~~~~isR  172 (382)
T PRK07801        110 VIVAGGVQNMSQIPISSAMLVGEQLGFT-------------SPTNE----SKGWLHRYGDQEISQFRGAELIAEKWNLSR  172 (382)
T ss_pred             EEEECCEEECCCCCCCCCCCCCCCCCCC-------------CCCCC----CCCHHHHCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf             4665154322557653112334202566-------------75554----311566547865517679999999969899


Q ss_pred             HHHHHHHCCCCCCHHHHHHCCCCC
Q ss_conf             899887349823788998779806
Q gi|254780747|r  202 DKTLVLSDGRIWTGAEAKKVGLID  225 (293)
Q Consensus       202 ~~~~~~~~g~~~~~~~A~~~GLvD  225 (293)
                      +..++++-...-.+.+|.+.|.-+
T Consensus       173 e~~D~~A~~Sh~~A~~A~~~g~f~  196 (382)
T PRK07801        173 EEMERYALTSHERAFAAIRAGHFD  196 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             999999999999999999828623


No 269
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE.  NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.96  E-value=26  Score=15.64  Aligned_cols=105  Identities=14%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-----CCEEE-EECCCC--CCCCCCCCCCC--
Q ss_conf             869999999998618998799997588888889999999999984147-----86799-603323--32232100011--
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-----KPVIT-EVHEMA--ASAGYLISCAS--  118 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~-----kpvva-~~~~~~--~S~~Y~iAs~a--  118 (293)
                      +.+.+.+.|+.+.+--+-+.|.+.-  ..-+-.-.+.|...+++++.+     .||+. ...++.  .+.||.+|..+  
T Consensus        68 Ge~kL~~aI~~~~~~~~P~~i~V~s--TC~~e~IGDDi~~v~k~~~~~~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali  145 (429)
T cd03466          68 GEKNLKKGLKNVIEQYNPEVIGIAT--TCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIV  145 (429)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEC--CCHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             5999999999999841998899965--74386523639999999987347888837986389876867899999999999


Q ss_pred             CCCCCCHHH--HHHHHH---HHHCCCHHHHHHHHHHHCCEEE
Q ss_conf             100013013--534555---6530210245677742042255
Q gi|254780747|r  119 NIIVAAETS--LVGSIG---VLFQYPYVKPFLDKLGVSIKSV  155 (293)
Q Consensus       119 d~I~a~p~s--~vGsiG---v~~~~~~~~~ll~k~gi~~~~~  155 (293)
                      +++...+..  .+-.+|   ......-++++++.+|+++.++
T Consensus       146 ~~~~~~~~~~~~vNli~~~~~~gD~~eik~ll~~~Gl~~~vl  187 (429)
T cd03466         146 KNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILL  187 (429)
T ss_pred             HHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             984779887885678179897666999999999829957971


No 270
>KOG1683 consensus
Probab=41.90  E-value=26  Score=15.63  Aligned_cols=46  Identities=28%  Similarity=0.328  Sum_probs=31.5

Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHH
Q ss_conf             89999851499988998873498237889987798062389--899999
Q gi|254780747|r  189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQ  235 (293)
Q Consensus       189 f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~  235 (293)
                      .++.+.+.=|.... -..+.|+..|.-.+|++.||+|+++.  .+++++
T Consensus       200 ~iD~~~t~fGf~~g-~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~  247 (380)
T KOG1683         200 LIDSLITKFGFRVG-ERALADGVGFDVAEALAVGLGDEIGPRIEEELLE  247 (380)
T ss_pred             HHHHHHHHCCCCCC-HHHHHHCCCCCHHHHHHHCCCHHCCCHHHHHHHH
T ss_conf             99889986186140-7787541386589987211121103035999999


No 271
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=41.84  E-value=26  Score=15.63  Aligned_cols=10  Identities=20%  Similarity=0.365  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999984
Q gi|254780747|r   84 EAIFRAIQKV   93 (293)
Q Consensus        84 ~~i~~ai~~~   93 (293)
                      +-||.+|+=+
T Consensus       117 ~tlRpaLqiI  126 (322)
T TIGR00651       117 DTLRPALQII  126 (322)
T ss_pred             HHCCHHHHHH
T ss_conf             5404256652


No 272
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine  to pyruvate and ammonia.  D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A.  D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=41.57  E-value=26  Score=15.60  Aligned_cols=49  Identities=14%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             EEEECCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHH
Q ss_conf             66623869999999998618998799997588---88888999999999998
Q gi|254780747|r   44 RGQIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQK   92 (293)
Q Consensus        44 ~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~   92 (293)
                      +-++.....+.+.|++-...+---.++|.-||   ..||+-+---|++-++.
T Consensus        52 ESpl~~i~~m~~~L~~~~~~~i~G~l~lK~Ds~LPIsGSIKARGGIyEVL~~  103 (404)
T cd06447          52 ESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKH  103 (404)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEECCCHHHHHHHH
T ss_conf             4675342889999988637998873687326778767663035408999999


No 273
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=41.52  E-value=22  Score=16.05  Aligned_cols=50  Identities=8%  Similarity=0.016  Sum_probs=20.2

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             9999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S  109 (293)
                      +.++++- +++.+.|++.- .+|-..+.-.+.|.+.-+    .+-+.+.+++..++
T Consensus       137 ~~~~~ai-~~~T~lv~~EtpsNP~l~v~Di~~i~~iA~----~~g~~~vVDNT~at  187 (391)
T PRK08133        137 DAWRAAV-RPNTKLFFLETPSNPLTELADIAALAEIAH----AAGALLVVDNCFCT  187 (391)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHH----HCCCEEEEECCCCC
T ss_conf             9999745-878459999789999866555399999987----55875998789765


No 274
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.22  E-value=26  Score=15.57  Aligned_cols=35  Identities=9%  Similarity=0.154  Sum_probs=24.3

Q ss_pred             HHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCC
Q ss_conf             98514999889988734982378899877980623
Q gi|254780747|r  193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV  227 (293)
Q Consensus       193 Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~i  227 (293)
                      ..+++|++.+..+++.....|.|.-.++.|.+|++
T Consensus       462 lr~~kG~t~~~A~~~~~~~~~fg~mmv~~g~aDg~  496 (702)
T PRK05632        462 LRKHKGLTEEVAREQLEDNVVLGTMMLALGEVDGL  496 (702)
T ss_pred             HHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEE
T ss_conf             97308989999999860740389999864898879


No 275
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported.  It is suggested that M
Probab=40.91  E-value=27  Score=15.54  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH--HHC-CCCCEEEEECCCCC
Q ss_conf             699999999986189987999975888888899999999999--841-47867996033233
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVK-NRKPVITEVHEMAA  108 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~--~~k-~~kpvva~~~~~~~  108 (293)
                      .++-.+.|.+|..|++|++|+.-.   ||.-  +.+|-..|.  .++ ..|+++-|-+-.+.
T Consensus        51 ~~~Ra~dL~~a~~Dp~i~aI~~~r---GGyg--a~rlL~~LD~~~i~~~PK~~iGySDiTaL  107 (308)
T cd07062          51 PEERAEELMAAFADPSIKAIIPTI---GGDD--SNELLPYLDYELIKKNPKIFIGYSDITAL  107 (308)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECC---CCCC--HHHHHHHCCHHHHHHCCCEEEECCHHHHH
T ss_conf             899999999986299989999917---8777--88887646755686399489971464799


No 276
>TIGR01431 adm_rel adenosine deaminase-related growth factor; InterPro: IPR006331   Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, molluscs, and vertebrates ..
Probab=40.45  E-value=23  Score=15.95  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=8.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999887777766666778999
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      |+|+++...++....-|++|++.
T Consensus       462 L~~~eK~~a~~~w~~~Wd~Fi~~  484 (486)
T TIGR01431       462 LSEEEKKTAKAKWKKQWDKFIDE  484 (486)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88678999999875223468762


No 277
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity.  In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs.  Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.22  E-value=27  Score=15.47  Aligned_cols=11  Identities=27%  Similarity=0.114  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999986
Q gi|254780747|r   51 QELIERIERIS   61 (293)
Q Consensus        51 ~~l~~~l~~a~   61 (293)
                      .++++.|--..
T Consensus        40 TTll~~i~Gl~   50 (210)
T cd03269          40 TTTIRMILGII   50 (210)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999996002


No 278
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.10  E-value=23  Score=15.89  Aligned_cols=61  Identities=11%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321---00011100
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNII  121 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I  121 (293)
                      +.++++- +++.+.|+++- .+|-..+.-...|.+.-+   +. .+.+.+++..++. |+   +...||=+
T Consensus       140 ~~~~~~i-~~~Tklv~~EspsNP~l~v~Di~aia~iA~---~~-g~~~vVDNT~atP-~~~~Pl~~GaDiv  204 (433)
T PRK08134        140 DGWRAAI-RPNTRLLFGETLGNPGLEVLDIPTVAAIAH---EA-GVPLLVDSTFTTP-YLLRPFEHGADLV  204 (433)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH---HC-CCEEEEECCCCHH-HHCCHHHHCCCEE
T ss_conf             6788755-987528998538999750358999999997---56-7619971665115-3058055289889


No 279
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.97  E-value=28  Score=15.44  Aligned_cols=51  Identities=10%  Similarity=0.062  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             245677742042255315521123466---6789999-887777766666778999985
Q gi|254780747|r  141 VKPFLDKLGVSIKSVKSSPMKAEPSPF---SEVNPKA-VQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~---~~~s~e~-~~~~~~~l~~~~~~f~~~Va~  195 (293)
                      -.++++.+|.+.--+.-..    -.|+   .+.|.++ .+.+++.|.+.+.+|++.+..
T Consensus       344 ~~~~~~~~~~D~lRYyL~~----~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~  398 (558)
T COG0143         344 PDELLEQYGVDALRYYLAR----ELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLG  398 (558)
T ss_pred             HHHHHHHCCCHHHHHHHHH----HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7999987482385798887----377888888899999999989988788899999999


No 280
>PRK06434 cystathionine gamma-lyase; Validated
Probab=39.87  E-value=24  Score=15.88  Aligned_cols=15  Identities=20%  Similarity=0.518  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHCCEEE
Q ss_conf             245677742042255
Q gi|254780747|r  141 VKPFLDKLGVSIKSV  155 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~  155 (293)
                      ++..+.++||++..+
T Consensus       120 ~~~~l~~~Gi~v~~v  134 (384)
T PRK06434        120 FNKVLKTLGIHVDYI  134 (384)
T ss_pred             HHHHHHHCCCEEEEE
T ss_conf             998887569727995


No 281
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=39.58  E-value=28  Score=15.41  Aligned_cols=39  Identities=15%  Similarity=0.317  Sum_probs=27.8

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |.+.....+.+.++++..++|+.-.|-+.
T Consensus        44 ~~~~IIl---SpGPg~p~~~~~~~~~i~~~~~~~PILGIClG~   83 (191)
T PRK06895         44 NFSHILI---SPGPDVPRAYPQLFAMLERYYQQKSILGVCLGH   83 (191)
T ss_pred             CCCEEEE---ECCCCCCCCCCHHHHHHHHHCCCCCEEEECHHH
T ss_conf             5896999---089998010522499999860689878982999


No 282
>PRK05939 hypothetical protein; Provisional
Probab=39.09  E-value=20  Score=16.39  Aligned_cols=62  Identities=11%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321--00011100
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNII  121 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I  121 (293)
                      +.++++- +++.|.|++.- .+|...+.-...|.+.-++    ..+...+++..++.-++  +...||-+
T Consensus       121 ~~~~~ai-~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~----~g~~~vVDNT~atP~~~~Pl~~GaDiv  185 (396)
T PRK05939        121 QQVAAAI-RPNTRMVFVETIANPGTQVADLAGIGALCRE----RGLVYVVDNTMTSPWLFRPKSVGASLV  185 (396)
T ss_pred             HHHHHHH-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHH----CCCEEEEECCCCHHHHCCHHHHCCCEE
T ss_conf             9999861-8566189998089998707589999999998----399799977763042058556389889


No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=38.76  E-value=29  Score=15.33  Aligned_cols=23  Identities=9%  Similarity=0.128  Sum_probs=12.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23466678999988777776666
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      .-||+..+.+..++.+.+.+..+
T Consensus       135 lDEPTsgLD~~~~~~i~~~l~~l  157 (194)
T cd03213         135 LDEPTSGLDSSSALQVMSLLRRL  157 (194)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHH
T ss_conf             94898788989999999999999


No 284
>PRK08041 consensus
Probab=38.48  E-value=29  Score=15.30  Aligned_cols=152  Identities=14%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             HHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             9999986189-98799997-588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r   55 ERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        55 ~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +.|+++.-|+ .|..|++= +-+.|..    ..+.+.+. +..+    -|-++ ++..|+||..-+..++..|-+....+
T Consensus        36 ~~l~r~gi~~~~ID~vi~G~v~~~g~g----~n~aR~~a-l~aGlp~~vpa~t-Vnr~C~SGl~Ai~~Aa~~I~~G~~dv  109 (391)
T PRK08041         36 ALIERTGVPAYAVDEVILGQVLTAGAG----QNPARQSA-IKGGLPNSVSAIT-INDVCGSGLKALHLATQAIQCGEADI  109 (391)
T ss_pred             HHHHHCCCCHHHCCEEEEEECCCCCCC----CCHHHHHH-HHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             999981989899898999805765656----65999999-9769998887178-75165687899999999986799766


Q ss_pred             HHHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             3455565--30210245677742042255315521123466--6789999887777766666778999985149998899
Q gi|254780747|r  129 VGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT  204 (293)
Q Consensus       129 vGsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~  204 (293)
                      +=..|+-  .+.|++-.- .+.|.     ..|..... +.+  ..+.+..       -+....+--+.+++..++++++.
T Consensus       110 vlagGvEsmS~~P~~~~~-~~~g~-----~~g~~~~~-d~~~~dgl~d~~-------~~~~Mg~tAE~~A~~~gIsRe~q  175 (391)
T PRK08041        110 VIAGGQENMSRAPHVLTD-SRTGA-----QLGNSQLV-DSLVHDGLWDAF-------NDYHIGVTAENLAREYGISRELQ  175 (391)
T ss_pred             EEEEEEECCCCCCCCCCC-CCCCC-----CCCCCCCC-HHHCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHH
T ss_conf             777412214658411344-44466-----66754000-001134553545-------78737788999999859899999


Q ss_pred             HHHHCCCCCCHHHHHHCCCCCC
Q ss_conf             8873498237889987798062
Q gi|254780747|r  205 LVLSDGRIWTGAEAKKVGLIDV  226 (293)
Q Consensus       205 ~~~~~g~~~~~~~A~~~GLvD~  226 (293)
                      ++++-...-.+.+|.+.|.-++
T Consensus       176 D~~A~~Sh~rA~~A~~~G~f~~  197 (391)
T PRK08041        176 DAYALSSQQKARAAIDAGRFKD  197 (391)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHH
T ss_conf             9999999999999987599753


No 285
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=38.27  E-value=29  Score=15.28  Aligned_cols=180  Identities=12%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC-------CCC
Q ss_conf             99999999861899879999758888-888999999999998414786799603323322321---0001-------110
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA-------SNI  120 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~-------ad~  120 (293)
                      ..++.+...  +  -.+|||   ||| |.+..+-...+.+++++.++|+.-.|-+.-+=+.++   +..+       +..
T Consensus        39 ~~~e~~~~~--~--p~~IVl---SPGPG~P~dag~~~~ii~~~~~~iPILGICLGhQ~ia~~~Gg~v~~a~~~~HGk~s~  111 (531)
T PRK09522         39 TLIERLATM--S--NPVLML---SPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASS  111 (531)
T ss_pred             CCHHHHHHC--C--CCEEEE---CCCCCCCHHCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEE
T ss_conf             019999724--9--596998---999989023657399999865999989987877899997298896779843233656


Q ss_pred             CCCCHHHHHHHH----HHHHCC-CHHHHHHHHHHHCC------EEEEECCCCCCCCCCCC---CCHHHHHHHHHHHHHH-
Q ss_conf             001301353455----565302-10245677742042------25531552112346667---8999988777776666-
Q gi|254780747|r  121 IVAAETSLVGSI----GVLFQY-PYVKPFLDKLGVSI------KSVKSSPMKAEPSPFSE---VNPKAVQMMQDVVDSS-  185 (293)
Q Consensus       121 I~a~p~s~vGsi----Gv~~~~-~~~~~ll~k~gi~~------~~~~~g~~K~~~~p~~~---~s~e~~~~~~~~l~~~-  185 (293)
                      |.-+..+++-.+    -+.+.+ .....+.+.+-|..      -.++.-+++-.+=.|+|   +|+..++.++..|+-. 
T Consensus       112 i~~~~~~lF~glp~~~~v~rYHSl~~~~lP~~l~v~A~~~g~iMai~h~~~pi~GVQFHPESi~T~~G~~il~NFLn~~~  191 (531)
T PRK09522        112 IEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ  191 (531)
T ss_pred             EEECCCCCCCCCCCCCEEEEECEECCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             79898520289999977996443304479998799971699999999899986998208754688777999999856543


Q ss_pred             --------HHHHHHHHHHCCCCCHHHHHHH----HCCCCCCHHH-H----H--HCCCCCCCCCHHHHHHHHH
Q ss_conf             --------6778999985149998899887----3498237889-9----8--7798062389899999999
Q gi|254780747|r  186 --------YHWFVRLVSESRNIPYDKTLVL----SDGRIWTGAE-A----K--KVGLIDVVGGQEEVWQSLY  238 (293)
Q Consensus       186 --------~~~f~~~Va~~R~~~~~~~~~~----~~g~~~~~~~-A----~--~~GLvD~ig~~~~a~~~l~  238 (293)
                              ...++..+.+++.++.++....    .+|+.=-+|- |    +  +===+|+|...-.++.+..
T Consensus       192 ~~~~~~~~~k~~l~kl~~g~~Lt~~ea~~~m~~im~G~~t~~qi~a~L~~lr~kGEt~~Ei~g~a~amr~~a  263 (531)
T PRK09522        192 QKLEPTNTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENA  263 (531)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             435544408999999866999999999999999968999999999999999852898999999999999848


No 286
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=38.06  E-value=30  Score=15.26  Aligned_cols=63  Identities=21%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             EEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             289999766623--869999999998618998799997588-8888899999999999841478679
Q gi|254780747|r   37 HVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVI  100 (293)
Q Consensus        37 ~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvv  100 (293)
                      .+.+.+++|++.  +.+++.+.+....++ +.+.++++..+ +.-+.++.+.+.+.+++++++...+
T Consensus       444 ~~~v~ri~gplfF~~~~~~~~~i~~~~~~-~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~  509 (554)
T COG0659         444 GVLVYRLSGPLFFGNADRLERALLGLIEE-RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQL  509 (554)
T ss_pred             CEEEEEECCCEEEECHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf             77999926863672069999999977753-7877999856688578049999999999999779889


No 287
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=37.73  E-value=30  Score=15.22  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCC----CCCCCCCCCCCCCCCH
Q ss_conf             999999999861899879999758888888999999999998414786799603-32332----2321000111000130
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH-EMAAS----AGYLISCASNIIVAAE  125 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~-~~~~S----~~Y~iAs~ad~I~a~p  125 (293)
                      -++++.|.+|..+-  .+|++.   ||+-...+-.|++||+..  ..|++-.-- +..+-    -.-|+|-.|.-+++- 
T Consensus        54 g~Lid~Ihea~~~~--~~IvIN---pga~THTSvAlrDAi~av--~iP~vEVHlSNihaRE~FRhhS~~s~~a~GvI~G-  125 (146)
T COG0757          54 GELIDWIHEARGKA--GDIVIN---PGAYTHTSVALRDAIAAV--SIPVVEVHLSNIHAREEFRHHSYTSPVAKGVICG-  125 (146)
T ss_pred             HHHHHHHHHHHCCC--CEEEEC---CCCCHHHHHHHHHHHHHC--CCCEEEEEECCCHHCCCCCCCCCCCCHHCEEEEC-
T ss_conf             78999999852248--729984---763105689999999845--7987999824711045000133105024136843-


Q ss_pred             HHHHHHHHHHHCCCHHHHHH
Q ss_conf             13534555653021024567
Q gi|254780747|r  126 TSLVGSIGVLFQYPYVKPFL  145 (293)
Q Consensus       126 ~s~vGsiGv~~~~~~~~~ll  145 (293)
                         .|..|..+......+.+
T Consensus       126 ---lG~~GY~lAl~~l~~~~  142 (146)
T COG0757         126 ---LGAQGYLLALRALVNIL  142 (146)
T ss_pred             ---CCHHHHHHHHHHHHHHH
T ss_conf             ---76888999999999986


No 288
>PTZ00107 hexokinase; Provisional
Probab=37.69  E-value=30  Score=15.22  Aligned_cols=103  Identities=19%  Similarity=0.282  Sum_probs=45.1

Q ss_pred             CEEEEEC----CCC--------CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH-H
Q ss_conf             7999975----888--------88889999999999984147867996033233223210001110001301353455-5
Q gi|254780747|r   67 TALIVSL----SSP--------GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI-G  133 (293)
Q Consensus        67 k~ivL~i----~Sp--------GG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsi-G  133 (293)
                      +|++++.    +.+        |=++  .+.+.+++++-.-+-.|+|.++|..   |.++|++=..=-..|...+|.| |
T Consensus       193 ~G~Li~WTKGF~~~~a~~~gVeGkDV--v~lL~~Ai~r~~l~v~V~AlvNDTV---GTL~a~aY~~~~~~~~~~IG~I~G  267 (485)
T PTZ00107        193 NAILLDWTKGFETGRATNDQVEGRDV--GKLMNEAFKRNNINAEVSIVLNDTV---GTLMSCAYQKPKDYPPCRVGVILG  267 (485)
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHCCCCCEEEEEEECCH---HHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf             36986414750457666788776617--9999999983499814999995078---877665404788886616999983


Q ss_pred             HHHCCCHHHHHHHHHHHCCEEE--EECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6530210245677742042255--31552112346667899998877
Q gi|254780747|r  134 VLFQYPYVKPFLDKLGVSIKSV--KSSPMKAEPSPFSEVNPKAVQMM  178 (293)
Q Consensus       134 v~~~~~~~~~ll~k~gi~~~~~--~~g~~K~~~~p~~~~s~e~~~~~  178 (293)
                      .-...-+...-..+.+..-.++  -+|.|-+   . -|.++-+++.=
T Consensus       268 TGtNacY~E~~~~~~~~~g~iINtEWG~F~~---~-lp~T~~D~~lD  310 (485)
T PTZ00107        268 TGFNICYEEDEYKRYGYVGKVINIECGNFDK---E-LPLNPVDFEID  310 (485)
T ss_pred             CCCCCEEEEHHHHCCCCCCCEEEEEECCCCC---C-CCCCHHHHHHH
T ss_conf             5611156404333147778878852015899---8-88878889875


No 289
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=37.47  E-value=30  Score=15.20  Aligned_cols=55  Identities=13%  Similarity=0.303  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf             565556778728999976662386--9999999998618998799997588888889
Q gi|254780747|r   27 WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAY   81 (293)
Q Consensus        27 ~~~~~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~   81 (293)
                      .......+...-.|.|..|++...  ..+.+.+++.++.....-+|+-++|.+|...
T Consensus        23 ~a~~~~~p~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~I   79 (271)
T COG1512          23 FAEPIPAPTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETI   79 (271)
T ss_pred             HCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
T ss_conf             125567876653342053458755777899999999735586189999458999798


No 290
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=37.19  E-value=30  Score=15.17  Aligned_cols=138  Identities=12%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf             9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r   41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA  117 (293)
Q Consensus        41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~  117 (293)
                      +++-|...+.++.++.+..    ....-++++++-||.+..  +    .+++++...|++.+...  ....|.   +...
T Consensus        27 ~~vv~~~~~~~~~l~~~~~----~~~dvvllD~~mp~~~g~--~----~~~~l~~~~~vivls~~--~~~~~~~~a~~~G   94 (196)
T PRK10360         27 LQVVAEFGSGREALAGLPG----RGVQVCICDISMPDISGL--E----LLSQLPKGMATIMLSVH--DSPALVEQALNAG   94 (196)
T ss_pred             EEEEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCCH--H----HHHHHHCCCCEEEEEEC--CCHHHHHHHHHCC
T ss_conf             5999998999999998874----499999987887886207--7----99998438748999730--7599999999759


Q ss_pred             CCCCCC---CHHHHHHHHHHHH-CCCHHHH-HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110001---3013534555653-0210245-6777420422553155211234666789999887777766666778999
Q gi|254780747|r  118 SNIIVA---AETSLVGSIGVLF-QYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       118 ad~I~a---~p~s~vGsiGv~~-~~~~~~~-ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      ++-.+.   ++..++-.|-.+. ...++.. +..++              ...+-.++|+.+++.++-+.++..   ...
T Consensus        95 a~g~l~K~~~~~el~~aI~~v~~G~~~~~~~~~~~l--------------~~~~~~~LT~RE~eVL~lia~G~s---nke  157 (196)
T PRK10360         95 ARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKL--------------ASGRQDPLTKRERQVAEKLAQGMA---VKE  157 (196)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHH--------------HCCCCCCCCHHHHHHHHHHHCCCC---HHH
T ss_conf             988997789999999999999869956799999998--------------716768999799999999987999---999


Q ss_pred             HHHCCCCCHHHHHHH
Q ss_conf             985149998899887
Q gi|254780747|r  193 VSESRNIPYDKTLVL  207 (293)
Q Consensus       193 Va~~R~~~~~~~~~~  207 (293)
                      ||+..+++..+++..
T Consensus       158 IA~~L~IS~~TVk~h  172 (196)
T PRK10360        158 IAAELGLSPKTVHVH  172 (196)
T ss_pred             HHHHHCCCHHHHHHH
T ss_conf             999969999999999


No 291
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.12  E-value=29  Score=15.30  Aligned_cols=63  Identities=21%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322321---000111000
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNIIV  122 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I~  122 (293)
                      .+.++++ .+++.|.|++.- .+|-..+.-.+.|.+.-++  .+-|+  .+++..++. |+   +...||-++
T Consensus       137 ~~~~~~~-~~~~Tkli~~EtpsNP~l~v~Di~~ia~iA~~--~gi~~--vVDNTfatP-~~~rPl~~GaDiVv  203 (432)
T PRK06702        137 ADEIVAL-ANDKTKLVYAESLGNPAMNVLNFKEFSDAAKE--LEVPF--IVDNTLATP-YLCQAFEHGANIIV  203 (432)
T ss_pred             HHHHHHH-CCCCCEEEEEEECCCCCCEEECHHHHHHHHHH--CCCEE--EEECCCCCC-CCCCCHHCCCCEEE
T ss_conf             9999974-57875089997279997320279999999976--69818--963576430-10462012898999


No 292
>PRK10744 phosphate transporter subunit; Provisional
Probab=36.65  E-value=31  Score=15.12  Aligned_cols=10  Identities=10%  Similarity=0.474  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999998
Q gi|254780747|r   51 QELIERIERI   60 (293)
Q Consensus        51 ~~l~~~l~~a   60 (293)
                      ..+++.|...
T Consensus        50 STLlk~i~gl   59 (257)
T PRK10744         50 STLLRTFNKM   59 (257)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999876


No 293
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids.  The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis.  YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein.  Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli.  The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=36.59  E-value=31  Score=15.11  Aligned_cols=18  Identities=44%  Similarity=0.807  Sum_probs=7.4

Q ss_pred             CCCCCCCHHHHHHHHHHH
Q ss_conf             466678999988777776
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVV  182 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l  182 (293)
                      ||+..+.+..++.+.+++
T Consensus       159 EPt~GLDp~~~~~i~~~i  176 (232)
T cd03218         159 EPFAGVDPIAVQDIQKII  176 (232)
T ss_pred             CCCCCCCHHHHHHHHHHH
T ss_conf             985688999999999999


No 294
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843    This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=36.55  E-value=22  Score=16.02  Aligned_cols=53  Identities=11%  Similarity=0.264  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             86999999999861899879999758888888999999999998414786799603323322
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +.++..+.+++|++   .-.|-|++  -||.+.+-..|.+.++..+.    .-++.++.+||
T Consensus        38 ~T~~W~~Vl~qAa~---lGvlqlHf--SGGEP~aR~DL~eLv~~A~~----LGlYtNLITSG   90 (363)
T TIGR02109        38 TTEEWTDVLTQAAE---LGVLQLHF--SGGEPLARPDLVELVAHARR----LGLYTNLITSG   90 (363)
T ss_pred             CHHHHHHHHHHHHH---CCCEEEEC--CCCCCCCCCCHHHHHHHHHH----CCCCHHHHHHH
T ss_conf             88899999999985---39067513--07766633577999999977----58701467763


No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.13  E-value=32  Score=15.07  Aligned_cols=73  Identities=10%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf             69999999998618998799997588888889999999999984147867996033233223210001110001-3013
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETS  127 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s  127 (293)
                      +++-+.-.+....++.-.-++|+=-+.|-++...+++.+.|+++++.+..+.++.+.-    .. +..||+|+. .++.
T Consensus        92 qkQRvaiAraL~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~----~~-~~~aDrii~l~~G~  165 (176)
T cd03238          92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL----DV-LSSADWIIDFGPGS  165 (176)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HH-HHHCCEEEEECCCC
T ss_conf             9999999999986899868997177445898799999999999998799899994787----99-98399999945997


No 296
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=36.07  E-value=32  Score=15.06  Aligned_cols=62  Identities=15%  Similarity=0.349  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC
Q ss_conf             99999999986189987999975--8888888999999999998414-7867996033233223210
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI  114 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i  114 (293)
                      +.+-+.|+.- .-++|.-|++.+  ||.||.+...+.|++.=+-.++ +.|++-=..-.+ --+|+|
T Consensus       139 ~kLe~~i~~~-g~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~giplvlDaaRfa-ENAyFI  203 (431)
T cd00617         139 AKLEKLIDEV-GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFA-ENAYFI  203 (431)
T ss_pred             HHHHHHHHHH-CCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH-HHHHHH
T ss_conf             9999999873-8666108999986368788566789999999999980997998766788-768999


No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=36.02  E-value=32  Score=15.05  Aligned_cols=74  Identities=12%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf             6999999999861899879999758888888999999999998414786799603323322321000111000-130135
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV-AAETSL  128 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~-a~p~s~  128 (293)
                      +++.+.-....+.+|++  ++|+=-+-+-++...+++.+.|+++++.+..+.++.+..    .+++..||+|+ +..+.+
T Consensus       148 qkQrv~iA~aL~~~p~l--LilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~isH~l----~~v~~~aDrv~vl~~G~i  221 (513)
T PRK13549        148 QQQLVEIAKALNKQARL--LILDEPTASLTESETAILLDIIRDLKQHGIACIYISHKL----NEVKAISDTICVIRDGRH  221 (513)
T ss_pred             HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HHHHCCCCEEEECCCCCE
T ss_conf             99999998877529988--640667578885777999999999875596799994571----430300987404489858


Q ss_pred             H
Q ss_conf             3
Q gi|254780747|r  129 V  129 (293)
Q Consensus       129 v  129 (293)
                      +
T Consensus       222 v  222 (513)
T PRK13549        222 I  222 (513)
T ss_pred             E
T ss_conf             8


No 298
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=35.80  E-value=32  Score=15.03  Aligned_cols=78  Identities=23%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             HHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             999999986189-987999975888888899999999999---8414786799603323322321000111000130135
Q gi|254780747|r   53 LIERIERISRDD-SATALIVSLSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        53 l~~~l~~a~~d~-~ik~ivL~i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +...|+++.-|+ .|..|++=--.++|.   ...+.+.+.   .+..+.|.+. ++..|+||.--+..++..|-+-...+
T Consensus        30 i~~al~~agl~~~~Id~vi~G~~~~~g~---g~n~aR~~al~aGlp~~vp~~t-V~~aCaSG~~Ai~~A~~~I~sG~~dv  105 (386)
T cd00751          30 IKALLERAGLDPEEVDDVIMGNVLQAGE---GQNPARQAALLAGLPESVPATT-VNRVCGSGLQAVALAAQSIAAGEADV  105 (386)
T ss_pred             HHHHHHHCCCCHHHCCEEEEEECCCCCC---CCCHHHHHHHHCCCCCCCCEEE-EECHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             9999998498989999899995066665---6639999999769998886588-84221687999999974110799778


Q ss_pred             HHHHHH
Q ss_conf             345556
Q gi|254780747|r  129 VGSIGV  134 (293)
Q Consensus       129 vGsiGv  134 (293)
                      +=..|+
T Consensus       106 vla~Gv  111 (386)
T cd00751         106 VVAGGV  111 (386)
T ss_pred             EEEECC
T ss_conf             887244


No 299
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=35.76  E-value=28  Score=15.43  Aligned_cols=170  Identities=15%  Similarity=0.081  Sum_probs=75.5

Q ss_pred             HHHHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             999999986189-98799997-58888888999999999998---41478679960332332232100011100013013
Q gi|254780747|r   53 LIERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAAETS  127 (293)
Q Consensus        53 l~~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~~---~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s  127 (293)
                      +...++++.-|+ .|..|++= +. ++|.-   ..+.+.+.-   +..+-|.++ ++..|+||---+..+++.|-.....
T Consensus        35 i~~~l~r~~i~p~~Id~Vi~G~v~-~~~~~---~n~AR~aaL~aGlp~~vp~~T-Vnr~C~SGl~Ai~~Aa~~I~~G~~d  109 (426)
T PRK08170         35 GRALLNRQPFAPDDLDEVILGCAM-PSPDE---ANIGRVAALRLGCGEDVPGWT-VQRNCASGMQALDSAARNIALGRAD  109 (426)
T ss_pred             HHHHHHHCCCCHHHCCEEEEEECC-CCCCC---CCHHHHHHHHCCCCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999749998999989999336-25666---779999999769998887267-7661237999999999998559988


Q ss_pred             HHHHHHHH--HCCCHH-HHHHHHHHHCCEEEEE-CCCCCCCCCCCC--CCHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf             53455565--302102-4567774204225531-552112346667--89999887777766----66677899998514
Q gi|254780747|r  128 LVGSIGVL--FQYPYV-KPFLDKLGVSIKSVKS-SPMKAEPSPFSE--VNPKAVQMMQDVVD----SSYHWFVRLVSESR  197 (293)
Q Consensus       128 ~vGsiGv~--~~~~~~-~~ll~k~gi~~~~~~~-g~~K~~~~p~~~--~s~e~~~~~~~~l~----~~~~~f~~~Va~~R  197 (293)
                      ++=.-|+-  ...|+. .+-..+..-.+...+. ++.-.....|++  ..+.. .....+.|    .....-.+.+++.-
T Consensus       110 vviAGGvEsMS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~gl~dp~~~~~Mg~tAE~~A~~~  188 (426)
T PRK08170        110 LVLAGGTEALSRAPLLFSEKMVRWLAGWAAAKSAGAKLAALGKLRPSYLAPVI-GLLRGLTDPVVGLNMGQTAEVLAHRF  188 (426)
T ss_pred             EEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCH-HHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             89993722045675124531001102322234602334332135732235300-01025657556664899999999997


Q ss_pred             CCCHHHHHHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf             9998899887349823788998779806238
Q gi|254780747|r  198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG  228 (293)
Q Consensus       198 ~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig  228 (293)
                      ++++++.++++-...-.+.+|.+.|.-+++-
T Consensus       189 gisRe~qD~~A~~Sh~rA~~A~~~G~f~eiv  219 (426)
T PRK08170        189 GITREAMDAYAARSHQRLAAAQAEGRLKEVV  219 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9799999999997199999999809986687


No 300
>PRK06091 membrane protein FdrA; Validated
Probab=35.74  E-value=32  Score=15.03  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999999998618998799997588888889999999999984147867996033
Q gi|254780747|r   52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE  105 (293)
Q Consensus        52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~  105 (293)
                      ..+..|+...+|+..+-|+|- .-|-. ..-.+.+.+.++.  .+|||++.+-+
T Consensus       239 s~l~al~aL~~Dp~T~vIvlI-SKPPa-~eV~~kVl~~~~~--~~KPVV~~FLG  288 (555)
T PRK06091        239 SALTALEMLSADEKSEVLAFV-SKPPA-EAVRLKIINAMKA--TGKPVVALFLG  288 (555)
T ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCC-HHHHHHHHHHHHH--CCCCEEEEEEC
T ss_conf             899999998559983299996-58997-8999999999984--29988999727


No 301
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033    Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=35.71  E-value=32  Score=15.02  Aligned_cols=53  Identities=11%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             999861899879999758888888999999999998414786799603323322
Q gi|254780747|r   57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        57 l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +-++..|+..|||||+=-..|+.+.....+-+.|+++-. +=|++.+..+|.+|
T Consensus       235 i~~~~~~~~YkGiViegtG~G~~P~~~R~~l~~~~ea~d-~GvVVV~ttQCl~G  287 (347)
T TIGR00519       235 IIRAYLSKGYKGIVIEGTGLGHVPQELRDILSKLQEAID-SGVVVVMTTQCLNG  287 (347)
T ss_pred             HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEEEEEECCC
T ss_conf             999862699348998204678883568899998776322-87168875443158


No 302
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=35.69  E-value=32  Score=15.02  Aligned_cols=28  Identities=32%  Similarity=0.553  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             9999999998618998799997588888
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGG   78 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG   78 (293)
                      +++++.|+++.+|++|.||++..-=|.+
T Consensus        73 ~~l~~~I~~lN~D~~V~GIlvqlPLP~~  100 (117)
T pfam00763        73 EELLALIEKLNADPSVHGILVQLPLPKH  100 (117)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             9999999999678878879883889888


No 303
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=35.62  E-value=29  Score=15.31  Aligned_cols=56  Identities=21%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHH
Q ss_conf             0111000130135345556530210245677742042255315521123466---6789999887777
Q gi|254780747|r  116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF---SEVNPKAVQMMQD  180 (293)
Q Consensus       116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~---~~~s~e~~~~~~~  180 (293)
                      ..||-|+.-|++.+-||+-+...+.+++.+.+         +..-|-+.||+   +..+-..-..+++
T Consensus       185 ~~AD~IVigPsnp~tSI~PiL~VpgireAL~~---------s~a~vVaVSPiigg~avkGPa~k~m~~  243 (309)
T PRK13606        185 EDADVVVIGPSNPVTSIGPILAVPGIREALRE---------TGAPVVAVSPIIGGKPVSGPADKLMKA  243 (309)
T ss_pred             HHCCCEEECCCCCEEEEEHHHCCHHHHHHHHH---------CCCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             83992898689750353113157269999985---------799889989776898888707999998


No 304
>TIGR01383 not_thiJ DJ-1 family protein; InterPro: IPR006287    These sequences represent the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by IPR006286 from INTERPRO, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras . Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ (thiamine pyridinylase), a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of Escherichia coli. The ThiJ designation for this family may be spurious; the cited paper  refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.   This group of proteins are classified as either DJ-1 putative peptidases or non-peptidase homologs in MEROPS peptidase family C56 (clan PC(C)). .
Probab=35.35  E-value=33  Score=14.99  Aligned_cols=65  Identities=17%  Similarity=0.423  Sum_probs=40.9

Q ss_pred             EEEEEEEEE---ECCHHHH---HH-HHHHHHCCCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             899997666---2386999---99-9999861899879999758888888-----9999999999984147867996033
Q gi|254780747|r   38 VARIAIRGQ---IEDSQEL---IE-RIERISRDDSATALIVSLSSPGGSA-----YAGEAIFRAIQKVKNRKPVITEVHE  105 (293)
Q Consensus        38 i~~i~i~G~---I~~~~~l---~~-~l~~a~~d~~ik~ivL~i~SpGG~~-----~~~~~i~~ai~~~k~~kpvva~~~~  105 (293)
                      ++.+.++|.   +..++.+   .+ .|+. -+++.-..|+|    |||.+     ..|..+.+.|+++.++++++|.+  
T Consensus        33 ~~~v~~~~~~l~V~gs~gv~~~AD~~l~d-~~~~~fD~ivL----PGG~pGa~nL~~S~~l~~~lk~~~~~gkl~AAI--  105 (186)
T TIGR01383        33 VAIVGLNGSGLLVKGSRGVKILADASLED-VDDEEFDLIVL----PGGMPGAENLRDSKLLENLLKKQESKGKLVAAI--  105 (186)
T ss_pred             EEEEEECCCCCEEEEECCCEECCCCCHHH-CCCCCCCEEEE----CCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEE--
T ss_conf             99974258976046535627734871412-57777677893----698226664202578999999999749938842--


Q ss_pred             CCCCC
Q ss_conf             23322
Q gi|254780747|r  106 MAASA  110 (293)
Q Consensus       106 ~~~S~  110 (293)
                       ||+-
T Consensus       106 -CAaP  109 (186)
T TIGR01383       106 -CAAP  109 (186)
T ss_pred             -HHHH
T ss_conf             -0458


No 305
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=35.26  E-value=33  Score=14.98  Aligned_cols=17  Identities=29%  Similarity=0.639  Sum_probs=6.2

Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             46667899998877777
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDV  181 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~  181 (293)
                      ||+..+.+..+..+..+
T Consensus       163 EPt~gLD~~~~~~i~~~  179 (241)
T PRK10895        163 EPFAGVDPISVIDIKRI  179 (241)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             87547999999999999


No 306
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=35.25  E-value=33  Score=14.98  Aligned_cols=140  Identities=14%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             EEEEEEEECCHH----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC
Q ss_conf             999766623869----99999999861899879999758888888999999999998414-7867996033233223210
Q gi|254780747|r   40 RIAIRGQIEDSQ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI  114 (293)
Q Consensus        40 ~i~i~G~I~~~~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i  114 (293)
                      .+..+|+|..+-    -..-+++.-.++++   |.+-.=.- |+.. --..+++++-..- +-||+.++++.--.-+.-.
T Consensus       131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~---Va~~~~GD-Gat~-qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~  205 (358)
T COG1071         131 FLGGSGIVGTQIPLAAGAALALKYRGTKDG---VAVAFFGD-GATN-QGDFHEALNFAAVWKLPVVFVIENNQYAISVPR  205 (358)
T ss_pred             CCCCCCEECCCCCHHHHHHHHHHHHCCCCC---EEEEEECC-CCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCH
T ss_conf             578784046653479999999997489981---89999457-8655-333999989999856987999966871670456


Q ss_pred             C-CCCCCCCCCHHHHHHHHHHHHCCCHH-------HHHHHHH--H-----HCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0-01110001301353455565302102-------4567774--2-----042255315521123466678999988777
Q gi|254780747|r  115 S-CASNIIVAAETSLVGSIGVLFQYPYV-------KPFLDKL--G-----VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ  179 (293)
Q Consensus       115 A-s~ad~I~a~p~s~vGsiGv~~~~~~~-------~~ll~k~--g-----i~~~~~~~g~~K~~~~p~~~~s~e~~~~~~  179 (293)
                      + .++.+++.....-.|--|+.....++       ++..++.  |     |+..+++-|.+...-.|.+--|+++.+.+.
T Consensus       206 ~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~  285 (358)
T COG1071         206 SRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK  285 (358)
T ss_pred             HHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             64033246775501058872787797799999999999999974899889999875358887779833367989998775


Q ss_pred             HHHHHH
Q ss_conf             776666
Q gi|254780747|r  180 DVVDSS  185 (293)
Q Consensus       180 ~~l~~~  185 (293)
                      . -|++
T Consensus       286 ~-~DPi  290 (358)
T COG1071         286 K-RDPI  290 (358)
T ss_pred             C-CCHH
T ss_conf             0-6949


No 307
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=35.24  E-value=29  Score=15.31  Aligned_cols=40  Identities=20%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9879999758888-888999999999998414786799603323
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMA  107 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~  107 (293)
                      +-.+|++   ||| |.+..+....+.|++++.++|+.-.+-+.-
T Consensus        45 ~pd~ivi---SPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQ   85 (191)
T COG0512          45 KPDAIVI---SPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQ   85 (191)
T ss_pred             CCCEEEE---CCCCCCHHHCCHHHHHHHHHCCCCCEEEECCCHH
T ss_conf             9998998---4899793773618999998608998899874378


No 308
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.87  E-value=33  Score=14.94  Aligned_cols=11  Identities=27%  Similarity=0.422  Sum_probs=3.6

Q ss_pred             CCCCCCHHHHH
Q ss_conf             66678999988
Q gi|254780747|r  166 PFSEVNPKAVQ  176 (293)
Q Consensus       166 p~~~~s~e~~~  176 (293)
                      |+..+.+..++
T Consensus       164 Pt~gLD~~~~~  174 (237)
T PRK11614        164 PSLGLAPIIIQ  174 (237)
T ss_pred             CCCCCCHHHHH
T ss_conf             75579999999


No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=34.74  E-value=33  Score=14.93  Aligned_cols=17  Identities=12%  Similarity=0.100  Sum_probs=6.0

Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             88889999999999984
Q gi|254780747|r   77 GGSAYAGEAIFRAIQKV   93 (293)
Q Consensus        77 GG~~~~~~~i~~ai~~~   93 (293)
                      |.++...+++.+.|.++
T Consensus       173 ~LD~~~~~~i~~~i~~l  189 (264)
T PRK13546        173 VGDQTFAQKCLDKIYEF  189 (264)
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             48999999999999999


No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.73  E-value=33  Score=14.93  Aligned_cols=49  Identities=22%  Similarity=0.384  Sum_probs=23.6

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECC
Q ss_conf             99999998618998799997588888889999999999984-147867996033
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHE  105 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~-k~~kpvva~~~~  105 (293)
                      .+++|++|.++    +=++-||.-|-.-..+..+++++.+. +++||+++-++.
T Consensus        90 ~~~al~rA~~~----aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHr  139 (179)
T COG1618          90 AIPALRRALEE----ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHR  139 (179)
T ss_pred             HHHHHHHHHHC----CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             68999988634----998999433633020088999999996589937999962


No 311
>PRK06460 hypothetical protein; Provisional
Probab=34.63  E-value=24  Score=15.88  Aligned_cols=52  Identities=15%  Similarity=0.133  Sum_probs=29.2

Q ss_pred             HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      .+.++++. +++.|.|+++- .+|...+.-.+.|.+.-++    +.+.+.+++..++.
T Consensus       120 ~~~~~~~~-~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~----~gi~~vVDNT~atP  172 (375)
T PRK06460        120 ENILEKIK-NKRYDVVFVETISNPLLRVIDIPELSKACKE----NGALLIVDSTFATP  172 (375)
T ss_pred             HHHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHH----CCCEEEEECCCCCC
T ss_conf             99999734-7676089998899987640585899999987----49938975674141


No 312
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.41  E-value=30  Score=15.20  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=24.6

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +.++++- +++.+.|+++- .+|-..+.-...|.+.-+   + +.+.+.+++..++.
T Consensus       134 ~~~~~~i-~~~Tklv~~EsP~NPtl~v~DI~~i~~iA~---~-~g~~~vVDNT~atP  185 (424)
T PRK06084        134 AALEALI-DERTKAVFCESIGNPAGNIVDLQALADAAH---R-HGVPLIVDNTVATP  185 (424)
T ss_pred             HHHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHH---H-CCCEEEEECCCCCC
T ss_conf             9999754-876518998438999865037899999998---7-49959954576352


No 313
>pfam00108 Thiolase_N Thiolase, N-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=34.29  E-value=34  Score=14.88  Aligned_cols=154  Identities=18%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             HHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999998618-998799997588888889999999999984147----867996033233223210001110001301353
Q gi|254780747|r   55 ERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSLV  129 (293)
Q Consensus        55 ~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v  129 (293)
                      ..+++..-| +.|..|++=--.+.|..   ..+.+... +.++    -|-++ ++..|+||---+..++.+|-+....++
T Consensus        36 ~~l~r~~~~p~~Id~vi~G~~~~~g~~---~n~aR~~~-l~aGlp~~vp~~t-vnr~C~Sgl~Ai~~Aa~~I~~G~~dv~  110 (264)
T pfam00108        36 AALERAGVKPEDVDEVIMGNVLQAGEG---QNPARQAA-LKAGIPDSVPAVT-INKVCGSGLKAVALAAQAIRAGDADIV  110 (264)
T ss_pred             HHHHHCCCCHHHCCEEEEECCCCCCCC---CHHHHHHH-HHCCCCCCCCEEE-EECHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             999985999688356888436656776---62999999-9769998886689-823201799999999999837987667


Q ss_pred             HHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             455565--3021024567774204225531552112346667-8999988777776666677899998514999889988
Q gi|254780747|r  130 GSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE-VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV  206 (293)
Q Consensus       130 GsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~-~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~  206 (293)
                      -.-|+-  ...|....-      .....+.|+.+.....+.+ +.+..       ......+--+.+++..++++++.++
T Consensus       111 iagGvEsmS~~P~~~~~------~~~~~~~g~~~~~~~~~~~~~~d~~-------~~~~Mg~tAE~~A~~~gisRe~qD~  177 (264)
T pfam00108       111 VAGGVESMSNAPYVLPA------SRVGARMGDAKLVDTMLKDGLTDAF-------NLIHMGITAENVAKKYGISREEQDE  177 (264)
T ss_pred             EEECCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf             87221356545201455------4445676765545322365431100-------4751878899987750899999999


Q ss_pred             HHCCCCCCHHHHHHCCCCCC
Q ss_conf             73498237889987798062
Q gi|254780747|r  207 LSDGRIWTGAEAKKVGLIDV  226 (293)
Q Consensus       207 ~~~g~~~~~~~A~~~GLvD~  226 (293)
                      ++-...-.+.+|.+.|.-++
T Consensus       178 ~A~~Sh~rA~~A~~~G~f~~  197 (264)
T pfam00108       178 FALRSQQKAAAAQKAGKFKD  197 (264)
T ss_pred             HHHHHHHHHHHHHHCCCHHH
T ss_conf             99999999999998396243


No 314
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395   These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. .
Probab=34.06  E-value=34  Score=14.86  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             EEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--------CCCCCCCCCCCCCCCHH
Q ss_conf             9999758888-88899999999999841478679960332332--------23210001110001301
Q gi|254780747|r   68 ALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS--------AGYLISCASNIIVAAET  126 (293)
Q Consensus        68 ~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S--------~~Y~iAs~ad~I~a~p~  126 (293)
                      +-++.|-||- |+   ..++.+|+...|. -.+=||+++.|.-        ..--+|+.|+.+.|-|+
T Consensus       327 ~h~VQiKTPDvGg---~~~~arA~~yCk~-n~~gAYvGGtCnET~~SA~~~~hv~~At~A~~vLAKPG  390 (414)
T TIGR01502       327 AHLVQIKTPDVGG---VADIARAVLYCKA-NDVGAYVGGTCNETDLSARASVHVALATDADQVLAKPG  390 (414)
T ss_pred             CCEEEEECCCCCC---HHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_conf             2357762487456---5569999987403-88202256756632344666534554423466522899


No 315
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=33.96  E-value=34  Score=14.85  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |++..+....+.++.+..+.|+.-.+-+.
T Consensus        43 ~pd~IiL---SpGPg~p~~~~~~~~~~~~~~~~iPILGIClG~   82 (195)
T PRK07649         43 KPDFLMI---SPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGH   82 (195)
T ss_pred             CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf             9898998---899999578476146799752899784302999


No 316
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=33.84  E-value=34  Score=14.84  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             CEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf             799997588--------88888999999999998414-786799603323322321000-11100013013534555653
Q gi|254780747|r   67 TALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC-ASNIIVAAETSLVGSIGVLF  136 (293)
Q Consensus        67 k~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs-~ad~I~a~p~s~vGsiGv~~  136 (293)
                      |-||+.+.+        -|-.......+++.|.+++. ++.|+..+++.....|+..+. ..++   .+...+|..+..+
T Consensus         1 kRIViKiGGs~L~~~~~~~ld~~~I~~la~~I~~l~~~G~eVviVvggG~i~rg~~~~~~~~~~---~~~d~~g~lat~~   77 (231)
T cd04254           1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDR---ATADYMGMLATVI   77 (231)
T ss_pred             CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHCCCCC---CHHHHHHHHHHHH
T ss_conf             9599995166607899988599999999999999997798699998177301242245346663---5188999999999


Q ss_pred             CCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf             021024567774204225531552112346
Q gi|254780747|r  137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSP  166 (293)
Q Consensus       137 ~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p  166 (293)
                      +..-.+..|.+.|++...++.-+.....++
T Consensus        78 n~~ll~~al~~~g~~~~~~t~~~~~~~~~~  107 (231)
T cd04254          78 NALALQDALESLGVKTRVMSAIPMQGVAEP  107 (231)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf             999999999867998799742234422231


No 317
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=33.52  E-value=35  Score=14.80  Aligned_cols=16  Identities=19%  Similarity=0.507  Sum_probs=6.0

Q ss_pred             CCCCCCCHHHHHHHHH
Q ss_conf             4666789999887777
Q gi|254780747|r  165 SPFSEVNPKAVQMMQD  180 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~  180 (293)
                      ||+..+.++..+.+..
T Consensus       164 EpTs~LD~~te~~i~~  179 (275)
T cd03289         164 EPSAHLDPITYQVIRK  179 (275)
T ss_pred             CCCCCCCHHHHHHHHH
T ss_conf             9766899999999999


No 318
>PRK13238 tnaA tryptophanase; Provisional
Probab=33.02  E-value=36  Score=14.75  Aligned_cols=120  Identities=14%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC-------------
Q ss_conf             99999999986189987999975--8888888999999999998414-7867996033233223210-------------
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI-------------  114 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i-------------  114 (293)
                      +.+-+.|+.-. -++|.-|++.|  ||.||.+...+.|++.=+-.++ +.|++--..-+|- -+|+|             
T Consensus       164 ~kLe~~i~~~g-~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~~ip~~lDaaRfaE-NAyFIk~RE~gY~d~si~  241 (461)
T PRK13238        164 EKLEALIEEVG-ADNIPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVLDAARFAE-NAYFIKQREPGYKDKSIK  241 (461)
T ss_pred             HHHHHHHHHHC-CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHH-HHHHHHHCCCCCCCCCHH
T ss_conf             99999998738-4465489999862687881646899999999999829959986566766-457887325312579999


Q ss_pred             ------CCCCCCCCCCH--HHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             ------00111000130--135345556530210245677742042255315521123466678999988777
Q gi|254780747|r  115 ------SCASNIIVAAE--TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ  179 (293)
Q Consensus       115 ------As~ad~I~a~p--~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~  179 (293)
                            .+.||-++|+-  .++ ..||-....-+-.+++++....  .+-.--|    -.|-.|+-.+.+.+.
T Consensus       242 eI~rEmfs~aDg~tmSaKKD~~-vniGG~l~~~d~~~l~~~~~~~--~i~~EGf----~TYGGlaGRDmeAlA  307 (461)
T PRK13238        242 EITREMFSYADGLTMSAKKDAM-VNIGGLLCFKDDSDLYTKCRTL--CILYEGF----PTYGGLAGRDMEALA  307 (461)
T ss_pred             HHHHHHHHHHHEEEEEECCCCE-ECCCCEEEECCHHHHHHHHHHH--EEECCCC----CCCCCCCHHHHHHHH
T ss_conf             9999998452379998330121-0442289966759999998744--2420587----566883387799997


No 319
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=32.65  E-value=36  Score=14.71  Aligned_cols=89  Identities=21%  Similarity=0.386  Sum_probs=51.7

Q ss_pred             CCEEEEECCCCCCCHH---------HHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH----
Q ss_conf             8799997588888889---------9999999999841478--679960332332232100011100013013534----
Q gi|254780747|r   66 ATALIVSLSSPGGSAY---------AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG----  130 (293)
Q Consensus        66 ik~ivL~i~SpGG~~~---------~~~~i~~ai~~~k~~k--pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG----  130 (293)
                      -.-|++.++.-||...         .++.++++|.++.++|  --+-++-+.|..-+.|--++.-.+.+--+|.+|    
T Consensus       138 ~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ysPNvLavgsSeig~ssy  217 (382)
T COG5206         138 SSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSPNVLAVGSSEIGQSSY  217 (382)
T ss_pred             CCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             67679998267873002326587762677899999998763224289996303321344312488668984052687543


Q ss_pred             ------HHHH--HHCCC-HHHHHHHHHHHCCEE
Q ss_conf             ------5556--53021-024567774204225
Q gi|254780747|r  131 ------SIGV--LFQYP-YVKPFLDKLGVSIKS  154 (293)
Q Consensus       131 ------siGv--~~~~~-~~~~ll~k~gi~~~~  154 (293)
                            .||+  +-..+ ++-+.++|++++...
T Consensus       218 Shhsd~~IgvaVIDrFty~~l~fle~id~~skl  250 (382)
T COG5206         218 SHHSDSLIGVAVIDRFTYFFLKFLEKIDIGSKL  250 (382)
T ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
T ss_conf             334222665777612207999998534767726


No 320
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.38  E-value=36  Score=14.69  Aligned_cols=98  Identities=17%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             86999999999861899879999758888888999999999998414786799603323322321000111000130135
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      +++++++.|+++.+|++|.||++.+-=|.+-  ..+++.++|.-   .|-|=.+-.   .+-|++ +. .+..+.+.+. 
T Consensus        75 s~~el~~~I~~LN~d~~V~GIiVQlPLP~~i--d~~~i~~~I~p---~KDVDGl~~---~N~G~L-~~-~~~~~~PcTp-  143 (288)
T PRK10792         75 SEAELLALIDTLNADNTIDGILVQLPLPAGI--DNVKVLERIHP---DKDVDGFHP---YNVGRL-CQ-RAPRLRPCTP-  143 (288)
T ss_pred             CHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CHHHHHHHCCC---CCCCCCCCH---HHHHHH-CC-CCCCCCCCCH-
T ss_conf             9999999999996799878637836899885--77999851498---889887998---899877-06-9986678719-


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCC---EEEEECCCCCCCCCC
Q ss_conf             345556530210245677742042---255315521123466
Q gi|254780747|r  129 VGSIGVLFQYPYVKPFLDKLGVSI---KSVKSSPMKAEPSPF  167 (293)
Q Consensus       129 vGsiGv~~~~~~~~~ll~k~gi~~---~~~~~g~~K~~~~p~  167 (293)
                                ...-++|+++|++.   +++-.|.-.--+-|.
T Consensus       144 ----------~av~~lL~~y~i~~~Gk~vvVvGrS~iVGkPl  175 (288)
T PRK10792        144 ----------RGIVTLLERYNIDTFGLNAVVIGASNIVGRPM  175 (288)
T ss_pred             ----------HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH
T ss_conf             ----------99999999747563788899956766343899


No 321
>PRK02628 nadE NAD synthetase; Reviewed
Probab=32.30  E-value=37  Score=14.68  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             CCEEEEECCCCCCCC-CCCCC-CCCCCCCCHHHHHHHHHHHH--------CCCHHHHHHHHHHHCCEEEEECC-----CC
Q ss_conf             867996033233223-21000-11100013013534555653--------02102456777420422553155-----21
Q gi|254780747|r   97 KPVITEVHEMAASAG-YLISC-ASNIIVAAETSLVGSIGVLF--------QYPYVKPFLDKLGVSIKSVKSSP-----MK  161 (293)
Q Consensus        97 kpvva~~~~~~~S~~-Y~iAs-~ad~I~a~p~s~vGsiGv~~--------~~~~~~~ll~k~gi~~~~~~~g~-----~K  161 (293)
                      ++++.-..+..-|+- .++++ +.|..=.++..+   +|+.|        ..-+.+.|.+.+||+.+.+-..+     ++
T Consensus       363 ~~vViGLSGGiDSaLaLLVaa~A~d~Lg~~r~~V---~~vtMPs~~TS~~S~~dA~~La~~LGi~~~~I~I~~a~~~~~~  439 (678)
T PRK02628        363 KKVVIGISGGLDSTLALLVAAKAFDRLGLPRKNI---LAYTMPGFGTTDRTKNNAVALMKALGVTAREIDIRPAALQMLK  439 (678)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCE---EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
T ss_conf             8189967776447999999999999848971224---8997788765787899999999972997799762999999999


Q ss_pred             CCCCCC
Q ss_conf             123466
Q gi|254780747|r  162 AEPSPF  167 (293)
Q Consensus       162 ~~~~p~  167 (293)
                      +.+.||
T Consensus       440 di~~~~  445 (678)
T PRK02628        440 DIGHPF  445 (678)
T ss_pred             HHCCHH
T ss_conf             844422


No 322
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=32.27  E-value=30  Score=15.23  Aligned_cols=63  Identities=10%  Similarity=0.132  Sum_probs=27.8

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV  122 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~  122 (293)
                      +.++++-+ ++.|.|++.- .+|-..+.-...|.+.-+   +. .+.+.+++..++.-+.  +...+|=++
T Consensus       128 ~~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~a~---~~-g~~~vvDNT~atP~~~~Pl~~GaDivv  193 (386)
T PRK08045        128 QALRAALA-EKPKLVLVESPSNPLLRVVDIAKICHLAR---EA-GAVSVVDNTFLSPALQNPLALGADLVL  193 (386)
T ss_pred             HHHHHHCC-CCCEEEEEECCCCCCCEECCCHHHHHHHH---HC-CCEEEEECCCCCHHCCCCCCCCCCEEE
T ss_conf             99997537-78559999779998761057699999999---76-998998275232311273003887899


No 323
>PRK11096 ansB L-asparaginase II; Provisional
Probab=32.25  E-value=37  Score=14.67  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             CCCCCCCCEEEEEEEEEEECC----------------HHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHH
Q ss_conf             555677872899997666238----------------6999999999861899879999-75888888899999999999
Q gi|254780747|r   29 SHVEDNSPHVARIAIRGQIED----------------SQELIERIERISRDDSATALIV-SLSSPGGSAYAGEAIFRAIQ   91 (293)
Q Consensus        29 ~~~~~~~~~i~~i~i~G~I~~----------------~~~l~~~l~~a~~d~~ik~ivL-~i~SpGG~~~~~~~i~~ai~   91 (293)
                      .......|+|++|.--|+|.+                .+++++.+-...+--++...-+ .|+|.--++..-.+|++.|.
T Consensus        16 ~g~~~~lP~I~ii~TGGTIA~~~~~~t~~~y~ag~l~~~~Ll~~vP~l~~~a~i~~~q~~nidS~~mtp~~w~~La~~I~   95 (347)
T PRK11096         16 SGAAFALPNITILATGGTIAGGGDSATKSNYTAGKVGVDNLVNAVPQLKDIANVKGEQVVNIGSQDMNDEVWLTLAKKIN   95 (347)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             23346798079994787221354677778755787799999985830202032899983467954389999999999999


Q ss_pred             HH
Q ss_conf             84
Q gi|254780747|r   92 KV   93 (293)
Q Consensus        92 ~~   93 (293)
                      +.
T Consensus        96 ~~   97 (347)
T PRK11096         96 TD   97 (347)
T ss_pred             HH
T ss_conf             86


No 324
>TIGR02922 TIGR02922 conserved hypothetical protein TIGR02922; InterPro: IPR014271   Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO..
Probab=31.84  E-value=22  Score=16.10  Aligned_cols=28  Identities=14%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             98414786799603323322321000111000
Q gi|254780747|r   91 QKVKNRKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        91 ~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      ++||++|-++|.+++.+    -.|-+-+|+|+
T Consensus        41 ~eFk~GKsIiAV~EG~i----~ilNsvGdr~~   68 (69)
T TIGR02922        41 QEFKKGKSIIAVCEGEI----TILNSVGDRVL   68 (69)
T ss_pred             CCCCCCCEEEEEECCCE----EEECCCCCEEC
T ss_conf             75668986899824866----88503551605


No 325
>PRK01059 ATP:guanido phosphotransferase; Provisional
Probab=31.49  E-value=38  Score=14.59  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             8888889999999999984147867996033233223210001110-------001301353455565302102456777
Q gi|254780747|r   75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI-------IVAAETSLVGSIGVLFQYPYVKPFLDK  147 (293)
Q Consensus        75 SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~-------I~a~p~s~vGsiGv~~~~~~~~~ll~k  147 (293)
                      .+|+....+-+....+.+.=.++--+||-..    =||+-+|+.+-       ++++--+.+    ...+...+-..+.|
T Consensus       127 ~~G~~L~~a~~~~~~id~~le~~l~fAfd~~----~GYLTsCPTNlGTGlRASVmlHLPaL~----~t~~i~~i~~~~~~  198 (351)
T PRK01059        127 DPGLQLEEALEQANQIDDLLEEKLDYAFDEK----LGYLTSCPTNVGTGLRASVMLHLPALV----LTKRINRILQAINQ  198 (351)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC----CCEECCCCCCCCCCEEEEEEEECHHHH----HHHHHHHHHHHHHH
T ss_conf             5888999999999999999970378505588----631123887665353899998546778----77579999999875


Q ss_pred             HHHCCEEEEECCCCCCCCCCC-------CCCHHH
Q ss_conf             420422553155211234666-------789999
Q gi|254780747|r  148 LGVSIKSVKSSPMKAEPSPFS-------EVNPKA  174 (293)
Q Consensus       148 ~gi~~~~~~~g~~K~~~~p~~-------~~s~e~  174 (293)
                      +|+.++.+.-..-+..++.|+       .+||++
T Consensus       199 ~Gl~vrglyGegsea~GniyqISNq~TLG~sEee  232 (351)
T PRK01059        199 LGLTVRGIYGEGSEALGNIYQISNQITLGKSEEE  232 (351)
T ss_pred             CCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHH
T ss_conf             7868862247886555657898504436899999


No 326
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049   This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=31.48  E-value=38  Score=14.59  Aligned_cols=95  Identities=14%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHH----HHCCCCCCHHHHHH--CCCCCCCCCHHHHHHHHHH
Q ss_conf             78999988777776666677899998514999889---988----73498237889987--7980623898999999997
Q gi|254780747|r  169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLV----LSDGRIWTGAEAKK--VGLIDVVGGQEEVWQSLYA  239 (293)
Q Consensus       169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~---~~~----~~~g~~~~~~~A~~--~GLvD~ig~~~~a~~~l~~  239 (293)
                      +=+|.--|.+..-...++.+.+.....-.+++..=   +++    ++|. +.|-+..++  .|++++|---.+-.++++.
T Consensus       282 KKNPD~aELiRGK~Grv~G~L~g~L~~lKalP~aYNrDlQEdkE~LFD~-v~t~~~~~~~~~~~l~~i~vn~er~~e~A~  360 (469)
T TIGR00838       282 KKNPDVAELIRGKTGRVIGNLTGLLTILKALPLAYNRDLQEDKEPLFDA-VKTVELSLEVMTGMLDTIKVNKERMEEAAS  360 (469)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             7772079999875526899999999997112332351001378367889-999999999999998308158789999864


Q ss_pred             HCCCCCCCCEEECCCCC-CHHHHHHHH
Q ss_conf             41877653012014421-124556511
Q gi|254780747|r  240 LGVDQSIRKIKDWNPPK-NYWFCDLKN  265 (293)
Q Consensus       240 ~~~~~~~~~~~~~~~~~-~~~~~~~~~  265 (293)
                      . +....+.+.+|--++ +-.|+....
T Consensus       361 ~-~f~~ATdLADyLV~k~GVPFR~AH~  386 (469)
T TIGR00838       361 A-GFSNATDLADYLVRKRGVPFREAHH  386 (469)
T ss_pred             C-CCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf             4-8870788999998347998067789


No 327
>pfam01990 ATP-synt_F ATP synthase (F/14-kDa) subunit. This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F.
Probab=31.37  E-value=38  Score=14.58  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             8699999999986189987999975888888899999999999841478679960332332
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS  109 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S  109 (293)
                      +.+++.+.+++..+|+++ ||++--+      .-++.+.+.+.++++..|++.-+.+.-.+
T Consensus        25 ~~~e~~~~l~~l~~~~d~-gII~ite------~~a~~i~~~i~~~~~~~P~Ii~IP~~~g~   78 (92)
T pfam01990        25 SPEEAEEAFEKLLEREDI-GIILITE------DIAEEIRETIDRYESVLPAILEIPSKDGP   78 (92)
T ss_pred             CHHHHHHHHHHHHCCCCE-EEEEECH------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             989999999998548985-9999748------99998899999847688879996899999


No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=31.24  E-value=38  Score=14.57  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf             69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL  128 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~  128 (293)
                      .++.+.-....+.++++  ++|+=-+.|-++...+++.+.|+++++.+..+.++.+..    ..+...||+|.. ..+-+
T Consensus       146 ~kQrv~iA~aL~~~p~l--liLDEPt~~Ld~~~~~~l~~~l~~l~~~g~til~isH~l----~~~~~~~drv~vl~~G~i  219 (501)
T PRK10762        146 DQQMVEIAKVLSFESKV--IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRM----KEIFEICDDVTVLRDGQF  219 (501)
T ss_pred             HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHCCCCCEEECCCEE
T ss_conf             99999999998459987--753587557887888999998878774484147751425----766421464113127818


No 329
>KOG1349 consensus
Probab=31.22  E-value=38  Score=14.57  Aligned_cols=68  Identities=24%  Similarity=0.385  Sum_probs=40.9

Q ss_pred             CCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             18998799997588888889---------9999999999841478--679960332332232100011100013013534
Q gi|254780747|r   62 RDDSATALIVSLSSPGGSAY---------AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG  130 (293)
Q Consensus        62 ~d~~ik~ivL~i~SpGG~~~---------~~~~i~~ai~~~k~~k--pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG  130 (293)
                      .|++ .-|+++++.-||...         .+++++++|+...+++  .-+-++-+.|..+..|=-...--|.+-.+|.+|
T Consensus       135 tDe~-SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~~g  213 (309)
T KOG1349         135 TDEG-SNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSLVG  213 (309)
T ss_pred             CCCC-CCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCEEEEEECCCC
T ss_conf             3677-767999816787520332668876467889999999986323248998321106778875138975897412258


No 330
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=31.15  E-value=38  Score=14.56  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             8728999976662386999999999861899879999758888888999999999998414786799603
Q gi|254780747|r   35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH  104 (293)
Q Consensus        35 ~~~i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~  104 (293)
                      .|-|+|+++.|.-.+.-.++..+.....|.+|+|||+.=  .+|. ...+-+.++|.+  .+.||+-++.
T Consensus       115 ~PViLViD~~~~~~s~aa~v~G~~~~~~~~~I~GvIlNk--~~g~-~h~~ll~~~ie~--~gvpvlG~lP  179 (451)
T PRK01077        115 APVVLVVDASGMAQSAAALVLGFARFDPDLNIAGVILNR--VGSE-RHYQLLREALEE--LGLPVLGALP  179 (451)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCCH-HHHHHHHHHHHH--CCCCEEEEEC
T ss_conf             988999846620899999999999759778774899624--7876-689999999986--3995798615


No 331
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase; InterPro: IPR011780    This family consists of D-serine ammonia-lyases, pyridoxal-phosphate enzymes that convert D-serine to pyruvate and NH3. These enzyme are also called D-serine dehydratase and D-serine deaminase and was previously designated 4.2.1.14 from EC. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.; GO: 0008721 D-serine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0046416 D-amino acid metabolic process.
Probab=30.91  E-value=39  Score=14.53  Aligned_cols=123  Identities=17%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             869999999998618998799997588---888889999999999984---14786799603323322321000111000
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIV  122 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~~---k~~kpvva~~~~~~~S~~Y~iAs~ad~I~  122 (293)
                      +-..+-..|++..+.+=.--++|..||   -.||.=+--=||+-|+..   +=..=.+.--+||.-    +.-.-+...|
T Consensus        75 ev~~m~~~Le~~Y~~~~~G~l~LK~DshLPisGSIKARGGiYEVL~hAE~LAle~GLl~l~DDYs~----L~~~~f~~FF  150 (431)
T TIGR02035        75 EVAAMQKKLEKKYQQEIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLKLDDDYSI----LAEKKFKDFF  150 (431)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHH----HCCHHHHHHH
T ss_conf             999999999997437877630020476788443110465077899999999987076655631656----3045553113


Q ss_pred             C------CHHHHHH-HHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHH
Q ss_conf             1------3013534-555653021024567774204225531552112346667899998877777666-------6677
Q gi|254780747|r  123 A------AETSLVG-SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS-------SYHW  188 (293)
Q Consensus       123 a------~p~s~vG-siGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~-------~~~~  188 (293)
                      +      -.++..| |||.+.....|+       +.+                +||...|++-+.+|..       +-..
T Consensus       151 s~Y~IaVGSTGNLGLSIGI~~AalGF~-------v~V----------------HMSADAk~WKKd~LR~~GVtV~EYe~D  207 (431)
T TIGR02035       151 SRYSIAVGSTGNLGLSIGIISAALGFQ-------VTV----------------HMSADAKQWKKDKLRSKGVTVVEYESD  207 (431)
T ss_pred             HHEEEEECCCCHHHHHHHHHHHHCCCE-------EEE----------------EECHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf             010232115540046799997520174-------898----------------604656677899887369679985030


Q ss_pred             HHHHHHHCCC
Q ss_conf             8999985149
Q gi|254780747|r  189 FVRLVSESRN  198 (293)
Q Consensus       189 f~~~Va~~R~  198 (293)
                      |=..|.++|+
T Consensus       208 Y~~AVeeGR~  217 (431)
T TIGR02035       208 YSVAVEEGRK  217 (431)
T ss_pred             HHHHHHHHHH
T ss_conf             4588887656


No 332
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=30.81  E-value=39  Score=14.52  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCC
Q ss_conf             999986189987999975-8888888999999999998414786799603323322321--00011100
Q gi|254780747|r   56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNII  121 (293)
Q Consensus        56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I  121 (293)
                      .++++- +++.|.|+++- .+|...+.-...|.+.-++    +.+.+.+++..++.-+.  +.-.||=+
T Consensus       137 ~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~----~g~~~vVDNTfatP~~~~Pl~~GaDiv  200 (405)
T PRK08776        137 SLADAL-AQSPKLVLIETPSNPLLRITDLRFVIEAAHK----VGALTVVDNTFLSPALQKPLEFGADLV  200 (405)
T ss_pred             HHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHHH----CCCEEEEECCCCCCCCCCHHHHCCCEE
T ss_conf             999743-7776599998899998860275999999987----399799979976400268265279789


No 333
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=30.67  E-value=39  Score=14.51  Aligned_cols=17  Identities=18%  Similarity=0.333  Sum_probs=9.6

Q ss_pred             EEEEEEEEEECCHHHHH
Q ss_conf             89999766623869999
Q gi|254780747|r   38 VARIAIRGQIEDSQELI   54 (293)
Q Consensus        38 i~~i~i~G~I~~~~~l~   54 (293)
                      +-..+.+|+|+..+...
T Consensus         4 ~if~DFDGTIT~~D~~~   20 (219)
T PRK09552          4 QVFCDFDGTITNNDNII   20 (219)
T ss_pred             EEEECCCCCCCCHHHHH
T ss_conf             89944898877206389


No 334
>KOG2245 consensus
Probab=30.45  E-value=39  Score=14.48  Aligned_cols=27  Identities=11%  Similarity=0.058  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             899998877777666667789999851
Q gi|254780747|r  170 VNPKAVQMMQDVVDSSYHWFVRLVSES  196 (293)
Q Consensus       170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~  196 (293)
                      -++|+.-.+..+++.-..+.+..+.++
T Consensus       377 ~~~ed~l~w~G~vESriR~Lv~klE~~  403 (562)
T KOG2245         377 ATEEDLLKWVGWVESRIRQLVLKLERN  403 (562)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             686887655358999999999998762


No 335
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=30.01  E-value=40  Score=14.44  Aligned_cols=18  Identities=28%  Similarity=0.100  Sum_probs=7.3

Q ss_pred             CHHHHHHHHHHHCCCCCC
Q ss_conf             989999999974187765
Q gi|254780747|r  229 GQEEVWQSLYALGVDQSI  246 (293)
Q Consensus       229 ~~~~a~~~l~~~~~~~~~  246 (293)
                      +..+-+.-+..+...++.
T Consensus       157 G~rqrv~ia~aL~~~P~l  174 (236)
T cd03267         157 GQRMRAEIAAALLHEPEI  174 (236)
T ss_pred             HHHHHHHHHHHHHCCCCE
T ss_conf             999999999999679999


No 336
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=29.81  E-value=40  Score=14.42  Aligned_cols=155  Identities=17%  Similarity=0.058  Sum_probs=71.2

Q ss_pred             HHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999998618-998799997588888889999999999984147----867996033233223210001110001301353
Q gi|254780747|r   55 ERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSLV  129 (293)
Q Consensus        55 ~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v  129 (293)
                      ..++++.-| +.|..|++=--.+.|.  +...+.+... ++++    -|-++ ++..|+||---+..+++.|-+-...++
T Consensus        39 ~~l~r~gi~p~~ID~Vi~G~v~~~g~--~g~n~aR~aa-L~AGlp~~vpa~T-Vnr~C~SGl~Ai~~aa~~I~~G~~dvv  114 (417)
T PRK06025         39 ALAERNGLNTADVDDIIWSTSSQRGK--QGGDLGRMAA-LDAGYDIKASGVT-LDRFCGGGITSVNLAAAQIMSGMEDLV  114 (417)
T ss_pred             HHHHHHCCCHHHCCEEEEEECCCCCC--CCCCHHHHHH-HHCCCCCCCCEEE-ECCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99987098979989899980777654--3465999999-9679998886078-757464089999999999976999867


Q ss_pred             HHHHHHHC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             45556530--2102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r  130 GSIGVLFQ--YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL  207 (293)
Q Consensus       130 GsiGv~~~--~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~  207 (293)
                      =.-|+-..  .+.+...-...+........+        ...+.+..-+       .....--+.+++..++++++.+++
T Consensus       115 iAGGvEsmS~~p~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~-------~~mg~tAE~~A~~~gIsRe~qD~~  179 (417)
T PRK06025        115 IAGGTEMMSYTAAMAAEEMAAGKPPLGMGSG--------NLRLRALHPQ-------SHQGVCGDAIATMEGITREALDAL  179 (417)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--------CCCHHHCCCC-------CCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             8953423676630024100246885434466--------6202322798-------741688999999869799999999


Q ss_pred             HCCCCCCHHHHHHCCCCC-CCC
Q ss_conf             349823788998779806-238
Q gi|254780747|r  208 SDGRIWTGAEAKKVGLID-VVG  228 (293)
Q Consensus       208 ~~g~~~~~~~A~~~GLvD-~ig  228 (293)
                      +-...-.+.+|.+.|+-+ +|.
T Consensus       180 A~~Sh~rA~~A~~~G~f~~EIv  201 (417)
T PRK06025        180 GLESQRRAARAIKEGRFDKSLV  201 (417)
T ss_pred             HHHHHHHHHHHHHCCCCHHHEE
T ss_conf             9999999999998399622111


No 337
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=29.51  E-value=41  Score=14.38  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             88999999999998414786799603323322321------------000111000130135345556530210245677
Q gi|254780747|r   79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL------------ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD  146 (293)
Q Consensus        79 ~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~------------iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~  146 (293)
                      .+.-.+-+++++++.-..-..+.+.+++-.=-..+            |-.+=.+| =.|.+.-.|.+--... -|.+.|+
T Consensus        40 Ev~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~I-PdP~g~~~Sya~h~~~-~~~~~L~  117 (355)
T pfam01921        40 EVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRI-PDPFGCHESYAEHFNA-PFLEFLD  117 (355)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEC-CCCCCCCCCHHHHHHH-HHHHHHH
T ss_conf             1799999999999749876999982156510137889999899987369752134-7988874559999999-9999999


Q ss_pred             HHHHCCEEEEE
Q ss_conf             74204225531
Q gi|254780747|r  147 KLGVSIKSVKS  157 (293)
Q Consensus       147 k~gi~~~~~~~  157 (293)
                      ++||+++.+++
T Consensus       118 ~~gi~~ef~s~  128 (355)
T pfam01921       118 RFGIEYEFISA  128 (355)
T ss_pred             HCCCEEEEEEH
T ss_conf             83982899867


No 338
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=29.47  E-value=41  Score=14.38  Aligned_cols=63  Identities=19%  Similarity=0.462  Sum_probs=39.9

Q ss_pred             EEEEEEEEEEECCHHHHHHHHHHH-----------HCCCCCCEEEEECCCCCCCHHHHHH------HHHHHHHHC-CCCC
Q ss_conf             289999766623869999999998-----------6189987999975888888899999------999999841-4786
Q gi|254780747|r   37 HVARIAIRGQIEDSQELIERIERI-----------SRDDSATALIVSLSSPGGSAYAGEA------IFRAIQKVK-NRKP   98 (293)
Q Consensus        37 ~i~~i~i~G~I~~~~~l~~~l~~a-----------~~d~~ik~ivL~i~SpGG~~~~~~~------i~~ai~~~k-~~kp   98 (293)
                      +|.++.+.|...+-   ++.++++           .+-+.+.|+++    |||..+....      +.+.|+++. +++|
T Consensus         2 ~IGVLalQG~v~EH---~~~l~~~~~~e~~~Vk~~~dL~~~d~LIi----PGGESTTi~rL~~~~gl~e~l~~~~~~G~P   74 (194)
T COG0311           2 KIGVLALQGAVEEH---LEALEKAGGAEVVEVKRPEDLEGVDGLII----PGGESTTIGRLLKRYGLLEPLREFIADGLP   74 (194)
T ss_pred             EEEEEEECCCHHHH---HHHHHHHCCCCEEEECCHHHHCCCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             47999850468999---99998605873599717788553767895----495078999999873848999999976996


Q ss_pred             EEEEECCC
Q ss_conf             79960332
Q gi|254780747|r   99 VITEVHEM  106 (293)
Q Consensus        99 vva~~~~~  106 (293)
                      ++.-|.++
T Consensus        75 v~GTCAGl   82 (194)
T COG0311          75 VFGTCAGL   82 (194)
T ss_pred             EEEECHHH
T ss_conf             47751425


No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.25  E-value=41  Score=14.36  Aligned_cols=51  Identities=8%  Similarity=0.173  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99999999986189987999975888888899999999999841478679960
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV  103 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~  103 (293)
                      ++.+.-.+....++.+  ++|+=-+-|-++...+++.+.|+++++++..+..+
T Consensus        86 kqrv~iA~al~~~p~i--lilDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~v  136 (157)
T cd00267          86 RQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV  136 (157)
T ss_pred             HHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999999999709999--99969876689999999999999999689999999


No 340
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=29.12  E-value=41  Score=14.34  Aligned_cols=146  Identities=20%  Similarity=0.278  Sum_probs=72.3

Q ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf             9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r   41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA  117 (293)
Q Consensus        41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~  117 (293)
                      +++-|.-.+..+.++.+.+.    +..-++++++-||-.....-++.+.|++..-..+|+++....  +..|.   +.+.
T Consensus        29 ~~vvg~a~~~~~~~~~~~~~----~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~vivls~~~--~~~~v~~al~~G  102 (216)
T PRK10840         29 VNVVGEFEDSTALINNLPKL----DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNN--NPAILSAVLDLD  102 (216)
T ss_pred             CEEEEEECCHHHHHHHHHHC----CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCC--CHHHHHHHHHCC
T ss_conf             68999879999999998623----989899826779998878999999999858998089984778--789999998589


Q ss_pred             CCCCCC---CHHHHHHHHHHHHCC-CHH----HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             110001---301353455565302-102----456777420422553155211234666789999887777766666778
Q gi|254780747|r  118 SNIIVA---AETSLVGSIGVLFQY-PYV----KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF  189 (293)
Q Consensus       118 ad~I~a---~p~s~vGsiGv~~~~-~~~----~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f  189 (293)
                      ++-.+.   ++..++-.|-.+... .++    ..++++.       ..+++     .-.++|+.++|.++-+.++.-   
T Consensus       103 a~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~~~~l~~~-------~~~~~-----~~~~LT~RE~eVL~lla~G~s---  167 (216)
T PRK10840        103 IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKI-------SAGGY-----GDKRLSPKESEVLRLFAEGFL---  167 (216)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-------CCCCC-----CCCCCCHHHHHHHHHHHCCCC---
T ss_conf             748998789999999999999879943969999999972-------05888-----778999899999999986999---


Q ss_pred             HHHHHHCCCCCHHHHHHH
Q ss_conf             999985149998899887
Q gi|254780747|r  190 VRLVSESRNIPYDKTLVL  207 (293)
Q Consensus       190 ~~~Va~~R~~~~~~~~~~  207 (293)
                      ...||+.-+++..+++..
T Consensus       168 nkeIA~~L~iS~~TV~~h  185 (216)
T PRK10840        168 VTEIAKKLNRSIKTISSQ  185 (216)
T ss_pred             HHHHHHHHCCCHHHHHHH
T ss_conf             999998969899999999


No 341
>pfam02065 Melibiase Melibiase.
Probab=28.97  E-value=42  Score=14.32  Aligned_cols=85  Identities=9%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             EEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC-------CCCC----HHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9999766623869999999998618998799997588-------8888----8999999999998414786799603323
Q gi|254780747|r   39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSS-------PGGS----AYAGEAIFRAIQKVKNRKPVITEVHEMA  107 (293)
Q Consensus        39 ~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S-------pGG~----~~~~~~i~~ai~~~k~~kpvva~~~~~~  107 (293)
                      +++++.-+-+ .+-+.+.+.+.-.+..|.=|--+.|-       ++..    ......+++.+.++++.-|-+.+ + .|
T Consensus       158 ~vLDl~~peV-~~~l~~~i~~ll~~~~I~YiKWDmNR~~~~~~s~~~~~~~~h~~~~glY~ll~~L~~~~P~v~i-E-~C  234 (395)
T pfam02065       158 LVLDLSNPDV-VDYIYEEMDQLLGNNPIDYIKWDMNRNLTEIGSPRLPAEAYHRYILGLYRLFDRLTTAFPHILF-E-SC  234 (395)
T ss_pred             EEEECCCHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE-E-EC
T ss_conf             5775798899-9999999999998689987986057787878998886088999999999999999987999689-8-16


Q ss_pred             CCCC----CCCCCCCCCCCCCHH
Q ss_conf             3223----210001110001301
Q gi|254780747|r  108 ASAG----YLISCASNIIVAAET  126 (293)
Q Consensus       108 ~S~~----Y~iAs~ad~I~a~p~  126 (293)
                      +|||    |-+...++.+|.+.+
T Consensus       235 ssGGgR~D~gmL~~~~~~W~SD~  257 (395)
T pfam02065       235 SSGGGRFDPGMLYYAPQIWTSDN  257 (395)
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCC
T ss_conf             89877567467853782112489


No 342
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=28.96  E-value=30  Score=15.21  Aligned_cols=51  Identities=14%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r   55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA  110 (293)
Q Consensus        55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~  110 (293)
                      +.++++-. ++.+.|++.- .+|-..+.-.+.|.+.-    ..+.+.+.+++..++.
T Consensus       127 ~~~~~~i~-~~Tkli~~Esp~NP~l~v~Di~~i~~iA----~~~g~~~vvDNT~atP  178 (366)
T PRK08247        127 KAIEQAIT-PNTKAIFIETPTNPLMQETDIAAIAKIA----KKHGLLLIVDNTFYTP  178 (366)
T ss_pred             HHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHH----HHCCCEEEECCCCCCC
T ss_conf             99997538-6754999855999853501599999998----6467049841773441


No 343
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes.  It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=28.91  E-value=42  Score=14.32  Aligned_cols=25  Identities=8%  Similarity=0.124  Sum_probs=18.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6789999887777766666778999
Q gi|254780747|r  168 SEVNPKAVQMMQDVVDSSYHWFVRL  192 (293)
Q Consensus       168 ~~~s~e~~~~~~~~l~~~~~~f~~~  192 (293)
                      .++++++++.+..++.+..+.|-..
T Consensus       192 ~~l~~~d~~~L~~~i~~~~~~t~s~  216 (232)
T cd00981         192 FELTEEDLEFIEKYIEEFCKEFGYD  216 (232)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf             2599999999999999999998986


No 344
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=28.49  E-value=42  Score=14.27  Aligned_cols=17  Identities=12%  Similarity=0.434  Sum_probs=6.0

Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             46667899998877777
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDV  181 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~  181 (293)
                      ||+..+.+..++.+.++
T Consensus       167 EPTs~LD~~~~~~i~~l  183 (242)
T PRK11124        167 EPTAALDPEITAQIVSI  183 (242)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             88654899999999999


No 345
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of  the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of  the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD 
Probab=28.47  E-value=42  Score=14.27  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             30135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r  124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       124 ~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ..+.+.++.|+....+   +.++|.|+.++.+.+.+-.-....-...+..++..++++++++
T Consensus         7 ~s~~m~~~~GFLa~vF---~if~~~~vsVDlisTSEvsVS~tlD~~~~~~~~~~l~~l~~eL   65 (75)
T cd04912           7 KSNRMLGAHGFLAKVF---EIFAKHGLSVDLISTSEVSVSLTLDPTKNLSDQLLLDALVKDL   65 (75)
T ss_pred             ECCCHHHHCCHHHHHH---HHHHHCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             4564665632899999---9999829955899805518999984887532066799999999


No 346
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234    These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=28.35  E-value=13  Score=17.57  Aligned_cols=49  Identities=29%  Similarity=0.419  Sum_probs=27.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEC---CCCCCCCCCC
Q ss_conf             000111000130135345556530210245677742042255315---5211234666
Q gi|254780747|r  114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFS  168 (293)
Q Consensus       114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g---~~K~~~~p~~  168 (293)
                      +-.++||+++.. |++||.     ...+++.+.|.||++..+...   ++|.+..|-+
T Consensus        89 L~~AGDhvv~sR-SlFGst-----~~~~~~~l~rFGv~v~fv~~~Dl~~WeaA~~~nT  140 (386)
T TIGR01325        89 LLSAGDHVVASR-SLFGST-----VVLVSEILPRFGVEVSFVDATDLKAWEAALKPNT  140 (386)
T ss_pred             HHCCCCEEEEEE-CHHCCE-----EEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCC
T ss_conf             861687799851-000320-----0210125343540675178678788898569995


No 347
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=28.23  E-value=43  Score=14.24  Aligned_cols=39  Identities=15%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |++..+......++.+..+.|+.-.|-+.
T Consensus        43 ~p~~Ivl---SpGPg~P~~~~~~~~~i~~~~~~iPiLGIClG~   82 (187)
T PRK08007         43 KPQKIVI---SPGPCTPDEAGISLDVIRHYAGRLPILGVCLGH   82 (187)
T ss_pred             CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf             9897999---999999589084046899753899889987999


No 348
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=27.97  E-value=43  Score=14.22  Aligned_cols=25  Identities=16%  Similarity=0.109  Sum_probs=11.1

Q ss_pred             CCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf             980623-8989999999974187765
Q gi|254780747|r  222 GLIDVV-GGQEEVWQSLYALGVDQSI  246 (293)
Q Consensus       222 GLvD~i-g~~~~a~~~l~~~~~~~~~  246 (293)
                      ..+.++ |++.+-++-+..+...++.
T Consensus       130 ~~p~~LSGGe~QRVAIARAL~~~P~i  155 (206)
T TIGR03608       130 QKIYELSGGEQQRVALARAILKPSEL  155 (206)
T ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf             99244486999999999998249999


No 349
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.94  E-value=43  Score=14.21  Aligned_cols=18  Identities=28%  Similarity=0.339  Sum_probs=6.8

Q ss_pred             CCHHHHHHHHHHHCCCCC
Q ss_conf             898999999997418776
Q gi|254780747|r  228 GGQEEVWQSLYALGVDQS  245 (293)
Q Consensus       228 g~~~~a~~~l~~~~~~~~  245 (293)
                      |+..+-+.-+..+...++
T Consensus       137 GGqkQrv~iAral~~~P~  154 (211)
T cd03225         137 GGQKQRVAIAGVLAMDPD  154 (211)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             989999999999975999


No 350
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=27.92  E-value=43  Score=14.21  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf             69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL  128 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~  128 (293)
                      .++.+.-....+.+|++  ++|+=-+-|-++...+++.+.|+++++.+..+.++.+..    ..+...||+|+. ..+-+
T Consensus       139 ~~Qrv~ia~al~~~p~i--lilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~itH~l----~~v~~~~Drv~vm~~G~i  212 (491)
T PRK10982        139 QMQMIEIAKAFSYNAKI--VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM----EEIFQLCDEITILRDGQW  212 (491)
T ss_pred             HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCCCEEEECCCCEE
T ss_conf             99999999998539988--981587345587888999888888774285367862436----744215867897569749


No 351
>KOG1532 consensus
Probab=27.89  E-value=43  Score=14.21  Aligned_cols=52  Identities=25%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC----CHHHH-HHHHHHHHHHCCCCC-EEEEECCCCCC
Q ss_conf             9999999998618998799997588888----88999-999999998414786-79960332332
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGG----SAYAG-EAIFRAIQKVKNRKP-VITEVHEMAAS  109 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG----~~~~~-~~i~~ai~~~k~~kp-vva~~~~~~~S  109 (293)
                      +++++.|+++.+.  .+-  +-||+||-    .+.++ ..|.+.+   ++..| |++|+-+..-|
T Consensus       103 dqv~~~iek~~~~--~~~--~liDTPGQIE~FtWSAsGsIIte~l---ass~ptvv~YvvDt~rs  160 (366)
T KOG1532         103 DQVIELIEKRAEE--FDY--VLIDTPGQIEAFTWSASGSIITETL---ASSFPTVVVYVVDTPRS  160 (366)
T ss_pred             HHHHHHHHHHHCC--CCE--EEECCCCCEEEEEECCCCCCHHHHH---HHCCCEEEEEEECCCCC
T ss_conf             9999999974220--477--9974888068998427850158667---61398599999447767


No 352
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=27.71  E-value=22  Score=16.07  Aligned_cols=89  Identities=18%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             EEEEECC--CCCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf             9999758--88888899999999999841478-67996033233223210001110001301353455565302102456
Q gi|254780747|r   68 ALIVSLS--SPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF  144 (293)
Q Consensus        68 ~ivL~i~--SpGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~l  144 (293)
                      -|.|.-.  ++.|+----..|.+++-.-+-+| .+++  +.-+.+-|.-+|++|-..=+.=.-.+|..-+.-|.+|.-. 
T Consensus        76 kIylKrEdlnhtGsHKiNnalgQallAkrmGkkriia--ETGAGQhG~A~A~a~A~~Gl~c~VyMg~~D~~rQ~~NV~r-  152 (392)
T PRK04346         76 KIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIA--ETGAGQHGVATATAAALFGLECVVYMGAEDVERQALNVFR-  152 (392)
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE--CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH-
T ss_conf             6888632678776543010699999999808833540--4462066789999999809963899715655313523899-


Q ss_pred             HHHHHHCCEEEEECC
Q ss_conf             777420422553155
Q gi|254780747|r  145 LDKLGVSIKSVKSSP  159 (293)
Q Consensus       145 l~k~gi~~~~~~~g~  159 (293)
                      ++-+|-++..+.+|.
T Consensus       153 M~llGA~Vvpv~sGs  167 (392)
T PRK04346        153 MKLLGAEVVPVTSGS  167 (392)
T ss_pred             HHHCCCEEEEECCCC
T ss_conf             998698599827877


No 353
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=27.42  E-value=44  Score=14.15  Aligned_cols=151  Identities=13%  Similarity=0.127  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCCEEEEE-CCC
Q ss_conf             99999999841478679960332332232100011100013013534--555653021024567774204225531-552
Q gi|254780747|r   84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSIKSVKS-SPM  160 (293)
Q Consensus        84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~~~~~~-g~~  160 (293)
                      +.|.++|+.+|+++||+++=++---.-|.++ .+|+.+-......+-  .-|.++.. --.+..+++|+..-+-.. ..+
T Consensus        14 ~~Ie~Ai~al~~G~~Viv~Dd~dREnEgDlv-~aAe~~t~e~v~fm~~~~~GliCv~-~~~~~~~~L~Lp~m~~~n~~~~   91 (217)
T PRK03353         14 ERVEAALDALREGRGVLVLDDEDRENEGDMI-FAAETMTVEQMALTIRHGSGIVCLC-LTEERRKQLDLPMMVENNTSQY   91 (217)
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCCEEEC-CCHHHHHHCCCCCCCCCCCCCC
T ss_conf             1599999999879959998389987640689-7854399999999999579978835-9999998679967568776645


Q ss_pred             CC-------CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH
Q ss_conf             11-------234-6667899998877777666667789999851499988998873498237889987798062389899
Q gi|254780747|r  161 KA-------EPS-PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE  232 (293)
Q Consensus       161 K~-------~~~-p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~  232 (293)
                      ..       +.+ .++..|..+|...-..            ....+-.+++.  ..-|.+| .-.|.+-|+..+-| .-|
T Consensus        92 ~taFtvsvd~~~g~~TGISa~DRa~Tir~------------la~~~~~~~df--~~PGHVf-pL~a~~GGvl~R~G-HTE  155 (217)
T PRK03353         92 GTAFTVTIEAAEGVTTGVSAADRITTIRA------------AIADGAKPSDL--NRPGHVF-PLRAQPGGVLTRRG-HTE  155 (217)
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHH------------HHCCCCCHHHC--CCCCCCC-EEEECCCCCCCCCC-HHH
T ss_conf             78751555230588788798999998998------------73889985346--8998124-02143688353797-899


Q ss_pred             HHHHHHHHCCCCCCCCEEEC
Q ss_conf             99999974187765301201
Q gi|254780747|r  233 VWQSLYALGVDQSIRKIKDW  252 (293)
Q Consensus       233 a~~~l~~~~~~~~~~~~~~~  252 (293)
                      +--.|..+++....-.+-..
T Consensus       156 asvdLa~LAGl~PvavicEi  175 (217)
T PRK03353        156 ATIDLMTLAGLKPAGVLCEL  175 (217)
T ss_pred             HHHHHHHHCCCCCEEEEEEE
T ss_conf             99999998199965999999


No 354
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase.  These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=27.13  E-value=45  Score=14.12  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=27.8

Q ss_pred             CCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99879999758888-88899999999999841478679960332
Q gi|254780747|r   64 DSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        64 ~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      .+.+||+|.   || |++.........++.+++++|+...+-++
T Consensus        41 ~~~~giiLS---~GPg~p~~~~~~~~~~~~l~~~iPiLGIC~G~   81 (184)
T cd01743          41 LNPDAIVIS---PGPGHPEDAGISLEIIRALAGKVPILGVCLGH   81 (184)
T ss_pred             CCCCEEEEC---CCCCCHHHCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf             297999999---99989256146099999984699899980999


No 355
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=26.79  E-value=45  Score=14.08  Aligned_cols=50  Identities=24%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHCCCC-----CCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999999999861899-----879999758888--8889999999999984147867996
Q gi|254780747|r   51 QELIERIERISRDDS-----ATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITE  102 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~-----ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~  102 (293)
                      +.+...|++|.++.+     |.+|-.- ..||  |+..-.-..+++|. +.-+||.+..
T Consensus        52 e~i~~li~~al~eA~~~~~dID~IA~T-~gPGL~gaL~VG~~~Ak~LA-~a~~kPli~V  108 (342)
T COG0533          52 ENIPPLIEEALAEAGVSLEDIDAIAVT-AGPGLGGALLVGATAAKALA-LALNKPLIPV  108 (342)
T ss_pred             HHHHHHHHHHHHHCCCCHHCCCEEEEE-CCCCCHHHHHHHHHHHHHHH-HHHCCCEEEC
T ss_conf             989999999999849983018889981-69994477899999999999-9829997231


No 356
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=26.57  E-value=46  Score=14.06  Aligned_cols=17  Identities=24%  Similarity=0.247  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHCCCCCEEE
Q ss_conf             999999998414786799
Q gi|254780747|r   84 EAIFRAIQKVKNRKPVIT  101 (293)
Q Consensus        84 ~~i~~ai~~~k~~kpvva  101 (293)
                      -..+++|.. .-+||++.
T Consensus        90 ~~~Ak~La~-~~~~Plig  106 (536)
T PRK09605         90 ATAARALAL-SLDVPLIG  106 (536)
T ss_pred             HHHHHHHHH-HHCCCEEE
T ss_conf             999999999-84998500


No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity.  In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.  Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family.  The ATP-binding domain shows the highest similarity between all members of the ABC transporter family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.27  E-value=46  Score=14.02  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=13.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             23466678999988777776666
Q gi|254780747|r  163 EPSPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       163 ~~~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      .-||+..+.+..++.+.+++.++
T Consensus       119 LDEPt~gLD~~~~~~i~~~i~~l  141 (173)
T cd03230         119 LDEPTSGLDPESRREFWELLREL  141 (173)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             90886579999999999999999


No 358
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.15  E-value=47  Score=14.01  Aligned_cols=39  Identities=18%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9879999758888-88899999999999841478679960332
Q gi|254780747|r   65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM  106 (293)
Q Consensus        65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~  106 (293)
                      +.++|+|   ||| |++.........++.+..+.|+.-.|-+.
T Consensus        43 ~p~~Iil---S~GPg~p~~~~~~~~~~~~~~~~iPILGIClG~   82 (192)
T PRK08857         43 NPSHLVI---SPGPCTPNEAGISLQAIEHFAGKLPILGVCLGH   82 (192)
T ss_pred             CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf             9795999---899999678286146699735799989987999


No 359
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide.  CobB belongs to the triad family of amidotransferases.  Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=25.89  E-value=47  Score=13.98  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHH------------CCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf             99999999986------------1899879999758888888-------99999999999841-4786799603323
Q gi|254780747|r   51 QELIERIERIS------------RDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVK-NRKPVITEVHEMA  107 (293)
Q Consensus        51 ~~l~~~l~~a~------------~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k-~~kpvva~~~~~~  107 (293)
                      ++-++.|+++.            .-|.+.+|+|    |||-+       ++...+.+.|+++. +++||++=++++.
T Consensus        14 ~enl~~L~~~Gaelv~FSPl~d~~lP~~d~lyl----gGGyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECGGlM   86 (198)
T cd03130          14 PENLELLEAAGAELVPFSPLKDEELPDADGLYL----GGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLM   86 (198)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             999999998899789877767888998768982----7998758899997679999999999984997799820488


No 360
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=25.86  E-value=47  Score=13.98  Aligned_cols=94  Identities=12%  Similarity=0.160  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC-------------
Q ss_conf             99999999986189987999975--8888888999999999998414-7867996033233223210-------------
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI-------------  114 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i-------------  114 (293)
                      +.+-+.|+.-. -++|.-|++.+  ||.||.+...+.|++.=+-.++ +.|++--..-.+ --+|+|             
T Consensus       164 ~kLe~~i~~~g-~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~gipl~lDaaRfa-ENAyFIk~RE~gy~~~si~  241 (459)
T PRK13237        164 DKLQKLIDEVG-AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCV-ENAYFIKEREEGYQDKSIK  241 (459)
T ss_pred             HHHHHHHHHHC-CCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH-HHHHHHHHCCCCCCCCCHH
T ss_conf             99999998748-556008999985268788064689999999999980996998766788-7689998344201489999


Q ss_pred             ------CCCCCCCCCCH--HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             ------00111000130--13534555653021024567774
Q gi|254780747|r  115 ------SCASNIIVAAE--TSLVGSIGVLFQYPYVKPFLDKL  148 (293)
Q Consensus       115 ------As~ad~I~a~p--~s~vGsiGv~~~~~~~~~ll~k~  148 (293)
                            .+.||-++|+-  .+++.-=|+++.  +-++++++.
T Consensus       242 eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~--~d~~l~~~~  281 (459)
T PRK13237        242 EILKEMFSYADGATMSGKKDCLVNIGGFLAM--NDDELFQEA  281 (459)
T ss_pred             HHHHHHHHHHHEEEEEECCCCCCCCCCEEEE--CCHHHHHHH
T ss_conf             9999997440279998320253465567985--779999999


No 361
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=25.68  E-value=30  Score=15.19  Aligned_cols=74  Identities=27%  Similarity=0.436  Sum_probs=48.0

Q ss_pred             HHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC---CCCCCCCCCCHHHHH
Q ss_conf             9999998618998799997-588888889999999999984147867996033233223210---001110001301353
Q gi|254780747|r   54 IERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI---SCASNIIVAAETSLV  129 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i---As~ad~I~a~p~s~v  129 (293)
                      .+.++++- |++-|+|++. |..|++.+.-.+.|.+.-+  +.+-|.+  +++.+++. |++   --.||-++-+-+-.+
T Consensus       137 ~~~~~~aI-~~nTkavf~EtigNP~~~v~Die~ia~iAh--~~gvpli--VDNT~atp-yl~rP~~hGADIVvHS~TK~i  210 (426)
T COG2873         137 PENFEAAI-DENTKAVFAETIGNPGLDVLDIEAIAEIAH--RHGVPLI--VDNTFATP-YLCRPIEHGADIVVHSATKYI  210 (426)
T ss_pred             HHHHHHHH-CCCCCEEEEEECCCCCCCCCCHHHHHHHHH--HCCCCEE--EECCCCCC-EECCHHHCCCCEEEEEECCCC
T ss_conf             89999873-822406878751688766357799999998--7599389--83677730-043665618877998603012


Q ss_pred             HHHH
Q ss_conf             4555
Q gi|254780747|r  130 GSIG  133 (293)
Q Consensus       130 GsiG  133 (293)
                      |--|
T Consensus       211 gGhG  214 (426)
T COG2873         211 GGHG  214 (426)
T ss_pred             CCCC
T ss_conf             6776


No 362
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.65  E-value=48  Score=13.95  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9758888888999999999998414--78679960332332232100011100013013534555653021024567774
Q gi|254780747|r   71 VSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL  148 (293)
Q Consensus        71 L~i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~  148 (293)
                      |-+=+.|++   +.-+.+++++..+  +.++.+....  .+..+-+.---|-+...|.       |......++..-|++
T Consensus         4 Ll~Ca~GmS---Ss~la~~m~k~A~~~gi~~~i~A~~--~~~~~d~~~~yDvilLaPQ-------v~~~~~~lk~~ad~~   71 (99)
T cd05565           4 LVLCAGGGT---SGLLANALNKGAKERGVPLEAAAGA--YGSHYDMIPDYDLVILAPQ-------MASYYDELKKDTDRL   71 (99)
T ss_pred             EEEECCCCC---HHHHHHHHHHHHHHCCCCEEEEEEE--CHHHHHHHHCCCEEEECHH-------HHHHHHHHHHHHHHC
T ss_conf             999079885---8999999999999819976999510--3448988707999999850-------888899999999983


Q ss_pred             HHCCEEEEECCCC
Q ss_conf             2042255315521
Q gi|254780747|r  149 GVSIKSVKSSPMK  161 (293)
Q Consensus       149 gi~~~~~~~g~~K  161 (293)
                      |++...+.--+|-
T Consensus        72 Gi~v~~i~~~~Yi   84 (99)
T cd05565          72 GIKLVTTTGKQYI   84 (99)
T ss_pred             CCEEEEECHHHEE
T ss_conf             9918870834522


No 363
>PRK09051 beta-ketothiolase; Provisional
Probab=25.61  E-value=46  Score=14.04  Aligned_cols=157  Identities=15%  Similarity=0.151  Sum_probs=70.9

Q ss_pred             HHHHHHHCC-CCCCEEEEE-CCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999998618-998799997-5888888899999999999---84147867996033233223210001110001301353
Q gi|254780747|r   55 ERIERISRD-DSATALIVS-LSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV  129 (293)
Q Consensus        55 ~~l~~a~~d-~~ik~ivL~-i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v  129 (293)
                      ..|++..-| +.|..|++= +...|+...   .+.+...   .+....|-++ ++..|+||---|..+++.|-+....++
T Consensus        37 ~~l~r~~i~p~~Id~Vi~G~v~~~g~~~~---niaR~aal~aGlp~~vp~~t-Vnr~C~SGl~Ai~~Aa~~I~~G~~d~v  112 (394)
T PRK09051         37 EALARAGVDGDQVGHVVFGHVIPTEPRDM---YLSRVAAINAGVPQETPALN-VNRLCGSGLQAIVSAAQAILLGDADVA  112 (394)
T ss_pred             HHHHHCCCCHHHCCEEEEEECCCCCCCCC---CHHHHHHHHCCCCCCCCCEE-EHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99987198989989799992355676676---78999999769998887188-715547789999999999976998877


Q ss_pred             HHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             455565--302102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r  130 GSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL  207 (293)
Q Consensus       130 GsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~  207 (293)
                      =.-|+-  .+.|+...- .+.|     .+.|+.+........+++.       +-+......-+.+++..++++++.+++
T Consensus       113 iAGGvEsmS~~P~~~~~-~r~g-----~~~g~~~~~d~~~~~l~d~-------~~~~~Mg~tAE~~A~~~~IsRe~qD~~  179 (394)
T PRK09051        113 IGGGAESMSRAPYLLPA-ARWG-----ARMGDAKLVDMMVGALHDP-------FGTIHMGVTAENVAAKYGISREAQDAL  179 (394)
T ss_pred             EEECCHHCCCCCCCCCC-CCCC-----CCCCCCCCHHHHCCCCCCC-------CCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             87241020358534753-3224-----3457662101002434475-------668768888998999859899999999


Q ss_pred             HCCCCCCHHHHHHCCCCC-CCC
Q ss_conf             349823788998779806-238
Q gi|254780747|r  208 SDGRIWTGAEAKKVGLID-VVG  228 (293)
Q Consensus       208 ~~g~~~~~~~A~~~GLvD-~ig  228 (293)
                      +-...-.+.+|.+.|.-+ +|.
T Consensus       180 A~~Sh~rA~~A~~~G~f~~EIv  201 (394)
T PRK09051        180 ALESHRRAARAIAAGYFKDQIV  201 (394)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEE
T ss_conf             9998999999987598620163


No 364
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113   This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.   In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=25.27  E-value=48  Score=13.91  Aligned_cols=84  Identities=18%  Similarity=0.341  Sum_probs=47.7

Q ss_pred             EEEEEEECCH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCC
Q ss_conf             9976662386---9999999998618998799997588888889999999999984--1478679960332332232100
Q gi|254780747|r   41 IAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLIS  115 (293)
Q Consensus        41 i~i~G~I~~~---~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~--k~~kpvva~~~~~~~S~~Y~iA  115 (293)
                      ...++.|.++   +++++.+++.++-++.  |+|+=.|    -++=|-|+++|.+.  |++||.|=+ +.-|.|-+ +| 
T Consensus       209 ~~~~~i~G~Spam~~v~~~~~~vA~~nST--VLlRGES----GTGKEl~A~AIH~~SpR~~~PFVK~-NCAALse~-lL-  279 (574)
T TIGR01817       209 GKEDGIVGKSPAMRQVVDQIKVVARSNST--VLLRGES----GTGKELIAKAIHELSPRAKRPFVKL-NCAALSET-LL-  279 (574)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCE--EEEECCC----CCCHHHHHHHHCCCCCCCCCCCEEE-ECCCCCCC-HH-
T ss_conf             34474012478999999886520131766--7850565----7443344423404664557885450-06447761-12-


Q ss_pred             CCCCCCCCC-HHHHHHHHHHH
Q ss_conf             011100013-01353455565
Q gi|254780747|r  116 CASNIIVAA-ETSLVGSIGVL  135 (293)
Q Consensus       116 s~ad~I~a~-p~s~vGsiGv~  135 (293)
                        =.|.|-| .++.+|-|.-+
T Consensus       280 --ESELFGHEKGAFTGA~~~R  298 (574)
T TIGR01817       280 --ESELFGHEKGAFTGAVAQR  298 (574)
T ss_pred             --HHHHHCCCCHHHHHHHHHC
T ss_conf             --4545134301468887517


No 365
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.76  E-value=49  Score=13.85  Aligned_cols=83  Identities=11%  Similarity=0.125  Sum_probs=45.4

Q ss_pred             CCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCC-CCCCCCC--CHHHHHHHHHH
Q ss_conf             18998799997588---8888899999999999841478-6799603323322321000-1110001--30135345556
Q gi|254780747|r   62 RDDSATALIVSLSS---PGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISC-ASNIIVA--AETSLVGSIGV  134 (293)
Q Consensus        62 ~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs-~ad~I~a--~p~s~vGsiGv  134 (293)
                      +..+++||++++|.   |=-...++.++.+-+.++|..+ +++++-+....--+++... .-+.|+.  -|.+       
T Consensus        24 ~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~-------   96 (175)
T COG2179          24 KAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFG-------   96 (175)
T ss_pred             HHCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCH-------
T ss_conf             9759818998166751104699899999999999986597799981897888876665259723402259627-------


Q ss_pred             HHCCCHHHHHHHHHHHCCEEE
Q ss_conf             530210245677742042255
Q gi|254780747|r  135 LFQYPYVKPFLDKLGVSIKSV  155 (293)
Q Consensus       135 ~~~~~~~~~ll~k~gi~~~~~  155 (293)
                          ..|...+.++++..+..
T Consensus        97 ----~~fr~Al~~m~l~~~~v  113 (175)
T COG2179          97 ----RAFRRALKEMNLPPEEV  113 (175)
T ss_pred             ----HHHHHHHHHCCCCHHHE
T ss_conf             ----99999999809983687


No 366
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain.  This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator.  ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal.  AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=24.68  E-value=48  Score=13.95  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=23.6

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             9987999975888888899999999999841478679960332332232100011
Q gi|254780747|r   64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS  118 (293)
Q Consensus        64 ~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a  118 (293)
                      +....+++ ....+.......++.+.|++..+....++.    .++|.+++|.++
T Consensus        63 ~~~D~liV-~Gg~~~~~~~~~~~~~~L~~~~~~g~~v~s----vctGa~~LA~aG  112 (185)
T cd03136          63 PPLDYLFV-VGGLGARRAVTPALLAWLRRAARRGVALGG----IDTGAFLLARAG  112 (185)
T ss_pred             CCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEE----ECHHHHHHHHCC
T ss_conf             76789998-788880214799999999999870998998----647999999818


No 367
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=24.64  E-value=50  Score=13.83  Aligned_cols=10  Identities=40%  Similarity=0.826  Sum_probs=3.1

Q ss_pred             CCCCCCHHHH
Q ss_conf             6667899998
Q gi|254780747|r  166 PFSEVNPKAV  175 (293)
Q Consensus       166 p~~~~s~e~~  175 (293)
                      |+..+.+..+
T Consensus       156 Pts~LD~~~~  165 (233)
T PRK10771        156 PFSALDPALR  165 (233)
T ss_pred             CCCCCCHHHH
T ss_conf             7755799999


No 368
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.42  E-value=50  Score=13.81  Aligned_cols=41  Identities=5%  Similarity=0.140  Sum_probs=22.0

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCC-CCCCHHH------HHHHHHHHHHH
Q ss_conf             99999998618998799997588-8888899------99999999984
Q gi|254780747|r   53 LIERIERISRDDSATALIVSLSS-PGGSAYA------GEAIFRAIQKV   93 (293)
Q Consensus        53 l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~------~~~i~~ai~~~   93 (293)
                      .+.-.+.+++.-+|.-+++++-. +.+.++.      ..++.++|+.+
T Consensus       124 ~~KWye~~are~~IPlf~iDip~~~~~e~~~~~i~Yv~~Q~~d~I~~L  171 (430)
T TIGR03191       124 HAKWYQHVAKEEKIPDFYLDVGVGAYKDLTDARLDYVANQLHDGIEFV  171 (430)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             899999999971999699826878888779899999999999999999


No 369
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.31  E-value=50  Score=13.80  Aligned_cols=104  Identities=15%  Similarity=0.096  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCC-----CCCCCCCC
Q ss_conf             869999999998618998799997588888---88999999999998-4147867996033233223-----21000111
Q gi|254780747|r   49 DSQELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAG-----YLISCASN  119 (293)
Q Consensus        49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG---~~~~~~~i~~ai~~-~k~~kpvva~~~~~~~S~~-----Y~iAs~ad  119 (293)
                      +.+.+.+.++... +..+.||++-=.+.-+   +...-.++.+...+ .+.+.||++-++. ...-.     +.-...+|
T Consensus        24 D~~~~~~~i~~l~-~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg~-~t~~ai~la~~a~~~Gad  101 (296)
T TIGR03249        24 DEAAYRENIEWLL-GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGAD  101 (296)
T ss_pred             CHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999-77999899783051666589999999999999983898415127861-299999999999875999


Q ss_pred             CCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEE
Q ss_conf             0001-301353455565302102456777420422553
Q gi|254780747|r  120 IIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK  156 (293)
Q Consensus       120 ~I~a-~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~  156 (293)
                      -+.. +|.-.-++-  -...-+|+.+.+..++.+-.+.
T Consensus       102 ~v~v~pPyy~~~~~--~~l~~~f~~ia~a~~~pi~lYn  137 (296)
T TIGR03249       102 GYLLLPPYLINGEQ--EGLYAHVEAVCESTDLGVIVYQ  137 (296)
T ss_pred             EEEECCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEC
T ss_conf             78977998899999--9999999999971599778730


No 370
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=23.83  E-value=51  Score=13.74  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CC-CCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             88-888999999999998414-78679960332332232100011100013-0135345556530210245677742042
Q gi|254780747|r   76 PG-GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSI  152 (293)
Q Consensus        76 pG-G~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~-p~s~vGsiGv~~~~~~~~~ll~k~gi~~  152 (293)
                      |. |-+.+..-.+|.+.|++. ++--+.|+.+.=.= |.-|.+.|..-=.+ |-.++..     .+..++++++.++|.+
T Consensus        14 pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEH-G~kI~~~A~~~g~tqP~~~vd~-----~~~~f~~~~~~lnI~f   87 (573)
T TIGR00398        14 PHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEH-GTKIELKAEQEGLTQPKELVDK-----YHEEFKKLWKWLNISF   87 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHCCCC
T ss_conf             121036677789999999985289747898513446-8788886987089964899999-----9999999998728456


Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             255315521123466678999988777776666677
Q gi|254780747|r  153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW  188 (293)
Q Consensus       153 ~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~  188 (293)
                      +.|.           |-.++++++..|..-..+++.
T Consensus        88 D~F~-----------RTTd~~H~~~v~~~f~~L~~n  112 (573)
T TIGR00398        88 DRFI-----------RTTDEEHKEIVQKIFQKLLEN  112 (573)
T ss_pred             CCCC-----------CCCCHHHHHHHHHHHHHHHHC
T ss_conf             7654-----------676888899999999998753


No 371
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.79  E-value=52  Score=13.73  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=9.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..++..+
T Consensus       159 EPtsgLD~~~~~~i~~ll~~L  179 (257)
T PRK11247        159 EPLGALDALTRIEMQDLIESL  179 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             987657999999999999999


No 372
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=23.74  E-value=52  Score=13.73  Aligned_cols=17  Identities=18%  Similarity=0.352  Sum_probs=7.6

Q ss_pred             CCCCEEEEECCCCCCCH
Q ss_conf             99879999758888888
Q gi|254780747|r   64 DSATALIVSLSSPGGSA   80 (293)
Q Consensus        64 ~~ik~ivL~i~SpGG~~   80 (293)
                      |+|+|.+..---|-|..
T Consensus         5 Pkirgfic~taHP~GC~   21 (400)
T PRK13656          5 PKVRGFICTTAHPVGCE   21 (400)
T ss_pred             CCCCCEEECCCCCHHHH
T ss_conf             53343356688968899


No 373
>PRK01060 endonuclease IV; Provisional
Probab=23.69  E-value=52  Score=13.72  Aligned_cols=59  Identities=20%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCC--CH-HHHHHHHHHHHHH-CCCCCEEEEECCCCCCC
Q ss_conf             9999999998618998799997588888--88-9999999999984-14786799603323322
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGG--SA-YAGEAIFRAIQKV-KNRKPVITEVHEMAASA  110 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG--~~-~~~~~i~~ai~~~-k~~kpvva~~~~~~~S~  110 (293)
                      +.+.+.|+.+.. =.+++++++..|.-|  .- .+.+.+.+.|++. ...+.+....+..|.+|
T Consensus        89 ~~l~~el~r~~~-lG~~~vV~HpGs~~g~~~~~~gi~~i~~~l~~~l~~~~~~~ilLEn~AGqG  151 (281)
T PRK01060         89 DALIDEIERCEA-LGAKLLNFHPGSHLGAIDEADCLDRIAESLNEALDKTQGVTIVLENTAGQG  151 (281)
T ss_pred             HHHHHHHHHHHH-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             999999999998-099859845763368887999999999999999815898679997248999


No 374
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=23.69  E-value=52  Score=13.72  Aligned_cols=18  Identities=28%  Similarity=0.357  Sum_probs=6.2

Q ss_pred             CCHHHHHHHHHHHCCCCC
Q ss_conf             898999999997418776
Q gi|254780747|r  228 GGQEEVWQSLYALGVDQS  245 (293)
Q Consensus       228 g~~~~a~~~l~~~~~~~~  245 (293)
                      |+..+-+.-+..+...++
T Consensus       148 GGq~QRv~iAraL~~~P~  165 (228)
T cd03257         148 GGQRQRVAIARALALNPK  165 (228)
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             889999998211047999


No 375
>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=23.68  E-value=41  Score=14.33  Aligned_cols=74  Identities=12%  Similarity=0.165  Sum_probs=39.5

Q ss_pred             HHHHH-HHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             34555-65302102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r  129 VGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL  207 (293)
Q Consensus       129 vGsiG-v~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~  207 (293)
                      +|+++ +..-.|.+.+..+....+...-+...++..   ...||+++|+.- .+++.   .=+..||++-|.+.++++++
T Consensus        17 mG~l~~i~~miPG~~~~~~~~~~~~~~~~lk~~~~I---i~SMT~~Er~~P-~ll~~---SR~~RIA~GSG~~~~eVn~L   89 (100)
T pfam02978        17 MGPLSKLLSMIPGMGKLPKLAEQELDEKKLKRIEAI---IDSMTPKERDNP-EIING---SRKRRIAKGSGTSVQEVNKL   89 (100)
T ss_pred             CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHCC-CCCCH---HHHHHHHHCCCCCHHHHHHH
T ss_conf             378999997787854024566530158999999999---983799988682-41386---79999980069999999999


Q ss_pred             HC
Q ss_conf             34
Q gi|254780747|r  208 SD  209 (293)
Q Consensus       208 ~~  209 (293)
                      ..
T Consensus        90 lk   91 (100)
T pfam02978        90 LK   91 (100)
T ss_pred             HH
T ss_conf             99


No 376
>pfam06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N). This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with pfam01676 (located in the C-terminal region of the protein).
Probab=23.56  E-value=52  Score=13.70  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             EEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCC-E--EEEECCC
Q ss_conf             662386999999999861899879999758888888999999999998414-786-7--9960332
Q gi|254780747|r   45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKP-V--ITEVHEM  106 (293)
Q Consensus        45 G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kp-v--va~~~~~  106 (293)
                      |.+...+.+.+.++++.+.. -+.-++=+=|+||.-...+-+...++-.++ +.| |  .++.++.
T Consensus         8 g~~~~n~~l~~~~~~~k~~~-~~lHL~GL~SdGGVHShidHl~al~~~a~~~gv~~v~lH~f~DGR   72 (223)
T pfam06415         8 GEFFSNPALLAAIDHVKKNN-GALHLIGLLSDGGVHSHIDHLFALLKLAKERGVKKVYIHAFTDGR   72 (223)
T ss_pred             CCCCCCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf             98324999999999999739-859999941499763247999999999997188708999860688


No 377
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316   These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=23.52  E-value=52  Score=13.70  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CC-CCCEEEEECCCCCCCCCCCCCCCC------CCCC
Q ss_conf             9999998618998799997588888889999999999984---14-786799603323322321000111------0001
Q gi|254780747|r   54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KN-RKPVITEVHEMAASAGYLISCASN------IIVA  123 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~---k~-~kpvva~~~~~~~S~~Y~iAs~ad------~I~a  123 (293)
                      .+.|++.-.-+.---|++.-.+  -++++|+.|..||.+.   |. +-+-++ .++-|.+.|.-++.||-      +|||
T Consensus        75 A~~LEe~Lgt~gr~rIyyK~E~--~~~tGSHK~NTA~AqAYYak~~G~k~l~-TETGAGQWG~AlS~A~al~~L~~~VfM  151 (426)
T TIGR01415        75 AKGLEELLGTPGRARIYYKYES--VSPTGSHKINTAIAQAYYAKKEGAKRLV-TETGAGQWGSALSLAGALFGLKVKVFM  151 (426)
T ss_pred             HHHHHHHHCCCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             5444786289952789874057--5778885244799999987554843743-236886478999999987289258988


Q ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             3013534555653021024567774204225531552112346667899998877777
Q gi|254780747|r  124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV  181 (293)
Q Consensus       124 ~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~  181 (293)
                      -..|.       -+.++-|-+|+-+|=++          ..|| ++.|+.-|+.+++.
T Consensus       152 vr~Sf-------~~KP~Rk~lM~~yGa~V----------~PSP-S~~T~~GR~~L~e~  191 (426)
T TIGR01415       152 VRVSF-------QQKPYRKYLMELYGAEV----------IPSP-SELTEFGRKVLKED  191 (426)
T ss_pred             EECCH-------HCCHHHHHHHHHCCCEE----------CCCC-CCCCHHHHHHHHCC
T ss_conf             74121-------04846899998708843----------3688-77513468887406


No 378
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=23.40  E-value=52  Score=13.69  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCC----CCCCHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             245677742042255315521123466----6789999-88777776666677899998
Q gi|254780747|r  141 VKPFLDKLGVSIKSVKSSPMKAEPSPF----SEVNPKA-VQMMQDVVDSSYHWFVRLVS  194 (293)
Q Consensus       141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~----~~~s~e~-~~~~~~~l~~~~~~f~~~Va  194 (293)
                      -.++++++|.+.--+.--  ..  -|+    .+.|.++ .+.+++-|-+-+.+|++.+.
T Consensus       338 p~~~l~~yg~D~lRY~l~--~~--~p~~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~  392 (666)
T PRK00133        338 ARTYLDHLDPDYLRYYLA--AK--LPSRIDDIDFNWEDFQQRVNSDLVGKLVNFASRAA  392 (666)
T ss_pred             HHHHHHHCCCCCEEHHHH--HC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799998669645302033--10--78987677869999999986888876668999999


No 379
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=23.29  E-value=53  Score=13.67  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=12.7

Q ss_pred             HHHCCCCCCC--CCHHHHHHHHHHHCC
Q ss_conf             9877980623--898999999997418
Q gi|254780747|r  218 AKKVGLIDVV--GGQEEVWQSLYALGV  242 (293)
Q Consensus       218 A~~~GLvD~i--g~~~~a~~~l~~~~~  242 (293)
                      =++.-++|++  -+.+||...+..++.
T Consensus       239 iLd~~~~D~v~~V~~edA~~~ARrLA~  265 (315)
T TIGR01136       239 ILDRSLIDEVITVSDEDAIETARRLAR  265 (315)
T ss_pred             CCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             137113310464182899999999987


No 380
>pfam09558 DUF2375 Protein of unknown function (DUF2375). Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by PEP_anchor (IPR013424).
Probab=23.20  E-value=43  Score=14.22  Aligned_cols=30  Identities=10%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9841478679960332332232100011100013
Q gi|254780747|r   91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAA  124 (293)
Q Consensus        91 ~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~  124 (293)
                      ++||.+|-++|.+++-|    -.+-|-+|++|.+
T Consensus        41 qeFrrGKsIIAV~EGe~----~IlNslGerv~sq   70 (71)
T pfam09558        41 QEFRRGKSIIAVLEGEC----KILNSLGERVYSQ   70 (71)
T ss_pred             HHHCCCCEEEEEEECCC----HHHHHHHHHHHHC
T ss_conf             58718975999971540----1366676777543


No 381
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds.  Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders.  The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle.  The ABCA genes are not present in yeast.  However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=23.16  E-value=53  Score=13.66  Aligned_cols=10  Identities=30%  Similarity=0.571  Sum_probs=3.1

Q ss_pred             CCCCCCHHHH
Q ss_conf             6667899998
Q gi|254780747|r  166 PFSEVNPKAV  175 (293)
Q Consensus       166 p~~~~s~e~~  175 (293)
                      |+..+.+..+
T Consensus       160 Pt~gLD~~~~  169 (220)
T cd03263         160 PTSGLDPASR  169 (220)
T ss_pred             CCCCCCHHHH
T ss_conf             8768899999


No 382
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=22.91  E-value=54  Score=13.63  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             HHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             9999998618998799997-588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r   54 IERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL  128 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~  128 (293)
                      ++.+.+- .++.|..|++= +-.+|+.      +.+... +.++    -|-++ ++..|+||---+..++..|-+....+
T Consensus        33 i~~l~~~-~~~~Id~vi~G~v~~~g~n------~aR~aa-L~aGlp~~vp~~t-Vnr~C~SGl~Av~~aa~~I~~G~~dv  103 (361)
T PRK06690         33 LTFLSKG-MERAIDDVILGNVVGPGGN------VARLSA-LEAGLGLHIPGVT-IDRQCGAGLEAIRTACHFIQGGAGKC  103 (361)
T ss_pred             HHHHHHC-CCCCCCEEEEEECCCCCCH------HHHHHH-HHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             9999727-9111685999956776750------999999-9759998887588-87531588999999999996799998


Q ss_pred             HHHHHHHH--CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             34555653--0210245677742042255315521123466678999988777776666677899998514999889988
Q gi|254780747|r  129 VGSIGVLF--QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV  206 (293)
Q Consensus       129 vGsiGv~~--~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~  206 (293)
                      +-.-|+-.  ..|+..                  +....|. .+.           |.....-.+.+++..++++++.++
T Consensus       104 viAGGvEsmS~~P~~~------------------~~~~~~~-~~~-----------d~~MG~tAE~vA~~~~isRe~qDe  153 (361)
T PRK06690        104 YIAGGVESTSTSPFQN------------------RARFSPE-TIG-----------DPDMGVAAEYVAERYNITREMQDE  153 (361)
T ss_pred             EEECCCCHHCCCCCCC------------------CCCCCCC-CCC-----------CCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf             9984701401252114------------------5677854-347-----------965899999999984979999999


Q ss_pred             HHCCCCCCHHHHHHCCCCC-CCCCH
Q ss_conf             7349823788998779806-23898
Q gi|254780747|r  207 LSDGRIWTGAEAKKVGLID-VVGGQ  230 (293)
Q Consensus       207 ~~~g~~~~~~~A~~~GLvD-~ig~~  230 (293)
                      ++--..--+.+|.+.|.-+ +|-..
T Consensus       154 ~A~~Sh~rA~~A~~~G~f~~EIvPv  178 (361)
T PRK06690        154 YACLSYKRTLQALEKGYIHEEILSF  178 (361)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999899999998749852113766


No 383
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=22.88  E-value=54  Score=13.62  Aligned_cols=66  Identities=9%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999998618998799997588888889999999999984147867996033233223210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a  123 (293)
                      ++.+.--+....++.+  ++|+=-+.+-++.....+.+.|++++.+++.+..+.+.- +   .+ ..||+|+.
T Consensus       102 kQRvalARal~~~p~i--lilDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~-~---~~-~~aD~Iiv  167 (173)
T cd03246         102 RQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-E---TL-ASADRILV  167 (173)
T ss_pred             HHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-H---HH-HHCCEEEE
T ss_conf             9999999998279999--999687668998999999999997864898999984799-9---99-84999999


No 384
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.55  E-value=55  Score=13.58  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             HCCEEEEECCCCCCCCCC--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             042255315521123466--67-89999887777766666778999985149
Q gi|254780747|r  150 VSIKSVKSSPMKAEPSPF--SE-VNPKAVQMMQDVVDSSYHWFVRLVSESRN  198 (293)
Q Consensus       150 i~~~~~~~g~~K~~~~p~--~~-~s~e~~~~~~~~l~~~~~~f~~~Va~~R~  198 (293)
                      |-+-.++.|+.--+.|.-  .| ++..-|+.++.++. -|+.|++...+-|.
T Consensus       124 i~Paiv~Rg~L~IAIST~G~SP~lAr~iR~klE~~~p-ey~~~~~~~g~~R~  174 (222)
T PRK05562        124 VIPYQRSSKNMVFALNTKGGSPKTSVFIGEKVKNFLK-KYDDFIEYVTKIRN  174 (222)
T ss_pred             EECEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             9770997289799998999897999999999999878-89999999999999


No 385
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient.  The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes.  The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system.  PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein.  PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=22.24  E-value=55  Score=13.54  Aligned_cols=10  Identities=20%  Similarity=-0.007  Sum_probs=3.1

Q ss_pred             HHHHHHCCCC
Q ss_conf             9999741877
Q gi|254780747|r  235 QSLYALGVDQ  244 (293)
Q Consensus       235 ~~l~~~~~~~  244 (293)
                      .-+..+...+
T Consensus       151 aIArAL~~~P  160 (227)
T cd03260         151 CLARALANEP  160 (227)
T ss_pred             HHHHHHHCCC
T ss_conf             9999983599


No 386
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.05  E-value=41  Score=14.35  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=6.2

Q ss_pred             EEEEECCHHHHHHHHH
Q ss_conf             7666238699999999
Q gi|254780747|r   43 IRGQIEDSQELIERIE   58 (293)
Q Consensus        43 i~G~I~~~~~l~~~l~   58 (293)
                      ..|...+.+.+.+.|+
T Consensus        48 ~sG~~aD~~~l~~~l~   63 (195)
T cd03759          48 LAGLATDVQTLAQKLR   63 (195)
T ss_pred             EEECHHHHHHHHHHHH
T ss_conf             0684899999999999


No 387
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.84  E-value=56  Score=13.49  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             6999999999861899879999758888888999999999998414-786799603323322321000111000130
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE  125 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p  125 (293)
                      +++-+.-.+....++++  ++|+=-+.|-++....++.+.|++++. .+..+.++.+.-    ..+...||+|+.-.
T Consensus        76 qrQRv~iAral~~~p~l--llLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl----~~a~~~aDrI~vl~  146 (177)
T cd03222          76 ELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL----AVLDYLSDRIHVFE  146 (177)
T ss_pred             HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHHCCEEEEEE
T ss_conf             99999999998239999--9974886538999999999999999996597799985889----99998699999993


No 388
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.82  E-value=56  Score=13.49  Aligned_cols=19  Identities=21%  Similarity=0.363  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHC-CCCCCE
Q ss_conf             6999999999861-899879
Q gi|254780747|r   50 SQELIERIERISR-DDSATA   68 (293)
Q Consensus        50 ~~~l~~~l~~a~~-d~~ik~   68 (293)
                      -.++++.|.-... |+...+
T Consensus        43 KSTLlk~i~Gll~~d~~~~g   62 (262)
T PRK09984         43 KSTLLRHLSGLITGDKSAGS   62 (262)
T ss_pred             HHHHHHHHHCCCCCCCCCCE
T ss_conf             99999999756777989841


No 389
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=21.72  E-value=57  Score=13.48  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             EEEECCHH---HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCCCCC
Q ss_conf             66623869---999999998618998799997588888889999999999984147867996033--2332232100011
Q gi|254780747|r   44 RGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE--MAASAGYLISCAS  118 (293)
Q Consensus        44 ~G~I~~~~---~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~--~~~S~~Y~iAs~a  118 (293)
                      .|.+...+   ++++.+.++.....+++|+-   ..=|+..+.+.|.+.++++|+..|-..|+-|  +...|+-|++-..
T Consensus        49 ~g~v~~~e~l~~~l~~l~~~~~~~~~davlt---GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~  125 (281)
T COG2240          49 TGIVMPPEQLADLLNGLEAIDKLGECDAVLT---GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEV  125 (281)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCH
T ss_conf             8857988999999999985441344688997---0479889999999999998624987389967743679963526431


Q ss_pred             CC
Q ss_conf             10
Q gi|254780747|r  119 NI  120 (293)
Q Consensus       119 d~  120 (293)
                      -.
T Consensus       126 ~~  127 (281)
T COG2240         126 AE  127 (281)
T ss_pred             HH
T ss_conf             89


No 390
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.38  E-value=58  Score=13.43  Aligned_cols=21  Identities=19%  Similarity=0.490  Sum_probs=8.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466678999988777776666
Q gi|254780747|r  165 SPFSEVNPKAVQMMQDVVDSS  185 (293)
Q Consensus       165 ~p~~~~s~e~~~~~~~~l~~~  185 (293)
                      ||+..+.+..++.+..++..+
T Consensus       179 EPt~gLD~~~~~~i~~~i~~l  199 (255)
T PRK11300        179 EPAAGLNPKETKELDELIAEL  199 (255)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             875469999999999999999


No 391
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=21.31  E-value=58  Score=13.42  Aligned_cols=141  Identities=18%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             HHHHHHHHH---HCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHH-HHH-HHHCCCHHHHHHHHHHHCCEEEEE
Q ss_conf             999999998---414786799603-32332232100011100013013534-555-653021024567774204225531
Q gi|254780747|r   84 EAIFRAIQK---VKNRKPVITEVH-EMAASAGYLISCASNIIVAAETSLVG-SIG-VLFQYPYVKPFLDKLGVSIKSVKS  157 (293)
Q Consensus        84 ~~i~~ai~~---~k~~kpvva~~~-~~~~S~~Y~iAs~ad~I~a~p~s~vG-siG-v~~~~~~~~~ll~k~gi~~~~~~~  157 (293)
                      ++...|+.+   ++.+.|.--|++ -.|.+.+||  |+|+.|+.+.....- -+- |--+..-.+.++|+ .=++.-+|.
T Consensus        34 ~~f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyF--CgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~-~R~V~QLHw  110 (462)
T TIGR00538        34 EEFKTALIKSNNLYKKTPLSLYVHIPFCEKACYF--CGCNVIITRRKEKKDPYLEALKKEIALVAPLLDK-DREVAQLHW  110 (462)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCC--CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             7899998722567888784112455234121320--1466113055651016799999999998777524-894688762


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCC---CCHHH---HHHCCCCCC
Q ss_conf             552112346667899998877777666667789999851-----4999889988734982---37889---987798062
Q gi|254780747|r  158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES-----RNIPYDKTLVLSDGRI---WTGAE---AKKVGLIDV  226 (293)
Q Consensus       158 g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~-----R~~~~~~~~~~~~g~~---~~~~~---A~~~GLvD~  226 (293)
                      |-    |.| +-+|+++-+.+...+.+.+.+|-+.+.=+     |.++.|.+..+.+.+.   =.|=|   ..=..+|.+
T Consensus       111 GG----GTP-~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR  185 (462)
T TIGR00538       111 GG----GTP-TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNR  185 (462)
T ss_pred             CC----CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCC
T ss_conf             78----983-3378899999999999873201158447765237413788999999758966423521078555444313


Q ss_pred             CCCHHH
Q ss_conf             389899
Q gi|254780747|r  227 VGGQEE  232 (293)
Q Consensus       227 ig~~~~  232 (293)
                      |-.++=
T Consensus       186 ~QP~e~  191 (462)
T TIGR00538       186 IQPEEM  191 (462)
T ss_pred             CCCHHH
T ss_conf             486899


No 392
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=21.29  E-value=58  Score=13.42  Aligned_cols=14  Identities=21%  Similarity=0.513  Sum_probs=7.1

Q ss_pred             EEEEEEECCHHHHH
Q ss_conf             99766623869999
Q gi|254780747|r   41 IAIRGQIEDSQELI   54 (293)
Q Consensus        41 i~i~G~I~~~~~l~   54 (293)
                      -+.+|+|+..+...
T Consensus         4 ~DFDGTIT~~D~~~   17 (214)
T TIGR03333         4 CDFDGTITNNDNII   17 (214)
T ss_pred             ECCCCCCCCCHHHH
T ss_conf             36899878305599


No 393
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115   This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii  but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=21.25  E-value=48  Score=13.93  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             EEEEECCCCCCCCCCC--CCC-CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf             7996033233223210--001-11000130135345556530210245677742042255
Q gi|254780747|r   99 VITEVHEMAASAGYLI--SCA-SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV  155 (293)
Q Consensus        99 vva~~~~~~~S~~Y~i--As~-ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~  155 (293)
                      =+.|.+...|+.+--.  |.. +|.|...|+-=|-|||-+...+.++++|.+-++++-.+
T Consensus       213 dV~f~G~e~A~~a~~a~EAi~~~~~vligPSNPvtSIGpILal~Gire~Lrda~~kVVav  272 (359)
T TIGR01819       213 DVEFRGAEKAKAAPEAIEAIRDADVVLIGPSNPVTSIGPILALPGIREALRDATVKVVAV  272 (359)
T ss_pred             EEEECCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf             366406533668878999860599899778668111322327256899998369738997


No 394
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.   ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.19  E-value=58  Score=13.41  Aligned_cols=16  Identities=25%  Similarity=0.123  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHCCCCC
Q ss_conf             8999999997418776
Q gi|254780747|r  230 QEEVWQSLYALGVDQS  245 (293)
Q Consensus       230 ~~~a~~~l~~~~~~~~  245 (293)
                      ..+-+.-+..+...++
T Consensus       135 ~kQrv~iAraL~~~P~  150 (213)
T cd03259         135 QQQRVALARALAREPS  150 (213)
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             9999999876227999


No 395
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.14  E-value=58  Score=13.40  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCC---CHHHHHHHHHHHHHH-CCCCCEEEEECCCCCC
Q ss_conf             69999999998618998799997588888---889999999999984-1478679960332332
Q gi|254780747|r   50 SQELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQKV-KNRKPVITEVHEMAAS  109 (293)
Q Consensus        50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG---~~~~~~~i~~ai~~~-k~~kpvva~~~~~~~S  109 (293)
                      .+.+.+.++...+...+.||++-=.+.-+   +...-.++.+...+. +.+.||++-++.....
T Consensus        23 ~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~st~   86 (294)
T PRK04147         23 EQGLRQLVRFNIEKQGIDGLYVGGSTGEAFLLSTEERKQVLEIVAEEAKGKIKLIAQVGSVNTA   86 (294)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf             9999999999998779989997951316434899999999999999818973276347888889


No 396
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.03  E-value=59  Score=13.39  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCCEEEEE-CC
Q ss_conf             999999999841478679960332332232100011100013013534--555653021024567774204225531-55
Q gi|254780747|r   83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSIKSVKS-SP  159 (293)
Q Consensus        83 ~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~~~~~~-g~  159 (293)
                      ...|.++|+.+|++|||+++=++---.-|-++ .+|+++-......+-  .-|+++... -.+..+++|+..-+-.. ..
T Consensus        18 ~s~Ie~AI~alr~Gk~VIv~DdedREnEGDlv-~aAe~~T~e~i~fm~~~~~GliCv~~-~~~~~~~L~Lp~mv~~n~~~   95 (230)
T PRK00014         18 ATRLERALQHLRIGRPVILMDDFDRENEADLI-VAADKLTVPVMAQLIRDGSGIVCLCL-PGETLDRLELPPMVDSNRSR   95 (230)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCEEEEEC-CHHHHHHCCCCCCCCCCCCC
T ss_conf             40899999999879969998089987641589-67422999999999995896089744-99999767996556877776


Q ss_pred             CCCC-------CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf             2112-------34-666789999887777766666778999985149998899887349823788998779806238989
Q gi|254780747|r  160 MKAE-------PS-PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       160 ~K~~-------~~-p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~  231 (293)
                      |..+       .+ ..+..|..+|...-..           .+. .+-..++..  .-|.+| .-.|.+-|+-.+-|.-+
T Consensus        96 ~~T~ftvsvda~~g~tTGISa~DRa~TIr~-----------la~-~~~~~~Df~--~PGHVf-PL~A~~GGvl~R~GHTE  160 (230)
T PRK00014         96 YSTAFTVSIEAREGVTTGVSAVDRVTTIRA-----------AIA-PGARSGDVV--SPGHVF-PLRAQPGGVLTRRGHTE  160 (230)
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHHHHHHHH-----------HHC-CCCCHHHCC--CCCCCC-EEEECCCCEEECCCCHH
T ss_conf             778737888605886488668899999999-----------868-899867728--999812-57656798813477069


Q ss_pred             HHHHHHHHHCCCCCCCCEEECC
Q ss_conf             9999999741877653012014
Q gi|254780747|r  232 EVWQSLYALGVDQSIRKIKDWN  253 (293)
Q Consensus       232 ~a~~~l~~~~~~~~~~~~~~~~  253 (293)
                       +--.|..+++....-.+-..-
T Consensus       161 -asVdLa~LAGl~P~~vicEil  181 (230)
T PRK00014        161 -GSVDLAALAGLRPAGVLCELM  181 (230)
T ss_pred             -HHHHHHHHCCCCCEEEEEEEE
T ss_conf             -999999982999608999985


No 397
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.82  E-value=59  Score=13.36  Aligned_cols=59  Identities=17%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf             9999998618998799997588888889999999999984147867996033233223210
Q gi|254780747|r   54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI  114 (293)
Q Consensus        54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i  114 (293)
                      -..++++++--...--.+-+-.++-+....+.+++++.++  ..||.+|+-..+-|-..|.
T Consensus        47 ~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea--egPVlayCrsGtRs~~ly~  105 (130)
T COG3453          47 FAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA--EGPVLAYCRSGTRSLNLYG  105 (130)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHH
T ss_conf             4999999996698258763479987999999999999970--8987865457706889999


No 398
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=20.53  E-value=60  Score=13.32  Aligned_cols=187  Identities=16%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             HCCCCCEEEEECCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCH--------HHHHHHHHHHCCEEEEECCC
Q ss_conf             414786799603323322----321000111000130135345556530210--------24567774204225531552
Q gi|254780747|r   93 VKNRKPVITEVHEMAASA----GYLISCASNIIVAAETSLVGSIGVLFQYPY--------VKPFLDKLGVSIKSVKSSPM  160 (293)
Q Consensus        93 ~k~~kpvva~~~~~~~S~----~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~--------~~~ll~k~gi~~~~~~~g~~  160 (293)
                      +.+.+|++| ++|.++||    +=.+|-.-+..|.+.+++-=.++......+        ...+++++.+++..-..+..
T Consensus       280 L~~~~~IIA-IDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~  358 (512)
T PRK13477        280 LMKRRPIIA-IDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQ  358 (512)
T ss_pred             CCCCCCEEE-EECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCE
T ss_conf             157887799-8678757878999999998199686244999999999997596976899999998729879831888762


Q ss_pred             CCCCCCCCCC-----CHHHHH---------HHHHHHHHHHHHHH---HHHHHCCCCCHH-----HHHHHHCCCCC--CHH
Q ss_conf             1123466678-----999988---------77777666667789---999851499988-----99887349823--788
Q gi|254780747|r  161 KAEPSPFSEV-----NPKAVQ---------MMQDVVDSSYHWFV---RLVSESRNIPYD-----KTLVLSDGRIW--TGA  216 (293)
Q Consensus       161 K~~~~p~~~~-----s~e~~~---------~~~~~l~~~~~~f~---~~Va~~R~~~~~-----~~~~~~~g~~~--~~~  216 (293)
                      +-..+- .+.     |++--+         .+.+.+......|.   +.|.++|.+-..     +++-+.++.+-  .-+
T Consensus       359 ~i~lng-~dvt~~IRs~eVs~~vS~vA~~p~VR~~l~~~QR~~a~~~g~V~eGRDIGTVVfPdA~lK~fLtAs~e~RA~R  437 (512)
T PRK13477        359 RVWING-EDVTEAIRSPEVTSSVSAIAAQPCVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVEERARR  437 (512)
T ss_pred             EEEECC-EEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCEEEEEECCHHHHHHH
T ss_conf             899888-5706655447889999998397989999999999984659999979987666778999669998999999999


Q ss_pred             HHHH---CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9987---798062389899999999741877653012014421124556511047787888888876303
Q gi|254780747|r  217 EAKK---VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK  283 (293)
Q Consensus       217 ~A~~---~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (293)
                      +.+|   .|.  ...++++.++.+.++......+.+-+..+..+-..-...+......++..+.+..+..
T Consensus       438 R~~el~~~g~--~~~s~~~i~~~I~~RD~~D~~R~~sPL~~A~DAi~IDTs~lsieeVv~kI~~l~~~ki  505 (512)
T PRK13477        438 RALDLEAQGF--PVIDLEELEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRDRI  505 (512)
T ss_pred             HHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             9999996688--8789999999999861431447768886589848998999999999999999999753


No 399
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.43  E-value=60  Score=13.31  Aligned_cols=154  Identities=12%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEC-CCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCCCCCCC--CCCCCC-
Q ss_conf             99999999986189987999975-8888-888999999999998414786799603323--3223210001--110001-
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSL-SSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMA--ASAGYLISCA--SNIIVA-  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i-~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~--~S~~Y~iAs~--ad~I~a-  123 (293)
                      +-+++..+++. +-.+..  |.| |+.| ..+..+.++..+|++.- +.|+-...++..  +.+.|+-|.-  +|-|-. 
T Consensus       154 ~yyv~~a~~l~-~~Gad~--I~ikD~aGll~P~~~~eLV~aLk~~~-~lpI~~HtH~t~Gla~an~laAieAGaDivD~a  229 (463)
T PRK12331        154 DYFVKLAKEMQ-EIGADS--ICIKDMAGILTPYVAYELVKCIKENV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA  229 (463)
T ss_pred             HHHHHHHHHHH-HCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf             99999999999-649988--99867867768899999999999744-985699836887579999999998499999623


Q ss_pred             -CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH---HHHHCCC
Q ss_conf             -30135345556530210245677742042255315521123466-678999988777776666677899---9985149
Q gi|254780747|r  124 -AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVR---LVSESRN  198 (293)
Q Consensus       124 -~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~-~~~s~e~~~~~~~~l~~~~~~f~~---~Va~~R~  198 (293)
                       +|.|.      ....|....+...+.-              .++ ..+..+....+.....++.+.+..   .....++
T Consensus       230 ~~~~s~------gtsqP~~~s~v~~l~~--------------~~~~~~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~  289 (463)
T PRK12331        230 ISPFAG------GTSQPATESMVIALQD--------------LGYDTGLDLEELSEIAEYFNPIRDHYREEGILNPKVKD  289 (463)
T ss_pred             CCCCCC------CCCCCCHHHHHHHHHC--------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             535467------9789879999999853--------------89999989999999999999999999874478875766


Q ss_pred             CCHHHHHHHHCCCCCC--HHHHHHCCCCCCCC
Q ss_conf             9988998873498237--88998779806238
Q gi|254780747|r  199 IPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG  228 (293)
Q Consensus       199 ~~~~~~~~~~~g~~~~--~~~A~~~GLvD~ig  228 (293)
                      .+.+-..--.=|..+|  -.|+.++|+.|+..
T Consensus       290 ~d~~v~~hq~PGGm~snl~~Ql~~~g~~dr~~  321 (463)
T PRK12331        290 VEPKTLIYQVPGGMLSNLLSQLKEQGLADKYE  321 (463)
T ss_pred             CCHHHEEECCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             77435123687306678999999778476799


No 400
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of,  the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems.  These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein  respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.42  E-value=60  Score=13.31  Aligned_cols=106  Identities=14%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC---CCCEEE-EECCCC---CCCCCCCCCCC--C
Q ss_conf             69999999998618-99879999758888888999999999998414---786799-603323---32232100011--1
Q gi|254780747|r   50 SQELIERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVIT-EVHEMA---ASAGYLISCAS--N  119 (293)
Q Consensus        50 ~~~l~~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~---~kpvva-~~~~~~---~S~~Y~iAs~a--d  119 (293)
                      .+.+.+.|+.+.+. |..++|++.-..+.+..  .+.|-..++++++   .+||+. ...++.   .++||..+..+  +
T Consensus        72 ~~kL~~~I~~~~~~yP~~k~I~V~tTC~seiI--GDDi~~v~~~~~~e~~~~~vi~v~tpgf~g~~~~~G~~~~~~~~~~  149 (415)
T cd01977          72 EKKLKKNIIEAFKEFPDIKRMTVYTTCTTALI--GDDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWIN  149 (415)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH--CCCHHHHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999985799656999767708876--4689999999876448996799426110674312588999999999


Q ss_pred             CCC--CCHH-HH---HHHHH---HHHCCCHHHHHHHHHHHCCEEEEE
Q ss_conf             000--1301-35---34555---653021024567774204225531
Q gi|254780747|r  120 IIV--AAET-SL---VGSIG---VLFQYPYVKPFLDKLGVSIKSVKS  157 (293)
Q Consensus       120 ~I~--a~p~-s~---vGsiG---v~~~~~~~~~ll~k~gi~~~~~~~  157 (293)
                      +..  +.|. ..   +..+|   ......-++++|+.+||++...-.
T Consensus       150 ~~~~~~~p~~~~~~~vNiig~~~~~gd~~eikrll~~~Gi~v~~~~~  196 (415)
T cd01977         150 QKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFT  196 (415)
T ss_pred             HHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             97253587768998168837988855289999999975995799717


No 401
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=20.09  E-value=61  Score=13.26  Aligned_cols=26  Identities=15%  Similarity=0.362  Sum_probs=10.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99975888888899999999999841
Q gi|254780747|r   69 LIVSLSSPGGSAYAGEAIFRAIQKVK   94 (293)
Q Consensus        69 ivL~i~SpGG~~~~~~~i~~ai~~~k   94 (293)
                      ++|+=-+-|-++....++.+.|++++
T Consensus       142 LiLDEPTsgLD~~~~~~i~~li~~L~  167 (251)
T PRK09544        142 LVLDEPTQGVDVNGQVALYDLIDQLR  167 (251)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99809864689999999999999999


No 402
>pfam00681 Plectin Plectin repeat. This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Probab=20.05  E-value=61  Score=13.26  Aligned_cols=18  Identities=39%  Similarity=0.422  Sum_probs=14.6

Q ss_pred             CCCCCHHHHHHCCCCCCC
Q ss_conf             982378899877980623
Q gi|254780747|r  210 GRIWTGAEAKKVGLIDVV  227 (293)
Q Consensus       210 g~~~~~~~A~~~GLvD~i  227 (293)
                      |.-++-++|++.||+|.=
T Consensus        19 g~rlsv~~A~~~glid~~   36 (45)
T pfam00681        19 GERLSVEEAVRRGLIDPE   36 (45)
T ss_pred             CCEECHHHHHHCCCCCHH
T ss_conf             988189999996994999


No 403
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=20.02  E-value=45  Score=14.09  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             HHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             65302102456777420422553155211234666789999887
Q gi|254780747|r  134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM  177 (293)
Q Consensus       134 v~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~  177 (293)
                      .+|..-..++.-+++|++..+-+.|..-..    .++|+|+-+.
T Consensus       179 TYMAaeaL~~aak~~g~~ikVETqGs~G~~----n~LT~e~I~~  218 (638)
T PRK09765        179 TYMAAEYLEKAGRKLGVNVYVEKQGANGIE----GRLTADQLNS  218 (638)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCCHHHHHH
T ss_conf             999999999999983985899746876778----8899999985


Done!