Query gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 293
No_of_seqs 176 out of 2224
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 19:11:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780747.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00706 SppA_dom signal pept 100.0 0 0 420.8 16.8 206 37-242 1-224 (224)
2 PRK10949 protease 4; Provision 100.0 0 0 397.2 22.9 231 31-263 321-561 (618)
3 cd07022 S49_Sppa_36K_type Sign 100.0 0 0 381.1 17.8 201 37-238 1-214 (214)
4 TIGR00705 SppA_67K signal pept 100.0 0 0 378.7 19.5 235 32-266 316-568 (614)
5 cd07023 S49_Sppa_N_C Signal pe 100.0 0 0 376.8 19.5 201 37-237 1-207 (208)
6 cd07019 S49_SppA_1 Signal pept 100.0 0 0 369.8 17.0 201 37-238 1-211 (211)
7 COG0616 SppA Periplasmic serin 100.0 0 0 359.5 22.7 212 35-246 58-278 (317)
8 cd07018 S49_SppA_67K_type Sign 100.0 0 0 352.1 15.9 190 49-239 30-222 (222)
9 PRK10949 protease 4; Provision 100.0 0 0 318.5 22.4 240 3-243 21-301 (618)
10 PRK11778 putative periplasmic 100.0 0 0 313.0 18.0 236 33-279 66-308 (317)
11 cd07014 S49_SppA Signal peptid 100.0 1.7E-43 0 293.8 14.2 162 40-238 1-177 (177)
12 pfam01343 Peptidase_S49 Peptid 100.0 1.2E-43 0 294.7 10.7 152 92-243 2-153 (154)
13 TIGR00705 SppA_67K signal pept 100.0 4.9E-39 1.3E-43 265.6 13.1 238 6-244 8-291 (614)
14 cd00394 Clp_protease_like Case 100.0 1E-29 2.5E-34 207.1 13.8 158 40-227 1-161 (161)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 2.3E-21 5.9E-26 154.4 13.3 153 40-227 2-160 (160)
16 cd07021 Clp_protease_NfeD_like 99.9 1.9E-21 4.8E-26 155.0 12.2 160 38-235 1-177 (178)
17 cd07020 Clp_protease_NfeD_1 No 99.9 1.9E-20 4.8E-25 148.7 12.8 169 38-240 1-176 (187)
18 cd07015 Clp_protease_NfeD Nodu 99.8 2.3E-18 6E-23 135.5 11.1 164 38-235 1-171 (172)
19 COG1030 NfeD Membrane-bound se 99.7 8E-16 2E-20 119.5 18.7 173 31-241 21-200 (436)
20 pfam00574 CLP_protease Clp pro 99.7 1.5E-15 3.8E-20 117.9 13.7 158 40-229 18-180 (182)
21 cd07013 S14_ClpP Caseinolytic 99.7 1.7E-15 4.2E-20 117.5 13.8 156 40-227 2-162 (162)
22 COG0740 ClpP Protease subunit 99.7 9.5E-16 2.4E-20 119.1 11.7 162 41-234 30-196 (200)
23 PRK12553 ATP-dependent Clp pro 99.6 3.5E-14 9E-19 109.2 13.1 162 40-231 34-200 (204)
24 PRK00277 clpP ATP-dependent Cl 99.6 5E-14 1.3E-18 108.2 13.8 159 40-230 29-192 (197)
25 CHL00028 clpP ATP-dependent Cl 99.6 6.9E-14 1.8E-18 107.3 13.7 160 40-230 32-196 (201)
26 PRK12551 ATP-dependent Clp pro 99.6 9.4E-14 2.4E-18 106.5 12.5 160 40-231 27-191 (196)
27 pfam01972 SDH_sah Serine dehyd 99.4 1.4E-11 3.5E-16 92.9 14.2 188 33-241 48-262 (286)
28 PRK12552 ATP-dependent Clp pro 99.4 7.2E-12 1.8E-16 94.6 11.2 158 40-229 32-213 (222)
29 KOG0840 consensus 99.3 5.8E-11 1.5E-15 88.9 10.2 158 41-230 95-257 (275)
30 PRK05869 enoyl-CoA hydratase; 99.2 4.5E-10 1.1E-14 83.4 11.8 163 33-241 13-198 (225)
31 PRK06495 enoyl-CoA hydratase; 99.2 3.3E-10 8.4E-15 84.2 11.1 158 34-241 10-193 (257)
32 PRK08138 enoyl-CoA hydratase; 99.2 7.1E-10 1.8E-14 82.1 12.5 163 33-241 12-196 (260)
33 PRK06688 enoyl-CoA hydratase; 99.2 9E-10 2.3E-14 81.5 12.4 161 34-241 11-199 (263)
34 PRK09674 enoyl-CoA hydratase-i 99.1 1.4E-09 3.5E-14 80.3 12.4 162 34-241 10-193 (257)
35 PRK07657 enoyl-CoA hydratase; 99.1 1.3E-09 3.2E-14 80.5 11.7 164 31-241 8-197 (261)
36 PRK07511 enoyl-CoA hydratase; 99.1 1.5E-09 3.9E-14 80.0 12.0 160 34-240 9-196 (259)
37 PRK07854 enoyl-CoA hydratase; 99.1 1.6E-09 4E-14 79.9 12.1 163 35-244 7-188 (243)
38 PRK07830 consensus 99.1 1.7E-09 4.2E-14 79.8 11.9 161 35-241 18-203 (267)
39 PRK06951 consensus 99.1 1.6E-09 4.2E-14 79.8 11.5 160 35-241 8-189 (254)
40 PRK09076 enoyl-CoA hydratase; 99.1 2.5E-09 6.5E-14 78.6 12.3 161 34-241 9-194 (258)
41 PRK07658 enoyl-CoA hydratase; 99.1 3.3E-09 8.3E-14 77.9 12.8 161 35-241 9-193 (257)
42 PRK06494 enoyl-CoA hydratase; 99.1 2.6E-09 6.6E-14 78.6 12.2 160 35-241 11-193 (259)
43 PRK05864 enoyl-CoA hydratase; 99.1 2.9E-09 7.3E-14 78.3 12.1 164 32-241 7-202 (269)
44 PRK06144 enoyl-CoA hydratase; 99.1 2.2E-09 5.7E-14 79.0 11.5 163 35-242 15-203 (262)
45 PRK06142 enoyl-CoA hydratase; 99.1 2.4E-09 6.2E-14 78.7 11.7 159 35-240 12-207 (271)
46 PRK05995 enoyl-CoA hydratase; 99.1 2.2E-09 5.7E-14 79.0 11.3 159 35-241 11-197 (261)
47 TIGR03210 badI 2-ketocyclohexa 99.1 2.4E-09 6.1E-14 78.8 11.5 157 35-240 9-192 (256)
48 PRK07938 enoyl-CoA hydratase; 99.1 3.3E-09 8.5E-14 77.9 11.7 160 32-241 6-190 (249)
49 PRK07510 consensus 99.1 4.9E-09 1.2E-13 76.8 12.4 162 34-241 11-202 (266)
50 PRK08139 enoyl-CoA hydratase; 99.1 4.6E-09 1.2E-13 77.0 12.2 160 34-241 16-201 (265)
51 PRK06210 enoyl-CoA hydratase; 99.1 5.9E-09 1.5E-13 76.3 12.7 161 34-241 12-207 (272)
52 PRK07110 polyketide biosynthes 99.1 3.9E-09 1E-13 77.4 11.7 162 35-242 11-202 (257)
53 PRK09245 enoyl-CoA hydratase; 99.1 5.4E-09 1.4E-13 76.6 12.4 162 34-241 9-202 (266)
54 PRK11730 fadB multifunctional 99.1 9.1E-10 2.3E-14 81.4 8.4 160 32-238 11-198 (715)
55 PRK05674 gamma-carboxygeranoyl 99.1 4.7E-09 1.2E-13 76.9 12.0 160 34-241 12-199 (271)
56 PRK06023 enoyl-CoA hydratase; 99.1 4.9E-09 1.3E-13 76.8 12.0 160 35-241 10-193 (248)
57 PRK05862 enoyl-CoA hydratase; 99.1 6.2E-09 1.6E-13 76.2 12.4 161 35-241 11-193 (257)
58 PRK06190 enoyl-CoA hydratase; 99.0 3E-09 7.7E-14 78.2 10.7 160 35-241 11-193 (258)
59 PRK05980 enoyl-CoA hydratase; 99.0 7.1E-09 1.8E-13 75.8 12.6 160 35-241 10-199 (260)
60 PRK03580 carnitinyl-CoA dehydr 99.0 5.5E-09 1.4E-13 76.5 11.8 161 35-241 11-194 (262)
61 PRK06143 enoyl-CoA hydratase; 99.0 1E-08 2.6E-13 74.9 13.2 165 30-241 11-200 (260)
62 PRK09120 p-hydroxycinnamoyl Co 99.0 5.8E-09 1.5E-13 76.4 11.9 161 35-241 16-205 (277)
63 PRK11154 fadJ multifunctional 99.0 2.6E-09 6.6E-14 78.6 10.1 164 31-241 9-202 (706)
64 PRK07629 consensus 99.0 7.3E-09 1.9E-13 75.7 12.3 160 34-241 10-197 (261)
65 PRK05809 3-hydroxybutyryl-CoA 99.0 8.4E-09 2.2E-13 75.3 12.6 161 35-242 11-197 (260)
66 cd06558 crotonase-like Crotona 99.0 9.1E-09 2.3E-13 75.1 12.6 160 35-241 6-192 (195)
67 PRK05870 enoyl-CoA hydratase; 99.0 1.2E-08 3.1E-13 74.3 13.1 165 34-244 9-199 (254)
68 PRK07396 naphthoate synthase; 99.0 2.8E-09 7.1E-14 78.4 9.6 161 35-241 20-206 (273)
69 PRK05981 enoyl-CoA hydratase; 99.0 1.1E-08 2.8E-13 74.6 12.6 160 35-241 11-202 (266)
70 PRK07260 enoyl-CoA hydratase; 99.0 1.1E-08 2.8E-13 74.6 12.5 161 35-241 11-199 (260)
71 PRK06563 enoyl-CoA hydratase; 99.0 5.6E-09 1.4E-13 76.5 10.9 161 34-241 5-191 (255)
72 PRK07509 enoyl-CoA hydratase; 99.0 1.5E-08 3.7E-13 73.8 12.9 161 35-241 10-203 (262)
73 PRK08260 enoyl-CoA hydratase; 99.0 5.7E-09 1.5E-13 76.4 10.7 160 35-241 11-209 (293)
74 PRK07799 enoyl-CoA hydratase; 99.0 7.9E-09 2E-13 75.5 11.4 161 35-241 12-199 (263)
75 PRK08272 enoyl-CoA hydratase; 99.0 1.3E-08 3.2E-13 74.2 12.4 159 35-242 17-229 (308)
76 PRK07327 enoyl-CoA hydratase; 99.0 6.3E-09 1.6E-13 76.1 10.7 164 33-242 17-206 (271)
77 PRK08290 enoyl-CoA hydratase; 99.0 1.1E-08 2.9E-13 74.5 11.9 159 35-242 11-213 (284)
78 PRK11423 methylmalonyl-CoA dec 99.0 1E-08 2.7E-13 74.7 11.7 159 35-241 11-195 (261)
79 PRK07468 enoyl-CoA hydratase; 99.0 2.8E-08 7E-13 72.1 13.8 156 34-237 11-194 (262)
80 PRK06127 enoyl-CoA hydratase; 99.0 1.6E-08 4.1E-13 73.6 12.4 160 35-241 18-205 (269)
81 PRK12478 enoyl-CoA hydratase; 99.0 1E-08 2.6E-13 74.8 11.3 157 35-241 12-208 (298)
82 PRK08140 enoyl-CoA hydratase; 99.0 1.6E-08 4.1E-13 73.6 11.6 160 35-241 11-198 (262)
83 PRK07659 enoyl-CoA hydratase; 98.9 2.4E-08 6.1E-13 72.5 12.1 149 34-229 12-185 (260)
84 PRK08252 enoyl-CoA hydratase; 98.9 1.9E-08 4.9E-13 73.1 11.6 161 35-242 10-191 (254)
85 PRK08259 enoyl-CoA hydratase; 98.9 1.6E-08 4.1E-13 73.6 10.9 161 35-242 10-193 (254)
86 PRK08258 enoyl-CoA hydratase; 98.9 2.9E-08 7.3E-13 72.0 12.0 162 35-241 17-206 (270)
87 PRK08321 naphthoate synthase; 98.9 2.3E-08 5.9E-13 72.6 11.3 160 35-241 32-235 (302)
88 PRK08150 enoyl-CoA hydratase; 98.9 4.8E-08 1.2E-12 70.6 11.2 159 35-241 18-200 (264)
89 TIGR03189 dienoyl_CoA_hyt cycl 98.9 6.5E-08 1.7E-12 69.7 11.9 149 35-231 8-177 (251)
90 PRK07827 enoyl-CoA hydratase; 98.9 1.4E-07 3.6E-12 67.6 13.3 156 35-237 10-191 (255)
91 COG1024 CaiD Enoyl-CoA hydrata 98.8 1.1E-07 2.8E-12 68.3 12.5 159 36-241 13-198 (257)
92 KOG1680 consensus 98.8 3.1E-08 7.9E-13 71.8 9.6 160 34-241 43-226 (290)
93 pfam00378 ECH Enoyl-CoA hydrat 98.7 1.1E-07 2.9E-12 68.2 9.8 131 51-228 20-168 (169)
94 PRK06213 enoyl-CoA hydratase; 98.7 4.5E-07 1.1E-11 64.5 11.0 160 35-242 10-192 (229)
95 PRK06072 enoyl-CoA hydratase; 98.7 1.1E-06 2.7E-11 62.1 12.7 158 38-242 2-181 (240)
96 PRK07112 polyketide biosynthes 98.6 5.2E-07 1.3E-11 64.1 10.8 152 35-235 11-184 (251)
97 TIGR00493 clpP ATP-dependent C 98.4 1.6E-06 4E-11 61.1 7.1 154 41-228 30-190 (192)
98 TIGR02441 fa_ox_alpha_mit fatt 98.3 2.1E-06 5.2E-11 60.3 6.8 96 35-130 20-144 (740)
99 PRK05617 enoyl-CoA hydratase; 98.2 7.6E-06 1.9E-10 56.7 7.4 102 34-135 14-148 (356)
100 PRK08788 enoyl-CoA hydratase; 98.1 1.8E-05 4.7E-10 54.3 8.3 94 95-235 119-213 (286)
101 TIGR02440 FadJ fatty oxidation 97.8 0.00041 1E-08 45.8 10.6 164 33-242 6-198 (732)
102 KOG1681 consensus 97.8 0.00025 6.3E-09 47.2 9.2 165 32-242 26-228 (292)
103 PRK12319 acetyl-CoA carboxylas 97.7 0.00043 1.1E-08 45.7 9.1 122 51-230 85-214 (256)
104 PRK05724 acetyl-CoA carboxylas 97.6 0.00081 2.1E-08 44.0 9.2 122 51-230 137-266 (318)
105 CHL00198 accA acetyl-CoA carbo 97.5 0.0012 3E-08 43.0 9.1 122 51-230 141-270 (322)
106 COG0447 MenB Dihydroxynaphthoi 97.5 0.0025 6.5E-08 40.9 10.4 158 35-241 26-219 (282)
107 TIGR02280 PaaB1 phenylacetate 97.4 0.00057 1.5E-08 44.9 7.0 162 35-242 6-196 (259)
108 PRK07189 malonate decarboxylas 97.4 0.00082 2.1E-08 43.9 7.3 83 51-133 90-184 (302)
109 TIGR03133 malonate_beta malona 97.2 0.0023 5.9E-08 41.1 7.7 83 51-133 81-175 (274)
110 KOG1679 consensus 97.1 0.0016 4.1E-08 42.1 6.5 134 51-231 61-213 (291)
111 TIGR03222 benzo_boxC benzoyl-C 97.1 0.00051 1.3E-08 45.2 3.8 74 52-125 52-148 (548)
112 TIGR03200 dearomat_oah 6-oxocy 97.0 0.0025 6.3E-08 40.9 6.4 97 39-135 39-163 (360)
113 PRK05654 acetyl-CoA carboxylas 96.9 0.021 5.4E-07 35.1 10.3 125 51-241 146-280 (288)
114 COG0825 AccA Acetyl-CoA carbox 96.8 0.0033 8.4E-08 40.1 5.7 120 53-230 139-266 (317)
115 pfam00549 Ligase_CoA CoA-ligas 96.6 0.01 2.6E-07 37.1 7.2 72 38-109 23-96 (128)
116 TIGR01929 menB naphthoate synt 96.6 0.038 9.7E-07 33.5 9.7 157 35-241 11-219 (278)
117 TIGR00513 accA acetyl-CoA carb 96.5 0.0066 1.7E-07 38.2 5.5 121 52-228 144-273 (329)
118 PRK08184 enoyl-CoA hydratase; 96.5 0.0015 3.8E-08 42.3 1.9 73 52-126 67-161 (558)
119 PTZ00187 succinyl-CoA syntheta 96.5 0.011 2.9E-07 36.7 6.5 71 36-109 162-257 (309)
120 COG0777 AccD Acetyl-CoA carbox 96.3 0.094 2.4E-06 31.0 10.4 125 51-241 144-278 (294)
121 COG0074 SucD Succinyl-CoA synt 96.1 0.033 8.5E-07 33.8 7.3 71 35-108 145-240 (293)
122 KOG0016 consensus 96.0 0.12 3.1E-06 30.2 9.8 140 50-236 37-201 (266)
123 PRK05678 succinyl-CoA syntheta 95.6 0.048 1.2E-06 32.8 6.3 71 35-109 145-240 (289)
124 pfam08496 Peptidase_S49_N Pept 95.6 0.092 2.3E-06 31.0 7.7 23 68-91 99-121 (154)
125 KOG1682 consensus 95.4 0.23 6E-06 28.5 10.7 142 52-241 63-223 (287)
126 COG0793 Prc Periplasmic protea 95.3 0.15 4E-06 29.6 8.0 78 38-116 205-307 (406)
127 TIGR03134 malonate_gamma malon 95.0 0.074 1.9E-06 31.6 5.9 78 53-130 53-142 (238)
128 CHL00174 accD acetyl-CoA carbo 95.0 0.3 7.5E-06 27.8 11.0 138 37-241 130-300 (305)
129 TIGR00515 accD acetyl-CoA carb 94.8 0.16 4.1E-06 29.5 7.0 139 36-240 113-282 (292)
130 pfam06833 MdcE Malonate decarb 94.7 0.11 2.8E-06 30.6 6.0 78 53-130 51-140 (234)
131 TIGR02437 FadB fatty oxidation 94.6 0.34 8.6E-06 27.5 8.4 139 51-238 38-199 (716)
132 pfam03572 Peptidase_S41 Peptid 94.3 0.24 6E-06 28.5 6.9 81 38-119 2-110 (166)
133 COG3904 Predicted periplasmic 93.8 0.55 1.4E-05 26.1 10.6 89 37-130 75-166 (245)
134 smart00245 TSPc tail specific 93.6 0.57 1.4E-05 26.1 7.9 55 36-91 28-84 (192)
135 pfam01740 STAS STAS domain. Th 93.1 0.73 1.9E-05 25.4 8.7 67 34-100 6-76 (106)
136 PRK11186 carboxy-terminal prot 92.9 0.65 1.7E-05 25.7 7.3 40 50-90 370-410 (673)
137 cd07560 Peptidase_S41_CPP C-te 92.9 0.77 2E-05 25.2 8.4 54 37-91 49-104 (211)
138 TIGR02717 AcCoA-syn-alpha acet 92.9 0.27 6.9E-06 28.1 5.2 99 35-150 153-274 (457)
139 pfam01039 Carboxyl_trans Carbo 91.8 1 2.6E-05 24.4 7.1 81 51-133 79-167 (487)
140 cd07042 STAS_SulP_like_sulfate 89.7 1.6 4.1E-05 23.2 9.1 70 33-102 5-78 (107)
141 cd07563 Peptidase_S41_IRBP Int 89.5 1.7 4.3E-05 23.1 7.8 79 37-118 64-179 (250)
142 TIGR01016 sucCoAbeta succinyl- 88.7 1.9 4.9E-05 22.7 6.4 58 50-110 295-356 (389)
143 PRK00696 sucC succinyl-CoA syn 88.5 1.9 4.9E-05 22.8 6.3 136 48-192 26-191 (388)
144 KOG1684 consensus 87.9 2.2 5.5E-05 22.4 6.7 112 37-148 47-194 (401)
145 TIGR01088 aroQ 3-dehydroquinat 87.2 1.5 3.9E-05 23.3 5.1 62 52-119 56-122 (144)
146 PRK13643 cbiO cobalt transport 86.9 2 5.1E-05 22.6 5.6 25 163-187 168-192 (288)
147 PRK09483 response regulator; P 85.9 2.8 7.1E-05 21.7 9.6 168 41-226 27-211 (216)
148 cd07562 Peptidase_S41_TRI Tric 85.9 2.8 7.1E-05 21.7 7.3 83 33-119 84-186 (266)
149 PRK13647 cbiO cobalt transport 85.9 2.7 6.9E-05 21.8 5.8 95 52-153 145-239 (273)
150 PRK13638 cbiO cobalt transport 84.2 3.1 7.9E-05 21.4 5.5 96 51-152 142-237 (271)
151 PRK13636 cbiO cobalt transport 84.0 3.2 8.1E-05 21.4 5.4 21 165-185 167-187 (285)
152 PRK13639 cbiO cobalt transport 83.0 3.3 8.3E-05 21.3 5.1 21 165-185 163-183 (275)
153 PRK13631 cbiO cobalt transport 81.6 2.4 6.2E-05 22.1 4.1 25 163-187 200-224 (320)
154 KOG1255 consensus 81.2 4.3 0.00011 20.5 6.4 44 53-103 83-126 (329)
155 PRK13649 cbiO cobalt transport 81.1 4.4 0.00011 20.5 5.5 24 163-186 169-192 (280)
156 PRK13646 cbiO cobalt transport 80.4 4.6 0.00012 20.3 5.3 21 165-185 171-191 (286)
157 cd07561 Peptidase_S41_CPP_like 80.0 4.7 0.00012 20.3 7.7 68 34-102 62-131 (256)
158 PRK13651 cobalt transporter AT 80.0 4.8 0.00012 20.2 5.3 25 163-187 185-209 (304)
159 pfam01515 PTA_PTB Phosphate ac 78.1 5.4 0.00014 19.9 6.4 32 195-226 88-119 (319)
160 PRK13641 cbiO cobalt transport 78.0 5.5 0.00014 19.9 5.2 25 163-187 169-193 (286)
161 PRK09604 putative DNA-binding/ 78.0 3.6 9.1E-05 21.0 4.0 50 52-103 54-110 (335)
162 CHL00131 ycf16 sulfate ABC tra 77.7 5.6 0.00014 19.8 5.6 26 69-94 172-197 (252)
163 cd00578 L-fuc_L-ara-isomerases 76.9 5.9 0.00015 19.7 7.3 61 38-105 37-97 (452)
164 PRK13637 cbiO cobalt transport 76.7 6 0.00015 19.6 5.0 26 163-188 168-193 (287)
165 cd06567 Peptidase_S41 C-termin 75.3 6.5 0.00017 19.4 8.2 78 38-117 61-165 (224)
166 pfam02503 PP_kinase Polyphosph 74.9 6.6 0.00017 19.4 5.4 54 50-107 345-399 (678)
167 COG0528 PyrH Uridylate kinase 73.2 7.3 0.00019 19.1 5.3 101 65-168 4-114 (238)
168 PTZ00340 O-sialoglycoprotein e 72.8 4.9 0.00012 20.2 3.6 51 51-103 58-115 (348)
169 PRK13633 cobalt transporter AT 72.7 7.5 0.00019 19.0 5.9 21 165-185 171-191 (281)
170 PRK13648 cbiO cobalt transport 72.5 7.5 0.00019 19.0 4.9 14 221-234 217-230 (269)
171 PRK09390 fixJ response regulat 72.2 7.7 0.0002 18.9 10.1 136 49-206 35-175 (202)
172 PRK05443 polyphosphate kinase; 71.9 7.8 0.0002 18.9 5.4 54 50-107 352-406 (692)
173 PRK10575 iron-hydroxamate tran 71.7 7.9 0.0002 18.9 6.2 22 164-185 172-193 (265)
174 pfam04273 DUF442 Putative phos 71.2 8.1 0.00021 18.8 5.2 73 38-113 31-103 (110)
175 PRK13635 cbiO cobalt transport 70.4 8.5 0.00022 18.7 5.0 94 51-152 146-241 (279)
176 TIGR00853 pts-lac PTS system, 70.1 5.6 0.00014 19.8 3.4 81 69-161 48-130 (142)
177 PRK11231 fecE iron-dicitrate t 69.5 8.8 0.00023 18.6 6.6 17 77-93 168-184 (255)
178 TIGR01369 CPSaseII_lrg carbamo 69.3 8.9 0.00023 18.5 5.0 111 64-187 4-140 (1089)
179 cd06844 STAS Sulphate Transpor 68.0 9.5 0.00024 18.4 8.9 67 35-101 6-76 (100)
180 pfam01220 DHquinase_II Dehydro 67.2 9.8 0.00025 18.3 4.5 66 51-123 54-124 (140)
181 PRK13640 cbiO cobalt transport 66.8 10 0.00025 18.2 5.4 23 164-186 169-191 (283)
182 TIGR01326 OAH_OAS_sulfhy O-ace 66.3 2.3 6E-05 22.2 0.8 78 48-130 127-210 (434)
183 COG0045 SucC Succinyl-CoA synt 65.8 10 0.00027 18.1 7.4 90 98-192 90-189 (387)
184 PRK13632 cbiO cobalt transport 65.7 10 0.00027 18.1 5.5 35 58-94 156-190 (273)
185 PRK13634 cbiO cobalt transport 65.5 11 0.00027 18.1 4.5 23 164-186 157-179 (276)
186 PRK10253 iron-enterobactin tra 65.1 11 0.00027 18.0 5.9 25 69-93 165-189 (265)
187 PRK07811 cystathionine gamma-s 64.8 5.6 0.00014 19.8 2.5 62 55-121 134-198 (386)
188 PRK13526 glutamine amidotransf 64.4 11 0.00028 17.9 5.1 65 37-105 4-81 (179)
189 PRK13644 cbiO cobalt transport 63.6 11 0.00029 17.8 5.8 26 69-94 158-183 (274)
190 PRK09958 DNA-binding transcrip 63.1 12 0.0003 17.8 10.0 149 41-207 25-178 (204)
191 PRK09580 sufC cysteine desulfu 62.7 12 0.0003 17.7 6.4 38 56-95 156-193 (248)
192 TIGR00612 ispG_gcpE 4-hydroxy- 61.7 12 0.00032 17.6 4.8 75 49-126 40-118 (633)
193 PRK08249 cystathionine gamma-s 61.3 5.1 0.00013 20.0 1.8 49 56-109 141-190 (398)
194 TIGR03410 urea_trans_UrtE urea 60.7 13 0.00033 17.5 5.7 14 165-178 157-170 (230)
195 PRK13645 cbiO cobalt transport 59.6 14 0.00034 17.4 4.9 25 163-187 174-198 (289)
196 cd00466 DHQase_II Dehydroquina 59.2 14 0.00035 17.4 5.0 66 51-123 53-123 (140)
197 PRK07810 O-succinylhomoserine 59.1 5.8 0.00015 19.7 1.8 49 56-109 150-199 (406)
198 PRK06234 methionine gamma-lyas 59.0 7.2 0.00018 19.1 2.2 15 141-155 120-134 (399)
199 PRK13548 hmuV hemin importer A 58.5 14 0.00036 17.3 6.3 19 165-183 166-184 (257)
200 PRK13650 cbiO cobalt transport 57.9 14 0.00037 17.2 5.3 26 69-94 159-184 (276)
201 PRK12443 uridylate kinase; Rev 57.7 15 0.00037 17.2 6.3 100 66-169 4-115 (247)
202 TIGR02151 IPP_isom_2 isopenten 57.2 15 0.00038 17.1 3.8 55 51-109 139-201 (349)
203 PRK09028 cystathionine beta-ly 56.6 8.5 0.00022 18.7 2.3 31 56-87 138-169 (394)
204 PRK07232 malic enzyme; Reviewe 56.3 15 0.00039 17.1 8.1 29 215-243 457-487 (753)
205 PRK13015 3-dehydroquinate dehy 56.0 16 0.0004 17.0 4.1 66 51-123 55-125 (148)
206 PRK07582 cystathionine gamma-l 56.0 8.6 0.00022 18.6 2.2 43 64-110 134-177 (370)
207 PRK05395 3-dehydroquinate dehy 55.4 16 0.00041 17.0 5.2 66 51-123 55-125 (143)
208 PRK13547 hmuV hemin importer A 55.0 16 0.00041 16.9 5.9 25 69-93 177-201 (273)
209 PRK10535 macrolide transporter 54.8 16 0.00041 16.9 6.1 52 51-104 150-201 (648)
210 PRK08114 cystathionine beta-ly 53.5 17 0.00043 16.8 4.7 65 55-122 138-205 (395)
211 COG1042 Acyl-CoA synthetase (N 52.9 17 0.00044 16.7 4.6 73 35-111 154-249 (598)
212 cd03254 ABCC_Glucan_exporter_l 52.8 17 0.00045 16.7 6.2 12 222-233 213-224 (229)
213 PRK13652 cbiO cobalt transport 52.8 17 0.00045 16.7 5.1 21 165-185 163-183 (277)
214 PRK07050 cystathionine beta-ly 52.6 11 0.00028 18.0 2.3 50 56-110 142-192 (394)
215 PRK06767 methionine gamma-lyas 52.4 11 0.00028 17.9 2.3 50 56-110 138-188 (386)
216 COG1797 CobB Cobyrinic acid a, 52.1 18 0.00046 16.6 6.5 153 41-209 56-225 (451)
217 cd01976 Nitrogenase_MoFe_alpha 52.0 18 0.00046 16.6 4.8 109 50-159 83-208 (421)
218 PRK07812 O-acetylhomoserine am 51.8 18 0.00046 16.6 3.4 52 54-110 145-197 (436)
219 cd03291 ABCC_CFTR1 The CFTR su 51.6 18 0.00047 16.6 7.2 16 220-235 232-247 (282)
220 PRK05613 O-acetylhomoserine am 51.3 12 0.00031 17.7 2.3 52 54-110 145-197 (437)
221 PRK08248 O-acetylhomoserine am 50.7 9.5 0.00024 18.4 1.7 43 64-110 148-191 (431)
222 PRK09700 D-allose transporter 50.6 19 0.00048 16.5 5.9 74 50-129 150-224 (510)
223 cd00614 CGS_like CGS_like: Cys 50.6 11 0.00027 18.1 1.9 63 55-122 116-181 (369)
224 PRK12862 malic enzyme; Reviewe 50.6 19 0.00048 16.5 8.2 80 35-124 218-313 (761)
225 PRK05994 O-acetylhomoserine am 50.2 14 0.00036 17.3 2.5 51 55-110 139-190 (426)
226 PRK07504 O-succinylhomoserine 50.2 9.8 0.00025 18.3 1.7 15 141-155 121-135 (397)
227 PRK09536 btuD corrinoid ABC tr 50.2 19 0.00049 16.4 6.2 72 50-128 143-215 (409)
228 PRK09935 transcriptional regul 50.1 19 0.00049 16.4 9.6 148 43-207 31-184 (210)
229 PRK11288 araG L-arabinose tran 49.7 20 0.0005 16.4 5.4 76 49-130 144-220 (501)
230 PRK07671 cystathionine beta-ly 49.6 13 0.00033 17.5 2.3 62 55-122 125-190 (377)
231 PRK11264 putative amino-acid A 49.5 20 0.0005 16.4 4.8 12 141-152 123-134 (248)
232 PRK05670 anthranilate synthase 49.2 20 0.00051 16.3 3.7 39 65-106 43-82 (192)
233 PRK03695 vitamin B12-transport 48.9 20 0.00051 16.3 5.6 21 165-185 156-176 (245)
234 PRK08064 cystathionine beta-ly 48.6 8.9 0.00023 18.5 1.3 50 56-110 130-180 (390)
235 pfam01053 Cys_Met_Meta_PP Cys/ 48.6 14 0.00035 17.4 2.3 52 54-110 127-179 (381)
236 PRK07503 methionine gamma-lyas 48.1 11 0.00028 17.9 1.7 50 56-110 142-192 (403)
237 COG0855 Ppk Polyphosphate kina 48.1 21 0.00053 16.2 5.4 54 49-106 353-407 (696)
238 TIGR02886 spore_II_AA anti-sig 48.1 21 0.00053 16.2 5.0 46 35-80 6-59 (106)
239 PRK08861 cystathionine gamma-s 48.0 15 0.00039 17.1 2.4 63 55-122 129-194 (388)
240 PRK13642 cbiO cobalt transport 47.5 21 0.00054 16.2 5.2 22 165-186 166-187 (277)
241 PRK06445 acetyl-CoA acetyltran 46.8 22 0.00055 16.1 3.6 69 65-134 53-122 (394)
242 cd03214 ABC_Iron-Siderophores_ 46.8 22 0.00055 16.1 5.4 39 53-93 105-143 (180)
243 pfam01591 6PF2K 6-phosphofruct 46.5 22 0.00056 16.1 6.0 72 96-190 11-93 (223)
244 cd03215 ABC_Carb_Monos_II This 46.4 22 0.00056 16.1 5.9 14 165-178 130-143 (182)
245 cd07041 STAS_RsbR_RsbS_like Su 46.4 22 0.00056 16.1 7.7 59 36-94 9-70 (109)
246 PRK10403 transcriptional regul 45.9 22 0.00057 16.0 7.8 150 43-207 34-188 (215)
247 cd03236 ABC_RNaseL_inhibitor_d 45.9 22 0.00057 16.0 6.0 22 164-185 164-185 (255)
248 pfam06263 consensus 45.8 22 0.00057 16.0 5.8 50 52-105 237-286 (514)
249 cd03232 ABC_PDR_domain2 The pl 45.8 22 0.00057 16.0 6.4 20 165-184 134-153 (192)
250 TIGR00329 gcp metalloendopepti 45.3 23 0.00058 16.0 6.3 65 51-120 55-126 (337)
251 PRK07661 acetyl-CoA acetyltran 44.8 23 0.00059 15.9 3.5 145 53-225 29-179 (384)
252 PRK00286 xseA exodeoxyribonucl 44.8 23 0.00059 15.9 8.4 72 51-128 179-255 (443)
253 TIGR01788 Glu-decarb-GAD gluta 44.6 23 0.0006 15.9 3.3 61 49-114 191-256 (493)
254 PRK02991 D-serine dehydratase; 44.1 24 0.00061 15.8 4.7 47 46-92 79-128 (443)
255 PRK05967 cystathionine beta-ly 44.0 17 0.00042 16.8 2.1 63 55-122 140-205 (392)
256 PRK13525 glutamine amidotransf 43.9 24 0.00061 15.8 4.6 63 37-106 3-82 (191)
257 PRK06176 cystathionine gamma-s 43.7 14 0.00037 17.2 1.7 64 54-122 124-190 (379)
258 COG0075 Serine-pyruvate aminot 43.7 24 0.00062 15.8 5.4 72 48-126 117-199 (383)
259 PRK05968 hypothetical protein; 43.2 18 0.00046 16.6 2.2 42 65-110 147-189 (389)
260 COG4799 Acetyl-CoA carboxylase 42.9 25 0.00064 15.7 5.1 74 51-126 113-193 (526)
261 cd03217 ABC_FeS_Assembly ABC-t 42.8 25 0.00064 15.7 6.2 48 54-103 113-160 (200)
262 TIGR02915 PEP_resp_reg putativ 42.8 25 0.00064 15.7 4.3 56 41-102 139-199 (451)
263 PRK09653 eutD phosphotransacet 42.6 25 0.00064 15.7 7.9 12 224-235 232-243 (324)
264 TIGR01283 nifE nitrogenase MoF 42.6 8.7 0.00022 18.6 0.5 110 50-160 111-245 (470)
265 PRK01792 ribB 3,4-dihydroxy-2- 42.5 25 0.00064 15.7 3.1 158 75-253 7-176 (214)
266 TIGR00587 nfo apurinic endonuc 42.5 25 0.00064 15.7 3.4 68 51-119 151-225 (318)
267 PRK06774 para-aminobenzoate sy 42.0 26 0.00065 15.6 3.5 39 65-106 43-82 (191)
268 PRK07801 acetyl-CoA acetyltran 42.0 26 0.00066 15.6 3.4 152 53-225 34-196 (382)
269 cd03466 Nitrogenase_NifN_2 Nit 42.0 26 0.00066 15.6 4.5 105 49-155 68-187 (429)
270 KOG1683 consensus 41.9 26 0.00066 15.6 6.2 46 189-235 200-247 (380)
271 TIGR00651 pta phosphate acetyl 41.8 26 0.00066 15.6 3.6 10 84-93 117-126 (322)
272 cd06447 D-Ser-dehyd D-Serine d 41.6 26 0.00066 15.6 3.8 49 44-92 52-103 (404)
273 PRK08133 O-succinylhomoserine 41.5 22 0.00056 16.0 2.4 50 55-109 137-187 (391)
274 PRK05632 phosphate acetyltrans 41.2 26 0.00067 15.6 11.4 35 193-227 462-496 (702)
275 cd07062 Peptidase_S66_mccF_lik 40.9 27 0.00068 15.5 5.8 54 50-108 51-107 (308)
276 TIGR01431 adm_rel adenosine de 40.5 23 0.00058 15.9 2.4 23 170-192 462-484 (486)
277 cd03269 ABC_putative_ATPase Th 40.2 27 0.0007 15.5 6.4 11 51-61 40-50 (210)
278 PRK08134 O-acetylhomoserine am 40.1 23 0.0006 15.9 2.4 61 55-121 140-204 (433)
279 COG0143 MetG Methionyl-tRNA sy 40.0 28 0.0007 15.4 6.4 51 141-195 344-398 (558)
280 PRK06434 cystathionine gamma-l 39.9 24 0.0006 15.9 2.4 15 141-155 120-134 (384)
281 PRK06895 para-aminobenzoate sy 39.6 28 0.00071 15.4 3.0 39 65-106 44-83 (191)
282 PRK05939 hypothetical protein; 39.1 20 0.0005 16.4 1.8 62 55-121 121-185 (396)
283 cd03213 ABCG_EPDR ABCG transpo 38.8 29 0.00073 15.3 6.5 23 163-185 135-157 (194)
284 PRK08041 consensus 38.5 29 0.00074 15.3 2.8 152 55-226 36-197 (391)
285 PRK09522 bifunctional anthrani 38.3 29 0.00075 15.3 7.2 180 52-238 39-263 (531)
286 COG0659 SUL1 Sulfate permease 38.1 30 0.00075 15.3 8.8 63 37-100 444-509 (554)
287 COG0757 AroQ 3-dehydroquinate 37.7 30 0.00076 15.2 5.4 84 51-145 54-142 (146)
288 PTZ00107 hexokinase; Provision 37.7 30 0.00076 15.2 3.2 103 67-178 193-310 (485)
289 COG1512 Beta-propeller domains 37.5 30 0.00077 15.2 8.1 55 27-81 23-79 (271)
290 PRK10360 DNA-binding transcrip 37.2 30 0.00078 15.2 9.3 138 41-207 27-172 (196)
291 PRK06702 O-acetylhomoserine am 37.1 29 0.00074 15.3 2.5 63 54-122 137-203 (432)
292 PRK10744 phosphate transporter 36.7 31 0.00079 15.1 5.8 10 51-60 50-59 (257)
293 cd03218 ABC_YhbG The ABC trans 36.6 31 0.00079 15.1 6.0 18 165-182 159-176 (232)
294 TIGR02109 PQQ_syn_pqqE coenzym 36.5 22 0.00057 16.0 1.8 53 49-110 38-90 (363)
295 cd03238 ABC_UvrA The excision 36.1 32 0.00081 15.1 6.7 73 50-127 92-165 (176)
296 cd00617 Tnase_like Tryptophana 36.1 32 0.00081 15.1 4.1 62 51-114 139-203 (431)
297 PRK13549 xylose transporter AT 36.0 32 0.00081 15.1 6.2 74 50-129 148-222 (513)
298 cd00751 thiolase Thiolase are 35.8 32 0.00082 15.0 3.4 78 53-134 30-111 (386)
299 PRK08170 acetyl-CoA acetyltran 35.8 28 0.00071 15.4 2.2 170 53-228 35-219 (426)
300 PRK06091 membrane protein FdrA 35.7 32 0.00082 15.0 5.6 50 52-105 239-288 (555)
301 TIGR00519 asnASE_I L-asparagin 35.7 32 0.00082 15.0 6.0 53 57-110 235-287 (347)
302 pfam00763 THF_DHG_CYH Tetrahyd 35.7 32 0.00082 15.0 4.3 28 51-78 73-100 (117)
303 PRK13606 LPPG:FO 2-phospho-L-l 35.6 29 0.00074 15.3 2.3 56 116-180 185-243 (309)
304 TIGR01383 not_thiJ DJ-1 family 35.3 33 0.00083 15.0 4.1 65 38-110 33-109 (186)
305 PRK10895 putative ABC transpor 35.3 33 0.00083 15.0 6.3 17 165-181 163-179 (241)
306 COG1071 AcoA Pyruvate/2-oxoglu 35.3 33 0.00083 15.0 7.0 140 40-185 131-290 (358)
307 COG0512 PabA Anthranilate/para 35.2 29 0.00074 15.3 2.2 40 65-107 45-85 (191)
308 PRK11614 livF leucine/isoleuci 34.9 33 0.00085 14.9 6.3 11 166-176 164-174 (237)
309 PRK13546 teichoic acids export 34.7 33 0.00085 14.9 7.2 17 77-93 173-189 (264)
310 COG1618 Predicted nucleotide k 34.7 33 0.00085 14.9 4.5 49 53-105 90-139 (179)
311 PRK06460 hypothetical protein; 34.6 24 0.0006 15.9 1.7 52 54-110 120-172 (375)
312 PRK06084 O-acetylhomoserine am 34.4 30 0.00077 15.2 2.2 51 55-110 134-185 (424)
313 pfam00108 Thiolase_N Thiolase, 34.3 34 0.00086 14.9 2.7 154 55-226 36-197 (264)
314 TIGR01502 B_methylAsp_ase meth 34.1 34 0.00087 14.9 5.0 55 68-126 327-390 (414)
315 PRK07649 para-aminobenzoate/an 34.0 34 0.00087 14.8 2.8 39 65-106 43-82 (195)
316 cd04254 AAK_UMPK-PyrH-Ec UMP k 33.8 34 0.00088 14.8 8.1 97 67-166 1-107 (231)
317 cd03289 ABCC_CFTR2 The CFTR su 33.5 35 0.00089 14.8 5.2 16 165-180 164-179 (275)
318 PRK13238 tnaA tryptophanase; P 33.0 36 0.00091 14.8 4.9 120 51-179 164-307 (461)
319 COG5206 GPI8 Glycosylphosphati 32.7 36 0.00092 14.7 5.3 89 66-154 138-250 (382)
320 PRK10792 bifunctional 5,10-met 32.4 36 0.00093 14.7 4.2 98 49-167 75-175 (288)
321 PRK02628 nadE NAD synthetase; 32.3 37 0.00093 14.7 2.4 68 97-167 363-445 (678)
322 PRK08045 cystathionine gamma-s 32.3 30 0.00076 15.2 1.9 63 55-122 128-193 (386)
323 PRK11096 ansB L-asparaginase I 32.3 37 0.00093 14.7 5.5 65 29-93 16-97 (347)
324 TIGR02922 TIGR02922 conserved 31.8 22 0.00055 16.1 1.1 28 91-122 41-68 (69)
325 PRK01059 ATP:guanido phosphotr 31.5 38 0.00096 14.6 6.0 92 75-174 127-232 (351)
326 TIGR00838 argH argininosuccina 31.5 38 0.00096 14.6 2.7 95 169-265 282-386 (469)
327 pfam01990 ATP-synt_F ATP synth 31.4 38 0.00096 14.6 6.6 54 49-109 25-78 (92)
328 PRK10762 D-ribose transporter 31.2 38 0.00097 14.6 5.9 73 50-128 146-219 (501)
329 KOG1349 consensus 31.2 38 0.00097 14.6 3.5 68 62-130 135-213 (309)
330 PRK01077 cobyrinic acid a,c-di 31.1 38 0.00097 14.6 6.9 65 35-104 115-179 (451)
331 TIGR02035 D_Ser_am_lyase D-ser 30.9 39 0.00098 14.5 2.4 123 49-198 75-217 (431)
332 PRK08776 cystathionine gamma-s 30.8 39 0.00099 14.5 3.2 61 56-121 137-200 (405)
333 PRK09552 mtnX 2-hydroxy-3-keto 30.7 39 0.00099 14.5 2.8 17 38-54 4-20 (219)
334 KOG2245 consensus 30.5 39 0.001 14.5 3.6 27 170-196 377-403 (562)
335 cd03267 ABC_NatA_like Similar 30.0 40 0.001 14.4 5.9 18 229-246 157-174 (236)
336 PRK06025 acetyl-CoA acetyltran 29.8 40 0.001 14.4 3.3 155 55-228 39-201 (417)
337 pfam01921 tRNA-synt_1f tRNA sy 29.5 41 0.001 14.4 3.9 77 79-157 40-128 (355)
338 COG0311 PDX2 Predicted glutami 29.5 41 0.001 14.4 6.1 63 37-106 2-82 (194)
339 cd00267 ABC_ATPase ABC (ATP-bi 29.3 41 0.001 14.4 6.0 51 51-103 86-136 (157)
340 PRK10840 transcriptional regul 29.1 41 0.0011 14.3 11.4 146 41-207 29-185 (216)
341 pfam02065 Melibiase Melibiase. 29.0 42 0.0011 14.3 9.3 85 39-126 158-257 (395)
342 PRK08247 cystathionine gamma-s 29.0 30 0.00077 15.2 1.4 51 55-110 127-178 (366)
343 cd00981 arch_gltB Archaeal-typ 28.9 42 0.0011 14.3 3.3 25 168-192 192-216 (232)
344 PRK11124 artP arginine transpo 28.5 42 0.0011 14.3 5.6 17 165-181 167-183 (242)
345 cd04912 ACT_AKiii-LysC-EC-like 28.5 42 0.0011 14.3 3.2 59 124-185 7-65 (75)
346 TIGR01325 O_suc_HS_sulf O-succ 28.4 13 0.00032 17.6 -0.6 49 114-168 89-140 (386)
347 PRK08007 para-aminobenzoate sy 28.2 43 0.0011 14.2 3.3 39 65-106 43-82 (187)
348 TIGR03608 L_ocin_972_ABC putat 28.0 43 0.0011 14.2 6.3 25 222-246 130-155 (206)
349 cd03225 ABC_cobalt_CbiO_domain 27.9 43 0.0011 14.2 6.3 18 228-245 137-154 (211)
350 PRK10982 galactose/methyl gala 27.9 43 0.0011 14.2 6.0 73 50-128 139-212 (491)
351 KOG1532 consensus 27.9 43 0.0011 14.2 2.2 52 51-109 103-160 (366)
352 PRK04346 tryptophan synthase s 27.7 22 0.00056 16.1 0.6 89 68-159 76-167 (392)
353 PRK03353 ribB 3,4-dihydroxy-2- 27.4 44 0.0011 14.2 2.8 151 84-252 14-175 (217)
354 cd01743 GATase1_Anthranilate_S 27.1 45 0.0011 14.1 3.8 40 64-106 41-81 (184)
355 COG0533 QRI7 Metal-dependent p 26.8 45 0.0012 14.1 4.8 50 51-102 52-108 (342)
356 PRK09605 O-sialoglycoprotein e 26.6 46 0.0012 14.1 4.2 17 84-101 90-106 (536)
357 cd03230 ABC_DR_subfamily_A Thi 26.3 46 0.0012 14.0 6.2 23 163-185 119-141 (173)
358 PRK08857 para-aminobenzoate sy 26.1 47 0.0012 14.0 3.1 39 65-106 43-82 (192)
359 cd03130 GATase1_CobB Type 1 gl 25.9 47 0.0012 14.0 6.0 53 51-107 14-86 (198)
360 PRK13237 tyrosine phenol-lyase 25.9 47 0.0012 14.0 4.5 94 51-148 164-281 (459)
361 COG2873 MET17 O-acetylhomoseri 25.7 30 0.00077 15.2 1.0 74 54-133 137-214 (426)
362 cd05565 PTS_IIB_lactose PTS_II 25.7 48 0.0012 14.0 3.5 79 71-161 4-84 (99)
363 PRK09051 beta-ketothiolase; Pr 25.6 46 0.0012 14.0 1.9 157 55-228 37-201 (394)
364 TIGR01817 nifA Nif-specific re 25.3 48 0.0012 13.9 2.7 84 41-135 209-298 (574)
365 COG2179 Predicted hydrolase of 24.8 49 0.0013 13.8 2.9 83 62-155 24-113 (175)
366 cd03136 GATase1_AraC_ArgR_like 24.7 48 0.0012 13.9 1.8 50 64-118 63-112 (185)
367 PRK10771 thiQ thiamine transpo 24.6 50 0.0013 13.8 4.9 10 166-175 156-165 (233)
368 TIGR03191 benz_CoA_bzdO benzoy 24.4 50 0.0013 13.8 5.6 41 53-93 124-171 (430)
369 TIGR03249 KdgD 5-dehydro-4-deo 24.3 50 0.0013 13.8 3.1 104 49-156 24-137 (296)
370 TIGR00398 metG methionyl-tRNA 23.8 51 0.0013 13.7 6.6 96 76-188 14-112 (573)
371 PRK11247 ssuB aliphatic sulfon 23.8 52 0.0013 13.7 6.1 21 165-185 159-179 (257)
372 PRK13656 trans-2-enoyl-CoA red 23.7 52 0.0013 13.7 4.6 17 64-80 5-21 (400)
373 PRK01060 endonuclease IV; Prov 23.7 52 0.0013 13.7 4.8 59 51-110 89-151 (281)
374 cd03257 ABC_NikE_OppD_transpor 23.7 52 0.0013 13.7 5.0 18 228-245 148-165 (228)
375 pfam02978 SRP_SPB Signal pepti 23.7 41 0.0011 14.3 1.4 74 129-209 17-91 (100)
376 pfam06415 iPGM_N BPG-independe 23.6 52 0.0013 13.7 2.2 61 45-106 8-72 (223)
377 TIGR01415 trpB_rel pyridoxal-p 23.5 52 0.0013 13.7 2.1 107 54-181 75-191 (426)
378 PRK00133 metG methionyl-tRNA s 23.4 52 0.0013 13.7 6.2 50 141-194 338-392 (666)
379 TIGR01136 cysKM cysteine synth 23.3 53 0.0013 13.7 4.2 25 218-242 239-265 (315)
380 pfam09558 DUF2375 Protein of u 23.2 43 0.0011 14.2 1.4 30 91-124 41-70 (71)
381 cd03263 ABC_subfamily_A The AB 23.2 53 0.0014 13.7 6.2 10 166-175 160-169 (220)
382 PRK06690 acetyl-CoA acetyltran 22.9 54 0.0014 13.6 3.2 138 54-230 33-178 (361)
383 cd03246 ABCC_Protease_Secretio 22.9 54 0.0014 13.6 6.4 66 51-123 102-167 (173)
384 PRK05562 precorrin-2 dehydroge 22.5 55 0.0014 13.6 3.4 48 150-198 124-174 (222)
385 cd03260 ABC_PstB_phosphate_tra 22.2 55 0.0014 13.5 5.7 10 235-244 151-160 (227)
386 cd03759 proteasome_beta_type_3 22.0 41 0.001 14.4 1.1 16 43-58 48-63 (195)
387 cd03222 ABC_RNaseL_inhibitor T 21.8 56 0.0014 13.5 5.9 70 50-125 76-146 (177)
388 PRK09984 phosphonate/organopho 21.8 56 0.0014 13.5 5.6 19 50-68 43-62 (262)
389 COG2240 PdxK Pyridoxal/pyridox 21.7 57 0.0014 13.5 5.8 74 44-120 49-127 (281)
390 PRK11300 livG leucine/isoleuci 21.4 58 0.0015 13.4 5.9 21 165-185 179-199 (255)
391 TIGR00538 hemN oxygen-independ 21.3 58 0.0015 13.4 4.7 141 84-232 34-191 (462)
392 TIGR03333 salvage_mtnX 2-hydro 21.3 58 0.0015 13.4 2.8 14 41-54 4-17 (214)
393 TIGR01819 F420_cofD LPPG:Fo 2- 21.3 48 0.0012 13.9 1.3 57 99-155 213-272 (359)
394 cd03259 ABC_Carb_Solutes_like 21.2 58 0.0015 13.4 4.9 16 230-245 135-150 (213)
395 PRK04147 N-acetylneuraminate l 21.1 58 0.0015 13.4 3.4 60 50-109 23-86 (294)
396 PRK00014 ribB 3,4-dihydroxy-2- 21.0 59 0.0015 13.4 3.0 153 83-253 18-181 (230)
397 COG3453 Uncharacterized protei 20.8 59 0.0015 13.4 5.8 59 54-114 47-105 (130)
398 PRK13477 bifunctional pantoate 20.5 60 0.0015 13.3 4.6 187 93-283 280-505 (512)
399 PRK12331 oxaloacetate decarbox 20.4 60 0.0015 13.3 10.2 154 51-228 154-321 (463)
400 cd01977 Nitrogenase_VFe_alpha 20.4 60 0.0015 13.3 4.1 106 50-157 72-196 (415)
401 PRK09544 znuC high-affinity zi 20.1 61 0.0016 13.3 6.0 26 69-94 142-167 (251)
402 pfam00681 Plectin Plectin repe 20.1 61 0.0016 13.3 1.7 18 210-227 19-36 (45)
403 PRK09765 2-O-a-mannosyl-D-glyc 20.0 45 0.0012 14.1 0.9 40 134-177 179-218 (638)
No 1
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=100.00 E-value=0 Score=420.79 Aligned_cols=206 Identities=34% Similarity=0.623 Sum_probs=201.0
Q ss_pred EEEEEEEEEEE--------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCCEE
Q ss_conf 28999976662--------------38699999999986189987999975888888899999999999841--478679
Q gi|254780747|r 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVI 100 (293)
Q Consensus 37 ~i~~i~i~G~I--------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k--~~kpvv 100 (293)
.||++.++|+| .+.+++.+.|+++.+|++||||+|+||||||+|.+++||+++|++++ .+|||+
T Consensus 1 ~IA~~~v~G~I~~~~~~~~~~~~Dg~~~~~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S~Eiy~~l~~~~k~~kkPVv 80 (224)
T TIGR00706 1 KIASLEVTGAIASDAALSILLFSDGVSPEDVLKKIKRIKDDKSIKALVLRIDSPGGTVVASEEIYEKLKKLKKEAKKPVV 80 (224)
T ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 93588841266303442101256899756799998877408970069998637999752268999999863453088589
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 96033233223210001110001301353455565302102456777420422553155211234666789999887777
Q gi|254780747|r 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 (293)
Q Consensus 101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~ 180 (293)
+|++++++|||||+|++||+|+|+|.|++|||||++++.++++|++|+||+.+.|++|+||+.++|+|.|+||+|+.+|+
T Consensus 81 ~~~g~~aaSGGYYia~aa~~I~A~~~t~tGSIGVIl~~~n~~~L~~k~GI~~~~iK~G~yKd~~~~~R~lt~eE~~~lQ~ 160 (224)
T TIGR00706 81 ASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLLEKLGIEFEAIKSGEYKDIGSPTRELTPEERKILQS 160 (224)
T ss_pred EEECCCCHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98368322679999813882463477420203755203579999986491565665166567898757762999999999
Q ss_pred HHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 766666778999985149--99889988734982378899877980623898999999997418
Q gi|254780747|r 181 VVDSSYHWFVRLVSESRN--IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 181 ~l~~~~~~f~~~Va~~R~--~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
++|+.|++|++.|+++|+ |+.++++++||||+|+|+||++++|||+||+.++|+++|.++.+
T Consensus 161 ~v~~~Y~~F~~~V~~~R~nkl~~~~vK~~AdGRvf~GrqA~~l~LVD~lG~~d~A~~~l~~L~g 224 (224)
T TIGR00706 161 LVNESYEQFVQVVAKGRNNKLSVEDVKKFADGRVFTGRQALKLRLVDKLGTLDDALKWLAKLAG 224 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEECHHHHHHCCCEECCCCHHHHHHHHHHHCC
T ss_conf 8888875789999984167789788765206860104334311460012898999999997449
No 2
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=0 Score=397.17 Aligned_cols=231 Identities=29% Similarity=0.448 Sum_probs=213.8
Q ss_pred CCCCCCEEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEE
Q ss_conf 5677872899997666238---------699999999986189987999975888888899999999999841-478679
Q gi|254780747|r 31 VEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVI 100 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvv 100 (293)
....+++||||.++|+|++ .+.+.+.|++|.+|++|||||||||||||++.+++.|+++|.++| ++||||
T Consensus 321 ~~~~~~~IAVI~a~G~Iv~G~~~~g~ig~dt~~~~lr~a~~D~~VKAvVLRVnSPGGSa~ASE~I~~el~~lk~~gKPVV 400 (618)
T PRK10949 321 PADTGGQIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVV 400 (618)
T ss_pred CCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 88779838999968768548887886655899999999730867228999985899866789999999999984499799
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 96033233223210001110001301353455565302102456777420422553155211234666789999887777
Q gi|254780747|r 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 (293)
Q Consensus 101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~ 180 (293)
++|+++|||||||||++||+|||+|+|++|||||.+..|+++++++|+||+.+.+++|++.+. ++++++++++++.+|.
T Consensus 401 vSMG~vAASGGYwIa~~Ad~I~A~p~TITGSIGVfg~~p~~~~~l~~lGI~~D~V~t~~~a~~-s~~~~l~~~~~~~~q~ 479 (618)
T PRK10949 401 VSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEFQQMMQL 479 (618)
T ss_pred EEECCCCCCCCEEEECCCCEEEECCCCEEEECEEEEEHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf 997010156625885168769988986788640477610499999964952468854567778-8777999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHH
Q ss_conf 76666677899998514999889988734982378899877980623898999999997418776530120144211245
Q gi|254780747|r 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 (293)
Q Consensus 181 ~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (293)
.+++.|+.|++.|+++|+|+.++++++++|++|+|++|+++||||++|++++|++.++++++..+ ..+..|+++.++..
T Consensus 480 ~i~~~Y~~Fl~~Va~gR~mt~e~Vd~iAqGRVWsG~~A~~~GLVD~LGgl~dAI~~Aa~lA~l~~-y~v~~~~~~~s~~e 558 (618)
T PRK10949 480 SIENGYKRFITLVADARHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKLKQ-WHLNWYVDEPTFFD 558 (618)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEECCCCCHHH
T ss_conf 99999999999998657999899998648837769999986893654999999999999749985-06786179999999
Q ss_pred HHH
Q ss_conf 565
Q gi|254780747|r 261 CDL 263 (293)
Q Consensus 261 ~~~ 263 (293)
..+
T Consensus 559 ~~~ 561 (618)
T PRK10949 559 MVM 561 (618)
T ss_pred HHH
T ss_conf 999
No 3
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=100.00 E-value=0 Score=381.07 Aligned_cols=201 Identities=28% Similarity=0.404 Sum_probs=193.9
Q ss_pred EEEEEEEEEEEC-------------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 289999766623-------------8699999999986189987999975888888899999999999841478679960
Q gi|254780747|r 37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 37 ~i~~i~i~G~I~-------------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
.||+|+++|+|. +.+.+++.|++|.+|++||+|+|+||||||++.++++|+++|++++++|||++|+
T Consensus 1 giAvI~i~G~i~~~~~~~~~~~g~~~~~~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~~KPVva~~ 80 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV 80 (214)
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 97999989899369876555777558999999999995099975899999798976899999999999860899899998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 33233223210001110001301353455565302102456777420422553155211234666789999887777766
Q gi|254780747|r 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 (293)
Q Consensus 104 ~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~ 183 (293)
++.|+|||||+||+||+|||+|+|++|||||++.+++++++++|+||+++++++|+||++++||+++++++|+.+|.+++
T Consensus 81 ~~~~aSggY~iAsaad~I~a~~~s~vGSIGv~~~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~~~~s~e~~~~~q~~ld 160 (214)
T cd07022 81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVD 160 (214)
T ss_pred CCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88115689999872570587776468764148861776888986795478740576332368756568899999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 6667789999851499988998873498237889987798062389899999999
Q gi|254780747|r 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 184 ~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
++|++|++.|+++|+++.+.++.. .|++|+|+||+++||||+||++++|++++.
T Consensus 161 ~~~~~F~~~Va~~R~~~~~~~~~~-~G~v~~g~~A~~~GLVD~iG~~~dai~~la 214 (214)
T cd07022 161 ALYAMFVAAVARNRGLSAAAVRAT-EGGVFRGQEAVAAGLADAVGTLDDALAALA 214 (214)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHH-CCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 999999999998579997788871-698988999998599754699999999749
No 4
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=378.69 Aligned_cols=235 Identities=29% Similarity=0.491 Sum_probs=215.9
Q ss_pred CCCCCEEEEEEEEEEECC----------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C-CCE
Q ss_conf 677872899997666238----------6999999999861899879999758888888999999999998414-7-867
Q gi|254780747|r 32 EDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-R-KPV 99 (293)
Q Consensus 32 ~~~~~~i~~i~i~G~I~~----------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~-kpv 99 (293)
.+..|+|++|.++|+|++ .+++.+.|+.|..||+|||||||||||||++++++.|++++..+|+ + |||
T Consensus 316 ~~~~~~iaiv~~~G~I~~G~~t~~nG~ggD~~a~lLr~a~~D~~iKAvvLRinSPGGsv~Ase~IR~e~~~~~~~GkKPV 395 (614)
T TIGR00705 316 YDVDDKIAIVYLEGSIVDGRDTEENGVGGDTVAALLRKARSDPDIKAVVLRINSPGGSVFASEIIRRELERLQARGKKPV 395 (614)
T ss_pred CCCCCCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCE
T ss_conf 27988169997006423577566786003679999998707998128998863898634287899999999982689978
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 996033233223210001110001301353455565302102456777-4204225531552112346667899998877
Q gi|254780747|r 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 (293)
Q Consensus 100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k-~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~ 178 (293)
|++|+.+||||||||||+||+|+|+|+|++||||+....|.|+.++|+ +||+.+.+.+++..+.+|.+++.++++...+
T Consensus 396 ivSMG~~AASGgYWiasaA~yIvA~p~TiTGSIGvfsvl~t~En~~~~y~Gv~~D~V~t~~la~~GS~~~~~t~~~~~~~ 475 (614)
T TIGR00705 396 IVSMGAMAASGGYWIASAADYIVADPNTITGSIGVFSVLPTVENSLDRYIGVHVDGVSTSELANVGSLLRPLTEEEQAIM 475 (614)
T ss_pred EEECCHHHHCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCEECEEECCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 98435023205300204557133478743100144532522554231000223163342464463223477884788886
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-----CCCCEEECC
Q ss_conf 777666667789999851499988998873498237889987798062389899999999741877-----653012014
Q gi|254780747|r 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-----SIRKIKDWN 253 (293)
Q Consensus 179 ~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~-----~~~~~~~~~ 253 (293)
|.-++..|+.|++.|+++|++++++++++++|++|+|+.|+++||||+||++++|++.+.+++... ..-.++.|+
T Consensus 476 Q~~v~~~Y~~FL~~Vs~aR~ls~~~vd~vAqG~vw~G~dA~~~GLVD~LG~l~~AVa~Aa~~~~~rqdtaV~q~~v~~y~ 555 (614)
T TIGR00705 476 QLSVEAGYERFLEVVSKARNLSPTQVDKVAQGRVWTGEDAVKNGLVDELGGLDEAVAKAAKLAELRQDTAVKQWSVEVYK 555 (614)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf 33088899999999862303888899877568400015676638620268877899999999744776530111777860
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 4211245565110
Q gi|254780747|r 254 PPKNYWFCDLKNL 266 (293)
Q Consensus 254 ~~~~~~~~~~~~~ 266 (293)
..+..+.+.+...
T Consensus 556 ~~~~s~~~~ll~~ 568 (614)
T TIGR00705 556 DEATSLISELLDN 568 (614)
T ss_pred CCCCHHHHHHHHH
T ss_conf 7863058889988
No 5
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=100.00 E-value=0 Score=376.81 Aligned_cols=201 Identities=38% Similarity=0.669 Sum_probs=196.1
Q ss_pred EEEEEEEEEEEC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCC
Q ss_conf 289999766623-----86999999999861899879999758888888999999999998414-786799603323322
Q gi|254780747|r 37 HVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110 (293)
Q Consensus 37 ~i~~i~i~G~I~-----~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~ 110 (293)
+|++|+++|+|. +.+++++.|++|.+|++||+|+|+||||||+++++++|+++|++||+ +|||++|++++|+||
T Consensus 1 ~iavi~~~G~i~~~~~~~~~~i~~~l~~A~~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~~~KpV~a~~~~~aaSg 80 (208)
T cd07023 1 KIAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASG 80 (208)
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCH
T ss_conf 97999988788899986999999999999508997489999748996299999999999987514985999977711133
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 32100011100013013534555653021024567774204225531552112346667899998877777666667789
Q gi|254780747|r 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 (293)
Q Consensus 111 ~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~ 190 (293)
|||+||+||+|||+|+|++|||||++++++++++++|+||+++++++|+||++++||++||+++++++|.+++++|++|+
T Consensus 81 ~Y~lAs~ad~I~a~p~s~vGSIGv~~~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~~~~s~e~~~~~~~~ld~~~~~F~ 160 (208)
T cd07023 81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHHHHCCCEEEECCCCEECCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45655128779977876333200366326889999976970699952562334577778999999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 99985149998899887349823788998779806238989999999
Q gi|254780747|r 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 (293)
Q Consensus 191 ~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l 237 (293)
+.|+++|+++.++++++++|++|+|+||+++||||+||+++++++++
T Consensus 161 ~~Va~~R~~~~~~v~~~~~g~v~~~~~A~~~GLiD~ig~~~eai~~~ 207 (208)
T cd07023 161 DVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208)
T ss_pred HHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99998669998999998579867099999869975339999999975
No 6
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=100.00 E-value=0 Score=369.84 Aligned_cols=201 Identities=30% Similarity=0.477 Sum_probs=192.8
Q ss_pred EEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC
Q ss_conf 2899997666238---------6999999999861899879999758888888999999999998414-78679960332
Q gi|254780747|r 37 HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106 (293)
Q Consensus 37 ~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~ 106 (293)
.|++|+++|+|++ .+++.+.|++|.+|++||||+|+||||||++.++++|+++|+++|+ +|||++|+++.
T Consensus 1 ~iaVi~~~G~I~~~~~~~~~~~~~~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~~~~~~~KPVva~~~~~ 80 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGA 80 (211)
T ss_pred CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98999988788379887887589999999999952899738999976969768999999999999864699799997784
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 33223210001110001301353455565302102456777420422553155211234666789999887777766666
Q gi|254780747|r 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 (293)
Q Consensus 107 ~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~ 186 (293)
|+|||||+||+||+|||+|++++|||||++.+++++++++|+||+++.++++++|+ .++++++|+++|+.+|.+++++|
T Consensus 81 aaSggY~iAsaad~I~a~p~s~vGSIGV~~~~~~~~~~~~k~Gi~~~~i~~~~~~~-~~~~~~lt~e~r~~~q~~vd~~~ 159 (211)
T cd07019 81 AASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD-VSITRALPPEAQLGLQLSIENGY 159 (211)
T ss_pred CCHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCHHHHHHHCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 43488999855898998488735655689983376777774683578997456666-78889999999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 7789999851499988998873498237889987798062389899999999
Q gi|254780747|r 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 187 ~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
++|++.|+++|+++.+.++++++|++|+|++|+++||||+||++++|++++.
T Consensus 160 ~~F~~~Va~~R~~~~~~v~~~a~G~v~~g~~A~~~GLiD~ig~~~~ai~~aa 211 (211)
T cd07019 160 KRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAA 211 (211)
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 9999999976799957837546855787899998699655699999999759
No 7
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=359.47 Aligned_cols=212 Identities=33% Similarity=0.553 Sum_probs=203.1
Q ss_pred CCEEEEEEEEEEEC---------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 87289999766623---------869999999998618998799997588888889999999999984147867996033
Q gi|254780747|r 35 SPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 35 ~~~i~~i~i~G~I~---------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
.++|++|+++|.|. +.+++.+.|+++..|+++|+|+|+||||||++.++++|+++|++++++|||++++++
T Consensus 58 ~~~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~ 137 (317)
T COG0616 58 SKVIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGG 137 (317)
T ss_pred CCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 85699997454653487763446677799999998508998738999989498468999999999987532989999887
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
+|+||||||||+||+|||+|+|++|||||+++.+++.++++|+||+.+.+++|+||+.++||+++++++++.+|.++++.
T Consensus 138 ~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 138 YAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred CCCCHHHHHHHCCCEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 32028999984078798779860213501774566899998659860344232421114533336989999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 6778999985149998899887349823788998779806238989999999974187765
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~ 246 (293)
|+.|++.|+++|++..+.+..+++|++|+|++|+++||||++|++++++.++.+..+....
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~~~ 278 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDV 278 (317)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHCCCEECHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999972679970156787357686466624244427646788999999874366655
No 8
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=100.00 E-value=0 Score=352.07 Aligned_cols=190 Identities=24% Similarity=0.360 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86999999999861899879999758888888999999999998414-78679960332332232100011100013013
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s 127 (293)
+.+++++.|++|++|++||||+|++|||||+++++++|+++|++||+ +||||+|.+ .++|++||+||+||+|||+|++
T Consensus 30 ~l~~l~~~l~~A~~D~~ik~vvL~i~s~gg~~~~~~ei~~ai~~~k~~gKpVva~~~-~~~s~~Y~lAs~ad~I~a~p~~ 108 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYAD-GYSQGQYYLASAADEIYLNPSG 108 (222)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC-CCCCHHHHHHHHCCEEEECCCC
T ss_conf 599999999998339996389996689997699999999999999860993999952-5661665887527855776887
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 5345556530210245677742042255315521123466--67899998877777666667789999851499988998
Q gi|254780747|r 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 (293)
Q Consensus 128 ~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~ 205 (293)
.+|++|+.++.++++++++|+||+++++++|+||++++|| ++||+++|++++++++++|++|++.|+++|+++.+.++
T Consensus 109 ~vg~iGv~~~~~~~k~ll~klGi~~~~~~~G~yK~a~epf~~~~~s~e~re~~~~~l~~~~~~f~~~Va~~R~~~~~~~~ 188 (222)
T cd07018 109 SVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALE 188 (222)
T ss_pred EEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 68776437542127889998698069984245466768655566589999999999999999999999964799989999
Q ss_pred HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8734982378899877980623898999999997
Q gi|254780747|r 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 (293)
Q Consensus 206 ~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~ 239 (293)
++++|++|+|++|+++||||+||+++|+++++++
T Consensus 189 ~~~~~~~~~~~~A~~~GLVD~lg~~de~~~~l~~ 222 (222)
T cd07018 189 ALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE 222 (222)
T ss_pred HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf 9984798729999986997507989999998509
No 9
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=0 Score=318.55 Aligned_cols=240 Identities=19% Similarity=0.245 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCEEEEEEEEEEECCH---------------------------HHH
Q ss_conf 58999999999999999999997--0565556778728999976662386---------------------------999
Q gi|254780747|r 3 FVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDS---------------------------QEL 53 (293)
Q Consensus 3 ~~~~~i~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~i~~i~i~G~I~~~---------------------------~~l 53 (293)
|.-+.|.+.|++++++.++.+++ ........++..+++++++|+|+++ .++
T Consensus 21 ~~R~~i~nl~f~~~i~~~v~~~~~~~~~~~~~~~~~~aL~ldl~G~lvdq~~~~~p~~~l~~~~~g~~~~~~~e~~L~Di 100 (618)
T PRK10949 21 FVREMVLNLFFIFLILVGVGIWMQVSNGDSPETASRGALLLDISGVIVDKPSSNNKLRQLGRQLLGASSDRLQENSLFDI 100 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 99999999999999999999987404788855687857998488607616888885999999851788775441029999
Q ss_pred HHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999998618998799997588-8888899999999999841-4786799603323322321000111000130135345
Q gi|254780747|r 54 IERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs 131 (293)
++.|++|++|++|+||+|+++. .|++.+..++|++||.+|| ++|||+||.+.+ ..++||+||+||+||++|.+.+..
T Consensus 101 v~aI~~Aa~D~rI~givLdl~~~~g~~~a~l~eI~~AL~~FK~SGK~ViAy~d~y-sq~~YyLAS~AD~I~L~P~G~v~l 179 (618)
T PRK10949 101 VNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDNY-SQGQYYLASFANKIWLSPQGVVDL 179 (618)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCC-CCCCEEEEEECCEEEECCCCEEEE
T ss_conf 9999985149982599997777888788999999999999998199399996677-853010211077789889966878
Q ss_pred HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----H
Q ss_conf 556530210245677742042255315521123466--6789999887777766666778999985149998899----8
Q gi|254780747|r 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----L 205 (293)
Q Consensus 132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~----~ 205 (293)
.|+..+.+|||++|||+||+++++++|+||+++||| .+||+++|++.+.+++++|++|++.|+++|+++.+++ +
T Consensus 180 ~Gl~~~~~y~K~lLdKlgI~~~vfrvG~YKSAvEpf~r~~MS~e~re~~~~~l~~lw~~~~~~Ia~~R~l~~~~l~~~~~ 259 (618)
T PRK10949 180 HGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQ 259 (618)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 66301177899999974982899981375674651114459999999999999999999999999865999789777799
Q ss_pred HHHC----CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8734----9823788998779806238989999999974187
Q gi|254780747|r 206 VLSD----GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 (293)
Q Consensus 206 ~~~~----g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~ 243 (293)
.+.+ -...+++.|++.||||++++.+++.+++.+..+.
T Consensus 260 ~~~~~l~~~~g~~a~~Al~~gLVD~l~~~~e~~~~l~~~~g~ 301 (618)
T PRK10949 260 GILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKAFGW 301 (618)
T ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 999999870884099998769985467688999999998488
No 10
>PRK11778 putative periplasmic protease; Provisional
Probab=100.00 E-value=0 Score=313.01 Aligned_cols=236 Identities=21% Similarity=0.345 Sum_probs=195.0
Q ss_pred CCCCEEEEEEEEEEECCH--H----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf 778728999976662386--9----99999999861899879999758888888999999999998414-7867996033
Q gi|254780747|r 33 DNSPHVARIAIRGQIEDS--Q----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHE 105 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~~~--~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~ 105 (293)
...|.+.|++.+|-|.-+ + ++..-|..|..+ ..|+|+++||||.+.+..-.+..|.++|. +.|++++++.
T Consensus 66 ~~~~r~fvldF~Gdi~As~v~~LReeitaiL~~a~~~---DeV~~rles~GG~v~~yglaasql~rlr~~~i~ltv~vd~ 142 (317)
T PRK11778 66 LGKPRVFVLDFKGDIDASEVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVCVDK 142 (317)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 5786399995468603776777899999999748789---8699999789956660577999999998679928999701
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
.|||||||+||+||+|||+|++++|||||+++.|+|.++|+|+||+++.+++|+||+.++||.++|+++|+.++..++++
T Consensus 143 VAASGGY~mAc~ADkIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~ 222 (317)
T PRK11778 143 VAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEET 222 (317)
T ss_pred EECCCCEEEEECCCEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 30243022652188799878634653210166658899999859965998145677777888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 67789999851499988998873498237889987798062389899999999741877653012014421124556511
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (293)
|++|++.|+++|+. .+++++++|++|+|++|+++||||+|||.|+++..+.+.... ..+ .|.++++ +... ..
T Consensus 223 h~~Fk~~Va~~Rp~--~did~VAtGrvW~G~qAlelGLVDeIgTsDd~l~~~~~~~~v---~~v-~~~~kk~-l~~r-l~ 294 (317)
T PRK11778 223 HQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMEEREV---LKV-RYQQKKK-LIER-LG 294 (317)
T ss_pred HHHHHHHHHHCCCC--CCHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHCCCCE---EEE-EEEECCC-HHHH-HH
T ss_conf 99999999863984--547875687577577698759974256689999987233848---999-9750799-8999-88
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 04778788888887
Q gi|254780747|r 266 LSISSLLEDTIPLM 279 (293)
Q Consensus 266 ~~~~~~~~~~~~~l 279 (293)
...+..+...+.-+
T Consensus 295 ~~~~~~~~~~~~~~ 308 (317)
T PRK11778 295 GSAAESADRLLLRL 308 (317)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 11
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=100.00 E-value=1.7e-43 Score=293.77 Aligned_cols=162 Identities=31% Similarity=0.491 Sum_probs=149.9
Q ss_pred EEEEEEEECC-------------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECC
Q ss_conf 9997666238-------------699999999986189987999975888888899999999999841-47867996033
Q gi|254780747|r 40 RIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHE 105 (293)
Q Consensus 40 ~i~i~G~I~~-------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvva~~~~ 105 (293)
+|.++|+|.+ .+++++.|++|.+|++||+|+|+||||||++.++++|+++|+++| .+|||++++++
T Consensus 1 vi~~~G~I~~g~~~~~~~~g~~~~~~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~KPV~a~~~~ 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 98999789768887888888716999999999995199962899996189818899999999999988659989999778
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
.|+|||||+||+||+|||+|++++|||||+.. ++.+|.++|++
T Consensus 81 ~aASg~Y~iA~aad~I~a~p~s~vGSIGV~~~-------------------------------------~~~~q~~vd~~ 123 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV-------------------------------------QLADQLSIENG 123 (177)
T ss_pred CCCCHHHHHHHCCCEEEECCCCEEEEEEEEEE-------------------------------------HHHHHHHHHHH
T ss_conf 56205778761278899869972776269866-------------------------------------68999999999
Q ss_pred HHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 6778999985149998899-8873498237889987798062389899999999
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
|++|++.|+++|+++.+++ +.+++|++|+|+||+++||||+||+++|+++++.
T Consensus 124 ~~~Fv~~Va~~R~~~~~~~~~~~~~G~v~~g~~A~~~GLiD~iG~~~dai~~~A 177 (177)
T cd07014 124 YKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKLA 177 (177)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 999999999747999678687606867788999998699765699999999759
No 12
>pfam01343 Peptidase_S49 Peptidase family S49.
Probab=100.00 E-value=1.2e-43 Score=294.67 Aligned_cols=152 Identities=34% Similarity=0.590 Sum_probs=148.5
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 84147867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
.+|++||||+|++++|+||||||||+||+|||+|++++|||||+++.++++++++|+||+++++++|+||++++||++||
T Consensus 2 ~~~~~KPV~a~~~~~aaSg~Y~lAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s 81 (154)
T pfam01343 2 ALRAGKPVVAYAGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKIDTIRAGEYKDAGSLFRPLT 81 (154)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 75589979999788457799999986698998799747467324011528799986487644663265455557567799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999887777766666778999985149998899887349823788998779806238989999999974187
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~ 243 (293)
+++|+++|.+++++|++|++.|+++|+++.++++++++|++|+|++|+++||||+||+++|+++++.++++.
T Consensus 82 ~e~r~~~~~~l~~~~~~F~~~Va~~R~~~~~~~~~~~~g~v~~g~~A~~~GLvD~ig~~deai~~l~~~~g~ 153 (154)
T pfam01343 82 PEEREALQRMLDETYQMFVQKVAKNRNLTVDQVDKIAEGRVWTGQQAVEAGLVDELGTLDDAIARLAELAGV 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999999999999999998669998999998679987799999879967379999999999998099
No 13
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=100.00 E-value=4.9e-39 Score=265.63 Aligned_cols=238 Identities=23% Similarity=0.292 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCEEEEEEEEEEECCH---------------------------HHHH
Q ss_conf 9999999999999999999705655----56778728999976662386---------------------------9999
Q gi|254780747|r 6 KKIKTRYVMLSLVTLTVVYFSWSSH----VEDNSPHVARIAIRGQIEDS---------------------------QELI 54 (293)
Q Consensus 6 ~~i~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~i~~i~i~G~I~~~---------------------------~~l~ 54 (293)
|.+...+++|.|+.+.+..++...+ ....+..-+.+++.|.|.+. .+++
T Consensus 8 R~l~lnvvfl~L~~~~~~~l~~~~s~~~s~~~~~~galLL~~~G~~~~~~d~~~r~~~l~~~l~G~~~~~lq~~~l~dvv 87 (614)
T TIGR00705 8 RELVLNVVFLLLVLLGVKILVILSSGEASKKLESKGALLLDLAGVVVDVQDESPRLSDLLQELLGNQKERLQKISLFDVV 87 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCHHHHH
T ss_conf 89999999999999876564200277654134523313451473378547765579999997535753035540255899
Q ss_pred HHHHHHHCCCCCCEEEEECC-CCCCC-HHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999861899879999758-88888-899999999999841-4786799603323322321000111000130135345
Q gi|254780747|r 55 ERIERISRDDSATALIVSLS-SPGGS-AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i~-SpGG~-~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs 131 (293)
.+|++|++|++|++|+++++ +-|++ .....+|..||.+|| ++||||||...| ..++|||||.||+|+.+|.+.|..
T Consensus 88 ~Ai~~A~~D~~I~~~~~DL~~~~g~dG~~~l~~~~~AL~~Fk~SgKpv~ay~~nY-S~~~YYLAsfAd~I~L~p~G~Vdl 166 (614)
T TIGR00705 88 NAIRQAADDRRIEGLVLDLKNFEGVDGSPALSEIGKALSEFKDSGKPVYAYGENY-SQGQYYLASFADEILLNPMGSVDL 166 (614)
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 9998301278708999733323576677327988999999985699089985253-402368876540240368872450
Q ss_pred HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHH
Q ss_conf 556530210245677742042255315521123466--678999988777776666677899998514--9998899887
Q gi|254780747|r 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVL 207 (293)
Q Consensus 132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R--~~~~~~~~~~ 207 (293)
-|+..+..||++++||+||.++.+|+|-||++.||| ++||||.|+..|.++.++|++|+..|+++| .++.+++-.-
T Consensus 167 ~Gl~~~~Lfy~~~l~K~~v~~~~~rvG~YKgavEpF~R~d~SPe~r~~~q~~l~~lWq~YL~~Va~NRsl~~~~~~~~~~ 246 (614)
T TIGR00705 167 HGLATETLFYKGMLDKLGVSVHVFRVGTYKGAVEPFLREDMSPEARENQQRWLGELWQNYLSSVAENRSLAIPKEQVLPS 246 (614)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
T ss_conf 35244764088799761286216896210242142355566888899999999999988888887031135708760211
Q ss_pred HCCCCC--------CHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 349823--------7889987798062389899999999741877
Q gi|254780747|r 208 SDGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 (293)
Q Consensus 208 ~~g~~~--------~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~ 244 (293)
+++..+ +++.|++.+||+.+....++-..+.++.+..
T Consensus 247 a~~~L~~l~~~~g~~~~~a~~~~lV~~~~~~~~~~~~l~~~~e~~ 291 (614)
T TIGR00705 247 AQGLLEALKKLKGDLAKYALEEKLVTAVVSQAEVEKALKELFEED 291 (614)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 212467877513547899987657899873517531044444887
No 14
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=1e-29 Score=207.07 Aligned_cols=158 Identities=37% Similarity=0.482 Sum_probs=141.9
Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
+|.++|+|.+ .+.++..|+.|..|+++|+|+|+||||||++.++.+|+++|+++ ++||++++.+.|+|+|||++++
T Consensus 1 ii~l~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~~~--~~~v~t~~~g~aaS~g~~i~~a 78 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAASAGYYIATA 78 (161)
T ss_pred CEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEECCCCEEEHHHHHHHC
T ss_conf 98966555789999999999999838999978999989998889999999999961--9999996687377604566515
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 11000130135345556530210245677742042255315521123466678999988777776666677899998514
Q gi|254780747|r 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 (293)
Q Consensus 118 ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R 197 (293)
||++|+.|++.+|++|+..... ...++.+++..+..++.+++.|.+.++++|
T Consensus 79 ~~~~~~~p~s~v~~h~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 130 (161)
T cd00394 79 ANKIVMAPGTRVGSHGPIGGYG----------------------------GNGNPTAQEADQRIILYFIARFISLVAENR 130 (161)
T ss_pred CCCCCCCCCCEEEEECCCCCCC----------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8853308874045525621478----------------------------889999999999999999999999999753
Q ss_pred CCCHHHHHH-HHCCCCCCHHHHHHCCCCCCC
Q ss_conf 999889988-734982378899877980623
Q gi|254780747|r 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227 (293)
Q Consensus 198 ~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~i 227 (293)
+++.+++.+ +.++.+|+|+||+++||||+|
T Consensus 131 g~~~~~i~~~~~~~~~lta~eA~e~GliD~I 161 (161)
T cd00394 131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCCHHHHHHHHCCCCEECHHHHHHCCCCCCC
T ss_conf 9999999998507958849999986996409
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.87 E-value=2.3e-21 Score=154.39 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=120.3
Q ss_pred EEEEEEEECCH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99976662386-----9999999998618998799997588888889999999999984147867996033233223210
Q gi|254780747|r 40 RIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 (293)
Q Consensus 40 ~i~i~G~I~~~-----~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i 114 (293)
.|.+-|.|.+. .+++..|+. .++.+-|.|+||||||++..+..|+++|+.. +.||++++.+.|+|+||+|
T Consensus 2 ~i~~~g~i~~~~~~~~~~~~~~L~~---~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~--~~~V~t~~~G~aaS~g~~I 76 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDA---LGDDSDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGLAASAASVI 76 (160)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHH
T ss_conf 6999955637768399999999982---7999997999989985899999999999867--9598999927077889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00111000130135345556530210245677742042255315521123466678999988777776666677899998
Q gi|254780747|r 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 (293)
Q Consensus 115 As~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va 194 (293)
+++||+++|.|++.+. .+. +.....|+ ..+.+.....++.+++.+.+..+
T Consensus 77 ~~ag~kr~~~~~s~im------iH~------------~s~~~~G~------------~~d~~~~~~~~~~~~~~~~~~~~ 126 (160)
T cd07016 77 AMAGDEVEMPPNAMLM------IHN------------PSTGAAGN------------ADDLRKAADLLDKIDESIANAYA 126 (160)
T ss_pred HHCCCEEEECHHHHHH------HCC------------CCCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8549859984578754------168------------66567878------------89999999999999999999999
Q ss_pred HCCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCC
Q ss_conf 5149998899887349823-78899877980623
Q gi|254780747|r 195 ESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 (293)
Q Consensus 195 ~~R~~~~~~~~~~~~g~~~-~~~~A~~~GLvD~i 227 (293)
++++++.++++++.++..| +|+||+++||||+|
T Consensus 127 ~~tg~~~~~i~~~~~~d~w~sa~EA~e~GliD~I 160 (160)
T cd07016 127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCCC
T ss_conf 8819999999998659908439999984898729
No 16
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.87 E-value=1.9e-21 Score=154.99 Aligned_cols=160 Identities=25% Similarity=0.315 Sum_probs=124.7
Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8999976662386--99999999986189987999975888888899999999999841478679960332332232100
Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 (293)
Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iA 115 (293)
|.+|+++|+|... ..+.+.|++|.+ ++.++|+|+||||||.+.++.+|+++|.+. ++||++|+.+.++|+||||+
T Consensus 1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~ivl~idTpGG~v~~~~~I~~~I~~~--~~pvv~~V~~~AaSAG~~Ia 77 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVNDRAASAGALIA 77 (178)
T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH
T ss_conf 989997356868899999999999996-899789999979998689999999999848--99999999992077999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01110001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
++||+|+|.|++.+|+.+.+.... + . ....-+...+..+...+++
T Consensus 78 ~aad~i~m~p~t~iG~a~Pv~~~g-------------------------~---~-------~~~~K~~s~~~a~~r~~Ae 122 (178)
T cd07021 78 LAADEIYMAPGATIGAAEPIPGDG-------------------------N---G-------AADEKVQSYWRAKMRAAAE 122 (178)
T ss_pred HHCCEEEECCCCCEECCCCCCCCC-------------------------C---C-------HHHHHHHHHHHHHHHHHHH
T ss_conf 846700488998530154255888-------------------------6---3-------1467899999999999999
Q ss_pred CCCCCHHHHHHHHCCC--------------CCCHHHHHHCCCCCCCCC-HHHHHH
Q ss_conf 1499988998873498--------------237889987798062389-899999
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR--------------IWTGAEAKKVGLIDVVGG-QEEVWQ 235 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~--------------~~~~~~A~~~GLvD~ig~-~~~a~~ 235 (293)
.||-+.+-.+...+.. .+|+++|+++|++|.+.. .+++++
T Consensus 123 ~~GRn~~~aeamV~~~~~v~~~~~~~g~~Ltlta~EAl~~g~~d~ia~~~~~Ll~ 177 (178)
T cd07021 123 KKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHH
T ss_conf 8399899999997514444211233455443589999973982788689999951
No 17
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.85 E-value=1.9e-20 Score=148.67 Aligned_cols=169 Identities=26% Similarity=0.304 Sum_probs=129.9
Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCC
Q ss_conf 8999976662386--999999999861899879999758888888999999999998414786799603---32332232
Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGY 112 (293)
Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~---~~~~S~~Y 112 (293)
|.+|+++|+|... +.+.+.|++|.+ ++.++|+|++|||||.+....+|.+.|. +++.|+++|+. ..++|+|+
T Consensus 1 V~vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~avvl~idTpGG~v~~~~~I~~~i~--~s~vpvi~~V~p~G~~A~SAGa 77 (187)
T cd07020 1 VYVLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPGGLLDSTREIVQAIL--ASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHH
T ss_conf 989996146768899999999999986-8998999998589607899999999998--1899989998789760771899
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
||+.+||.++|.|++.+|+...+.... -....+ .++..+-+.+..|...
T Consensus 78 ~I~~a~~~~~MaPgt~iGaA~PV~~~~---------------------------~~~~~~----~~~~K~~n~~~a~~rs 126 (187)
T cd07020 78 YILLAAHIAAMAPGTNIGAAHPVAIGG---------------------------GGGSDP----VMEKKILNDAVAYIRS 126 (187)
T ss_pred HHHHHCCHHHCCCCCCEECCCCEECCC---------------------------CCCCCH----HHHHHHHHHHHHHHHH
T ss_conf 999836075478987500144120689---------------------------887605----7899999999999999
Q ss_pred HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 98514999889988-7349823788998779806238-989999999974
Q gi|254780747|r 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYAL 240 (293)
Q Consensus 193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig-~~~~a~~~l~~~ 240 (293)
+++.||.+.+-.+. +.++..+|++||+++|+||.+. +.+|.++.+-.+
T Consensus 127 ~Ae~rGRn~~~Ae~~V~e~~~lta~eAl~~gviD~ia~~~~eLL~~l~G~ 176 (187)
T cd07020 127 LAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLDGR 176 (187)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCHHHHHHHCCCC
T ss_conf 99983999899999876147668999997698178849999999876891
No 18
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.78 E-value=2.3e-18 Score=135.50 Aligned_cols=164 Identities=27% Similarity=0.347 Sum_probs=125.1
Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCC
Q ss_conf 8999976662386--99999999986189987999975888888899999999999841478679960---332332232
Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGY 112 (293)
Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~---~~~~~S~~Y 112 (293)
|.+|+++|+|... ..+.+.|++|.++ +..+|+|++|||||.+....+|.++|. +++.|+++|+ +..++|+|.
T Consensus 1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~~-~a~~vii~ldTPGG~~~a~~~I~~~i~--~s~vPv~~yV~P~g~~A~SAGa 77 (172)
T cd07015 1 VYVAQIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQ--QSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEEECCCCCHHHHHH
T ss_conf 9899972678688999999999999977-998999998689628999999999998--2999989999479962676999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
||+.+||.++|.|++.+|+--.+... |+ ..+++. ....+...+..+...
T Consensus 78 ~I~~aa~~~~MaPgt~iGaA~PV~~~-------------------g~---------~~~~~~---~~~K~~n~~~a~~rs 126 (172)
T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGY-------------------SQ---------NGSIIE---APPKITNYFIAYIKS 126 (172)
T ss_pred HHHHHCCHHEECCCCCCCCCCEEECC-------------------CC---------CCCCCC---CCHHHHHHHHHHHHH
T ss_conf 99985543206799874357632068-------------------98---------888665---547789999999999
Q ss_pred HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCC-HHHHHH
Q ss_conf 98514999889988-73498237889987798062389-899999
Q gi|254780747|r 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG-QEEVWQ 235 (293)
Q Consensus 193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~ 235 (293)
+++.||-+.+-.+. +-+...+|++||+++|.||.+.. .+|.++
T Consensus 127 ~Ae~rGRn~~~ae~~V~e~~slta~eAl~~gviD~iA~~~~eLL~ 171 (172)
T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCHHHHHH
T ss_conf 999859988999999874247599999976981788599999950
No 19
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8e-16 Score=119.54 Aligned_cols=173 Identities=25% Similarity=0.294 Sum_probs=132.4
Q ss_pred CCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC---
Q ss_conf 56778728999976662386--9999999998618998799997588888889999999999984147867996033---
Q gi|254780747|r 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE--- 105 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~--- 105 (293)
...+++.|.++.++|.|... +.+.+.|+.|.+ ++...++|.+|+|||-+....+|.++|. .++-||+.|+-.
T Consensus 21 ~~~~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~--~s~vPV~~yv~p~ga 97 (436)
T COG1030 21 VATAEKKVYVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL--NSPVPVIGYVVPDGA 97 (436)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCC
T ss_conf 1256771899992574277799999999999985-7984799996089726799999999987--599977999948985
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
+|+|+|.||+.+||.++|.|++.+|+.-.+... +.+.++.. .-+.
T Consensus 98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~------------------------------g~~~~~~~-----~~n~ 142 (436)
T COG1030 98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGG------------------------------GTSAKEAN-----TTNA 142 (436)
T ss_pred CHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCC------------------------------CCCCCCHH-----HHHH
T ss_conf 110403279885676551798743546502479------------------------------98855014-----3789
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf 67789999851499988998873-498237889987798062389-899999999741
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG 241 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l~~~~ 241 (293)
+..|....++.||-+.+-.++.. +..-+++++|.+.|++|-+.. ..|+++.+....
T Consensus 143 ~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~ 200 (436)
T COG1030 143 AVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS 200 (436)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 9999999999839986999998642157786679855940035587899998704775
No 20
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=99.68 E-value=1.5e-15 Score=117.87 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=119.1
Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
+|-+.|.|.+ ..+++..|-.....+.-+-|.|+||||||++..+..|+++|+..+ -||++++.+.|+|+|.+|+++
T Consensus 18 ii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~--~~V~Ti~~G~aaS~aslI~~a 95 (182)
T pfam00574 18 IIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PDVSTICLGLAASMGSFLLAA 95 (182)
T ss_pred EEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCHHHC
T ss_conf 899898436899999999999985629699989999899967899999999998479--984899920361455320102
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
|| +-++.|++.+- .|. +.....| +..+.+.....++.+.+.+.+..++
T Consensus 96 G~~g~R~~~p~s~~M------iHq------------~~~~~~G------------~~~di~~~~~~l~~~~~~i~~~ya~ 145 (182)
T pfam00574 96 GTKGKRFALPNARIM------IHQ------------PLGGAQG------------QASDIEIQAEEILKIRERLNEIYAE 145 (182)
T ss_pred CCCCCEEECCCCCEE------EEC------------CCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 677744456570102------563------------6546664------------8999999999999999999999998
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCC
Q ss_conf 1499988998873498-237889987798062389
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGG 229 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~ 229 (293)
+.|.+.+.+++..+.. .++++||+++||||+|..
T Consensus 146 ~tg~~~~~i~~~~~~d~~lta~EA~~~GliD~Ii~ 180 (182)
T pfam00574 146 HTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIE 180 (182)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf 86949999999850783246999998399868505
No 21
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.68 E-value=1.7e-15 Score=117.54 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=117.2
Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
+|-+.|+|.+ ...++..|.-....+.-|.|.|+||||||++.+...|+++|+..+ .||++++.+.|+|.|.+|+++
T Consensus 2 ii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~--~~v~tv~~G~aaS~as~i~~a 79 (162)
T cd07013 2 EIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIK--ADVVTIIDGLAASMGSVIAMA 79 (162)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHC
T ss_conf 899888017899999999999972629799989999799857999999999998479--998999630465165899973
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
+| +-|+.|++.+-. |.... | +. -+..+-+.....++...+...+..++
T Consensus 80 G~~g~R~~~~~s~~Mi------Hq~~~---------------g--------~~-G~~~di~~~~~~l~~~~~~i~~i~a~ 129 (162)
T cd07013 80 GAKGKRFILPNAMMMI------HQPWG---------------G--------TL-GDATDMRIYADLLLKVEGNLVSAYAH 129 (162)
T ss_pred CCCCCCEECCCHHHHH------HCCCC---------------C--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7888817676689988------06345---------------6--------57-79999999999999999999999999
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCC
Q ss_conf 1499988998873498-2378899877980623
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV 227 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~i 227 (293)
+.+++.+++++..+.. .++|+||+++||||+|
T Consensus 130 ~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD~I 162 (162)
T cd07013 130 KTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCC
T ss_conf 889099999986148823669999985998809
No 22
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.67 E-value=9.5e-16 Score=119.07 Aligned_cols=162 Identities=23% Similarity=0.263 Sum_probs=124.2
Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293)
Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293)
|-+-|+|.+. ..++.+|-.+...+..|.|.|+||||||++.+...|++.++.. +.||.+++.+.++|.|-.|++++
T Consensus 30 I~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~AaSmgs~l~~aG 107 (200)
T COG0740 30 IFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQAASMGSVLLMAG 107 (200)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHCC
T ss_conf 9996422507788899999999833998986999968996610569999999855--99869997467876899999658
Q ss_pred CCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 100--013013534555653021024567774204225531552112346667899998877777666667789999851
Q gi|254780747|r 119 NII--VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293)
Q Consensus 119 d~I--~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293)
++- ++-|++.+- -|... |- +. -...+-+.--..++.+.....+..+++
T Consensus 108 ~~g~r~~lPnsrim------IHqP~----------------gg-------~~-G~a~Di~i~A~ei~~~~~~l~~i~a~~ 157 (200)
T COG0740 108 DKGKRFALPNARIM------IHQPS----------------GG-------AQ-GQASDIEIHAREILKIKERLNRIYAEH 157 (200)
T ss_pred CCCCCEECCCCEEE------EECCC----------------CC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87871367864389------86687----------------56-------76-678799999999999999999999988
Q ss_pred CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf 4999889988734-9823788998779806238989999
Q gi|254780747|r 197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVW 234 (293)
Q Consensus 197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~~a~ 234 (293)
-|.+.+++....+ ....+|+||+++||||++....++.
T Consensus 158 TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 158 TGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred HCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCCCCCC
T ss_conf 099889999861234457999999748855321333212
No 23
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60 E-value=3.5e-14 Score=109.18 Aligned_cols=162 Identities=23% Similarity=0.304 Sum_probs=118.6
Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
.|-+.|+|.+. ..++.+|--....+.-|-|-|+||||||++.+.-.|+++++..+ -||.+.+.+.|+|.|-+|.++
T Consensus 34 iifl~~~i~~~~a~~iia~ll~L~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~aslil~a 111 (204)
T PRK12553 34 IIFLGGQVDDASANDVMAQLLVLESIDPDRPITMYINSPGGSVTSGDAIYDTIQFVR--PDVQTVGTGQAASAGAVLLAA 111 (204)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEHHHHHHHHHHC
T ss_conf 899888338899999999999974739599989999799855768999999999569--984999974755568899961
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
++ +.++-|++.+-. ..|.. .|. ++ -+..+.+.-...+..+.+.+.+..++
T Consensus 112 G~kgkR~a~pns~iMi-----HqP~~---------------~gg-------~~-G~a~di~i~a~ei~~~~~~i~~iya~ 163 (204)
T PRK12553 112 GTPGKRFALPNTRFLI-----HQPSL---------------GGG-------IQ-GQASDLEIQAREILRMRERLERTLAE 163 (204)
T ss_pred CCCCCEEECCCCEEEE-----CCCCC---------------CCC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7746646368874677-----37653---------------478-------65-55768999999999999999999998
Q ss_pred CCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 14999889988734-9823788998779806238989
Q gi|254780747|r 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQE 231 (293)
Q Consensus 196 ~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~ 231 (293)
+-|.+.+++.+..+ ...++++||+++||||+|-+-.
T Consensus 164 ~Tg~~~e~i~~~~~rd~~msa~EA~eyGliD~Ii~~~ 200 (204)
T PRK12553 164 ATGQPREKIRKDTDRDKWLTAEEAKDYGLVDQILTSR 200 (204)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCH
T ss_conf 8697999999872478515799999819997871632
No 24
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60 E-value=5e-14 Score=108.22 Aligned_cols=159 Identities=24% Similarity=0.300 Sum_probs=118.1
Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
.|-+.|+|.+ ..+++..|--....+.-|-|.|.||||||++.+.-.|+++++..+ -||.+++.+.|+|.|-+|+++
T Consensus 29 iifl~~~i~~~~a~~iia~llyL~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Tv~~G~aaS~aslIl~a 106 (197)
T PRK00277 29 IIFLGGEVEDHMANLIVAQLLFLEAEDPTKDIYLYINSPGGSVTAGMAIYDTMQFIK--PDVSTICMGQAASMGAFLLAA 106 (197)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCCHHHHC
T ss_conf 899898107899999999999864619699989999799866878999999997179--973999874600210257760
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
++ +.|+.|++.+-.- .| ..| +. -+..+.+.-...++.+.+.+.+..++
T Consensus 107 G~kgkR~~~pns~iMiH-----qp----------------~~g--------~~-G~a~di~~~a~el~~~~~~i~~iya~ 156 (197)
T PRK00277 107 GTKGKRFALPNSRIMIH-----QP----------------LGG--------FQ-GQATDIEIHAREILKIKKRLNEILAE 156 (197)
T ss_pred CCCCCEEECCCHHHHHC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78663422604466631-----46----------------546--------67-77999999999999999999999999
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH
Q ss_conf 1499988998873498-2378899877980623898
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~ 230 (293)
+-|.+.+++.+..+-. .++++||+++||||+|-+-
T Consensus 157 ~Tg~~~~~i~~~~~rd~~msa~EA~~yGliD~Il~~ 192 (197)
T PRK00277 157 HTGQSLEKIEKDTDRDNFMSAEEAKEYGLIDKVITK 192 (197)
T ss_pred HHCCCHHHHHHHCCCCEECCHHHHHHHCCCCEEECC
T ss_conf 879399999986247802469999980999788141
No 25
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.59 E-value=6.9e-14 Score=107.35 Aligned_cols=160 Identities=24% Similarity=0.264 Sum_probs=118.1
Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
.|-+.|+|.+. ..++.+|--....+.-|-|.|+||||||++.+.-.|+++++..+ -||.+.+.+.|+|.|-+|+++
T Consensus 32 iifl~~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~AaS~aslilaa 109 (201)
T CHL00028 32 LLFLGQELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGIAIYDTMQFVK--PDVHTICLGLAASMGSFILAG 109 (201)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEHHCCHHHHHHHC
T ss_conf 899898017899999999999972649799989999899854868999999998559--995899760010536788614
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
++ +-++.|++.+-.- .| ..|- + .-+..+.+.-...+..+.+.+.+..++
T Consensus 110 G~kgkR~~~pns~iMIH-----qp----------------~~g~-------~-~G~a~di~~~a~el~~~~~~i~~iya~ 160 (201)
T CHL00028 110 GEITKRLAFPHARVMIH-----QP----------------ASSF-------Y-EGQASEFVLEAEELLKLRETLTRVYVQ 160 (201)
T ss_pred CCCCCEEECCCHHHHEE-----CC----------------CCCC-------C-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88763562658556124-----45----------------4676-------7-897899999999999999999999998
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH
Q ss_conf 1499988998873498-2378899877980623898
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~ 230 (293)
+-|.+.+++++..+-. .++++||+++||||+|.+.
T Consensus 161 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~ 196 (201)
T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVE 196 (201)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCC
T ss_conf 879599999987157842679999981998888257
No 26
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.56 E-value=9.4e-14 Score=106.50 Aligned_cols=160 Identities=23% Similarity=0.302 Sum_probs=116.8
Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
.|-+.|+|.+. .+++..|--...++.-|-|.|+||||||++..+-.|+++++..+ -||.+.+.+.|+|.|-+|.++
T Consensus 27 iifl~~~i~~~~a~~ii~~ll~L~~e~~~k~I~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~as~il~a 104 (196)
T PRK12551 27 IIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA 104 (196)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEHHHHHHHHHC
T ss_conf 899898127899999999999860729799979999799866655699999996269--997999962402256789974
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
++ +.++.|++.+-.- .| ..| +. -+..+.+.-...+..+.+.+.+..++
T Consensus 105 G~kgkR~~~pns~iMIH-----qp----------------~~~--------~~-G~a~di~~~a~el~~~~~~i~~i~a~ 154 (196)
T PRK12551 105 GAKGKRSSLQHSRIMIH-----QP----------------LGG--------AR-GQASDIRIQADEILFLKERLNTELSE 154 (196)
T ss_pred CCCCCCCCCCCCEEEEC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88886012656024770-----56----------------767--------56-75879999999999999999999999
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCHH
Q ss_conf 1499988998873498-23788998779806238989
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE 231 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~~ 231 (293)
+-|.+.+++.+..+-. .++++||+++||||+|-+..
T Consensus 155 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~r 191 (196)
T PRK12551 155 RTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
T ss_conf 8795999999873578606799999829987860789
No 27
>pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.
Probab=99.41 E-value=1.4e-11 Score=92.87 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=119.3
Q ss_pred CCCCEEEEEEEEEEE-------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 778728999976662-------------3869999999998618998799997588888889999999999984147867
Q gi|254780747|r 33 DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I-------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpv 99 (293)
-++.-|..|+=.-.+ -++++++++|+..-+|- -|-|-+.+|||.+.++++|+.|+++. +.|+
T Consensus 48 r~srVItlIHRQE~is~lGiP~~ryI~ieDSE~VLRAIr~Tp~d~---PIDlIlHTPGGlvLAa~QIA~AL~~H--~akv 122 (286)
T pfam01972 48 RGSRVITMIHRQESIGFLGIPIYKFITIEDSEEILRAIRLTPKDM---PIDLIIHTPGGLALAATQIAKALKEH--KAKT 122 (286)
T ss_pred HCCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCC---CEEEEEECCCHHHHHHHHHHHHHHHC--CCCE
T ss_conf 388699985201246543852743226232899999997599999---85799857961689999999999958--9973
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCHH--HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 996033233223210001110001301353455565-302102--45677742042255315521123466678999988
Q gi|254780747|r 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYV--KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293)
Q Consensus 100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~-~~~~~~--~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293)
.+++..+|.|||.+||.+||+|+|.+++..|.+--. ++.|-. -...++-+++- .-+.+--|.+-.+.
T Consensus 123 tV~VPHYAMSGGTlIALAADEIvMd~nAVLGPvDPQlG~~PAaSIl~v~e~K~~~~----------idD~TLIlaDva~K 192 (286)
T pfam01972 123 TVIVPHYAMSGGTLIALAADEIIMDENAVLGPVDPQIGQYPAASILKAVEKKGPKK----------IDDQTLILADISKK 192 (286)
T ss_pred EEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC----------CCCHHHHHHHHHHH
T ss_conf 99950310567420321066055677655588782026876799999997479131----------46400127888999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----CCC-----CCCHHHHHHCCCCCCCCCHHHHHH--HHHHHC
Q ss_conf 77777666667789999851499988998873----498-----237889987798062389899999--999741
Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS----DGR-----IWTGAEAKKVGLIDVVGGQEEVWQ--SLYALG 241 (293)
Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~----~g~-----~~~~~~A~~~GLvD~ig~~~~a~~--~l~~~~ 241 (293)
.++.+-+..+ ...+. +++.++.++++ .|+ +.|.++|+++||-=..+--+++-+ +++.+.
T Consensus 193 Ai~Qv~~~v~-----~LL~~-k~~eeka~~ia~~L~~G~wTHDyPit~e~ak~lGl~V~t~~P~evy~LM~LypQp 262 (286)
T pfam01972 193 AIKQMEEFVY-----NLLKD-KYGEEKAKEIAKILTEGRWTHDYPLTVEELKELGLEVNTNVPEEVYELMELYPQP 262 (286)
T ss_pred HHHHHHHHHH-----HHHHC-CCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 9999999999-----99874-3888999999999806844178888999999859966689989999999847787
No 28
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.38 E-value=7.2e-12 Score=94.64 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=109.3
Q ss_pred EEEEEEEECCHH------------HHHHHHHHHHCCCCCCEEEEECCCCC---------CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999766623869------------99999999861899879999758888---------888999999999998414786
Q gi|254780747|r 40 RIAIRGQIEDSQ------------ELIERIERISRDDSATALIVSLSSPG---------GSAYAGEAIFRAIQKVKNRKP 98 (293)
Q Consensus 40 ~i~i~G~I~~~~------------~l~~~l~~a~~d~~ik~ivL~i~SpG---------G~~~~~~~i~~ai~~~k~~kp 98 (293)
.|-+.++|.+.+ .++.+|--...++.-|-|.|+||||| |+++++-.|++.++..+. |
T Consensus 32 Iiflg~pi~~~d~~~~~~~~~vanliiAqLL~L~~ed~~k~I~lYINSpGgs~~~G~~~G~vt~~lAIyDtMq~Ik~--~ 109 (222)
T PRK12552 32 IVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKP--P 109 (222)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--C
T ss_conf 89867865642001101207899999999998514389999799983899765567643432306789899851599--8
Q ss_pred EEEEECCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 7996033233223210001110--00130135345556530210245677742042255315521123466678999988
Q gi|254780747|r 99 VITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293)
Q Consensus 99 vva~~~~~~~S~~Y~iAs~ad~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293)
|.+.+-+.|+|.|-+|.+++++ -++-|++.+-.- .| .|.. + -+..+.+
T Consensus 110 V~Tic~G~AaSmgalLLaaG~kGkR~alPnsriMiH-----QP-----------------~gg~-------~-GqAsDI~ 159 (222)
T PRK12552 110 VHTICIGQAMGTAAMILSAGTKGQRASLPHASIVLH-----QP-----------------RSGA-------R-GQATDIQ 159 (222)
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCEECCCCHHHHC-----CC-----------------CCCC-------C-CCHHHHH
T ss_conf 578852787709999986388877212687113223-----87-----------------7677-------7-7799999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCC
Q ss_conf 777776666677899998514999889988734-98237889987798062389
Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 (293)
Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~ 229 (293)
.-...+....+...+..+++-|.+.+++.+..+ ...++++||+++||||+|-+
T Consensus 160 i~a~Eil~~r~~l~~ila~~TGq~~e~I~~d~~RD~~msA~EA~eYGLID~Il~ 213 (222)
T PRK12552 160 IRAKEVLHNKRTMLEILSRNTGQTVEKLSKDSDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEC
T ss_conf 999999999999999999987969999998718775678999998098768722
No 29
>KOG0840 consensus
Probab=99.26 E-value=5.8e-11 Score=88.94 Aligned_cols=158 Identities=24% Similarity=0.294 Sum_probs=107.1
Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293)
Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293)
|-+-++|.+. +.++.++--...++.-|-|.|.||||||++++.-.|++.++..|. ||.+.+-++|+|-|-+|.+++
T Consensus 95 i~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~--~V~Tic~G~Aas~aalLLaaG 172 (275)
T KOG0840 95 VFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKP--DVSTICVGLAASMAALLLAAG 172 (275)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--CCEEEEHHHHHHHHHHHHHCC
T ss_conf 641885768999999999998632388887689984899733102568988876379--711220556776888998668
Q ss_pred CC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 10--0013013534555653021024567774204225531552112346667899998877777666667789999851
Q gi|254780747|r 119 NI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293)
Q Consensus 119 d~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293)
.+ -|+-|++.+-- ..| .|.+- -.-+++.-+.+| +....+...+..+++
T Consensus 173 ~KG~R~alPnsriMI-----hQP-----------------~gga~---Gqa~Di~i~akE-----~~~~k~~l~~i~a~~ 222 (275)
T KOG0840 173 AKGKRYALPNSRIMI-----HQP-----------------SGGAG---GQATDIVIQAKE-----LMRIKEYLNEIYAKH 222 (275)
T ss_pred CCCCEEECCCCEEEE-----ECC-----------------CCCCC---CCCHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_conf 876400067750578-----656-----------------77767---661379998999-----999999999999976
Q ss_pred CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCH
Q ss_conf 4999889988734-982378899877980623898
Q gi|254780747|r 197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~ 230 (293)
-|.+.|.+.+-.+ .+.+++++|+++||||++...
T Consensus 223 Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840 223 TGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHCC
T ss_conf 39969999754032302799999881633455328
No 30
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.19 E-value=4.5e-10 Score=83.37 Aligned_cols=163 Identities=20% Similarity=0.313 Sum_probs=110.6
Q ss_pred CCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH------------HHHHHHHH
Q ss_conf 77872899997666238------6999999999861899879999758----88888899------------99999999
Q gi|254780747|r 33 DNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA------------GEAIFRAI 90 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~------------~~~i~~ai 90 (293)
..++.|+.|.++-+-.+ .+++.+.++.+.+|+++++|+|.=+ |.|++... .+...+.+
T Consensus 13 ~~d~gVa~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
T PRK05869 13 SQDAGLATLLLSRPPTNALTRQVYREIVAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAV 92 (225)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 78699899996787667899999999999999996489945999988997477267778772268334557899999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
..++ .+||+++.+++.|..||..++++||.+++.+.+.+|.--+ ++|+-+.
T Consensus 93 ~~i~~~pkPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~---------------- 144 (225)
T PRK05869 93 DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI------------LAGLAPR---------------- 144 (225)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHCHHHHCCCCEEECCCC------------CCCCCCC----------------
T ss_conf 999838998999982800347899999704463079849988210------------6474877----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.. ....+...|-..| ..+-+..|+.|++++|+++||||++...+++.++..+.+
T Consensus 145 ~g-------------~~~~l~~~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (225)
T PRK05869 145 GD-------------GMARLTRAAGPSR-----AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 198 (225)
T ss_pred CC-------------HHHHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf 68-------------9999999977999-----999998599777999998498627658128999999999
No 31
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=3.3e-10 Score=84.21 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=107.4
Q ss_pred CCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH--------------HHHHHHHH
Q ss_conf 7872899997666238------69999999998618998799997588----888889--------------99999999
Q gi|254780747|r 34 NSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAY--------------AGEAIFRA 89 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~--------------~~~~i~~a 89 (293)
-+++|++|.++-|=.+ .+++.+.++.+.+|+++++|||.=+. .|++.. ....+.+.
T Consensus 10 ~~~~Va~itlnrP~~Nal~~~m~~el~~al~~~~~d~~vr~vvl~g~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK06495 10 VSDHVAVVTLDNPPVNALSREMRDELIAVFDSLNDRPDVRVVVLTGAGKVFCAGADLKNRPDLESGPGALWAHNRRTREV 89 (257)
T ss_pred EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999976775368999999999999999972999169999767981276887565146556703589999999999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+..+. ..||||+.+++.|..||..+|++||.+++.+.+.++. |.. ++|+- |
T Consensus 90 ~~~i~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~-------pe~-----~~Gl~------g---------- 141 (257)
T PRK06495 90 FYCIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGL-------PEI-----DVGLA------G---------- 141 (257)
T ss_pred HHHHHHCCCCEEEEECCEEECCCHHHHHHHHHHEECCCCEEEC-------CCC-----CEEEE------C----------
T ss_conf 9999958998999971377417225665432410047888986-------323-----74120------5----------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 7899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.+ ..+. .. +... ..+-+..|+.|+|++|+++||||++...++..+++.+.+
T Consensus 142 -g~----~~l~-----------r~------iG~~~a~~l~ltg~~~~aeeA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK06495 142 -GG----KHAM-----------RL------FPHSLTRRMMLTGYRVPASELYRLGIIEACLPPDELMPEAMALA 193 (257)
T ss_pred -CH----HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf -36----7899-----------98------47999999986189678999998799748748779999999999
No 32
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=7.1e-10 Score=82.12 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=108.7
Q ss_pred CCCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHH
Q ss_conf 77872899997666238-------69999999998618998799997588----88888999----------99999999
Q gi|254780747|r 33 DNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQ 91 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~ 91 (293)
..++.|+.|.++-|=.- .+++.+.++.+.+|+++++|||.=+. .|++.... ......++
T Consensus 12 ~~~dgVa~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 91 (260)
T PRK08138 12 RPADGVALLRLNRPDARNALNMEVRQQLAEHFTSLSEDPDIRVIVLTGGGTVFAAGADLKEFATAGAIELYLRHTERYWE 91 (260)
T ss_pred ECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 82898899997478878998999999999999999768996699997899876468788888445846789999999999
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293)
Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293)
.+. ..||||+.+++.|..||.-+|++||-+++.+.+.++.-.+ ++|+-+. .+.
T Consensus 92 ~i~~~~kPvIaaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~----- 145 (260)
T PRK08138 92 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEI------------KVGLMPG---------AGG----- 145 (260)
T ss_pred HHHHCCCCEEEEECCEEECCCHHHHHHCCCCCCCCCCCEECCCC------------EECCCCC---------CCH-----
T ss_conf 99838998999978940333079987410113354442446410------------1687888---------558-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
-. .+...|-..| ..+-+..|+.|+|++|+++|||+++...+++.+++.+.+
T Consensus 146 ----~~-----------~l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK08138 146 ----TQ-----------RLVRAVGKFK-----AMRMALTGCMVPAPEALAIGLVSEVVEDEETLPRALELA 196 (260)
T ss_pred ----HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ----99-----------9999975999-----999986088257999998699538748169999999999
No 33
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=9e-10 Score=81.45 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=108.7
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH
Q ss_conf 787289999766623-8------69999999998618998799997588----8888899---------------99999
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF 87 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~ 87 (293)
-+++|+.|.++-|=. + .+++.+.++.+.+|+++++|||+=+. .|++... .+...
T Consensus 11 ~~~~ia~itlNrP~~~Nal~~~~~~~l~~~~~~~~~d~~v~~iVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
T PRK06688 11 LADGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVLLTGAGGAFSAGGDIKDFDAAPGGGPTYPEDELAPVN 90 (263)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999974777579999999999999999996389936999977998676897679887256665055789899999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.++.+. .+||+|+.+++.|..||.-++++||-+++.+.+.+|.-. -++|+-+.
T Consensus 91 ~~~~~i~~~~kPvIaai~G~a~GgG~~la~~cD~ria~~~a~f~~pe------------~~~Gl~p~------------- 145 (263)
T PRK06688 91 RFLRAIAALPKPVVAAVNGAAVGVGVSLALACDLVYASDSAKFSLPF------------AKLGLCPD------------- 145 (263)
T ss_pred HHHHHHHHCCCCEEEEECCEECCCCHHHHHHCCCHHCCCCCEECCCC------------CCEECCCC-------------
T ss_conf 99999995899889997576614527888623401004566660651------------24636888-------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
..-. .. +. |.+.... .+-+..|+.+++++|+++||||++...++..+++.+.+
T Consensus 146 ---~~~~--~~-----------l~------r~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a 199 (263)
T PRK06688 146 ---AGGS--AL-----------LP------RLIGRARAAELLLLGEPLTAAEALRIGLVNRVVPAAELDAEADAQA 199 (263)
T ss_pred ---CCHH--HH-----------HH------HHHCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf ---3188--99-----------99------9838999999874089878999998799426658068999999999
No 34
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.15 E-value=1.4e-09 Score=80.33 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=105.0
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHH
Q ss_conf 787289999766623-8------69999999998618998799997588----88888999----------999999998
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQK 92 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~ 92 (293)
.++.|+.|.++-|=. + ..++.+.++.+.+|++++.|||.=.. .|+++... +.......+
T Consensus 10 ~~~~ia~itlnRP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK09674 10 RQQRVLLLTLNRPEARNALNTALLAQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLVATLNDPRPQLWQR 89 (257)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999965888889989999999999999986389906999978998770776527650245144554189999999
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
+. ..||||+.+++.|..||..++++||-+++.+.+.++.-. -|+|+-+. . ..
T Consensus 90 i~~~~kPvIaav~G~a~GgG~~la~~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~- 142 (257)
T PRK09674 90 IQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPE------------ITLGIMPG---------A-----GG- 142 (257)
T ss_pred HHHCCCCEEEEECCEEEEEEHHHHHHCCCCHHHHHHHHCCCC------------CEEEECCC---------C-----CH-
T ss_conf 983899899998893123145765530210233321105720------------32762788---------4-----49-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
-.. +...+-.. ...+-+..|+.+++++|++.|||+++...++..++..+.+
T Consensus 143 ---~~~-----------l~~~iG~~-----~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK09674 143 ---TQR-----------LIRSVGKS-----LASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA 193 (257)
T ss_pred ---HHH-----------HHHHHHHH-----HHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf ---999-----------99997599-----9999998589987999997897335658168999999999
No 35
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.3e-09 Score=80.54 Aligned_cols=164 Identities=21% Similarity=0.330 Sum_probs=111.5
Q ss_pred CCCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH------------HHH
Q ss_conf 567787289999766623-8------69999999998618998799997588-----88888999------------999
Q gi|254780747|r 31 VEDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG------------EAI 86 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~------------~~i 86 (293)
.+..+|+|+.|.++-+=. + .+++.+.++.+.+|++|++|||.=.. .|++.... ..+
T Consensus 8 ~~~~~~~Va~itlnrPe~~Nal~~~m~~~l~~al~~~~~d~~vr~vvl~g~G~~~F~aG~Dl~e~~~~~~~~~~~~~~~~ 87 (261)
T PRK07657 8 VDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI 87 (261)
T ss_pred EEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 97853998999982898779989999999999999997589964999966998764289984766038877899999999
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293)
Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293)
.+.+..+. .+||+++.+++.|..+|..++++||.+++.+.+.++.-. -++|+-+. .+.
T Consensus 88 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~ 146 (261)
T PRK07657 88 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE------------TTLAIIPG---------AGG 146 (261)
T ss_pred HHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCCCCCCCEEEEEE------------EEECCCCC---------CCH
T ss_conf 999999982999899997796640318998844603012554044200------------00467887---------468
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 66678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
-..+ ... +.... .+-+..|+.+++++|+++||||++...++...++.+++
T Consensus 147 ---------~~~l-----------~r~------iG~~~a~~llltg~~~~aeeA~~~Glv~~v~~~~~l~~~a~~la 197 (261)
T PRK07657 147 ---------TQRL-----------PRL------IGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 197 (261)
T ss_pred ---------HHHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHHHHHHHHH
T ss_conf ---------9999-----------998------66999999998099988999997798403758368999999999
No 36
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.5e-09 Score=80.04 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=106.4
Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH
Q ss_conf 7872899997666238-------69999999998618998799997588----8888899---------------99999
Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF 87 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~ 87 (293)
.+++|+.|.++-|=.- .+++.+.++++.+|+++++|||.=.. .|++... .+.+.
T Consensus 9 ~~g~va~ItlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (259)
T PRK07511 9 RSGSTLVLTLSNPGARNALHPDMYAAGIEALATAERDPSIRAVVLTGADGFFCAGGNLNRLLENRAKPPSVQAASIDLLH 88 (259)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999962778789979999999999999997689965999989999623643689886342489889999999999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.+..+. .+||+|+.+++.|..||.-++++||-+++.+.+.++. |. -++|+-+. .
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p~-----~~~Gl~p~---------~--- 144 (259)
T PRK07511 89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAADDAKFVM-------AY-----VKVGLTPD---------G--- 144 (259)
T ss_pred HHHHHHHHCCCCEEEEECCCEEHHHHHHHHHCCCCCCCCCCEEEC-------CC-----CCEEECCC---------C---
T ss_conf 999999839998999965703113389998327265454556745-------76-----66301688---------7---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6678999988777776666677899998514999889-9887349823788998779806238989999999974
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293)
... ..+ ...| .... .+-+..|+.|+|++|+++|||+++...++..+++.+.
T Consensus 145 ----g~~--~~l-----------~r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~ 196 (259)
T PRK07511 145 ----GGS--WFL-----------ARAL------PRQLATEILLEGKPISAERLHALGVVNRLAKPGAALDEALAL 196 (259)
T ss_pred ----CHH--HHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf ----699--999-----------9996------899999999848999799998889965743811899999999
No 37
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.6e-09 Score=79.95 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=109.5
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-------HHHHHHHHHHHC-C
Q ss_conf 87289999766623-8------69999999998618998799997588----8888899-------999999999841-4
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-------GEAIFRAIQKVK-N 95 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-------~~~i~~ai~~~k-~ 95 (293)
+++|+.|.++-|=. + .+++.+.++.+ .|+++++|||.=+. .|++... .+.+.+.+..+. .
T Consensus 7 ~g~Va~itlnrP~~~NAl~~~m~~~l~~al~~~-~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~i~~~ 85 (243)
T PRK07854 7 DGQVLTIELQRPERRNALNSELVEELREAVRKA-GDAGARAIVLTGQGTVFCAGADLSGDVYADDFPDALIELLHAIDAA 85 (243)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 899999997587767997999999999999972-3899559999788981668998655211667789999999999858
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 78679960332332232100011100013013534555653021024567774204225531552112346667899998
Q gi|254780747|r 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 (293)
Q Consensus 96 ~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~ 175 (293)
+||||+.+++.|..||.-+|++||-+++.+.+.++.- .-|+|+.+. + . .-
T Consensus 86 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~p------------~~~~Gl~~~------------~----g--~~ 135 (243)
T PRK07854 86 PVPVIAAINGPAIGAGLQLALACDLRVVAPEAYFQFP------------VAKYGLALD------------N----W--TI 135 (243)
T ss_pred CCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEECC------------CCCEEECCC------------C----C--HH
T ss_conf 9988999758323351578860999996477657566------------554145779------------6----2--99
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 877777666667789999851499988998873498237889987798062389899999999741877
Q gi|254780747|r 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 (293)
Q Consensus 176 ~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~ 244 (293)
. .+...|-..| ..+-++.|+.+++++|++.|||+++...+++.+++.+++...
T Consensus 136 ~-----------~l~~~vG~~~-----A~~llltg~~i~A~eA~~~Glv~~v~~~~~a~~~A~~ia~~~ 188 (243)
T PRK07854 136 R-----------RLSSLVGGGR-----ARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGLA 188 (243)
T ss_pred H-----------HHHHHHHHHH-----HHHHHHHCCEECHHHHHHCCCCCEECCHHHHHHHHHHHHCCC
T ss_conf 9-----------9999864999-----999999399425999987799668518899999999998759
No 38
>PRK07830 consensus
Probab=99.12 E-value=1.7e-09 Score=79.78 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=107.8
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-------------HHHHHHH
Q ss_conf 87289999766623-8------6999999999861899879999758----888888999-------------9999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-------------EAIFRAI 90 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-------------~~i~~ai 90 (293)
+++|+.|.++-|=. + .+++.+.++++.+|+++++|||.=+ |.|++.... +...+.+
T Consensus 18 ~~~Va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (267)
T PRK07830 18 TDGVLSVTINRPDSLNSLTVPVLTGLADALEGAATDPRVKVVRLGGAGRGFSSGAGISADDVWGGGEPPTAVVDEANRAV 97 (267)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 89999999827998899899999999999998854899559999689987717887055540266565899999999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
+.+. ..||+++.+++.|..||.-++++||-+++.+.+.++.- .-++|+-+.
T Consensus 98 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~lGi~p~---------------- 149 (267)
T PRK07830 98 RAIVALPVPVVAVVQGPAAGVGVSLALACDLVLASESAFFMLA------------FTKIGLMPD---------------- 149 (267)
T ss_pred HHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECC------------CCCEEEECC----------------
T ss_conf 9999689989999778377025799974321333457477167------------677775178----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+.- ...+ ...|-..| ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus 150 ~g~--~~~l-----------~~~iG~~~-----A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 203 (267)
T PRK07830 150 GGA--SALV-----------AAAIGRIR-----AMRMALLAERLPAAEALAWGLVSAVYPADDFDAEVDKVI 203 (267)
T ss_pred CCH--HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf 559--9999-----------99966999-----999986289887999998799758638589999999999
No 39
>PRK06951 consensus
Probab=99.11 E-value=1.6e-09 Score=79.83 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=108.9
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHHHHHHHHHC
Q ss_conf 87289999766623-8------69999999998618998799997588----8888899---------999999999841
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAIFRAIQKVK 94 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i~~ai~~~k 94 (293)
+++|+.|.++-|=. + .+++.+.++.+..|+++++|||.=+. .|++... ...+.+.++.+.
T Consensus 8 ~~~Va~itLnrP~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~i~ 87 (254)
T PRK06951 8 AAGVLTITFARPAKKNAITAAMYQTMADALAAAQDDAAVRAILIRGSDGIFSAGNDLEDFLKAPPKDEDAPVFQFLRQIS 87 (254)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 89999999748874689899999999999999866889179999879998768997598861876433328999999998
Q ss_pred -CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf -4786799603323322321000111000130135345556530210245677742042255315521123466678999
Q gi|254780747|r 95 -NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 (293)
Q Consensus 95 -~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e 173 (293)
..||+|+.+++.|..||.-++++||-+++.+++.++.-.+ ++|+-+. ....
T Consensus 88 ~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~----------------~g~~ 139 (254)
T PRK06951 88 SAPKPIVAAVCGPAVGIGTTMLLHCDLVYAADTAAFSLPFA------------QLGLCPE----------------AASS 139 (254)
T ss_pred HCCCCEEEEECCEEECCCHHHHHHCCCHHHCCCCCCCCHHH------------CCCCCCC----------------CCHH
T ss_conf 38999899986875144157766043012203670136653------------7304888----------------5399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 174 ~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
..+. .. +.... .+-+..|+.|+|++|+++|||+++...++..+.+.+++
T Consensus 140 --~~l~-----------~~------iG~~~a~ellltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a 189 (254)
T PRK06951 140 --LLLP-----------RL------AGYQRAAEKLLLGEPFDALEAHEIGLVNRVLPAAELDAFAAQQA 189 (254)
T ss_pred --HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf --9999-----------98------79999998877487546999998799416618679999999999
No 40
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.5e-09 Score=78.62 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=108.7
Q ss_pred CCCEEEEEEEEEEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHH------------HHHHHHHH
Q ss_conf 78728999976662386------99999999986189987999975888-----888899------------99999999
Q gi|254780747|r 34 NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAYA------------GEAIFRAI 90 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~~------------~~~i~~ai 90 (293)
-+++|+.|.++-|=.+. +++.+.++.+.+|++++.|||+=..+ |++... .....+.+
T Consensus 9 ~~~~va~ItlnrP~~Nal~~~m~~~l~~~l~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (258)
T PRK09076 9 IDGHVAILTLNNPPANTWTADSLQALKQLVLELNANKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAF 88 (258)
T ss_pred EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98999999977766266999999999999999962999559999658998640670277660478445899999999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
..+. .+||+|+.+++.|..||.-+|++||-+++.+++.++.-- -++|+-+. .+.
T Consensus 89 ~~l~~~~~pvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe------------~~~Gl~p~---------~g~---- 143 (258)
T PRK09076 89 EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPE------------ASVGLLPC---------AGG---- 143 (258)
T ss_pred HHHHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCCCCCH------------HEECCCCC---------CCH----
T ss_conf 99995899999998990764349998606755431565422612------------10166888---------668----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
-..+. ..+ ... ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus 144 -----~~~l~-----------r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 194 (258)
T PRK09076 144 -----TQNLP-----------WLV------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEARDAALALA 194 (258)
T ss_pred -----HHHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHH
T ss_conf -----99999-----------997------2999999986499682999987699023559007999999999
No 41
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=3.3e-09 Score=77.94 Aligned_cols=161 Identities=24% Similarity=0.319 Sum_probs=108.1
Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH---------HHH----HHHHH
Q ss_conf 872899997666238------6999999999861899879999758----888888999---------999----99999
Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG---------EAI----FRAIQ 91 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~---------~~i----~~ai~ 91 (293)
+++|+.|.++-|=.+ .+++.+.++.+.+|++++.|||+=+ |.|++.... ..+ .+.+.
T Consensus 9 ~~~ia~itlnrP~~Nal~~~~~~~l~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK07658 9 EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQQTFE 88 (257)
T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999718987899999999999999999878895699997899872289977887435664668999999999999
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293)
Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293)
.+. .+||||+.+.+.|..||.-++++||-++|.+++.++.- .-++|+-+. +
T Consensus 89 ~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------e~~~Gl~p~----------------~ 140 (257)
T PRK07658 89 RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLP------------ELNLGLIPG----------------F 140 (257)
T ss_pred HHHHCCCCEEEEECCHHHHCCHHHHHCCCEEEECCCCCCCCH------------HCCEEECCC----------------C
T ss_conf 999589989999767253142577532653431100404664------------216751787----------------4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.-. .. +...+-.+| ..+-+..|+.+++++|+++||||++...++..+...+.+
T Consensus 141 g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK07658 141 AGT--QR-----------LPRYVGKAK-----ALEMMLTSEPITGAEALKWGLVNGAFSEEELLDDAKKLA 193 (257)
T ss_pred CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf 579--99-----------999967999-----999997589898999997799567708689999999999
No 42
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=2.6e-09 Score=78.58 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=106.5
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHHHHHH-HH
Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999---------9999999-98
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAIFRAI-QK 92 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i~~ai-~~ 92 (293)
+++|+.|.++-+=. + .+++.+.++.+..|+.++.|||.=.. .|++.... ..-...+ ..
T Consensus 11 ~~~Va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (259)
T PRK06494 11 KGPITIVTLNRPEVMNALHSDAHFELEKVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKWQAAGGKRGWPESGFAGLTSR 90 (259)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999999737776789899999999999999863999359999758998157787767664224456526678999999
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 41478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293)
Q Consensus 93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293)
+...||+++.+++.|..+|..+|++||.+++.+.+.++.-- -++|+-+. .+.
T Consensus 91 ~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~g~------- 142 (259)
T PRK06494 91 FDLDKPIIAAVNGVAMGGGFEIALACDLIIAAENATFALPE------------PRVGLAAL---------AGG------- 142 (259)
T ss_pred HCCCCCEEEEECCEEEECCCEEEHHHCCCCCCCCCEEECHH------------HCCCCCCC---------CCH-------
T ss_conf 61999889997065862543000210105667783892746------------51488887---------309-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
-.. +...+ .... .+-+..|+.++|++|+++||||++...+++..++.+.+
T Consensus 143 --~~~-----------l~~~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (259)
T PRK06494 143 --LHR-----------LPRQI------GLKRAMGMILTGRHVTAREGLELGFVNEVVPAGEALAAAERWA 193 (259)
T ss_pred --HHH-----------HHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf --999-----------99997------2999999998399665999998699628878779999999999
No 43
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.9e-09 Score=78.28 Aligned_cols=164 Identities=21% Similarity=0.356 Sum_probs=107.4
Q ss_pred CCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------
Q ss_conf 67787289999766623-8------69999999998618998799997588----8888899------------------
Q gi|254780747|r 32 EDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------------ 82 (293)
Q Consensus 32 ~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------ 82 (293)
+.++++|+.|.++-|=. + .+++.+.++++.+|++++.|||.=.. .|++...
T Consensus 7 ~~~~~~Va~itlnRP~k~NAl~~~m~~el~~a~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (269)
T PRK05864 7 DHPRPEIALVTLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGSVPHVEGLTRPTYALR 86 (269)
T ss_pred EECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf 96679989999817132589899999999999998864899279999789998146856565045433344423567888
Q ss_pred -HHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf -999999999841-478679960332332232100011100013013534555653021024567774204225531552
Q gi|254780747|r 83 -GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 (293)
Q Consensus 83 -~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~ 160 (293)
.+.+.+.+..++ ..||||+.+++.|..||.-+|++||-+++.+++.++.-.+ ++|+.+-
T Consensus 87 ~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~cD~ria~~~A~f~~~~~------------~~Gl~~~------- 147 (269)
T PRK05864 87 SMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI------------NNGLTAS------- 147 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCEEEECCHHHHHCCCEEEECCCCEEECCCC------------CEEECCC-------
T ss_conf 999999999999858998899973857646357764177024358868955644------------7412578-------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 112346667899998877777666667789-9998514999889988734982378899877980623898999999997
Q gi|254780747|r 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFV-RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 (293)
Q Consensus 161 K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~-~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~ 239 (293)
+. .. .+++ ..|-.+| ..+-+..|+.++|++|+++|||+++...++..+.+.+
T Consensus 148 -~~-----G~----------------~~~L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~ 200 (269)
T PRK05864 148 -EL-----GL----------------SYLLPRAIGSSR-----AFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA 200 (269)
T ss_pred -CH-----HH----------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHHH
T ss_conf -41-----27----------------788899868999-----9999981991279999977973368871089999999
Q ss_pred HC
Q ss_conf 41
Q gi|254780747|r 240 LG 241 (293)
Q Consensus 240 ~~ 241 (293)
++
T Consensus 201 lA 202 (269)
T PRK05864 201 IA 202 (269)
T ss_pred HH
T ss_conf 99
No 44
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.2e-09 Score=78.96 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=107.7
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHH-------------HHHHHH
Q ss_conf 87289999766623-8------6999999999861899879999758-----888888999-------------999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS-----SPGGSAYAG-------------EAIFRA 89 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~~-------------~~i~~a 89 (293)
+++|++|.++-+-. + ..++.+.++.+.+|+++++|||.=. |.|+++... ..+.+.
T Consensus 15 ~~~v~~itLnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vVl~gag~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK06144 15 QGGIARITFNRPAARNAMTWAMYEGLAAICEEIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRV 94 (262)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999748875799999999999999999863899149999579986253476578761457704578999999999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+..+. ..||+|+.+++.|..||.-++++||-+++.+.+.++. |..+ .+|+-+
T Consensus 95 ~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ias~~a~f~~-------p~~~----~lG~~~---------------- 147 (262)
T PRK06144 95 LGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGF-------PIAR----TLGNCL---------------- 147 (262)
T ss_pred HHHHHHCCCCEEEEECCEEEECCCEEHHCCCEEEECCCCEEEC-------CEEE----ECCCCC----------------
T ss_conf 9999958998899975878607222011077767789978975-------4345----147777----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 78999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
....-. .+...+-.+| ..+-+..|+.+++++|+++||||++-..++..+++.+.+.
T Consensus 148 --~~~~~~-----------~l~~~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~ 203 (262)
T PRK06144 148 --SMSNLA-----------RLVALLGAAR-----VKDMLFTARLLEAEEALAAGLLNEVVPDAALDARADALAE 203 (262)
T ss_pred --CHHHHH-----------HHHHHHCHHH-----HHHHHHCCCEECHHHHHHCCCHHHCCCHHHHHHHHHHHHH
T ss_conf --714899-----------9999868999-----9999750887079999977984612490689999999999
No 45
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.4e-09 Score=78.72 Aligned_cols=159 Identities=22% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCEEEEEEEEEEE-----CC--HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH----------------H---
Q ss_conf 8728999976662-----38--6999999999861899879999758----888888999----------------9---
Q gi|254780747|r 35 SPHVARIAIRGQI-----ED--SQELIERIERISRDDSATALIVSLS----SPGGSAYAG----------------E--- 84 (293)
Q Consensus 35 ~~~i~~i~i~G~I-----~~--~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~----------------~--- 84 (293)
+++|+.|.++-|= .. .+++.+.++++.+|+.|+.|||+=+ |.|++.... .
T Consensus 12 ~~~Va~itlnrP~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (271)
T PRK06142 12 ADHVAQVTLNRPGKGNAMNPAFWSEIPEIFRWLDADPEVRAVVLSGAGKHFSYGIDLMAMAGVFGQLGKDGLGRNRTDLR 91 (271)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 99999999768887799899999999999999874889489998389986078768898733344333331125499999
Q ss_pred ----HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf ----9999999841-47867996033233223210001110001301353455565302102456777420422553155
Q gi|254780747|r 85 ----AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 (293)
Q Consensus 85 ----~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~ 159 (293)
++...+..+. .+||+|+.+++.|..||.-++++||-+++.+.+.++.-- -++|+-+.
T Consensus 92 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~~Gl~p~------ 153 (271)
T PRK06142 92 REILRLQASINAVADCRKPVLAAVQGWCIGGAVDLISACDMRYASADAKFSIRE------------IDLGMVAD------ 153 (271)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECCC------------CCCCCCCC------
T ss_conf 999999999999972899899998884440758999861512227985898950------------20344888------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH
Q ss_conf 2112346667899998877777666667789999851499988998-873498237889987798062389-89999999
Q gi|254780747|r 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237 (293)
Q Consensus 160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l 237 (293)
.+ .- .. +...| -..... -+..|+.+++++|++.||||++.. .++..+.+
T Consensus 154 ---~g-------~~--~~-----------l~~~i------G~~~a~~l~ltg~~i~A~eA~~~Glv~~vv~~~e~l~~~a 204 (271)
T PRK06142 154 ---VG-------TL--QR-----------LPRII------GDGHLRELAYTGRDIDAAEAEKIGLVNRVYDDAEALLAAA 204 (271)
T ss_pred ---CC-------HH--HH-----------HHHHH------CHHHHHHHHHHCCEECHHHHHHCCCCCEECCCHHHHHHHH
T ss_conf ---45-------99--99-----------99997------8999999983097615999998798406419889999999
Q ss_pred HHH
Q ss_conf 974
Q gi|254780747|r 238 YAL 240 (293)
Q Consensus 238 ~~~ 240 (293)
.+.
T Consensus 205 ~~~ 207 (271)
T PRK06142 205 HAT 207 (271)
T ss_pred HHH
T ss_conf 999
No 46
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.2e-09 Score=78.97 Aligned_cols=159 Identities=22% Similarity=0.282 Sum_probs=107.6
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHHH
Q ss_conf 87289999766623----8---69999999998618998799997588----8888899---------------999999
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~~ 88 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++++.|||.=+. .|+++.. ...+.+
T Consensus 11 ~~~ia~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (261)
T PRK05995 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD 90 (261)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999758676789899999999999999972999369999789984365767798875203782355667999999
Q ss_pred HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 999841-4786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r 89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293)
Q Consensus 89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293)
.+..++ ..||||+.+++.|..||.-++++||-+++.+.+.++.-.+ ++|+-+. .+.+
T Consensus 91 l~~~i~~~~kPvIaai~G~a~GgG~~Lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~~~~- 148 (261)
T PRK05995 91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV------------RLGLIPA---------TISP- 148 (261)
T ss_pred HHHHHHHCCCCEEEEECCEEEECCHHHHHHCCEEECCCCCEEECHHH------------HEEECCC---------CCHH-
T ss_conf 99999968998999978988604177765166530338857865264------------4534465---------1100-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 678999988777776666677899998514999889988-73498237889987798062389899999999741
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.+ . |-+......+ +..|+.+++++|+++||||++...++..++..+.+
T Consensus 149 ---------~l-----------~------~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~la 197 (261)
T PRK05995 149 ---------YV-----------I------RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPADALDAKVAELA 197 (261)
T ss_pred ---------HH-----------H------HCCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf ---------24-----------4------2015999999887489687999997798023568679999999999
No 47
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.09 E-value=2.4e-09 Score=78.78 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=105.0
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH--------------HHHHHH
Q ss_conf 87289999766623-8------69999999998618998799997588-----8888899--------------999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA--------------GEAIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~--------------~~~i~~ 88 (293)
+++|++|.++.|=. + .+++.+.++.+.+|++++.|||.=.. .|++... .+++..
T Consensus 9 ~~~va~ItlnRP~~~NAl~~~~~~~l~~al~~~~~d~~vr~vIltg~G~~~FcaG~D~~~~~~~~~~~~~~~~~~~~~~~ 88 (256)
T TIGR03210 9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHS 88 (256)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999737464689999999999999998733999629999679974110477532221475411233016999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99984147867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 89 ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+|++ .+||||+.+++.|..||.-++++||-+++.+++.++...+ ++|+-+.
T Consensus 89 ~i~~--~~kPvIaav~G~a~GgG~~lal~~D~~iA~~~a~f~~p~~------------~lG~~~~--------------- 139 (256)
T TIGR03210 89 AIRD--VPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP------------KVGSVDP--------------- 139 (256)
T ss_pred HHHH--CCCCEEEEECCEEEHHHHHHHHHHCCCCCCCCCEEECCCC------------EECCCCC---------------
T ss_conf 9984--8998999988866668699998524152347871777556------------1442078---------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 789999887777766666778999985149998899-887349823788998779806238989999999974
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293)
..- -..+ .|.+..... +-++.|+.+++++|+++|||+++...++....+.+.
T Consensus 140 -~~~--~~~l-----------------~r~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 192 (256)
T TIGR03210 140 -GYG--TALL-----------------ARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKW 192 (256)
T ss_pred -CCH--HHHH-----------------HHHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHH
T ss_conf -506--8999-----------------9852399999999919907699999869705342846999999999
No 48
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=3.3e-09 Score=77.88 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=107.0
Q ss_pred CCCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------H-------HHHH
Q ss_conf 677872899997666238------69999999998618998799997588----88888999------9-------9999
Q gi|254780747|r 32 EDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------E-------AIFR 88 (293)
Q Consensus 32 ~~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------~-------~i~~ 88 (293)
..+++.|+.|.++-|=.+ .+++.+.++.+.+|++|+.|||.=+. .|++.... + ...+
T Consensus 6 ~~~edGVa~ItlnrP~~NAl~~~m~~el~~~~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07938 6 TTPEPGIAEVTVDYPPVNALPSRGWFALADAITAAGRDPDTRVVILRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA 85 (249)
T ss_pred EECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 87369989999788877899999999999999998558992699997799972625767887537744567776525799
Q ss_pred HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 999841-4786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r 89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293)
Q Consensus 89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293)
.++.+. ..||||+.+++.|..||.-++++||-+++.+.+.+|. |+. ++|+ . +
T Consensus 86 ~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~-------pev-----~~G~---------~---g--- 138 (249)
T PRK07938 86 AFRAVYECPVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGL-------PEV-----DRGA---------L---G--- 138 (249)
T ss_pred HHHHHHHCCCCEEEEECCEEEEEEEEEEECCCHHHHCCCCEEEC-------CCC-----CCCC---------C---C---
T ss_conf 99999829998999975757661213120433444426877977-------565-----7511---------0---3---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6789999887777766666778999985149998899-8873498237889987798062389899999999741
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
. -..+ ...| ..... +-++.|+.++|++|+++|||+++...++..+.+.+.+
T Consensus 139 -----~-~~~L-----------~rlv------G~~~A~el~ltg~~i~A~eA~~~GLvn~vv~~~~l~~~a~~~A 190 (249)
T PRK07938 139 -----A-ATHL-----------SRLV------PQHLMRRLFFTAATIDAAELHHFGSVHEVVPRDELDEAALRVA 190 (249)
T ss_pred -----H-HHHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCHHEEECHHHHHHHHHHHH
T ss_conf -----7-7799-----------9982------6999999997298147999997797260308459999999999
No 49
>PRK07510 consensus
Probab=99.07 E-value=4.9e-09 Score=76.83 Aligned_cols=162 Identities=21% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------H
Q ss_conf 7872899997666238-------69999999998618998799997588----88888999------------------9
Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------E 84 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~ 84 (293)
-+++|++|.++-|=.. .+++.+.++++.+|+++++|||.=.. -|++.... .
T Consensus 11 ~~~~ia~itlnrP~~~NAl~~~m~~el~~~~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
T PRK07510 11 LDDGVLTITLNRPERRNALNDDLTRALVEAARRAADDPEVRAVLLTGAGGAFCAGGDVKSMAAARAAPPFEGAQRVANLR 90 (266)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999999975778789989999999999999986489945999978998605565789886144777632778999999
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 9999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293)
Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293)
...+.+..+. .+|||++.+++.|..||.-++++||-+++.+.+.++.- .-++|+.+.
T Consensus 91 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~---------- 148 (266)
T PRK07510 91 RRMEVSRLLHQMPKPTVAQIDGAAAGAGLSLALACDLRVAGASAKLTTA------------FAKVGLSGD---------- 148 (266)
T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHCCCCHHCCCCCEEECC------------CCCEECCCC----------
T ss_conf 9999999998399988999879776422567650460101544378457------------654302886----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+... .. +...|-.+| ..+-+..|+.++|++|+++|||+++...++..+.+.+++
T Consensus 149 ------~g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la 202 (266)
T PRK07510 149 ------FGGT--YF-----------LTRLVGPAK-----ARELYLTSPVLSAAEALALGLVNRVVPDAEVEAEARALA 202 (266)
T ss_pred ------CCHH--HH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ------3489--99-----------999962999-----999998299947999997797543458579999999999
No 50
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.06 E-value=4.6e-09 Score=76.97 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=106.7
Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------H----HHHHH
Q ss_conf 7872899997666238-------69999999998618998799997588----88888999---------9----99999
Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------E----AIFRA 89 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------~----~i~~a 89 (293)
.++.|++|.++-+=.- .+++.+.++.+.+|++++.|||.=+. .|+++... . .+.+.
T Consensus 16 ~~~~Va~ItlnRP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 95 (265)
T PRK08139 16 DRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRADPGLAYFRALFARCSRV 95 (265)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 77999999976887678989999999999999997589935999967998642787868975556778899999999999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+..+. ..||||+.+++.|..||.-+|++||-+++.+.+.+|.-.+ ++|+- |..
T Consensus 96 ~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ias~~a~f~~pe~------------~~Gl~--------------~~~ 149 (265)
T PRK08139 96 MQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGV------------NIGLF--------------CST 149 (265)
T ss_pred HHHHHHCCCCEEEEECCEEEEEECHHHCCCCEEEECCCCCCCCCCC------------EECCC--------------CCC
T ss_conf 9999859998999977823541401100476645326522038655------------36625--------------576
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
++.. + . |.+.... .+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus 150 ~~~~-----L-----------~------r~ig~~~a~~l~ltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a 201 (265)
T PRK08139 150 PMVA-----L-----------S------RNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA 201 (265)
T ss_pred CHHH-----H-----------H------CCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 2654-----4-----------0------1000888899986478406999998798047628779999999999
No 51
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=5.9e-09 Score=76.30 Aligned_cols=161 Identities=18% Similarity=0.275 Sum_probs=106.7
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHHH----------------
Q ss_conf 787289999766623-8------6999999999861899879999758----888888999999----------------
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEAI---------------- 86 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~i---------------- 86 (293)
.+++|++|.++-|-. + .+++.+.++++.+|+++++|||.=. |.|++......+
T Consensus 12 ~d~~Va~itlnrP~k~Nal~~~~~~eL~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (272)
T PRK06210 12 ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVG 91 (272)
T ss_pred ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 47988999974756268999999999999999997299907999978999665167779886068410000014557776
Q ss_pred ------HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf ------99999841-47867996033233223210001110001301353455565302102456777420422553155
Q gi|254780747|r 87 ------FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 (293)
Q Consensus 87 ------~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~ 159 (293)
......+. .+||+++.+++.|..||.-++++||-++|.+.+.++. +.. ++|+-+.
T Consensus 92 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~-------p~~-----~~Gl~p~------ 153 (272)
T PRK06210 92 NRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTT-------AFA-----RRGLIAE------ 153 (272)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEECCCEEEECCCCEEEC-------CCC-----CCCCCCC------
T ss_conf 5426789999999848998899982366048751221365434247757966-------745-----5276887------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 2112346667899998877777666667789999851499988-998873498237889987798062389899999999
Q gi|254780747|r 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
.+ .+ ..+. .. +-.. ..+-+..|+.++|++|+++|||+++...+++.+.+.
T Consensus 154 ---~g-----~~----~~l~-----------r~------iG~~~a~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 204 (272)
T PRK06210 154 ---HG-----IS----WILP-----------RL------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL 204 (272)
T ss_pred ---CC-----HH----HHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf ---32-----99----9999-----------98------76999999998499998899997798527538158999999
Q ss_pred HHC
Q ss_conf 741
Q gi|254780747|r 239 ALG 241 (293)
Q Consensus 239 ~~~ 241 (293)
+.+
T Consensus 205 ~~a 207 (272)
T PRK06210 205 AYA 207 (272)
T ss_pred HHH
T ss_conf 999
No 52
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.06 E-value=3.9e-09 Score=77.42 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=104.9
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------HH
Q ss_conf 87289999766623-8------69999999998618998799997588----88888999------------------99
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------EA 85 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~~ 85 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++|+.|||.=.. .|++.... ..
T Consensus 11 ~~gIa~ItlnrP~~~Nal~~~m~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (257)
T PRK07110 11 EEGIAQVTMQDRENKNAFSDELVRQLHGAFDTIAQDPRCKVVILTGYPNYFATGGTQEGLLSLSEGKGTFTDYKTNIEHE 90 (257)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 89989999738887899899999999999999976899169999889986525666788875441553114678889999
Q ss_pred HHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 99999984-14786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r 86 IFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293)
Q Consensus 86 i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293)
....++.+ ..+||||+.+++.|..||.-+|++||-+++.+.+.++. +. -++|+-+.
T Consensus 91 ~~~~~~~~~~~~kPvIaavnG~a~GgG~~lal~cD~ria~~~a~f~~-------pe-----~~lGl~p~----------- 147 (257)
T PRK07110 91 YANLYSLALNCPIPVIAAMQGHAIGGGFVMGLYADFVVLSEESVYTT-------NF-----MKYGFTPG----------- 147 (257)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC-----------
T ss_conf 99999999819998999978788577689973268789869977977-------50-----05675977-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 466678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
+. ....+ ...|-.++ ..+-+..|+.++|++|+++|||+++...++..++..+.+.
T Consensus 148 -----~g--~~~~l-----------~~~vG~~~-----a~~llltg~~i~a~eA~~~Glv~~vvp~~~l~~~a~~~A~ 202 (257)
T PRK07110 148 -----MG--ATAIL-----------PEKLGYYL-----GQEMLLTARSYRGAELQKRGVPFPVLPRAEVLEKALELAR 202 (257)
T ss_pred -----CC--HHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf -----43--99999-----------99866999-----9999984997689999974987467786389999999999
No 53
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=5.4e-09 Score=76.55 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=106.9
Q ss_pred CCCEEEEEEEEEEE-----CC---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------H-
Q ss_conf 78728999976662-----38---69999999998618998799997588----888889999---------------9-
Q gi|254780747|r 34 NSPHVARIAIRGQI-----ED---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------A- 85 (293)
Q Consensus 34 ~~~~i~~i~i~G~I-----~~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~- 85 (293)
.+++|+.|.++-|= .+ .+++.+.++.+.+|+.++.|||.=.. .|++..... .
T Consensus 9 ~~~~Va~itlnrP~~~Nal~~~~~~~el~~~l~~~~~d~~vrvvVitg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (266)
T PRK09245 9 RDGHIVTLTMNRPETRNALSGNDAVDALVAACARINADRSVRAVILTGAGTAFSSGGNVKDMRARAGAFGGSPADIRQGY 88 (266)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999975867467879999999999999988409982699997888704256568999753156667677899999
Q ss_pred ---HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf ---999999841-4786799603323322321000111000130135345556530210245677742042255315521
Q gi|254780747|r 86 ---IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 (293)
Q Consensus 86 ---i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K 161 (293)
+.+....+. .+||+|+.+++.|..||..++++||-+++.+.+.++. ++ -++|+-+.
T Consensus 89 ~~~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~va~~~a~f~~-------pe-----~~~Gi~p~-------- 148 (266)
T PRK09245 89 RRGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAE-------SF-----VKLGLIPG-------- 148 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC--------
T ss_conf 99999999999838998899982666253057776077545135757967-------40-----27655877--------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 12346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.... .. +...|-.+| ..+-+..|+.++|++|+++||||++...++..+.+.+.+
T Consensus 149 --------~g~~--~~-----------l~r~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~el~~~a~~~a 202 (266)
T PRK09245 149 --------DGGA--WL-----------LPRIIGMAR-----AAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA 202 (266)
T ss_pred --------CCHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH
T ss_conf --------6799--99-----------999974999-----999998199987999998798417508678999999999
No 54
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.06 E-value=9.1e-10 Score=81.42 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=104.7
Q ss_pred CCCCCEEEEEEEEEE-ECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HH
Q ss_conf 677872899997666-238------69999999998618998799997588----88888999---------------99
Q gi|254780747|r 32 EDNSPHVARIAIRGQ-IED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EA 85 (293)
Q Consensus 32 ~~~~~~i~~i~i~G~-I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~ 85 (293)
+.-++.|++|.++-+ -.+ .+++.+.++++..|+.+++|||.=.. .|++.... ..
T Consensus 11 ~~~~DGVA~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~AGaDl~e~~~~~~~~~~~~~~~~~~ 90 (715)
T PRK11730 11 DWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAVPEEELSQWLHF 90 (715)
T ss_pred EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99458889999638876789899999999999999850999759999789981572708787852546887889888888
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 999999841-4786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293)
Q Consensus 86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293)
....+.++. ..||||+.+++.|..||+-+|.+||..++.+.+.+|.--+ ++|+-+ +.+
T Consensus 91 ~~~~~~~ie~~~kPvIAAI~G~AlGgGlelALacd~Rias~~a~~g~pev------------~lGl~p---------g~G 149 (715)
T PRK11730 91 ANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPTARIGLPET------------KLGIMP---------GFG 149 (715)
T ss_pred HHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC------------CCCCCC---------CCC
T ss_conf 89999999719998899988884279899999689999639988978654------------757287---------984
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 46667899998877777666667789999851499988-998873498237889987798062389899999999
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
.. ..+- |-+-.. ..+-+..|+.+++++|+++||||++...++..+.+.
T Consensus 150 gt---------~rLp-----------------rliG~~~A~~l~l~G~~~~a~~A~~~GLvd~vv~~~~L~~~A~ 198 (715)
T PRK11730 150 GT---------VRLP-----------------RLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAAL 198 (715)
T ss_pred HH---------HHHH-----------------HHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHH
T ss_conf 25---------3754-----------------1326999973541179788999986898646258067899999
No 55
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.06 E-value=4.7e-09 Score=76.92 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH---------------HHHHHH
Q ss_conf 787289999766623----8---69999999998618998799997588----888889---------------999999
Q gi|254780747|r 34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY---------------AGEAIF 87 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~---------------~~~~i~ 87 (293)
..+.|+.|.++-|=. + ..++.+.++.+.+|++|++|||.=+. .|++.. ....+.
T Consensus 12 ~~~GVa~itLnRP~~~Nal~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (271)
T PRK05674 12 DPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELA 91 (271)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 49978999972878668989999999999999886589917999988999732787347665324566100267899999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.+..+. .+|||++.+++.|..||.-+|++||-+++.+++.++.-. . ++|+-+. .++
T Consensus 92 ~~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~pe-------~-----~lGl~p~---------~~~- 149 (271)
T PRK05674 92 ELMYALARLKIPTLAVVQGAAFGGALGLISCCDMAIGAEDAQFCLSE-------V-----RIGLAPA---------VIS- 149 (271)
T ss_pred HHHHHHHHCCCCEEEEECCHHHEHHHHHHHHCCEEECCCCCEEECCC-------C-----CEEECCC---------CHH-
T ss_conf 99999996899899997783002468887630622211156160545-------5-----4667456---------148-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 667899998877777666667789999851499988-998873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
..+...| ... ..+-+..|+.++|++|.++|||+++...++....+.+.+
T Consensus 150 --------------------~~l~~~i------G~~~A~~llltg~~~sA~eA~~~Glv~~vv~~~el~~~a~~~a 199 (271)
T PRK05674 150 --------------------PFVVKAI------GERAARRYALTAERFDGRRARELGLLAESYPAAELDAQVEAWI 199 (271)
T ss_pred --------------------HHHHHHH------HHHHHHHHHHHCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHH
T ss_conf --------------------7899996------3999999998489347999998799206857779999999999
No 56
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=4.9e-09 Score=76.80 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCEEEEEEEEEEE-C---C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-----------HHHHHHHHHH
Q ss_conf 8728999976662-3---8---6999999999861899879999758----88888899-----------9999999998
Q gi|254780747|r 35 SPHVARIAIRGQI-E---D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-----------GEAIFRAIQK 92 (293)
Q Consensus 35 ~~~i~~i~i~G~I-~---~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-----------~~~i~~ai~~ 92 (293)
+++|+.|.++-|= . + .+++.+.++.+.+|+.+++|||.=. |-|++... ..++.+.+..
T Consensus 10 ~~~va~ItlNrPek~Nals~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (248)
T PRK06023 10 KGAVQVIRFNRPEKKNAITRAMYAAMAKALKAGDADDAIRAHVFLGVPGAFSSGNDMQDFMAAAMGGTSFGSEILDFLIA 89 (248)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999748888899899999999999999854899369999789986608988688864123551457999999999
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
+. ..|||++.++++|..||.-++++||-+++.+.+.++.-. -++|+-+. +.
T Consensus 90 l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p~------------~~~Gl~p~----------------~g 141 (248)
T PRK06023 90 LAETEKPIVSGVDGLAIGIGTTIHLHCDLTFATPRSLFRTPF------------VDLGLVPE----------------AG 141 (248)
T ss_pred HHHCCCCEEEEEECEEEHHHHHHHHCCCEEEECCCCEEECHH------------CCEEECCC----------------CC
T ss_conf 995899899998153301468997234645634786382320------------26734876----------------52
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
- -..+. .. +.... .+-+..|+.|+|++|+++|||+++...++..+.+.+.+
T Consensus 142 ~--~~~l~-----------r~------iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A 193 (248)
T PRK06023 142 S--SLLAP-----------RL------MGHQRAFALLALGEGFSAEAAQEAGLIYKIVDEEALEAEVLKAA 193 (248)
T ss_pred H--HHHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf 9--99999-----------99------74999999998399410999816899133358689999999999
No 57
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=6.2e-09 Score=76.17 Aligned_cols=161 Identities=25% Similarity=0.298 Sum_probs=108.0
Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH
Q ss_conf 872899997666238-------69999999998618998799997588----88888999----------9999999984
Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV 93 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~ 93 (293)
++.|+.|.++-+=.. .+++.+.++.+.+|++++.|||.=+. .|++.... .++...+..+
T Consensus 11 ~~~Ia~itlnrp~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l 90 (257)
T PRK05862 11 RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKV 90 (257)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999758998789899999999999999985999359999889983146878577435661557777799999999
Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293)
Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293)
+ .+||||+.+++.|..||.-++++||-+++.+.+.++.- .-++|+-+. +..
T Consensus 91 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~~Gl~p~----------------~g~ 142 (257)
T PRK05862 91 ARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQP------------EIKLGVLPG----------------MGG 142 (257)
T ss_pred HHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECH------------HHCCCCCCC----------------CCH
T ss_conf 8589998999768860424588773453130478637154------------420466888----------------459
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
. ..+ ...|-.+| ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus 143 ~--~~l-----------~r~iG~~~-----a~~llltg~~~~a~ea~~~Glv~~v~~~~~l~~~a~~~a 193 (257)
T PRK05862 143 S--QRL-----------TRAVGKAK-----AMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257)
T ss_pred H--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 9--999-----------99987999-----999998289986999998799147638458999999999
No 58
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=3e-09 Score=78.16 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=105.4
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH----------HHHHHHHHHHHH
Q ss_conf 87289999766623----8---69999999998618998799997588----888889----------999999999984
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY----------AGEAIFRAIQKV 93 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~----------~~~~i~~ai~~~ 93 (293)
+++|+.|.++-|=. + .+++.+.++.+.+|+.++.|||.=.. -|++.. ......+.+..+
T Consensus 11 ~~~Va~ItlnRP~~~Nal~~~m~~el~~al~~~~~d~~vrvvVltg~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (258)
T PRK06190 11 HDRVRTLTLNRPQARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGLAYGAADALPDIVPAW 90 (258)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999758998899899999999999998865899369999789987528879788704641013566688999999
Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293)
Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293)
. ..||+++.+++.|..||.-++++||-+++.+++.++.-- -++|+-+. . ..+
T Consensus 91 ~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~~- 143 (258)
T PRK06190 91 PAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTH------------ARVGILPG---------W-----GLS- 143 (258)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCEEECCC------------CCCCCCCC---------C-----CHH-
T ss_conf 96899999997770304438987247668855981897852------------21287998---------6-----599-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
. .+...| .... .+-+..|+.++|++|++.|||+++...++..++..+.+
T Consensus 144 ---~-----------~L~r~v------G~~~A~ellltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A 193 (258)
T PRK06190 144 ---V-----------RLPQKV------GIGRARRMSLTGNFLDAEDALRAGLVTEVVPHDELLPAARRLA 193 (258)
T ss_pred ---H-----------HHHHHH------CHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ---9-----------999997------9999999998099985999997797434508569999999999
No 59
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=7.1e-09 Score=75.82 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=105.8
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHH-------
Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999---------999-------
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAI------- 86 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i------- 86 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++++.|||.=.. .|+++... ...
T Consensus 10 ~~~va~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~ir~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (260)
T PRK05980 10 RDGIALLTLNRPEKLNALSYALIDRLMARLDAIEVDESVRAVILTGAGERAFSAGADIHEFSASVAAGPDVALRDFVRRG 89 (260)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999737675799999999999999999862999339999669983443576767641210147247899999999
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293)
Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293)
.+.+..+. ..||+|+.+++.|..||.-++++||-+++.+.+.++.-- -++|+-+.
T Consensus 90 ~~~~~~l~~~~kPvIa~v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~------------ 145 (260)
T PRK05980 90 QTMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERARFAKPE------------IKLAMPPT------------ 145 (260)
T ss_pred HHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCCCCCCEECCCC------------CCEEECCC------------
T ss_conf 999999997899989997788877753544204130147778353752------------51753877------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 66678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+.-. ..+ ... +-... .+-+..|+.++|++|.++||||++...+++.+++.+++
T Consensus 146 ----~g~~--~~l-----------~r~------iG~~~A~~~~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 199 (260)
T PRK05980 146 ----FGGT--QRL-----------PRL------AGRKRALELLLTGDAFSAQRALEIGLVNAVVPHDELIPAARALA 199 (260)
T ss_pred ----CCHH--HHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ----3679--999-----------999------64999999998099868999987699716528668999999999
No 60
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.04 E-value=5.5e-09 Score=76.51 Aligned_cols=161 Identities=21% Similarity=0.246 Sum_probs=107.9
Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH-----------HHHHHHHH
Q ss_conf 872899997666238------69999999998618998799997588-----888889999-----------99999998
Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE-----------AIFRAIQK 92 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~-----------~i~~ai~~ 92 (293)
+++|+.|.++-|=.+ .+++.+.++.+.+|++++.|||.=.. .|++..... .....+.+
T Consensus 11 ~g~Va~itlnrP~~NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK03580 11 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTE 90 (262)
T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999558764779999999999999998619996599996699960426710766534786431342667899999
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
+. ..||||+.+++.|..||.-+|++||-+++.+.+.++.-.+ ++|+-+. ..
T Consensus 91 l~~~~kPvIaaV~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~lGl~p~----------------~g 142 (262)
T PRK03580 91 IFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVPD----------------SG 142 (262)
T ss_pred HHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCEECHHH------------CCCCCCC----------------CC
T ss_conf 9819999999986866618699988527024147876515776------------0367888----------------54
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
- .. .+...|-.+| ..+-+..|+.+++++|+++|||+++...++..+.+.+++
T Consensus 143 ~--~~-----------~l~r~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la 194 (262)
T PRK03580 143 G--VL-----------RLPKRLPPAI-----VNEMLMTGRRMDAEEALRWGLVNRVVSQAELMDRARELA 194 (262)
T ss_pred H--HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf 9--99-----------9999970999-----999987189875999988799105438469999999999
No 61
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=1e-08 Score=74.87 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=110.2
Q ss_pred CCCCCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH------------HHH
Q ss_conf 5567787289999766623----8---6999999999861899879999758-----88888899------------999
Q gi|254780747|r 30 HVEDNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS-----SPGGSAYA------------GEA 85 (293)
Q Consensus 30 ~~~~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~------------~~~ 85 (293)
.....++.|+.|.++-|=. + .+++.+.++.+.+|++++.|||.=+ |.|+++.. ...
T Consensus 11 ~v~~~e~gVa~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvvVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (260)
T PRK06143 11 GVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR 90 (260)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHH
T ss_conf 48980898899997589887999999999999999988538995599996588776348856798861596568999999
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 999999841-4786799603323322321000111000130135345556530210245677742042255315521123
Q gi|254780747|r 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293)
Q Consensus 86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293)
+++.+..++ .+||+|+.+++.|..||.-++++||-+++.+++.++. +. -++|| +. .
T Consensus 91 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~-------pe-----~~~Gi-p~---------~- 147 (260)
T PRK06143 91 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGM-------PE-----VRVGI-PS---------V- 147 (260)
T ss_pred HHHHHHHHHHCCCCEEEEECCEEECCCHHHHHCCCEEEECCCCCEEC-------CC-----CCCCC-CC---------C-
T ss_conf 99999999948998899987961104257664477653223652317-------10-----15575-88---------6-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 46667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.. ...+ ...+-.+| ..+-+..|+.++|++|+++||||++...++...++.+.+
T Consensus 148 -----~~---~~~l-----------~r~iG~~~-----A~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A 200 (260)
T PRK06143 148 -----IH---AALL-----------PRLIGWAR-----TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA 200 (260)
T ss_pred -----CH---HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf -----38---9999-----------99987999-----999998599888999998496143518579999999999
No 62
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.04 E-value=5.8e-09 Score=76.36 Aligned_cols=161 Identities=17% Similarity=0.255 Sum_probs=105.9
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHH-----
Q ss_conf 87289999766623----8---69999999998618998799997588----88888999------------999-----
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAI----- 86 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i----- 86 (293)
++.|+.|.++-|=. + .+++.+.++.+.+|++++.|||.=.. .|++.... ...
T Consensus 16 ~~~Va~itlnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~e~~~~~~~~~~~~~~~~~~~~~ 95 (277)
T PRK09120 16 EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDELEFDDDAGVLVLTGEGEAWTAGMDLKEYFRETDAQPEILQEKIRRESS 95 (277)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999778776789999999999999999972999559999889997246868899852144663356899999876
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234
Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293)
Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293)
...++.++ ..|||++.+++.|..||.-++++||-+++.+.+.+|.-- -++|+-+. .+
T Consensus 96 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~lalacDi~ia~~~A~f~~pe------------~~~Gl~p~---------~g- 153 (277)
T PRK09120 96 GWQWRRLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSE------------INWGIPPG---------GL- 153 (277)
T ss_pred HHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHHHHHHHCCCCEEECCC------------CCCCCCCC---------CC-
T ss_conf 899999971899999998884540779999975111105582895772------------03587888---------66-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.+ ..+...|-..| ..+-+..|+.+++++|+++|||+++...++..+...+++
T Consensus 154 ----~~---------------~~l~r~vG~~~-----A~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~lA 205 (277)
T PRK09120 154 ----VS---------------KAMADTVGHRD-----ALYYIMTGETFDGRKAAEMGLVNESVPLAQLRARVRELA 205 (277)
T ss_pred ----HH---------------HHHHHHHCHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ----89---------------99999969799-----999986389377999998799505608889999999999
No 63
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.04 E-value=2.6e-09 Score=78.57 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=106.8
Q ss_pred CCCCCCEEEEEEEEEE--ECC------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH---------H----H
Q ss_conf 5677872899997666--238------6999999999861899879999758-----88888899---------9----9
Q gi|254780747|r 31 VEDNSPHVARIAIRGQ--IED------SQELIERIERISRDDSATALIVSLS-----SPGGSAYA---------G----E 84 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~--I~~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~---------~----~ 84 (293)
.+..++.|++|.++-+ -.+ .+++.+.++++..|++|++|||.-. +.|++... . .
T Consensus 9 ~~~~~dgIa~itlnrP~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~ 88 (706)
T PRK11154 9 LNVRLDNIAILTIDVPGEKMNTLKAEFAEQVRAILKQIKEDKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88 (706)
T ss_pred EEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHH
T ss_conf 99867998999989999776789999999999999998509996699995179980470729776724787577999998
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 9999999841-478679960332332232100011100013013--5345556530210245677742042255315521
Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 (293)
Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s--~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K 161 (293)
..+..+.++. ..||||+.+++.|..||+-+|.+||..++.+++ .+|.--+ ++|+-+
T Consensus 89 ~~~~~~~~i~~~~kPvIAAvnG~a~GgG~ElaLacD~RiAs~~a~~~~g~Pev------------~lGl~P--------- 147 (706)
T PRK11154 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP--------- 147 (706)
T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCC------------EECCCC---------
T ss_conf 88999999980999889998786418999999968999961784632136431------------027788---------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12346667899998877777666667789999851499988-99887349823788998779806238989999999974
Q gi|254780747|r 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293)
Q Consensus 162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293)
..+-. ..+- |-+-.. ..+-+..|+.+++++|+++||||++...++.++.+.+.
T Consensus 148 g~Ggt---------~rLp-----------------RliG~~~A~eliltG~~i~A~eA~~~GLVd~VVp~~~L~~~A~~~ 201 (706)
T PRK11154 148 GSGGT---------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLEVAVEL 201 (706)
T ss_pred CCCCH---------HHCC-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf 99724---------0221-----------------123899999764007878899999779875515908999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780747|r 241 G 241 (293)
Q Consensus 241 ~ 241 (293)
+
T Consensus 202 a 202 (706)
T PRK11154 202 A 202 (706)
T ss_pred H
T ss_conf 9
No 64
>PRK07629 consensus
Probab=99.04 E-value=7.3e-09 Score=75.72 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=107.0
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH
Q ss_conf 787289999766623-8------69999999998618998799997588----88888999---------------9999
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF 87 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~ 87 (293)
-++.|+.|.++-|=. + .+++.+.++.+.+|++++.|||.=.. .|++.... ..+.
T Consensus 10 ~~~~va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vrvvvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (261)
T PRK07629 10 QAGRVATVTLNRPDVRNAFNETMIAELTAAFRALDADDDVRAVVLAARGPAFCAGADLNWMKRMAGYSDDENRADARKLA 89 (261)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999976847568979999999999999996299916999977998214676708888511367255677799999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.+..+. ..||||+.+++.|..||.-+|++||-+++.+.+.++.-- -++|+-+. .+.
T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p~------------~~~Gl~p~---------~~~- 147 (261)
T PRK07629 90 RMLRTIYECPKPTIARVHGDAYAGGMGLVAACDIAVAADTAKFCLSE------------VRLGLIPA---------TIS- 147 (261)
T ss_pred HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECHH------------CCCCCCCC---------CHH-
T ss_conf 99999995899899997895443607997733421314787575510------------34461777---------558-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
..+...| .... .+-+..|+.|++++|+++|||+++...++..++..+.+
T Consensus 148 --------------------~~~~r~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 197 (261)
T PRK07629 148 --------------------PYVIRAM------GERAARRYFLTAERFDAAEALRLGFVHEVVPADALDAKVAELA 197 (261)
T ss_pred --------------------HHHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf --------------------8999997------8999999998687226999997798618738679999999999
No 65
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.04 E-value=8.4e-09 Score=75.33 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=108.3
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH--------HHH----HHHH
Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999--------999----9999
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG--------EAI----FRAI 90 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~--------~~i----~~ai 90 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|+.+++|||+=+. .|++.... ... .+.+
T Consensus 11 ~~~va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vr~vvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK05809 11 EGNIAVVTINRPKALNALNSETLKELDTVLDDLENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF 90 (260)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999758987789799999999999999986899569999668988740799747653068767899999999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
..++ ..||+|+.+++.|..||.-++++||-+++.+.+.++.-. -++|+.+.
T Consensus 91 ~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------------- 142 (260)
T PRK05809 91 RRLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPE------------VGLGITPG---------------- 142 (260)
T ss_pred HHHHHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HCCCCCCC----------------
T ss_conf 99983899889997596666502765420134515897286520------------02345887----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 89999887777766666778999985149998899-88734982378899877980623898999999997418
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
+.- ... +... +..... +-+..|+.|++++|+++||||++...+++.+.+.+++.
T Consensus 143 ~g~--~~~-----------l~~~------iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~ 197 (260)
T PRK05809 143 FGG--TQR-----------LARI------VGPGKAKELIYTGDMIKAEEALRIGLVNKVVEPEKLMEEAKALAN 197 (260)
T ss_pred CCH--HHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf 448--999-----------9998------599999999970982579999987997087484689999999999
No 66
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.03 E-value=9.1e-09 Score=75.12 Aligned_cols=160 Identities=24% Similarity=0.301 Sum_probs=108.4
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHHHHHH
Q ss_conf 87289999766623-8------6999999999861899879999758----88888899--------------9999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEAIFRA 89 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~i~~a 89 (293)
.+.|++|.++-+-. + .+++.+.++.+.+|+++++|+|.=+ |.|++... .+.+.+.
T Consensus 6 ~~~i~~i~ln~p~~~Nal~~~~~~~l~~~~~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T cd06558 6 DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQEL 85 (195)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999858886799899999999999999974999579999749987047997588872666668899999999999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+..+. .+||+++.+++.|..+|..++++||.+++.+.+.++.-.+ ++|+.+.
T Consensus 86 ~~~i~~~~kPvIaai~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~G~~p~--------------- 138 (195)
T cd06558 86 LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV------------KLGLVPG--------------- 138 (195)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCEEECCHH------------CCCCCCC---------------
T ss_conf 9999978999999868852777506466188899808985746621------------1433887---------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+ -.-.. +... +.... .+-+..|+.+++++|++.||||++...+++.+.+.+.+
T Consensus 139 -~--~~~~~-----------l~~~------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 192 (195)
T cd06558 139 -G--GGTQR-----------LPRL------VGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192 (195)
T ss_pred -C--HHHHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH
T ss_conf -2--19999-----------9998------59999999997398577999997696206857879999999999
No 67
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.03 E-value=1.2e-08 Score=74.31 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHHHHH
Q ss_conf 787289999766623----8---69999999998618998799997588----8888899------------99999999
Q gi|254780747|r 34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIFRAI 90 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~~ai 90 (293)
-++.|+.|.++-|=. + .+++.+.++.+.+|+.+++|||.=.. .|++... ...+++.+
T Consensus 9 ~~~~Va~itlnrP~k~Nal~~~m~~eL~~al~~~~~d~~vr~vvltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T PRK05870 9 VDDHVALITVNDPDRRNAVTDEMSAQLRAAVQAAEADPDVHALVVTGAGKAFCAGADLTALGAAVGGPAEDGLRRVYDGF 88 (254)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999974788689989999999999999986199956999987998257278468876054642789999999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
..+. ..||+++.+++.|..||.-++++||-+++.+++.++. ++ -++|+.+. .+.
T Consensus 89 ~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~-------p~-----~~lGl~p~---------~g~---- 143 (254)
T PRK05870 89 MAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPAALFDP-------RF-----QKLGLHPG---------GGA---- 143 (254)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC---------CCH----
T ss_conf 999968999999987714656716664176899859978835-------20-----27720888---------788----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHCCCC
Q ss_conf 899998877777666667789999851499988998873498237889987798062389--899999999741877
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALGVDQ 244 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~~~~ 244 (293)
-.. +...|-.+| ..+-+..|+.+++++|+++|||+++.. ..++.+.+.+++..+
T Consensus 144 -----~~~-----------L~r~iG~~~-----A~ellltg~~i~A~eA~~~Glv~~Vv~d~~~~a~~lA~~ia~~p 199 (254)
T PRK05870 144 -----TWM-----------LQRAVGPQV-----ARAALLFGMRFDAEEAVRHGLALMVADDPVAAALELAAGPAAAP 199 (254)
T ss_pred -----HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCC
T ss_conf -----999-----------999970999-----99999939988699999869986677855899999999998579
No 68
>PRK07396 naphthoate synthase; Validated
Probab=99.02 E-value=2.8e-09 Score=78.37 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=104.1
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH-----------HH--HHHHH
Q ss_conf 87289999766623-8------69999999998618998799997588-----8888899-----------99--99999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA-----------GE--AIFRA 89 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~-----------~~--~i~~a 89 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++++.|||.=.. .|++... .. .+.+.
T Consensus 20 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~ 99 (273)
T PRK07396 20 SDGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGDGGYVDDDGVPRLNVLDL 99 (273)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 89999999678665799999999999999999850998269999789985042587645422456678420103208999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
.+.++ ..||||+.+++.|..||.-+|++||-+++.+++.+|.... ++|+-.. .
T Consensus 100 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~A~f~~~~~------------~~G~~~~---------~----- 153 (273)
T PRK07396 100 QRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP------------KVGSFDG---------G----- 153 (273)
T ss_pred HHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCEECCCCEEECCCC------------CCCCCCC---------C-----
T ss_conf 9999829999999985877607699998528012237988977665------------1470677---------3-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 7899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.. -.. +...|-..| ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus 154 -~g---~~~-----------L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~A 206 (273)
T PRK07396 154 -YG---ASY-----------LARIVGQKK-----AREIWFLCRQYNAQEALDMGLVNTVVPLEDLEKETVRWC 206 (273)
T ss_pred -CH---HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf -25---789-----------999856999-----999998289877999997798113558768999999999
No 69
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=1.1e-08 Score=74.62 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=102.7
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCC-CCCEEEEECC----CCCCCHHHH--------------HH---
Q ss_conf 87289999766623-8------699999999986189-9879999758----888888999--------------99---
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDD-SATALIVSLS----SPGGSAYAG--------------EA--- 85 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~-~ik~ivL~i~----SpGG~~~~~--------------~~--- 85 (293)
+++|+.|.++-+=. + ..++.+.++++.+|+ .+++|||+-. |.|++.... ..
T Consensus 11 ~~~ia~ItlnrP~~~Nal~~~m~~el~~al~~~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (266)
T PRK05981 11 DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDKKAEVRCLVITGAGRGFCTGANLQGRGSGNKMSQSGKDAGAALET 90 (266)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99999999747887899999999999999999983999879999988998722775366540122112234036899999
Q ss_pred -HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf -999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r 86 -IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293)
Q Consensus 86 -i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293)
....+.+++ .+||||+.+++.|..||.-++++||.+++.+++.++.- .-++|+-+. .
T Consensus 91 ~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~ias~~a~f~~~------------~~~lGl~p~---------~ 149 (266)
T PRK05981 91 AYHPFLRRLRNLHCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQA------------FRRIGLVPD---------G 149 (266)
T ss_pred HHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHCCCCCCCCCCCEEECC------------CCCEEECCC---------C
T ss_conf 9999999999589998999807663263677630640565788789756------------656601787---------6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3466678999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+. - ..+. ..+ -... .+-+..|+.+++++|+++|||+++...++..+++.+.+
T Consensus 150 g~-------~--~~l~-----------r~i------G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A 202 (266)
T PRK05981 150 GS-------T--WLLP-----------RLV------GKARAMELSLLGEKLPAETALEWGLVNRVYDDAELMAEAMKLA 202 (266)
T ss_pred CH-------H--HHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf 39-------9--9999-----------986------6999999998299875999997798126708579999999999
No 70
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=1.1e-08 Score=74.63 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=104.8
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHH
Q ss_conf 87289999766623----8---6999999999861899879999758----888888999------------99999999
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQ 91 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~ 91 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++++.|||.=+ |.|++.... ..+.+.+.
T Consensus 11 ~~~ia~ItlnrP~~~Nal~~~m~~~l~~~~~~~~~d~~vrvvil~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK07260 11 VDDLATLTLNRPEVSNGFNIPMCQEILEALALAKEDTSVRFLLINAVGKVFSVGGDLVEMKRAVAKDDVQSLVKIAELVN 90 (260)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999737464689999999999999999976899179999789998889768888873225641678999999999
Q ss_pred ----HH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf ----84-1478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 92 ----KV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 92 ----~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
.+ +..||||+.+++.|..||..++++||-+++.+.+.++. +. -|+|+-+. .+.
T Consensus 91 ~~~~~~~~~~kPvIaav~G~a~GgG~~la~~~D~~ia~~~a~f~~-------pe-----~~~Gl~p~---------~g~- 148 (260)
T PRK07260 91 EISFAIKQLPKPVIMCVDGAVAGAAANIAVAADFCIASTKTKFIQ-------AF-----VGVGLAPD---------AGG- 148 (260)
T ss_pred HHHHHHHHCCCCEEEEECCEECCCHHHHHHHHCCCCCCCCCEEEC-------CC-----CCCCCCCC---------CCH-
T ss_conf 999999848999899976854011758988605222356877955-------76-----68612888---------559-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
... +...|-.+| ..+-+..|+.++|++|+++|||+++...++..+.+.+.+
T Consensus 149 --------~~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~e~l~~~a~~~a 199 (260)
T PRK07260 149 --------LFL-----------LTRAIGLNR-----ATHLAMTGEGLTAEKALDYGIVYRVAESEKLEKTCLQLL 199 (260)
T ss_pred --------HHH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf --------999-----------999975999-----999998199715999987797134558779999999999
No 71
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=5.6e-09 Score=76.47 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH--------HH-HHHHH--
Q ss_conf 787289999766623-8------69999999998618998799997588----888889999--------99-99999--
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE--------AI-FRAIQ-- 91 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~--------~i-~~ai~-- 91 (293)
.+++|+.|.++-|=. + .+++.+.++.+..|++|+.|||.=+. .|++..... .. ...+.
T Consensus 5 ~~g~Va~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK06563 5 RRGHLLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPW 84 (255)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 88999999964887568999999999999999986399944999976898740565788874321253033566665399
Q ss_pred --H-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf --8-4147867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 92 --K-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 92 --~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
. ..-.||||+.+++.|..||.-++++||.+++.+.+.+|.-.+ ++|+-+.
T Consensus 85 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ias~~a~f~~pe~------------~~Gi~p~--------------- 137 (255)
T PRK06563 85 GTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAAENTRFAQLEV------------QRGILPF--------------- 137 (255)
T ss_pred HHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEECCCCCEEECCHH------------CCCCCCC---------------
T ss_conf 9876407999899985887608699998426423469983536201------------0561887---------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.. . ... +... +.... .+-+..|+.|++++|+++||||++...++..+.+.+.+
T Consensus 138 -~g-~-~~~-----------l~r~------iG~~~a~el~ltg~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a 191 (255)
T PRK06563 138 -GG-A-TLR-----------FPRA------AGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLDRAIELA 191 (255)
T ss_pred -CC-H-HHH-----------HHHH------HCHHHHHHHHHCCCEECHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf -40-9-999-----------9999------78999999875098645999997797006658118999999999
No 72
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=1.5e-08 Score=73.83 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=103.1
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH-------------------
Q ss_conf 87289999766623----8---69999999998618998799997588----888889999-------------------
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE------------------- 84 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~------------------- 84 (293)
+++|+.|.++-|=. + .+++.+.++.+.+|++|++|||.=+. .|++.....
T Consensus 10 ~~~va~itlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T PRK07509 10 EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPKNAVKLLFKRLPGNAN 89 (262)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999758877799899999999999999975899569999889984234667898843881046789886044568
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 9999999841-478679960332332232100011100013013534555653021024567774204225531552112
Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293)
Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293)
........++ .+|||++.+++.|..||.-+|++||-.++.+++.++.- . -++|+-+. .
T Consensus 90 ~~~~~~~~~~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~p-------e-----~~~Gl~p~---------~ 148 (262)
T PRK07509 90 LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIM-------E-----AKWGLVPD---------M 148 (262)
T ss_pred HHHHHHHHHHHCCCCEEEEEECEEEECCCEEECCCCEEEECCCCEEECC-------C-----CCCCCCCC---------C
T ss_conf 9999999986099988999807688864021114655563698689565-------3-----04168988---------5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHC
Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389--899999999741
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALG 241 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~ 241 (293)
+. . . .+...|-.+| ..+-+..|+.++|++|++.|||+++.. ++++.+.+.++.
T Consensus 149 g~-------~--~-----------~l~~~vG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~v~e~~~~~a~~~A~~i~ 203 (262)
T PRK07509 149 AG-------T--V-----------SLRGLVRKDV-----ARELTYTARVFSAEEALELGLVTHVSDDPLAAAQALAREIA 203 (262)
T ss_pred CH-------H--H-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 59-------9--9-----------9999999999-----99999708957399998889950367107999999999998
No 73
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=5.7e-09 Score=76.40 Aligned_cols=160 Identities=24% Similarity=0.354 Sum_probs=103.2
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHH----
Q ss_conf 87289999766623-8------6999999999861899879999758----88888899--------------999----
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEA---- 85 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~---- 85 (293)
+++|+.|.++-|=. + .+++.+.++.+.+|++|++|||.=+ |.|++... .+.
T Consensus 11 ~~~Va~ItLnRPe~~NAl~~~m~~el~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (293)
T PRK08260 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDDVRAVIVTGAGRAFCAGADLSSGGNTFDLDGLVPRLEDDRADL 90 (293)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCEECCCCCCCCCHHHHCCCCHHHHHHH
T ss_conf 99999999748776789899999999999999964899069999889998665607622123233022112222355542
Q ss_pred ----HH----HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEE
Q ss_conf ----99----999984-147867996033233223210001110001301353455565302102456777420422553
Q gi|254780747|r 86 ----IF----RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 (293)
Q Consensus 86 ----i~----~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~ 156 (293)
++ +...++ +..||||+.+++.|..||.-+|++||-+++.+.+.+|.- .-++|+-+.
T Consensus 91 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~~------------~~~~Gl~p~--- 155 (293)
T PRK08260 91 SDPGVRDGGGRVTLRIFDCLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFV------------FGRRGIVPE--- 155 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHCCCCCCCCCCCEEECC------------CCCCCCCCC---
T ss_conf 01777767779999998489988999889851265898760360010247887366------------656156877---
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 1552112346667899998877777666667789999851499988-998873498237889987798062389899999
Q gi|254780747|r 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293)
Q Consensus 157 ~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293)
.+.. ..+. ..| ... ..+-+..|+.++|++|+++|||+++...++..+
T Consensus 156 ------~g~~---------~~L~-----------rlv------G~~~A~el~ltG~~i~A~eA~~~GlV~~vv~~~~l~~ 203 (293)
T PRK08260 156 ------AASS---------WFLP-----------RLV------GISTALEWVYSGRVFDAQEALDGGLVRSVHPPDDLLD 203 (293)
T ss_pred ------CCHH---------HHHH-----------HHH------CHHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHH
T ss_conf ------5399---------9999-----------997------9999999997589466999987795456758178999
Q ss_pred HHHHHC
Q ss_conf 999741
Q gi|254780747|r 236 SLYALG 241 (293)
Q Consensus 236 ~l~~~~ 241 (293)
...+.+
T Consensus 204 ~a~~~A 209 (293)
T PRK08260 204 AARALA 209 (293)
T ss_pred HHHHHH
T ss_conf 999999
No 74
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=7.9e-09 Score=75.52 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=104.8
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------HHHH
Q ss_conf 87289999766623----8---69999999998618998799997588----888889999---------------9999
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------AIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~i~~ 88 (293)
+++|++|.++-+=. + ..++.+.++.+.+|+++++|||.=.. .|++..... ...+
T Consensus 12 ~g~va~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (263)
T PRK07799 12 RGHTLIVTMNRPEARNALSTEMLAIMVDAWDRVDNDPDIRSCILTGAGGYFCAGMDLKAATQKPPGDSFKDGSYDPSRID 91 (263)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHCCHHHHH
T ss_conf 89999999758887899899999999999999861999279999888982535866688750685124554110278999
Q ss_pred HHHH-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 9998-414786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r 89 AIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293)
Q Consensus 89 ai~~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293)
.+.+ ....||+|+.+++.|..||.-++++||-+++.+.+.++.--+ ++|+-+. .+
T Consensus 92 ~~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~lGi~p~---------~g--- 147 (263)
T PRK07799 92 ALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA------------KWSLYPM---------GG--- 147 (263)
T ss_pred HHHHHCCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCC------------EEECCCC---------CH---
T ss_conf 99986359998899985875568899988457666306654147424------------3611787---------13---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 67899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
. -.. +...|-..| ..+-+..|+.+++++|+++|||+++...++..+++.+.+
T Consensus 148 -----~-~~~-----------l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 199 (263)
T PRK07799 148 -----S-AVR-----------LVRQIPYTV-----ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEIA 199 (263)
T ss_pred -----H-HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHH
T ss_conf -----9-999-----------999864999-----999997189997999997798048718337999999999
No 75
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.3e-08 Score=74.21 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=104.6
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH--------------------
Q ss_conf 87289999766623-8------69999999998618998799997588----88888999--------------------
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG-------------------- 83 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~-------------------- 83 (293)
+++|+.|.++-|=. + ..++.+.++.+..|++|+.|||.=+. .|++....
T Consensus 17 ~~~Va~ItLNRP~~~NAls~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (308)
T PRK08272 17 TGRIARITLNRPEKGNAINADTPLELSAAVERADLDPGVHVILVSGAGRGFCAGYDLSAYAEGSSSAGGGGAYRGTVLDG 96 (308)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 99999999648675689999999999999999850999439999678997106848898841334333221000000013
Q ss_pred ----------------------HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf ----------------------9999999984-14786799603323322321000111000130135345556530210
Q gi|254780747|r 84 ----------------------EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 (293)
Q Consensus 84 ----------------------~~i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~ 140 (293)
....+.+..+ +..||||+.++++|..||..+|++||-+++.+++.+|.- .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal~cD~~iaa~~A~fg~p-------~ 169 (308)
T PRK08272 97 KTQAVNHLPDQPWDPMIDYQMMSRFVRGFMSLLHAHKPTVAKIHGYCVAGGTDIALHCDQVIAADDAKIGYP-------P 169 (308)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCCEEECCCCEEECC-------C
T ss_conf 444311244221114678999999999999986399988999888656287999996780055488879775-------5
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 24567774204225531552112346667899998877777666667789999851499988998873498237889987
Q gi|254780747|r 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~ 220 (293)
. ++|. -| .+ . . +...| |.. ...+-+..|+.++|++|++
T Consensus 170 ~-----~~gg--------------~p---~~--~----------~---~~~~v----G~~-~A~el~ltg~~i~A~eA~~ 207 (308)
T PRK08272 170 T-----RVWG--------------VP---AA--G----------M---WAHRL----GDQ-RAKRLLFTGDCITGAQAAE 207 (308)
T ss_pred H-----HHCE--------------EC---CH--H----------H---HHHHH----CHH-HHHHHHHHCCCCCHHHHHH
T ss_conf 6-----4372--------------46---21--2----------8---89883----699-9999987189678999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7980623898999999997418
Q gi|254780747|r 221 VGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 221 ~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
+|||+++-..++..+++.+.+.
T Consensus 208 ~GLvn~vvp~~eL~~~a~~lA~ 229 (308)
T PRK08272 208 WGLAVEAPPPEDLDERTERLVE 229 (308)
T ss_pred CCCCCEECCHHHHHHHHHHHHH
T ss_conf 6984355188899999999999
No 76
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=6.3e-09 Score=76.15 Aligned_cols=164 Identities=19% Similarity=0.275 Sum_probs=108.3
Q ss_pred CCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH--------------HHHH
Q ss_conf 7787289999766623----8---69999999998618998799997588----88888999--------------9999
Q gi|254780747|r 33 DNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG--------------EAIF 87 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~--------------~~i~ 87 (293)
..++.|+.|.++-+=. + .+++.+.++.+.+|+++++|||+=+. .|++.... .++.
T Consensus 17 ~~~~GVa~itlnrP~~~Nals~~m~~~l~~a~~~~~~d~~vrvvvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (271)
T PRK07327 17 RHPPGVLEIVLNRPEGLNAADARMHRELADIWRDVDRDPDVRVVVIRGEGKAFSAGGDLALVEEMAGDFEVRARVWREAR 96 (271)
T ss_pred EECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 80895899998289877898999999999999999768991699997899865567564777631578788999999999
Q ss_pred HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 999984-1478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.+..+ ...||||+.+++.|..+|.-++++||-+++.+.+.++.-. -|+|+.+.
T Consensus 97 ~~~~~~~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~p~------------- 151 (271)
T PRK07327 97 DLVYNVINCSKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGH------------TRLGVAAG------------- 151 (271)
T ss_pred HHHHHHHHCCCCEEEEEECEEECCCCHHHHHCCEEEECCCCEEECCC------------CCEEECCC-------------
T ss_conf 99999997899889998033304550877636843684898587651------------30605777-------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 6678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
.... ..+ -..|-.+| ..+-+..|+.++|++|+++|||+++...++..+.+.+++.
T Consensus 152 ---~~~~--~~l-----------~~~vG~~~-----A~ellltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~lA~ 206 (271)
T PRK07327 152 ---DHAA--IVW-----------PLLCGMAK-----AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAE 206 (271)
T ss_pred ---CCHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf ---4178--889-----------98731999-----9999987798679999987992288687789999999999
No 77
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.1e-08 Score=74.53 Aligned_cols=159 Identities=17% Similarity=0.285 Sum_probs=104.4
Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------------
Q ss_conf 872899997666238-------69999999998618998799997588----8888899---------------------
Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA--------------------- 82 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~--------------------- 82 (293)
++.|+.|.++-|=.- .+++.+.++.+.+|++|+.|||.=.. -|++...
T Consensus 11 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~ 90 (284)
T PRK08290 11 DDGIARITLNRPEARNAQNRGMLYELDAAFTRAEADDAVRVIVLAGAGKHFSAGHDLGSPGRERRPGPDHPTLWWNGATK 90 (284)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCHHHHHCCCCH
T ss_conf 99999999847264689999999999999999964979179999669996254716153553124564310233201102
Q ss_pred --HHHHH--------HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf --99999--------9999841-478679960332332232100011100013013534555653021024567774204
Q gi|254780747|r 83 --GEAIF--------RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 (293)
Q Consensus 83 --~~~i~--------~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~ 151 (293)
.+... ...++++ ..||||+.+.+.|..||..++++||-+++.+.+.++.- .-++|+.
T Consensus 91 ~~~~~~~~~e~~~~l~~~~~i~~~~KPvIAaV~G~a~GgG~~lalacDi~iAse~A~F~~p------------~~~lGl~ 158 (284)
T PRK08290 91 PGVEFRYAREWEYYLGYCRRWRDLPKPTIAQVQGACIAGGLMLAWPCDLIVASDDAFFSDP------------VVRMGIP 158 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECC------------CCCCCCC
T ss_conf 4578888898999999999985299988999868752120687853778997399899775------------3054514
Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 225531552112346667899998877777666667789999851499988-9988734982378899877980623898
Q gi|254780747|r 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
| . +.+ .. -| .| -.. ..+-++.|+.++|++|+++|||+++...
T Consensus 159 ------g-----~-----------~~~---~~-p~-----~l------G~~rA~ellltg~~i~A~eA~~~GLVn~Vvp~ 201 (284)
T PRK08290 159 ------G-----V-----------EYF---AH-PW-----EL------GPRKAKELLFTGDRLSADEAHRLGMVNRVVPR 201 (284)
T ss_pred ------C-----H-----------HHH---HH-HH-----HH------HHHHHHHHHHHCCCCCHHHHHHCCCCCEECCH
T ss_conf ------2-----3-----------577---88-88-----86------09999999982997579999976980334288
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997418
Q gi|254780747|r 231 EEVWQSLYALGV 242 (293)
Q Consensus 231 ~~a~~~l~~~~~ 242 (293)
++..++..+++.
T Consensus 202 ~~L~~~a~~lA~ 213 (284)
T PRK08290 202 DELEAATLELAR 213 (284)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 78
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.99 E-value=1e-08 Score=74.74 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=104.7
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC------CCCCCHHH-----------HHHHHHHH
Q ss_conf 87289999766623-8------6999999999861899879999758------88888899-----------99999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS------SPGGSAYA-----------GEAIFRAI 90 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~------SpGG~~~~-----------~~~i~~ai 90 (293)
.++|+.|.++-|=. + .+++.+.++.+.+ ++++.+||.-. |-|++... .+.+.+.+
T Consensus 11 ~d~Va~itlnrP~~~Nal~~~m~~~l~~al~~~~~-~~~r~vvl~~~~g~~~F~AG~Dl~e~~~~~~~~~~~~~~~~~~~ 89 (261)
T PRK11423 11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNR-PEIRVVILRAPSGSKVWSAGHDIHELPAGGRDPLSYDDPLRQIL 89 (261)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999748687799899999999999999857-99879999658887542378665453225766677877999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
..+. ..|||++.+++.|..||..+|++||-+++.+.+.++.-- -++|+.+.
T Consensus 90 ~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~~~---------------- 141 (261)
T PRK11423 90 RMIQKFPKPVIAMVEGSVWGGAFDLVMSCDLIIAASTSTFAMTP------------ANLGVPYN---------------- 141 (261)
T ss_pred HHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEECCC------------HHCCCCCC----------------
T ss_conf 99994899899996773321408999987542101162695762------------00277768----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 89999887777766666778999985149998899-8873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
... ...+... +..... +-+..|+.++|++|+++|||+++...+++.+...+++
T Consensus 142 ~~~-------------~~~l~~~------iG~~~A~ellltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 195 (261)
T PRK11423 142 LSG-------------ILNFTND------AGIHIVKEMFFTASPITAERALAVGILNHLVEVEELEDFTLQMA 195 (261)
T ss_pred CCH-------------HHHHHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 538-------------9999999------76999999886289673999998798407548579999999999
No 79
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=2.8e-08 Score=72.10 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=105.4
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH
Q ss_conf 787289999766623-8------69999999998618998799997588----88888999---------------9999
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF 87 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~ 87 (293)
..+.|+.|.++.|=. + .+++.+.++.+.+|+++++|||.=.. .|++.... ..+.
T Consensus 11 d~~GVa~itlnrP~~~NAl~~~m~~el~~a~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK07468 11 DARGVATLTLNRPEKHNALSARMIAELTTAALRLAADAAVRVVVLTGAGKSFCAGGDLGWMREQMNADRATRIEEARKLA 90 (262)
T ss_pred ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 18988999982888779989999999999999986589916999978998604788778776411367667778887999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
..++.++ .+||||+.+++.|..||.-++++||-+++.+.+.++.-. -++|+-+. .+
T Consensus 91 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~~-- 147 (262)
T PRK07468 91 LMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIGVSGARFGLTE------------TRLGLIPA---------TI-- 147 (262)
T ss_pred HHHHHHHHCCCCEEEEECCEEEECCCEEECCCCEEEECCCCCCCCHH------------HHCCCCCC---------CC--
T ss_conf 99999984899899997476755554020457678973787544475------------30556778---------43--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 667899998877777666667789999851499988-99887349823788998779806238989999999
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l 237 (293)
...++..| ... ..+-+..|+.++|++|+++|||+++...++.....
T Consensus 148 -------------------~~~~l~ri------G~~~A~ellltg~~i~a~eA~~~GlV~~vv~~~~l~~~~ 194 (262)
T PRK07468 148 -------------------GPYVVARM------GEANARRVFMSARLFDAEEAVRLGLLARVVPAERLDAAV 194 (262)
T ss_pred -------------------HHHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHH
T ss_conf -------------------88999886------299999998508825799999769871652887999999
No 80
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=1.6e-08 Score=73.59 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=104.9
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH----------HHHHH----
Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999----------99999----
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG----------EAIFR---- 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~----------~~i~~---- 88 (293)
++.|++|.++-|=. + .+++.+.++.+.+|++++.|||.=.. -|++.... ....+
T Consensus 18 ~~~V~~itlnrP~~~Nals~~~~~~l~~~l~~~~~d~~vr~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (269)
T PRK06127 18 TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEA 97 (269)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 89999999748875689899999999999999863899159999689977413686457775224786788999999999
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 99984-14786799603323322321000111000130135345556530210245677742042255315521123466
Q gi|254780747|r 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293)
Q Consensus 89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293)
.+..+ ...||+|+.+++.|..||..++++||-+++.+.+.++. | .-++|+-+.
T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p-----e~~~Gl~p~-------------- 151 (269)
T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGI-------P-----AARLGLGYG-------------- 151 (269)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEEECCCCEEEC-------C-----HHHCCCCCC--------------
T ss_conf 99999958998999976812026413320676677569957979-------3-----164096889--------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 67899998877777666667789999851499988998-873498237889987798062389899999999741
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
... -.. +.. .+...... -+..|+.|+|++|+++|||+++-..++..+.+.+++
T Consensus 152 --~g~--~~~-----------l~~------~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 205 (269)
T PRK06127 152 --YDG--VKN-----------LVD------LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYA 205 (269)
T ss_pred --CCH--HHH-----------HHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf --539--999-----------998------868899999987479888999998899247508769999999999
No 81
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=1e-08 Score=74.84 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=101.4
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----------------HHHH
Q ss_conf 87289999766623-8------69999999998618998799997588----8888899-----------------9999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----------------GEAI 86 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----------------~~~i 86 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|++|+.|||.=.. .|++... ...+
T Consensus 12 ~~~Va~ItLNRPe~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~p~~~~ 91 (298)
T PRK12478 12 AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDF 91 (298)
T ss_pred ECCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999718401279999999999999999820899539999789987025635422565543553103566741237
Q ss_pred ----------HHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf ----------9999984-14786799603323322321000111000130135345556530210245677742042255
Q gi|254780747|r 87 ----------FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 (293)
Q Consensus 87 ----------~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~ 155 (293)
.+.+..+ +..||||+.++++|..||.-+|++||-+++.+++.+|.-.+ + +|
T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~Lal~cDi~iAs~~A~f~~p~~-------~-----lg------ 153 (298)
T PRK12478 92 AMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASEDAVIGTPYS-------R-----MW------ 153 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC-------C-----CC------
T ss_conf 88988863068999999818998899987987367789998679478538878866620-------1-----27------
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf 3155211234666789999887777766666778999985149998899-887349823788998779806238989999
Q gi|254780747|r 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 (293)
Q Consensus 156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~ 234 (293)
|. + .+. . ++..+ + .... .-+..|+.++|++|+++|||+++...++..
T Consensus 154 --g~------~---~~~------------~---~~~rl----g--~~~a~~l~ltg~~i~A~eA~~~GLVn~VVp~eeL~ 201 (298)
T PRK12478 154 --GA------Y---LTG------------M---WLYRL----S--LAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLE 201 (298)
T ss_pred --CC------C---HHH------------H---HHHHH----H--HHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHH
T ss_conf --65------4---147------------9---99976----8--99999999719965499999859604452888999
Q ss_pred HHHHHHC
Q ss_conf 9999741
Q gi|254780747|r 235 QSLYALG 241 (293)
Q Consensus 235 ~~l~~~~ 241 (293)
+...+.+
T Consensus 202 ~~a~~~A 208 (298)
T PRK12478 202 ARVAEVA 208 (298)
T ss_pred HHHHHHH
T ss_conf 9999999
No 82
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.6e-08 Score=73.56 Aligned_cols=160 Identities=24% Similarity=0.316 Sum_probs=102.4
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHH----
Q ss_conf 87289999766623----8---69999999998618998799997588----8888899------------99999----
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIF---- 87 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~---- 87 (293)
++.|+.|.++-|=. + .+++.+.++.+. |+++++|||.=.. .|++... .+.+.
T Consensus 11 ~~~Va~ItlnrP~~~NAl~~~m~~el~~al~~~~-d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T PRK08140 11 EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIERFYN 89 (262)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999976877668999999999999999856-789708999788986006665686610545673468999999999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
..++.+. ..||+|+.+++.|..||.-+|++||-+++.+.+.++. ++ -++|+-+. .+.
T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~-------p~-----~~lGl~p~---------~gg- 147 (262)
T PRK08140 90 PLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQ-------AF-----VKIGLVPD---------SGG- 147 (262)
T ss_pred HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEEECCCCEECC-------CC-----CCEEECCC---------CCH-
T ss_conf 999999958998899987976410579987355433036750305-------65-----54651488---------669-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
. ..+ ...|-..| ..+-+..|+.+++++|+++|||+++...++..+.+.+.+
T Consensus 148 ------~--~~l-----------~r~vG~~~-----A~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~lA 198 (262)
T PRK08140 148 ------T--WFL-----------PRLVGMAR-----ALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEARQLA 198 (262)
T ss_pred ------H--HHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf ------9--999-----------99987999-----999998399877067997898578748679999999999
No 83
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2.4e-08 Score=72.49 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=97.0
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HH----HHHHH
Q ss_conf 787289999766623-8------69999999998618998799997588----8888899---------99----99999
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GE----AIFRA 89 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~----~i~~a 89 (293)
.+++|+.|.++-|=. + .+++.+.++.+. |+.++.|||.=+. .|++... .. .+.+.
T Consensus 12 ~~~~Va~itlnrP~~~Nal~~~m~~~l~~~l~~~~-d~~~r~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK07659 12 YEGHVATIMLNRPEALNALDEPMLKELLEALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDRVMNTISEI 90 (260)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999974888889989999999999999975-79986999975798438886768875357867899999999999
Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666
Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
+..+. .+||+|+.+++.|..||..+|++||-+++.+.+.++.-. -++|+-+. .+.
T Consensus 91 ~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~--- 146 (260)
T PRK07659 91 VVTLYTMPKLVISAIHGPAAGLGLSLALTADYVMADISAKLAMNF------------IGIGLIPD---------GGG--- 146 (260)
T ss_pred HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCCCCCCCCEECCC------------CCEEECCC---------CCH---
T ss_conf 999996899899996370664134998742745556776351663------------65665778---------639---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 7899998877777666667789999851499988998873498237889987798062389
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~ 229 (293)
. .. +-..|-.+| ..+-+..|+.|++++|+++|||+++..
T Consensus 147 ----~--~~-----------l~r~iG~~~-----a~ellltg~~~~A~eA~~~GlV~~vvp 185 (260)
T PRK07659 147 ----H--FF-----------LQKRVGENK-----AKQIIWEGKKLSATEALDLGLIDEVFG 185 (260)
T ss_pred ----H--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECC
T ss_conf ----9--99-----------999983999-----999998299756999987797234439
No 84
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=1.9e-08 Score=73.09 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=105.3
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHH------HHH---HHHHHC
Q ss_conf 87289999766623-8------6999999999861899879999758----88888899999------999---999841
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEA------IFR---AIQKVK 94 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~------i~~---ai~~~k 94 (293)
.+.|+.|.++-|=. + .+++.+.++++..|+.++.|||.=. |.|++...... ..+ .+....
T Consensus 10 ~~~ia~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vrvvvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (254)
T PRK08252 10 RGRVLIITINRPEARNAVNLAVAQGLAAALDQLDADDDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFAGLTERP 89 (254)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999758998899899999999999999973999179999889973555536787863897431132579999705
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293)
Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293)
..|||++.+++.|..||.-++++||-+++.+.+.++.-- . ++|+-+. .+ .
T Consensus 90 ~~kPvIaav~G~a~GgG~~la~~~D~~ias~~a~f~~pe-------~-----~~Gl~p~---------~g---------~ 139 (254)
T PRK08252 90 PRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPE-------V-----KRGLVAA---------GG---------G 139 (254)
T ss_pred CCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCC-------C-----EECCCCC---------CH---------H
T ss_conf 799889998787761759999747899852444212760-------1-----1476888---------33---------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 887777766666778999985149998899-88734982378899877980623898999999997418
Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
-.. +... +..... +-+..|+.|++++|+++||||++...++..+.+.+.+.
T Consensus 140 ~~~-----------l~~~------~G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 191 (254)
T PRK08252 140 LLR-----------LPRR------IPYHIAMELALTGDMLPAERAHALGLVNRLTEPGQALDAALELAE 191 (254)
T ss_pred HHH-----------HHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH
T ss_conf 999-----------9999------629999999967898779999988981586280389999999999
No 85
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=1.6e-08 Score=73.55 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=106.8
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH------HHH----HH-HHH
Q ss_conf 87289999766623-8------69999999998618998799997588----888889999------999----99-998
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE------AIF----RA-IQK 92 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~------~i~----~a-i~~ 92 (293)
++.|+.|.++-|=. + .+++.+.++.+.+|+.++.|||.=+. .|++..... ... .. ...
T Consensus 10 ~g~Va~ItLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (254)
T PRK08259 10 NGPVTTVIINRPEARNAVDGPTAAALAAAFRAFDADDAASVAVLTGAGGTFCAGADLKAVATPRANRVHRSGPGPMGPSR 89 (254)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf 89999999858365799899999999999999860999349999779872645668666505553200111210567999
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 41478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293)
Q Consensus 93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293)
.+..||||+.+++.|..||.-++++||-+++.+.+.+|.-- -++|+.... +. +
T Consensus 90 ~~~~kPvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~~~------------~~~Gl~~~~---------gg-----t- 142 (254)
T PRK08259 90 MRLSKPVIAAISGYAVAGGLELALWCDLRVAEEDAVFGVFC------------RRWGVPLID---------GG-----T- 142 (254)
T ss_pred HHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HHCCCCCCC---------CC-----C-
T ss_conf 85899889997788655744664415666855896897702------------640878676---------54-----2-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 998877777666667789999851499988-9988734982378899877980623898999999997418
Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
| .+...| -.. ..+-+..|+.+++++|+++|||+++...++..+++.+++.
T Consensus 143 -------------~-~L~r~v------G~~~A~ellltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~lA~ 193 (254)
T PRK08259 143 -------------V-RLPRLI------GHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAA 193 (254)
T ss_pred -------------H-HHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf -------------0-167774------89999999985883269999986996178785789999999999
No 86
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=2.9e-08 Score=72.01 Aligned_cols=162 Identities=18% Similarity=0.311 Sum_probs=104.1
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHH-------H
Q ss_conf 87289999766623----8---69999999998618998799997588----8888899---------9999-------9
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAI-------F 87 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i-------~ 87 (293)
+++|+.|.++-+=. + .+++.+.++.+.+|+++++|||.=.. .|++... ..++ .
T Consensus 17 ~~~Ia~Itlnrp~~~NAls~~m~~el~~~~~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (270)
T PRK08258 17 DGGVATITLNRPERKNPLTFDSYAELRDLFRALVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLDFTRMTG 96 (270)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCHHCCCCHHHHHHHHHHHH
T ss_conf 99999999747332589999999999999998855899549999679986506658787734001378688899999999
Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+.++.++ ..||+|+.+++.|..||.-++++||-+++.+++.++.. .-++|+-. +
T Consensus 97 ~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~p------------~~~iGl~~-------------~ 151 (270)
T PRK08258 97 DLVKAMRACPQPVIAAVDGVCAGAGAILAMASDLRLATPSAKTAFL------------FTRVGLAG-------------A 151 (270)
T ss_pred HHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCCCEECCC------------CCEEEECC-------------C
T ss_conf 9999998589998999878754676999985262414666612166------------55251157-------------7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
++... ..+ -..|-.+| ..+-++.|+.++|++|.+.|||+++...+++...+.+.+
T Consensus 152 --~~g~~--~~l-----------~r~vG~~~-----a~~llltG~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A 206 (270)
T PRK08258 152 --DMGAC--ALL-----------PRIIGQGR-----ASELLYTGRSMSAEEGERWGFFNRLVEPAALLAEAQALA 206 (270)
T ss_pred --CCHHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
T ss_conf --72178--688-----------88855999-----998787289685999998698306518789999999999
No 87
>PRK08321 naphthoate synthase; Validated
Probab=98.92 E-value=2.3e-08 Score=72.56 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=101.3
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----------CCCCHHH--------------
Q ss_conf 87289999766623----8---69999999998618998799997588-----------8888899--------------
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----------PGGSAYA-------------- 82 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----------pGG~~~~-------------- 82 (293)
++.|+.|.+|-|=. + .+++.+.++.+.+|++|+.|||.=+. .|++...
T Consensus 32 ddGVa~ItLNRPek~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~~~~~gRaFcAG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARQSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYEGGETA 111 (302)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCHHHHCCCCHHHCCCCCC
T ss_conf 08589999758344589889999999999999875899549999699887666656143267645412221000134332
Q ss_pred -------HH--HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf -------99--9999999841-47867996033233223210001110001301-3534555653021024567774204
Q gi|254780747|r 83 -------GE--AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAET-SLVGSIGVLFQYPYVKPFLDKLGVS 151 (293)
Q Consensus 83 -------~~--~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~-s~vGsiGv~~~~~~~~~ll~k~gi~ 151 (293)
.. .+.+..+.++ ..||||+.+++.|..||.-+|++||-+++.+. +.++..- -++|+-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~~ias~~~a~f~~~~------------~~~G~~ 179 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTD------------ADVGSF 179 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCHHHHHHCCCEEECCC------------CCEECC
T ss_conf 32015566567799999999629999999986804237499999603155511263752454------------566214
Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 22553155211234666789999887777766666778999985149998899-88734982378899877980623898
Q gi|254780747|r 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
.. ..+.+ . +.. -+-.... +-+..|+.++|++|+++|||+++...
T Consensus 180 ~~--------~~g~~----------~-----------L~r------~iG~~~A~ellltG~~i~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 180 DG--------GYGSA----------Y-----------LAR------QVGQKFAREIFFLGRTYSAEEAFQMGAVNAVVPH 224 (302)
T ss_pred CC--------CCCCC----------C-----------CHH------HCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCH
T ss_conf 67--------55443----------4-----------025------5069999999832856449999987984144385
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999741
Q gi|254780747|r 231 EEVWQSLYALG 241 (293)
Q Consensus 231 ~~a~~~l~~~~ 241 (293)
++..++..+.+
T Consensus 225 ~~l~~~a~~~A 235 (302)
T PRK08321 225 AELETEALEWA 235 (302)
T ss_pred HHHHHHHHHHH
T ss_conf 78999999999
No 88
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=4.8e-08 Score=70.60 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=102.6
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHHHHHHH
Q ss_conf 87289999766623-8------69999999998618998799997588----88888999------------99999999
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAIFRAIQ 91 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i~~ai~ 91 (293)
++.|+.|.++-|-. + .+++.+.++++. +.++.|||+-.. .|++.... ..+.+.+.
T Consensus 18 ~~~va~itlnrP~~~NAl~~~m~~eL~~~~~~~~--~dvrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (264)
T PRK08150 18 DGDVATIGLNRPAKRNALNDGLIEALRDAFARLP--EEARAVVLHGEGDHFCAGLDLSELRERDATEGMRHSQRWHRVFD 95 (264)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999974888689989999999999998524--48858999877986003345798751682367888889999999
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293)
Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293)
.+. ..|||++.+++.|..||..++++||-+++.+++.++.-. -++|+-+. +
T Consensus 96 ~i~~~~~PvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe------------~~~Gl~p~----------------~ 147 (264)
T PRK08150 96 KIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPE------------GQRGIFVG----------------G 147 (264)
T ss_pred HHHHCCCCEEEEECCEEEEEEEEEECCCEEEECCCCCEEECHH------------CCCCCCCC----------------C
T ss_conf 9982899889997268987024310230455415786771611------------13376888----------------5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
.-. .. +...|-..| ..+-+..|+.++|++|+++|||+++...+++.++..+.+
T Consensus 148 g~~--~~-----------l~r~vG~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 200 (264)
T PRK08150 148 GGS--VR-----------IPRLIGVAR-----MTDMMLTGRVYSAQEGVRLGLAQYLVPAGEALDKALELA 200 (264)
T ss_pred CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH
T ss_conf 299--99-----------999970999-----999998399516999998699738738008999999999
No 89
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.87 E-value=6.5e-08 Score=69.74 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=100.0
Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH---------HHHHHHHHHHH-C
Q ss_conf 872899997666238------6999999999861899879999758----88888899---------99999999984-1
Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA---------GEAIFRAIQKV-K 94 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~---------~~~i~~ai~~~-k 94 (293)
+++|+.|.++-|=.+ .+++.+.++.+.+|+.+++|||.=+ |.|++... ...++..+..+ .
T Consensus 8 ~g~v~~I~LnRPk~Na~~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (251)
T TIGR03189 8 DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLD 87 (251)
T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999588887999999999999999999649792799996879877577664552951589999999999999996
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293)
Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293)
..|||++.+++.|..||.-++++||-+++.+.+.+|.-- -++|+-. .. .
T Consensus 88 ~~~PvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~~-----------------~~--~ 136 (251)
T TIGR03189 88 SPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPE------------IVLGVFA-----------------PA--A 136 (251)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHCCCCEECCCCCCCCCC------------CEEEECC-----------------CC--H
T ss_conf 899889998227862207889866745234764334840------------0261068-----------------81--8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 8877777666667789999851499988998-87349823788998779806238989
Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 (293)
Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~ 231 (293)
- ..+...| ...... -+..|+.++|++|.++|||+++..-.
T Consensus 137 ~-----------~~l~~~i------G~~~a~~l~ltG~~i~A~eA~~~GlVn~v~~d~ 177 (251)
T TIGR03189 137 S-----------CLLPERM------GRVAAEDLLYSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred H-----------HHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCHHCCCCH
T ss_conf 9-----------9999998------699999998208826699999769836005978
No 90
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=1.4e-07 Score=67.64 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=101.2
Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-------------HHHHHHHH
Q ss_conf 87289999766623----8---6999999999861899879999758----88888899-------------99999999
Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-------------GEAIFRAI 90 (293)
Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-------------~~~i~~ai 90 (293)
+++|+.|.++-|=. + .+++.+.++.+..|++++.|||.=. |.|++... .+.+.+.+
T Consensus 10 ~~~Va~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvivltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK07827 10 DGGVARLTLDSPHNRNALSTALVSQLHDGLTDAAADPGVRAVVLTHTGGTFCAGADLSEAGGGDPYDMAVDRAREMTALL 89 (255)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999717875799899999999999999975899559999779987447886054323781445788899999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
+.+. .+||+|+.+++.|..||.-++++||-.++.+++.+|.-- -++|+-+. .+.
T Consensus 90 ~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~lGl~p~---------~g~---- 144 (255)
T PRK07827 90 RAIVELPKPVIAAIDGHVRAGGLGLVGACDIAVAGPGSTFALTE------------ARIGVAPA---------IIS---- 144 (255)
T ss_pred HHHHHCCCCEEEEECCEEEECCHHHHHCCCEEECCCCCEEECCC------------CCCCCCCC---------CCH----
T ss_conf 99996899889997786763404665516554148998550500------------15625887---------539----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH
Q ss_conf 899998877777666667789999851499988998873498237889987798062389-89999999
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l 237 (293)
..++..+-..+ ..+-+..|+.|++++|+++|||+.+.. .++....+
T Consensus 145 -----------------~~~l~rlg~~~-----a~~l~ltg~~~~a~eA~~~Glv~~~~e~l~~~~~~~ 191 (255)
T PRK07827 145 -----------------LTLLPKLSPRA-----AARYYLTGEKFGAAEAARIGLVTVAADDVDAAVAAL 191 (255)
T ss_pred -----------------HHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHH
T ss_conf -----------------99999999999-----998861088278999998799245665599999999
No 91
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.84 E-value=1.1e-07 Score=68.30 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=104.2
Q ss_pred CEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH-------------HHHHHHH
Q ss_conf 72899997666238-------69999999998618998799997588----888889999-------------9999999
Q gi|254780747|r 36 PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE-------------AIFRAIQ 91 (293)
Q Consensus 36 ~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~-------------~i~~ai~ 91 (293)
+.|+.|.++-+-.. .+++.+.++.+..|+.++.|+|.=+. -|++..... ..++.+.
T Consensus 13 ~~v~~itl~rp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltG~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (257)
T COG1024 13 DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLR 92 (257)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 88899997067623588999999999999999629981699998189716717498877422310468888878899999
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678
Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293)
Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293)
.++ ..||||+.+.+.|..||.-++.+||.+++.+.+.+|...+. +|+-+. .
T Consensus 93 ~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~------------iGl~pg----------------~ 144 (257)
T COG1024 93 ALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVN------------LGLLPG----------------D 144 (257)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCCC----------------C
T ss_conf 998589999998365014678899870887983477788554134------------265878----------------4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHC
Q ss_conf 99998877777666667789999851499988998-8734982378899877980623898-99999999741
Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALG 241 (293)
Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~ 241 (293)
.....+. |-+...... -+..|+.+++++|+++||||++... ++..+.+.+..
T Consensus 145 --g~~~~l~-----------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a 198 (257)
T COG1024 145 --GGTQRLP-----------------RLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELA 198 (257)
T ss_pred --CHHHHHH-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHH
T ss_conf --5889999-----------------97396889999982898889999978991466587688999999999
No 92
>KOG1680 consensus
Probab=98.84 E-value=3.1e-08 Score=71.77 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=105.8
Q ss_pred CCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHH-------------HHHH
Q ss_conf 787289999766623-------869999999998618998799997588----8888899999-------------9999
Q gi|254780747|r 34 NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSS----PGGSAYAGEA-------------IFRA 89 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~~-------------i~~a 89 (293)
.+.+|++|.|+-|=. -..++.+++....+|+.++.+||.=.. .|.+...... ..+.
T Consensus 43 ~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~ 122 (290)
T KOG1680 43 EDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDL 122 (290)
T ss_pred CCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 47876899837867752115899999999999740467654799976887523643789875211234454430012566
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 99841478679960332332232100011100013013534555653021024567774204225531552112346667
Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 90 i~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
+. +-+||||+.+.++|-.||.-+|+.||=+||.|++.+|...-. +|+-+
T Consensus 123 ~~--~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~------------~Gi~p----------------- 171 (290)
T KOG1680 123 VS--RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIR------------MGIIP----------------- 171 (290)
T ss_pred HH--HCCCCEEEEEECEEECCCHHHHHHCCEEECCCCCEECCCCCC------------CCCCC-----------------
T ss_conf 65--246551375503664361222353134752677752464431------------27764-----------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+.-..+.+. ..|-.+| .++-+..|+.+++++|++.|||++|-..++++.++.+++
T Consensus 172 -~~GGT~rl~-----------r~vG~s~-----Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~ 226 (290)
T KOG1680 172 -SWGGTQRLP-----------RIVGKSR-----ALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLA 226 (290)
T ss_pred -CCCCHHHHH-----------HHHCHHH-----HHHHHHHCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf -777210688-----------7857678-----999997168364778875785247524306799999999
No 93
>pfam00378 ECH Enoyl-CoA hydratase/isomerase family. This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase.
Probab=98.74 E-value=1.1e-07 Score=68.21 Aligned_cols=131 Identities=27% Similarity=0.344 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHHHHC-CCCCEEEEECCCCCCCCCC
Q ss_conf 999999999861899879999758----888888999------------99999999841-4786799603323322321
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQKVK-NRKPVITEVHEMAASAGYL 113 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~ 113 (293)
+++.+.++++.+|++++.|+|+=+ |.|++.... +.+.+...+++ .+||+++.+++.|..+|..
T Consensus 20 ~~l~~~~~~~~~d~~i~vvil~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIa~v~G~a~GgG~~ 99 (169)
T pfam00378 20 TELIQALEKLEQDPSVRAVVLTGAPGAFSAGADIKEMAAKRPAQQAQFSLEALDLWSRLEDLPKPVIAAVNGYALGGGLE 99 (169)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHH
T ss_conf 99999999998689945999978996422588889986168377889999999999999968998999966836504608
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00011100013013534555653021024567774204225531552112346667899998877777666667789999
Q gi|254780747|r 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 (293)
Q Consensus 114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V 193 (293)
++++||.+++.+.+.++.-.+ ++|+-+. .. .-..+ ..
T Consensus 100 la~~~D~~va~~~a~f~~pe~------------~~Gl~p~----------------~~--~~~~l-----------~~-- 136 (169)
T pfam00378 100 LALACDYRIAADNAKFGLPET------------KLGIIPG----------------AG--GTQRL-----------PR-- 136 (169)
T ss_pred HHHHCCCHHHCCCCEEECCCC------------CCCCCCC----------------CC--HHHHH-----------HH--
T ss_conf 887376065357984747503------------3775864----------------46--99999-----------99--
Q ss_pred HHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf 85149998899-887349823788998779806238
Q gi|254780747|r 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 (293)
Q Consensus 194 a~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig 228 (293)
.+..... +-+..|+.+++++|++.||||++.
T Consensus 137 ----~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vV 168 (169)
T pfam00378 137 ----IIGHSAALEMLLTGRRIRAQEALKMGLVDKVV 168 (169)
T ss_pred ----HHCHHHHHHHHHCCCCCCHHHHHHCCCEEECC
T ss_conf ----97999999999819946799999829653215
No 94
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=4.5e-07 Score=64.48 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-----------HHHHHHHHHH
Q ss_conf 872899997666238------6999999999861899879999758----888888999-----------9999999984
Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-----------EAIFRAIQKV 93 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-----------~~i~~ai~~~ 93 (293)
+++|+.|.++-+=.+ .+++.+.++++.+|. +.||+.=+ |.|++.... ....+...++
T Consensus 10 ~~~Va~itlnr~~~Nal~~~~~~~l~~al~~~~~d~--~vvvltg~g~~FsAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (229)
T PRK06213 10 EDGVATITLDDGKVNAISPDMIDALNAALDQAEDDR--AAVVLTGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRL 87 (229)
T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999998999878999999999999999753598--299998899862178767766017276899999899999999
Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 1-478679960332332232100011100013013-53455565302102456777420422553155211234666789
Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETS-LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s-~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
. ..||||+.+++.|..||..++.+||-.++.++. .+|. +. -++|+.. | .
T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~~~~~~~-------~e-----~~iGl~~-------------~---~- 138 (229)
T PRK06213 88 LSHPKPVIVACTGHAIAKGAFLLLSGDYRIGVHGPFKIGL-------NE-----VAIGMTM-------------P---H- 138 (229)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCC-------CC-----CEECCCC-------------C---H-
T ss_conf 9579999999878651199899871888999668612168-------62-----3268888-------------6---5-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
..-..+ ...+...+ ..+-+..|+.|+|++|+++||||++...++..+++.+.+.
T Consensus 139 -~g~~~~-----------~~~~~~~~-----~~~~~ltg~~~~a~eA~~~GlV~~vv~~~~l~~~a~~~A~ 192 (229)
T PRK06213 139 -AGIELA-----------RDRLTPSA-----FQRSVINAEMFDPETAVAAGFLDEVVPPEQLLTRAQAAAR 192 (229)
T ss_pred -HHHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf -599999-----------99889999-----9999984997509999987986167688899999999999
No 95
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=1.1e-06 Score=62.15 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=101.1
Q ss_pred EEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----HHH----HHHHHHHHC-CC
Q ss_conf 89999766623----8---69999999998618998799997588----8888899-----999----999999841-47
Q gi|254780747|r 38 VARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----GEA----IFRAIQKVK-NR 96 (293)
Q Consensus 38 i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----~~~----i~~ai~~~k-~~ 96 (293)
|++|.++-|=. + .+++.+.++.+.+|++++.|||.=+. .|++... ++. ....++.++ ..
T Consensus 2 Va~itlnRP~~~Nal~~~m~~eL~~a~~~~~~d~~vr~vVl~g~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (240)
T PRK06072 2 VAVITIDRPDKLNALNLETRNELISALREINADPKIRVVILTGEGRAFSVGADLSEISEDITEDLRDSFHPIIKEIRFSN 81 (240)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999748988899899999999999999975899069999879986551588788745446889999999999998389
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 86799603323322321000111000130135345556530210245677742042255315521123466678999988
Q gi|254780747|r 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293)
Q Consensus 97 kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293)
||+|+.+++.|..||.-+|++||-+++.+++.++.- .-|+|+-+. .+ .
T Consensus 82 kp~Iaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~---------~g-----~------ 129 (240)
T PRK06072 82 KIYISAVNGVVAGAGISIALSTDFRFASKDVRFVTA------------FQRIGLAPD---------TG-----L------ 129 (240)
T ss_pred CCEEEEECCEEEHHHHHHHHHCCEEEECCCCCEECC------------CCCCCCCCC---------CC-----H------
T ss_conf 998999888755687999986276553023210067------------556050899---------76-----9------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHCC
Q ss_conf 777776666677899998514999889988734982378899877980623898-999999997418
Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGV 242 (293)
Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~~ 242 (293)
..++..+-- ....+-+..|+.|++++|++.|||+..... +++.+.+..+..
T Consensus 130 ----------~~~l~~l~g-----~~a~~~ll~g~~~~a~eA~~~Glv~~~~~~l~~a~~la~~ia~ 181 (240)
T PRK06072 130 ----------AYILLKLGG-----VRFYDHLILGGEFTAEDAEEWGILKISEDPLSDALKMAEEISS 181 (240)
T ss_pred ----------HHHHHHHHH-----HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ----------999999999-----9999988618973799999879941166658999999999983
No 96
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.65 E-value=5.2e-07 Score=64.08 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=97.7
Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH
Q ss_conf 87289999766623-8------69999999998618998799997588----88888999----------9999999984
Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV 93 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~ 93 (293)
+++|+.|.++-|-. + .+++.+.++++.+| ++.|||.=+. .|++.... +.+++.+.++
T Consensus 11 ~~~Va~itLnRP~~~NAl~~~m~~el~~al~~~~~d--~~vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l 88 (251)
T PRK07112 11 DGDICFLQLHRPDAQNAINNRLIAECMDVLDRCEHA--ATIVVLEGLPDVFCFGADFSDIAEKPDALIDSEPLYGLWHRL 88 (251)
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999999997388877887999999999999851669--808999889987056777276651632212467999999999
Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899
Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293)
Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293)
. ..||+++.+++.|..||.-++++||-+++.+++.+|.-- -++|+-+. .+
T Consensus 89 ~~~p~pvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~pe------------~~~Gl~p~---------~~-------- 139 (251)
T PRK07112 89 ATGPYITIAHVQGKVNAGGIGFVAASDIAIADENVPFSLSE------------LLFGLIPA---------CV-------- 139 (251)
T ss_pred HHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECCC------------CCCCCCCC---------CH--------
T ss_conf 84998299996165666156776521502457998898741------------06373777---------37--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 998877777666667789999851499988998873498237889987798062389899999
Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293)
Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293)
...+...|-..| ..+-+..|+.++|++|+++||||++.-..+...
T Consensus 140 -------------~~~L~r~iG~~~-----A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~~~~ 184 (251)
T PRK07112 140 -------------LPFLARRIGTQK-----AHYMTLMTQPVTAQQAFSWGLVDAIDANSDTLL 184 (251)
T ss_pred -------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHH
T ss_conf -------------999999997999-----999999399624999998799788619778999
No 97
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP; InterPro: IPR001907 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin . It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP , although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0008462 endopeptidase Clp activity, 0006508 proteolysis.
Probab=98.36 E-value=1.6e-06 Score=61.07 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=99.1
Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011
Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293)
Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293)
|-+.+.|.+. +.++.++--....+.-|-|-|++|||||++.+.-.|++.++..|- .|.+.+-+.++|-|-++.+++
T Consensus 30 ~~l~~~~~d~~a~~~vaqllfl~~e~~~k~i~ly~nsPGG~~~aG~~iydtm~~i~P--~v~t~C~G~aasmGafll~~G 107 (192)
T TIGR00493 30 IFLSGEVEDEVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAAG 107 (192)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHCC--CHHEEEHHHHHHHHHHHHHCC
T ss_conf 332020013578899999887513687551588983688500144688877875163--220000101666778987437
Q ss_pred C--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1--00013013534555653021024567774204225531552112346667--8999988777776666677899998
Q gi|254780747|r 119 N--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVS 194 (293)
Q Consensus 119 d--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~--~s~e~~~~~~~~l~~~~~~f~~~Va 194 (293)
. +-.+-|.+.+- - ..|+-. -...+.+.....+-.+...+.+.++
T Consensus 108 ~~Gkr~~l~~~~~m------i--------------------------hqPlGG~~Gqa~~i~i~a~~il~~~~~~~~~l~ 155 (192)
T TIGR00493 108 AKGKRAALPNSRIM------I--------------------------HQPLGGAQGQASDIEIQAKEILKLKKLLNEILA 155 (192)
T ss_pred CCCCHHCCCCCEEE------E--------------------------ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65310002434057------8--------------------------647788665401345668999999999999998
Q ss_pred HCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCC
Q ss_conf 514999889988734-9823788998779806238
Q gi|254780747|r 195 ESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVG 228 (293)
Q Consensus 195 ~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig 228 (293)
.+.|.+.|.+..-.+ ....++++|.++||||.+-
T Consensus 156 ~~~G~~~e~~~~d~~rd~f~~a~~a~~yGl~d~~l 190 (192)
T TIGR00493 156 EHTGQSLEKIEKDTERDFFMSAEEAKEYGLIDKVL 190 (192)
T ss_pred HHHCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHH
T ss_conf 74073167887654222210225565303078884
No 98
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=98.31 E-value=2.1e-06 Score=60.31 Aligned_cols=96 Identities=16% Similarity=0.326 Sum_probs=76.6
Q ss_pred CCEEEEEEEEEEECCH--------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH------------------HHHH
Q ss_conf 8728999976662386--------9999999998618998799997588888889999------------------9999
Q gi|254780747|r 35 SPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGE------------------AIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~--------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~------------------~i~~ 88 (293)
.+-|+||.|+-|-+-. .++-+.|++...|+.|+.+||-=.-||.-+++++ +-.+
T Consensus 20 ~gdVaVvkid~PN~KvN~L~k~l~~Ef~~v~~~l~~~~~v~SaVliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~ 99 (740)
T TIGR02441 20 KGDVAVVKIDSPNSKVNTLSKELSAEFKEVLNELWTNEAVKSAVLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQE 99 (740)
T ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06779998778997301113789999999998730682524688974699870325626789872268999998677899
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHH
Q ss_conf 99984-147867996033233223210001110001301--3534
Q gi|254780747|r 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVG 130 (293)
Q Consensus 89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vG 130 (293)
.+.++ |+.|||||.+.+.|..||.=+|.+|.+-+|... |+.|
T Consensus 100 ~~~r~E~S~KPiVAAI~GsClGGGLElAlaChYRIAtkD~KT~Lg 144 (740)
T TIGR02441 100 MFERIEKSKKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG 144 (740)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 999974289875875226310416899875044112236545346
No 99
>PRK05617 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=7.6e-06 Score=56.75 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH------------HH---
Q ss_conf 787289999766623-8------69999999998618998799997588-----888889999------------99---
Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE------------AI--- 86 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~------------~i--- 86 (293)
.+++|++|.++-|=. + .+++.+.++.+.+|++|++|||+=.+ .||++.... ..
T Consensus 14 ~~g~v~~itLNRP~~lNAl~~~m~~~l~~~l~~~~~d~~v~~vvl~g~G~kaFcAGgDi~~l~~~~~~~~~~~~~~ff~~ 93 (356)
T PRK05617 14 VEGGAGVITLNRPKALNALSLEMIRAIDQALDAWEDDDAVAAVVLEGAGERAFCAGGDIRALYEAARAGDALARDRFFRE 93 (356)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88999999967862036899999999999999986299823999973887716677548989753113686789999999
Q ss_pred -HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHH
Q ss_conf -99999841-478679960332332232100011100013013534----55565
Q gi|254780747|r 87 -FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG----SIGVL 135 (293)
Q Consensus 87 -~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG----siGv~ 135 (293)
+..-..+. .+||+++.++++|..||.-+|++||..++.+++.++ .||++
T Consensus 94 ey~l~~~i~~~~KP~IA~i~G~~mGGG~~Lal~~d~RIate~t~famPE~~iGl~ 148 (356)
T PRK05617 94 EYRLNARIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFF 148 (356)
T ss_pred HHHHHHHHHHCCCCEEEEEECEEEECHHHHHHHCCEEEECCCCEEECCCCCCCCC
T ss_conf 9999999997799989995162664489997608757852664351553244757
No 100
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.12 E-value=1.8e-05 Score=54.34 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=61.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH
Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999
Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293)
Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293)
...|.++.+++.|..||.-+|++||-+++.+++.+|.--+. +|+-+ +. --
T Consensus 119 ~p~~tIAaV~G~a~GGG~elalacD~~IA~~~A~fg~pEv~------------lGl~P---------g~-------Gg-- 168 (286)
T PRK08788 119 AGAISIALVQGNALGGGFEAALSHHTIIAEEGVKMGFPEIL------------FNLFP---------GM-------GA-- 168 (286)
T ss_pred CCCCEEEEECCEECHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCC---------CC-------HH--
T ss_conf 99846999847312577999997898997399886363013------------48687---------86-------07--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 8877777666667789999851499988-998873498237889987798062389899999
Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293)
Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293)
+..... .+... ..+-+..|+.|+|++|.+.||||++.-.++..+
T Consensus 169 -----------~~~L~R------~iG~~~A~emiltG~~~sAeeA~~~GLVd~vvp~g~~~~ 213 (286)
T PRK08788 169 -----------YSFLAR------RIGPQLAEELILSGKLYSAEELHDMGLVDQLVERGQGYA 213 (286)
T ss_pred -----------HHHHHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCHHH
T ss_conf -----------889998------869999999998299168999997699838528984899
No 101
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=97.81 E-value=0.00041 Score=45.83 Aligned_cols=164 Identities=18% Similarity=0.292 Sum_probs=103.9
Q ss_pred CCCCEEEEEEEE--EEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHH---------HHHHHHH--
Q ss_conf 778728999976--662386------99999999986189987999975888-----88889---------9999999--
Q gi|254780747|r 33 DNSPHVARIAIR--GQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAY---------AGEAIFR-- 88 (293)
Q Consensus 33 ~~~~~i~~i~i~--G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~---------~~~~i~~-- 88 (293)
.-++.|++|.|+ |.-++. +++.+-|.++.++++++|+|+.=.-| |.+.. .++.+++
T Consensus 6 ~r~d~ia~ltiDVpge~mNTLkaeF~~qv~~il~q~~~~~~l~GlV~~SgKpD~FiAGADI~Ml~aC~TA~~A~~La~~G 85 (732)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILKQLKEKKELRGLVLVSGKPDSFIAGADISMLAACQTADDAKALAQKG 85 (732)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 46786279997127885202255446899999999972888735899852788712254188886137767999999865
Q ss_pred --HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf --9998414-7867996033233223210001110001301--3534555653021024567774204225531552112
Q gi|254780747|r 89 --AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293)
Q Consensus 89 --ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293)
.+.++.+ .-||||.+++-|..||.=||.||+.-+.+.. |..|.==|. ||+=+ .
T Consensus 86 q~~~~~l~ALp~~VvAAIHGaCLGGGLELALACH~RvCsdD~KT~LGlPEVQ------------LGLLP---------G- 143 (732)
T TIGR02440 86 QELFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQ------------LGLLP---------G- 143 (732)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCEECCCCCEEECCCCHH------------HCCCC---------C-
T ss_conf 8999864117840788504886550489999708760258987230686040------------12458---------7-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 3466678999988777776666677899998514999889988734982378899877980623898999999997418
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293)
+.-| +.+=.++ |++ ..++-+.+|+=.-++||+++||||++.-.+=.++-+.+++.
T Consensus 144 ----sGGT----QRLPRLv---------------Gv~-~ALdMiLTGKQlRakqAlklGLV~dvVP~~ILL~~A~~~A~ 198 (732)
T TIGR02440 144 ----SGGT----QRLPRLV---------------GVS-TALDMILTGKQLRAKQALKLGLVDDVVPRSILLDVAVELAL 198 (732)
T ss_pred ----CCCC----CCCHHHH---------------HHH-HHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf ----7763----3002587---------------798-89887630321015778525872324641579999999985
No 102
>KOG1681 consensus
Probab=97.79 E-value=0.00025 Score=47.24 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=106.1
Q ss_pred CCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECC-------------------CCCCC-HH-HH
Q ss_conf 67787289999766623-------86999999999861899879999758-------------------88888-89-99
Q gi|254780747|r 32 EDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLS-------------------SPGGS-AY-AG 83 (293)
Q Consensus 32 ~~~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~-------------------SpGG~-~~-~~ 83 (293)
+...|+|..+.++-|-- =..++.+.++...+||.+++|+|.-. .+-|. ++ .+
T Consensus 26 k~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681 26 KSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf 37887479998468310004669999999999875346988429999568751213657302455520264330376653
Q ss_pred HHHHHHHHHH--------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf 9999999984--------14786799603323322321000111000130135345556530210245677742042255
Q gi|254780747|r 84 EAIFRAIQKV--------KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 (293)
Q Consensus 84 ~~i~~ai~~~--------k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~ 155 (293)
..+++.|+++ ++.|||++.+++.|..+|.=+.++||--|+...+++. +..+
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffs---------------------vkEV 164 (292)
T KOG1681 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFS---------------------VKEV 164 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEECCEEEECCCCEEE---------------------EEEE
T ss_conf 9999999999999899983890189998753205552101202445641230146---------------------5654
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCCCCHHHHHHCCCCCCC-CCHHHH
Q ss_conf 3155211234666789999887777766666778999985149998899887-34982378899877980623-898999
Q gi|254780747|r 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVV-GGQEEV 233 (293)
Q Consensus 156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~-~~g~~~~~~~A~~~GLvD~i-g~~~~a 233 (293)
-.|--.+.+. .+.+...+.+ ..-.+++ +.++-|.|.+|++.|||-++ .+.++.
T Consensus 165 DvglaADvGT---------L~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l 219 (292)
T KOG1681 165 DVGLAADVGT---------LNRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLVSRVFPDKEEL 219 (292)
T ss_pred EEEHHHCHHH---------HHHHHHHHCC----------------HHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCHHHH
T ss_conf 2201113146---------7665687553----------------67888887665223403566437410106978998
Q ss_pred HHHHHHHCC
Q ss_conf 999997418
Q gi|254780747|r 234 WQSLYALGV 242 (293)
Q Consensus 234 ~~~l~~~~~ 242 (293)
+.....++.
T Consensus 220 l~~~l~mA~ 228 (292)
T KOG1681 220 LNGALPMAE 228 (292)
T ss_pred HHHHHHHHH
T ss_conf 750477888
No 103
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.69 E-value=0.00043 Score=45.71 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
+.-++.++.|.+=. . -|+--||+||..+ .+++.|++-|..+.. +-|+++.+-+-..|||.+-...||+++
T Consensus 85 RKA~Rlm~lAekf~-~-PvitfIDTpGA~pg~~AEerGqaeaIA~~l~~m~~l~VPiIsvIiGEGgSGGALAl~~~D~Vl 162 (256)
T PRK12319 85 RKALRLMKQAEKFG-R-PVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVW 162 (256)
T ss_pred HHHHHHHHHHHHHC-C-CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCEEE
T ss_conf 99999999999809-9-879996079867885321038999999999999769998799997687663210111257045
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293)
Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293)
|-++++ |+-+|||....+ +|. +.+
T Consensus 163 MlE~a~--------------------------------------YSVISPEGcASI------Lwr------------d~~ 186 (256)
T PRK12319 163 MLENTM--------------------------------------YAVLSPEGFASI------LWK------------DGS 186 (256)
T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH
T ss_conf 445718--------------------------------------996588887888------616------------734
Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 9988734982378899877980623898
Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
...+-++..-.|+++-+++|+||+|-.+
T Consensus 187 ka~eAAealklTa~dL~~lgiID~II~E 214 (256)
T PRK12319 187 RATEAAELMKITAGELYQMGIVDKVIPE 214 (256)
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEEEEC
T ss_conf 4599999834799999868997188508
No 104
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.58 E-value=0.00081 Score=43.99 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
+.-++.++.|.+=. .-|+--||+||..+ .+++.|++-|..... +-|+++.+-+-..|||-+-...||+|+
T Consensus 137 RKAlRlm~lAekf~--~Pvit~IDTpGAypG~~AEerGqaeAIA~~l~~m~~l~vPiisviiGEGgSGGALal~~~d~v~ 214 (318)
T PRK05724 137 RKALRLMEMAERFG--LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVL 214 (318)
T ss_pred HHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCEEE
T ss_conf 99999999999709--9779993489767898763138899999999999689998799997788744477772468588
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293)
Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293)
|-.+++ |+-.|||....+ +|. +.+
T Consensus 215 Mle~a~--------------------------------------YSViSPEgcAsI------Lwk------------d~~ 238 (318)
T PRK05724 215 MLEHST--------------------------------------YSVISPEGCASI------LWK------------DAA 238 (318)
T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH
T ss_conf 844718--------------------------------------885487776687------625------------886
Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 9988734982378899877980623898
Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
...+-++..-.|+++-+++|+||+|-.+
T Consensus 239 ~a~eAAe~lkiTa~dL~~lgiiD~II~E 266 (318)
T PRK05724 239 KAPEAAEAMKITAQDLKELGIIDEIIPE 266 (318)
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf 7599999758999999867997165469
No 105
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.50 E-value=0.0012 Score=42.96 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
+.-++.++.|.+= + .-|+--||+||..+ .+++.|++-|..... +-|+++.+-+-..|||-+-...||+++
T Consensus 141 RKAlRlm~lAekf-~-~Pvit~IDTpGAypG~~AEerGQaeAIA~nL~~m~~L~vPiisvViGEGGSGGALAl~vaDrvl 218 (322)
T CHL00198 141 RKALRLMEHANRF-G-LPILTFIDTPGAWAGLKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIL 218 (322)
T ss_pred HHHHHHHHHHHHC-C-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 9999999999970-9-9779983289867887633158799999999999679998799997688762332201467466
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293)
Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293)
|-.+++ |+-.|||....+ +|. +.+
T Consensus 219 Mle~s~--------------------------------------YSVISPEGcAsI------Lwk------------d~~ 242 (322)
T CHL00198 219 MLEYAV--------------------------------------YTVATPEACAAI------LWK------------DSK 242 (322)
T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HCC------------CHH
T ss_conf 452517--------------------------------------885488887787------336------------802
Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 9988734982378899877980623898
Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
...+-++..-.|+++-+++|+||+|-.+
T Consensus 243 ~a~eAAealkiTA~dL~~lgIID~II~E 270 (322)
T CHL00198 243 KSAEAAEALKITSEDLLVLGIIDEILPE 270 (322)
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf 4799998701169999977997276368
No 106
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.46 E-value=0.0025 Score=40.86 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=101.9
Q ss_pred CCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------------------------H
Q ss_conf 87289999766623-------8699999999986189987999975888888899------------------------9
Q gi|254780747|r 35 SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYA------------------------G 83 (293)
Q Consensus 35 ~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~------------------------~ 83 (293)
.+.|+.|.|+-|=. ...++++++..|..|++|--|+|.=++-|+-+.. .
T Consensus 26 ~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~iGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnv 105 (282)
T COG0447 26 VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNV 105 (282)
T ss_pred CCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 68557998468666236787329999999986301788328998547888843505887121167777457666763000
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCC-
Q ss_conf 9999999984147867996033233223210001110001301353455565302102456777420422553155211-
Q gi|254780747|r 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA- 162 (293)
Q Consensus 84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~- 162 (293)
-++...|+- -.|||++.+.+++..||--+-..||--+|..++.+|-.|-- +|.|-.
T Consensus 106 LdlQrlIR~--~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~---------------------VGSFD~G 162 (282)
T COG0447 106 LDLQRLIRT--MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPK---------------------VGSFDGG 162 (282)
T ss_pred HHHHHHHHH--CCCCEEEEECCEEECCCCEEEEEEEEEEECCCCHHCCCCCC---------------------CCCCCCC
T ss_conf 238889874--89655999703750586279998542550001311378998---------------------3420586
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH----HHHHHH
Q ss_conf 2346667899998877777666667789999851499988998873498237889987798062389899----999999
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE----VWQSLY 238 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~----a~~~l~ 238 (293)
.++ ..+- ..|-+ . ..-+-|+=++.|++++|++.|||..+...++ .++|..
T Consensus 163 ~Gs----------~yla-----------r~VGq----K-kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~ 216 (282)
T COG0447 163 YGS----------SYLA-----------RIVGQ----K-KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAR 216 (282)
T ss_pred CCH----------HHHH-----------HHHHH----H-HHHHHHHHHHCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH
T ss_conf 447----------8999-----------98642----5-65654123310569999856871231338888899999999
Q ss_pred HHC
Q ss_conf 741
Q gi|254780747|r 239 ALG 241 (293)
Q Consensus 239 ~~~ 241 (293)
++.
T Consensus 217 E~l 219 (282)
T COG0447 217 EML 219 (282)
T ss_pred HHH
T ss_conf 998
No 107
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=97.45 E-value=0.00057 Score=44.94 Aligned_cols=162 Identities=31% Similarity=0.417 Sum_probs=110.6
Q ss_pred CCEEEEEEEEEEEC--CH-----HHHHHHHHHHHCCCCCCEEEEE-----------CC----CCCCCHH----HHHHHHH
Q ss_conf 87289999766623--86-----9999999998618998799997-----------58----8888889----9999999
Q gi|254780747|r 35 SPHVARIAIRGQIE--DS-----QELIERIERISRDDSATALIVS-----------LS----SPGGSAY----AGEAIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~--~~-----~~l~~~l~~a~~d~~ik~ivL~-----------i~----SpGG~~~----~~~~i~~ 88 (293)
+..|+.|++|-|=- +. .++.+.|++++.|+.|++++|- ++ +|||.+. ..|.-|+
T Consensus 6 ~~GV~~LTLNRPd~LNSF~~~MH~~l~~aL~~ver~~~~R~l~LTGAGRGFcAGQDL~dr~v~~~G~~pDLG~~ve~fYn 85 (259)
T TIGR02280 6 EKGVARLTLNRPDKLNSFTAEMHAELREALERVERDDDARALLLTGAGRGFCAGQDLSDRNVTPGGAAPDLGETVEKFYN 85 (259)
T ss_pred HCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 25601431377001024008899999999866401575458887388874344655544678874225853221777507
Q ss_pred -HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf -9998414-78679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 89 -AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 89 -ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
.++++++ .||||+.+++.++.+|--||.+||=++|..++. |-..+-|+|.-++ +-+..
T Consensus 86 PLvRrL~~Lp~PVv~AVNGVAAGAGAnLALAcDIvlAa~sA~------------FiqAF~klGL~PD--------sGGTw 145 (259)
T TIGR02280 86 PLVRRLRALPKPVVCAVNGVAAGAGANLALACDIVLAARSAK------------FIQAFAKLGLIPD--------SGGTW 145 (259)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHCCCCC--------CCCHH
T ss_conf 489999726997798535103447788887511999987557------------9988875246779--------85000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH-HHHHHHHHHCC
Q ss_conf 66789999887777766666778999985149998899887349823788998779806238989-99999997418
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGV 242 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~-~a~~~l~~~~~ 242 (293)
+-| ..|-+.|- .-..+ -|.-.+|+||.++|||=++-.-+ ....++..++.
T Consensus 146 ~LP---------------------r~vG~ARA----~GLAl-lG~~LdA~~A~~WGLIW~~v~D~k~L~~~~~~LA~ 196 (259)
T TIGR02280 146 LLP---------------------RLVGRARA----MGLAL-LGEKLDARTAAEWGLIWQVVDDAKALMDEAQALAA 196 (259)
T ss_pred HHH---------------------HHHHHHHH----HHHHH-HCCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 466---------------------89999999----99885-04846868897438644220057899999999999
No 108
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.40 E-value=0.00082 Score=43.94 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHCCCC---CCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf 999999999861899---87999975888888-------899999999999841478679960332--332232100011
Q gi|254780747|r 51 QELIERIERISRDDS---ATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS 118 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~---ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a 118 (293)
..+...++.|.++.. -..+++-.+|.|+- ..+..+|..++.+++..-|++..+.+. |..|.-|++.+|
T Consensus 90 ~KI~~llelA~~~~~~~~~~pvV~~~esGG~RlqE~~~gL~a~aei~~a~~~lsg~VP~I~VI~G~~gCfGG~a~~aal~ 169 (302)
T PRK07189 90 AKLAGLLELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAGLC 169 (302)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf 99999999999817557888889996588888565530588999999999984689988999448765616888998728
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 100013013534555
Q gi|254780747|r 119 NIIVAAETSLVGSIG 133 (293)
Q Consensus 119 d~I~a~p~s~vGsiG 133 (293)
|.|+|.+.+.+|.-|
T Consensus 170 D~IImT~~arigm~G 184 (302)
T PRK07189 170 SYLVVSEEGRLGLSG 184 (302)
T ss_pred CEEEEECCCEEECCC
T ss_conf 589982787561446
No 109
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.19 E-value=0.0023 Score=41.08 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHCCCC--CC-EEEEECCCCCC-------CHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf 999999999861899--87-99997588888-------8899999999999841478679960332--332232100011
Q gi|254780747|r 51 QELIERIERISRDDS--AT-ALIVSLSSPGG-------SAYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS 118 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~--ik-~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a 118 (293)
+.+.+.++.|.++.. .+ .++.-+||.|. +..+..+|..++.+.+..-|+++.+.+. |+.|++|++..|
T Consensus 81 ~Ki~r~~e~A~e~~~~~~~~PvI~l~dSGGaRl~e~~~gl~~~~ei~~~~~~~sg~IPqIsvV~G~~~c~GG~a~~~~l~ 160 (274)
T TIGR03133 81 AKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC 160 (274)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCC
T ss_conf 99999999999807445787779996178876443320012389999999996699987999955455667707700237
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 100013013534555
Q gi|254780747|r 119 NIIVAAETSLVGSIG 133 (293)
Q Consensus 119 d~I~a~p~s~vGsiG 133 (293)
|.|+|.+.+.++.-|
T Consensus 161 D~iIm~~~~~ifl~G 175 (274)
T TIGR03133 161 SYLIMTEEGRLGLSG 175 (274)
T ss_pred CEEEEECCCEEECCC
T ss_conf 389997895795338
No 110
>KOG1679 consensus
Probab=97.15 E-value=0.0016 Score=42.11 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-----------------HHHHHHHHHHHC-CCCCEEEEECCCCCCCCC
Q ss_conf 99999999986189987999975888888899-----------------999999999841-478679960332332232
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYA-----------------GEAIFRAIQKVK-NRKPVITEVHEMAASAGY 112 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~-----------------~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y 112 (293)
+++.+.++....|++++-|+++--.||---++ ...++..+.... -..|+++.+++.+..||.
T Consensus 61 ~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGL 140 (291)
T KOG1679 61 KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGL 140 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHCCCCH
T ss_conf 99999999974078626999823898605447465765127999999999999999999985786501110200006515
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
-+|.+||--++..++.+|.+-.. +.|-+ .++ -| +.+-.
T Consensus 141 ElALACDiRva~s~akmGLvET~------------laiiP---------GaG-----Gt----QRLpR------------ 178 (291)
T KOG1679 141 ELALACDIRVAASSAKMGLVETK------------LAIIP---------GAG-----GT----QRLPR------------ 178 (291)
T ss_pred HHHHHCCCEEHHHHCCCCCCCCC------------EEEEC---------CCC-----CC----CHHHH------------
T ss_conf 65554011002000300420012------------35510---------898-----64----12378------------
Q ss_pred HHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 985149998899-887349823788998779806238989
Q gi|254780747|r 193 VSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 (293)
Q Consensus 193 Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~ 231 (293)
-+..... +-++.++++.|.+|.++|||..+....
T Consensus 179 -----~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679 179 -----IVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred -----HHHHHHHHHHHHHHEECCCHHHHHCCHHHHHHHCC
T ss_conf -----77488887673221012636677500679998627
No 111
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.12 E-value=0.00051 Score=45.24 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=51.5
Q ss_pred HHHHHHHHHH-CCCCCCEEEEECCCC-----CC-------CHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCC
Q ss_conf 9999999986-189987999975888-----88-------8899--------999999999841--47867996033233
Q gi|254780747|r 52 ELIERIERIS-RDDSATALIVSLSSP-----GG-------SAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAA 108 (293)
Q Consensus 52 ~l~~~l~~a~-~d~~ik~ivL~i~Sp-----GG-------~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~ 108 (293)
++..++.+.. +-|.|+.||+.-.-+ |. +..+ ..|-++.|.+.. ++.+.++.+++.|+
T Consensus 52 el~da~~r~rfehp~v~~vv~~s~~~r~fcaGani~mL~~s~h~~kvnfckftnetrn~~edss~~sg~~~iaavnG~~a 131 (548)
T TIGR03222 52 ELHDAVQRLRFEHPEVRTVVMTSGKDKVFCAGANIRMLGGSTHAHKVNFCKFTNETRNGIEDASEHSGQKFLAAINGTAA 131 (548)
T ss_pred EHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 48989988742388658999933887457457455766256537752476541134566777676329679998515124
Q ss_pred CCCCCCCCCCCCCCCCH
Q ss_conf 22321000111000130
Q gi|254780747|r 109 SAGYLISCASNIIVAAE 125 (293)
Q Consensus 109 S~~Y~iAs~ad~I~a~p 125 (293)
.|||-+|.+||+|++-.
T Consensus 132 GGGYELALAcd~I~lvD 148 (548)
T TIGR03222 132 GGGYELALACDEIMLVD 148 (548)
T ss_pred CCCEEEHHHCCEEEEEC
T ss_conf 77210003256789970
No 112
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.01 E-value=0.0025 Score=40.91 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=68.7
Q ss_pred EEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH--------------HH-HHHHH
Q ss_conf 99997666238-------69999999998618998799997588-----888889999--------------99-99999
Q gi|254780747|r 39 ARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE--------------AI-FRAIQ 91 (293)
Q Consensus 39 ~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~--------------~i-~~ai~ 91 (293)
|-|.|+-|=.- .++++.+++.|..|.+|..|||.=-. .||...... .+ .+.+.
T Consensus 39 AwITINRP~~yNAft~~tVkEli~AF~~A~~D~sVgvIVLTGaGDKAFCTGGDqke~ae~yag~p~e~~~~~~l~~~m~~ 118 (360)
T TIGR03200 39 AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVS 118 (360)
T ss_pred EEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 26783587770478889999999999972428852399995587611215876787545777885235778789999999
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 841-47867996033233223210001110001301353455565
Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 (293)
Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~ 135 (293)
..+ .+|||++-+.+++..||--+.++||=.+|+.++.+|..|-.
T Consensus 119 ~Ir~cpKPVIArVNG~AVGGG~eL~maCDLtIAsD~A~FGQ~GPK 163 (360)
T TIGR03200 119 AILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPK 163 (360)
T ss_pred HHHCCCCCEEEEECCEEECCCCEEEEEEHHHHHHHHHHHCCCCCC
T ss_conf 985799876998715884387178876301345444454278888
No 113
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.88 E-value=0.021 Score=35.07 Aligned_cols=125 Identities=19% Similarity=0.319 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCC--CCCCCCCC
Q ss_conf 9999999998618998799997588888-------88999999999998414-78679960332332232--10001110
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGY--LISCASNI 120 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y--~iAs~ad~ 120 (293)
+.+.++++.|.+. ++- +|+-..|.|. +..+......+++++++ +.|.++...+-. .||. -.|+.+|-
T Consensus 146 Eki~~a~e~A~~~-~~P-lI~~~~SGGaRMQEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt~Pt-tGGvtASfa~lgDi 222 (288)
T PRK05654 146 EKIVRAVERALEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI 222 (288)
T ss_pred HHHHHHHHHHHHC-CCC-EEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEECCCCCE
T ss_conf 9999999999974-997-89996787633327467899889999999999976996899966898-58944430247877
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00130135345556530210245677742042255315521123466678999988777776666677899998514999
Q gi|254780747|r 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 (293)
Q Consensus 121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~ 200 (293)
|+|.|.+.+|.-|-+ .++.. + +..++
T Consensus 223 iiaEp~A~IgFAG~R-----------------------------------------VIeqt-----------i--~~~LP 248 (288)
T PRK05654 223 IIAEPKALIGFAGPR-----------------------------------------VIEQT-----------V--REKLP 248 (288)
T ss_pred EEEECCCEEEECCCH-----------------------------------------HHHHH-----------C--CCCCC
T ss_conf 998058458731538-----------------------------------------99985-----------0--89899
Q ss_pred HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 88998873498237889987798062389899999999741
Q gi|254780747|r 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
..+-+++-.++.|+||.|....+..+.+..+.
T Consensus 249 ---------~~FQtae~ll~~G~iD~iv~R~~lk~~l~~ll 280 (288)
T PRK05654 249 ---------EGFQRAEFLLEHGAIDMIVHRRELRDTLASLL 280 (288)
T ss_pred ---------CCHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf ---------74011899997799636645899999999999
No 114
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.81 E-value=0.0033 Score=40.14 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998618998799997588888889-------99999999998414-78679960332332232100011100013
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAY-------AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~-------~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~ 124 (293)
-++..+.|.+ ----|+.-||+||..+. +++.|+.-+.+... +-|+++.+-+-..|||-+.-..||+++|-
T Consensus 139 AlRlm~~Aek--F~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP~I~iVIGEGgSGGALAi~vad~V~ml 216 (317)
T COG0825 139 ALRLMKLAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLML 216 (317)
T ss_pred HHHHHHHHHH--HCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999998--59987999508987788545650628999999999857999879999657875246776577899998
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 01353455565302102456777420422553155211234666789999887777766666778999985149998899
Q gi|254780747|r 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 (293)
Q Consensus 125 p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~ 204 (293)
.+|+ |+-.|||....+ +|. +.+..
T Consensus 217 e~s~--------------------------------------ySVisPEG~AsI------LWk------------D~~ka 240 (317)
T COG0825 217 ENST--------------------------------------YSVISPEGCASI------LWK------------DASKA 240 (317)
T ss_pred HHCE--------------------------------------EEECCHHHHHHH------HHC------------CHHHH
T ss_conf 8441--------------------------------------220473132445------525------------83242
Q ss_pred HHHHCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 88734982378899877980623898
Q gi|254780747|r 205 LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293)
Q Consensus 205 ~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293)
.+.+...-.|+.+-+++|+||.|-.+
T Consensus 241 ~eAAe~mkita~dL~~lgiID~II~E 266 (317)
T COG0825 241 KEAAEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHHHCCCCHHHHHHCCCCCEECCC
T ss_conf 99999827878889767975123468
No 115
>pfam00549 Ligase_CoA CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.
Probab=96.65 E-value=0.01 Score=37.06 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCC-CCCEEEEECCCCCC
Q ss_conf 899997666238699999999986189987999975888888-8999999999998414-78679960332332
Q gi|254780747|r 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKN-RKPVITEVHEMAAS 109 (293)
Q Consensus 38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S 109 (293)
--.|++-|.....+.+.+.++...+||++++|++.+--.+|. -..+..+.+++++.+. ++||++++.+..+.
T Consensus 23 a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~~e~~A~~~v~a~~~~~~~~~PvVa~i~Gt~a~ 96 (128)
T pfam00549 23 HNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD 96 (128)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 25888379998633799999999578886299999877436269999999999998469987589999302699
No 116
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=96.57 E-value=0.038 Score=33.45 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=106.7
Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCCC---------------------------CCC-
Q ss_conf 872899997666238-------699999999986189987999975888---------------------------888-
Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSP---------------------------GGS- 79 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~Sp---------------------------GG~- 79 (293)
.+.|+.|.|+-|=+- .++++++|..+..|++|--|||.=+.| +|.
T Consensus 11 ~d~i~~i~i~RP~V~NAFRP~T~~E~~~al~~aR~~~~iGVv~LtG~GPsPkdG~~AFCsGGDQ~irg~~GgY~d~~G~t 90 (278)
T TIGR01929 11 DDGIAKITINRPQVRNAFRPRTVDEIIRALDDAREDPDIGVVILTGAGPSPKDGDKAFCSGGDQKIRGKSGGYIDESGVT 90 (278)
T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEECCCCCC
T ss_conf 26378998437821147780048999999997137999627986176777888871265368523755877535578721
Q ss_pred -----HH-----HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf -----89-----9999999999841478679960332332232100011100013-013534555653021024567774
Q gi|254780747|r 80 -----AY-----AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKL 148 (293)
Q Consensus 80 -----~~-----~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~-p~s~vGsiGv~~~~~~~~~ll~k~ 148 (293)
++ ..-++.+.|+-+ .||||+-+.+++..||-.|-..||==+|+ .++.+|-.|-
T Consensus 91 adtvdPara~~LnvL~~qr~IR~~--PKpVia~V~Gya~GGGh~Lh~~CDLTiAsre~A~fgQtgp-------------- 154 (278)
T TIGR01929 91 ADTVDPARASRLNVLEVQRLIRTL--PKPVIAMVNGYAIGGGHVLHVVCDLTIASREHARFGQTGP-------------- 154 (278)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCC--CCCEEEEECCEEECCCEEEHHHHHHHHHHHHCCCCCCCCC--------------
T ss_conf 133363124656346554586418--9816887537532576201332302265321340147887--------------
Q ss_pred HHCCEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCC
Q ss_conf 20422553155211-2346667899998877777666667789999851499988998-873498237889987798062
Q gi|254780747|r 149 GVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 (293)
Q Consensus 149 gi~~~~~~~g~~K~-~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ 226 (293)
++|.|=. .++ .++- ..| | ....+ =|+-++-|+|+||.+.|||-.
T Consensus 155 -------kVGSFDgGyGs----------aYlA-----------R~v----G--QKkaREiwFlcrqY~A~~a~~MG~VN~ 200 (278)
T TIGR01929 155 -------KVGSFDGGYGS----------AYLA-----------RIV----G--QKKAREIWFLCRQYDAEEAEKMGLVNA 200 (278)
T ss_pred -------CCCCCCCCHHH----------HHHH-----------HHH----C--CCHHHHEEECCCCCCHHHHHHCCCCEE
T ss_conf -------73566563457----------8998-----------640----5--500011000156325688973795301
Q ss_pred CCCHHH----HHHHHHHHC
Q ss_conf 389899----999999741
Q gi|254780747|r 227 VGGQEE----VWQSLYALG 241 (293)
Q Consensus 227 ig~~~~----a~~~l~~~~ 241 (293)
+....+ .++|..++.
T Consensus 201 VV~~a~Le~~~i~wa~~il 219 (278)
T TIGR01929 201 VVPLADLEKETIEWAREIL 219 (278)
T ss_pred ECCHHHHHHHHHHHHHHHH
T ss_conf 0035445589999999986
No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.51 E-value=0.0066 Score=38.22 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=80.5
Q ss_pred HHHHHHHHHHCCCC-CCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999861899-879999758888888-------999999999998414-786799603323322321000111000
Q gi|254780747|r 52 ELIERIERISRDDS-ATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 52 ~l~~~l~~a~~d~~-ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
-...+|+-+..-++ ---|+.-|||||.-+ -|+|.|+.=|+++.. +-||++.+=+=..|||-+--..+|++-
T Consensus 144 GYRKALrLm~~AerF~~PIi~fiDT~GAYPGigAEerGQsEAIA~NL~Ema~L~VPvic~vIGEGGSGGALaiGVGDkv~ 223 (329)
T TIGR00513 144 GYRKALRLMKMAERFNLPIITFIDTPGAYPGIGAEERGQSEAIAKNLREMARLKVPVICTVIGEGGSGGALAIGVGDKVN 223 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 04799999987776179858865388887562044505278999998997109988799985268614789998988998
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988
Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293)
Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293)
|=.+|+ |+=.|||....+ +|. +.+
T Consensus 224 MLeyS~--------------------------------------YSViSPEGCAai------LWk------------da~ 247 (329)
T TIGR00513 224 MLEYST--------------------------------------YSVISPEGCAAI------LWK------------DAS 247 (329)
T ss_pred HHHHHH--------------------------------------HCCCCHHHHHHH------CCC------------CHH
T ss_conf 876202--------------------------------------200087889986------067------------962
Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf 99887349823788998779806238
Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVG 228 (293)
Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig 228 (293)
.-..-+..-=.|+.+-++++|||.|-
T Consensus 248 ka~~Aa~amkItA~dLkel~lID~iI 273 (329)
T TIGR00513 248 KAEKAAEAMKITAPDLKELGLIDSII 273 (329)
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 67999998378921566401343101
No 118
>PRK08184 enoyl-CoA hydratase; Provisional
Probab=96.46 E-value=0.0015 Score=42.33 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=51.3
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCC------------CCCCHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCCC
Q ss_conf 999999998618998799997588------------8888899--------999999999841--478679960332332
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSS------------PGGSAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAAS 109 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~S------------pGG~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~S 109 (293)
+.++.|+ .+-|.|+.||+.-.- .|++..+ ..|-++.|..-. ++.+.++.+++.|+.
T Consensus 67 Da~qR~R--Fehp~v~~vv~~s~k~rvFcaGANI~MLg~s~H~~kVNFCKfTNETRn~~Edss~~sg~~fiaavnG~~AG 144 (558)
T PRK08184 67 DALQRIR--FEHPEVRTVVLTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAG 144 (558)
T ss_pred HHHHHHH--CCCCCEEEEEEECCCCCEEECCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 7898864--13885379999438863464577624413566421432454144001214444323584787543353347
Q ss_pred CCCCCCCCCCCCCCCHH
Q ss_conf 23210001110001301
Q gi|254780747|r 110 AGYLISCASNIIVAAET 126 (293)
Q Consensus 110 ~~Y~iAs~ad~I~a~p~ 126 (293)
|||-+|.+||+|++-..
T Consensus 145 GGYELALAcd~I~LvDD 161 (558)
T PRK08184 145 GGYELALACDEIILVDD 161 (558)
T ss_pred CCEEEEHHCCEEEEECC
T ss_conf 84211021566899707
No 119
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.45 E-value=0.011 Score=36.73 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=52.9
Q ss_pred CEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 728999976662386-------------------------9999999998618998799997588888889999999999
Q gi|254780747|r 36 PHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 (293)
Q Consensus 36 ~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai 90 (293)
.+|.+|.=+|+++.. .++++.|+...+|++.++|+| +..+||+.- ++.++.|
T Consensus 162 G~VGivSRSGTLTyE~~~~lt~~G~GqSt~VgIGGDpi~Gt~f~d~L~~f~~D~~T~aIVl-iGEIGG~~E--e~aA~~I 238 (309)
T PTZ00187 162 GKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIIL-IGEIGGTAE--EEAADWI 238 (309)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE-EECCCCHHH--HHHHHHH
T ss_conf 8358994477528999999986698669999846987589789999999862957658999-816598699--9999999
Q ss_pred HHHCCCCCEEEEECCCCCC
Q ss_conf 9841478679960332332
Q gi|254780747|r 91 QKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 91 ~~~k~~kpvva~~~~~~~S 109 (293)
++-.-+|||++|+.+.++-
T Consensus 239 k~~~~~KPVva~IAG~~AP 257 (309)
T PTZ00187 239 KNNPTKKPVVSFIAGITAP 257 (309)
T ss_pred HHCCCCCCEEEEEEECCCC
T ss_conf 9669999889998125689
No 120
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.28 E-value=0.094 Score=30.97 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC--CCCCCCC
Q ss_conf 9999999998618998799997588888-------88999999999998414-786799603323322321--0001110
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYL--ISCASNI 120 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~--iAs~ad~ 120 (293)
+.+.++++.|.++. ...|++- -|.|. +..+...+..+|++++. +.|.+++..+-. .||.- -|+.+|-
T Consensus 144 eki~ra~E~A~e~k-~P~v~f~-aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PT-tGGVsASfA~lGDi 220 (294)
T COG0777 144 EKITRAIERAIEDK-LPLVLFS-ASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI 220 (294)
T ss_pred HHHHHHHHHHHHHC-CCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHCCCE
T ss_conf 99999999999857-9889995-676465768899999999999999999875996699955898-66646767752674
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00130135345556530210245677742042255315521123466678999988777776666677899998514999
Q gi|254780747|r 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 (293)
Q Consensus 121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~ 200 (293)
|++.|.+.+|.-|-... | |..=+ +++
T Consensus 221 ~iAEP~AlIGFAGpRVI--------------------------------------E--QTire--------------~LP 246 (294)
T COG0777 221 IIAEPGALIGFAGPRVI--------------------------------------E--QTIRE--------------KLP 246 (294)
T ss_pred EECCCCCCCCCCCCHHH--------------------------------------H--HHHCC--------------CCC
T ss_conf 65176300015763244--------------------------------------6--56443--------------168
Q ss_pred HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 88998873498237889987798062389899999999741
Q gi|254780747|r 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+| +=+++.-++.|+||.|....|....+....
T Consensus 247 --------eg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll 278 (294)
T COG0777 247 --------EG-FQTAEFLLEHGMIDMIVHRDELRTTLASLL 278 (294)
T ss_pred --------CC-HHHHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf --------62-346899997587305633588999999999
No 121
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=96.10 E-value=0.033 Score=33.81 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=52.3
Q ss_pred CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 8728999976662386-------------------------999999999861899879999758888888999999999
Q gi|254780747|r 35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a 89 (293)
..+|.++.=+|+.+.. ..+++.|+...+|+..++|++- .-+||..- ++-++.
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~aE--e~AA~~ 221 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPAE--EEAAEY 221 (293)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEE-ECCCCCHH--HHHHHH
T ss_conf 885699966866399999999763885589998578876881599999986458674079999-26799389--999999
Q ss_pred HHHHCCCCCEEEEECCCCC
Q ss_conf 9984147867996033233
Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAA 108 (293)
Q Consensus 90 i~~~k~~kpvva~~~~~~~ 108 (293)
|++-.++|||++|+.+..+
T Consensus 222 i~~~~~~KPVVa~iaG~ta 240 (293)
T COG0074 222 IKANATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHCCCCCEEEEEECCCC
T ss_conf 9963468986999843679
No 122
>KOG0016 consensus
Probab=96.00 E-value=0.12 Score=30.23 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHH------------HHHHHHH-------HHHHHC-CCCCEEEEECC
Q ss_conf 6999999999861899879999758----8888889------------9999999-------999841-47867996033
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLS----SPGGSAY------------AGEAIFR-------AIQKVK-NRKPVITEVHE 105 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~------------~~~~i~~-------ai~~~k-~~kpvva~~~~ 105 (293)
...+.++++.|.+|+++.-+++.-+ +-|.+.. .+....+ -++-|- -+||+++.+.+
T Consensus 37 y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNG 116 (266)
T KOG0016 37 YVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNG 116 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99999999876504655899994376178506665156653798600011046777777999999974589877999437
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
-+-.-|.-+.--||.+|++..+. |.--+.++|.-++.-.+--+
T Consensus 117 PAIGlgasil~lcD~V~A~Dka~------------F~TPfa~lGq~PEG~Ss~t~------------------------- 159 (266)
T KOG0016 117 PAIGLGASILPLCDYVWASDKAW------------FQTPFAKLGQSPEGCSSVTL------------------------- 159 (266)
T ss_pred CCCCHHHHHHHHHHEEEECCCEE------------EECCCHHCCCCCCCCEEEEE-------------------------
T ss_conf 73131257764311688525237------------85560122779886204662-------------------------
Q ss_pred HHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 677899998514999889-988734982378899877980623898999999
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~ 236 (293)
.+.|.... -+-+.-|+.+++++|.+.|||+++-...+.-+.
T Consensus 160 ----------p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~ 201 (266)
T KOG0016 160 ----------PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE 201 (266)
T ss_pred ----------HHHHCHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHH
T ss_conf ----------175352568889993883308899863825320675777899
No 123
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.58 E-value=0.048 Score=32.81 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=50.3
Q ss_pred CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 8728999976662386-------------------------999999999861899879999758888888999999999
Q gi|254780747|r 35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a 89 (293)
..+|++|.=+|+++.. .++.+.|+...+|++.++|+|.-. .||+.- ++.++.
T Consensus 145 pG~VgiiSrSGtLtye~~~~l~~~g~G~S~~VgiGgD~i~G~~f~d~L~~f~~Dp~T~~IvliGE-iGG~~E--~~aa~~ 221 (289)
T PRK05678 145 KGRVGIVSRSGTLTYEAVAQLTDLGLGQSTCVGIGGDPINGTNFIDVLKAFEEDPETDAIVMIGE-IGGSAE--EEAAEW 221 (289)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC-CCCHHH--HHHHHH
T ss_conf 98689997776579999999997698669898527887678449999999742977327999975-598799--999999
Q ss_pred HHHHCCCCCEEEEECCCCCC
Q ss_conf 99841478679960332332
Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 90 i~~~k~~kpvva~~~~~~~S 109 (293)
|+. +-.|||++|+.+.++.
T Consensus 222 i~~-~~~KPVva~iaG~~AP 240 (289)
T PRK05678 222 IKA-NVTKPVVGYIAGVTAP 240 (289)
T ss_pred HHH-CCCCCEEEEEECCCCC
T ss_conf 985-5899679999514589
No 124
>pfam08496 Peptidase_S49_N Peptidase family S49 N-terminal. This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343).
Probab=95.55 E-value=0.092 Score=31.04 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=8.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999975888888899999999999
Q gi|254780747|r 68 ALIVSLSSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 68 ~ivL~i~SpGG~~~~~~~i~~ai~ 91 (293)
-.||+++. .-.+.+.+.+|+.|.
T Consensus 99 vfVldF~G-Di~As~V~~LREEIt 121 (154)
T pfam08496 99 LFVLDFKG-DIDASEVESLREEIT 121 (154)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHH
T ss_conf 89995358-726676688999999
No 125
>KOG1682 consensus
Probab=95.37 E-value=0.23 Score=28.48 Aligned_cols=142 Identities=22% Similarity=0.289 Sum_probs=93.9
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCC---------------CCCHHH--HHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC
Q ss_conf 9999999986189987999975888---------------888899--9999999998414-786799603323322321
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSP---------------GGSAYA--GEAIFRAIQKVKN-RKPVITEVHEMAASAGYL 113 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~Sp---------------GG~~~~--~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~ 113 (293)
.+-..|.+-.++...+.|++.-+.+ |....+ -+...+.+...+. +-||++-++++++-+|-.
T Consensus 63 ~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQ 142 (287)
T KOG1682 63 ALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQ 142 (287)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCE
T ss_conf 99999851244465159999358852246545777624755207899999999999998649986698854433421554
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00011100013013534555653021024567774204225531552112346667899998877777666667789999
Q gi|254780747|r 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 (293)
Q Consensus 114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V 193 (293)
+-..||-+++..+|-+..-|+ ++-.|- +. | -|
T Consensus 143 LVaSCD~vVa~k~SkF~tPG~----------------~vGlFC-----ST-----P----------------------Gv 174 (287)
T KOG1682 143 LVASCDMVVATKNSKFSTPGA----------------GVGLFC-----ST-----P----------------------GV 174 (287)
T ss_pred EEEEEEEEEEECCCCCCCCCC----------------CEEEEE-----CC-----C----------------------CH
T ss_conf 888603899705764458988----------------545675-----68-----5----------------------06
Q ss_pred HHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 851499988-998873498237889987798062389899999999741
Q gi|254780747|r 194 SESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 194 a~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
+-.|-+++. ...-++.|.+.++++|+-.||+-.+...++.-.+..+..
T Consensus 175 AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~ 223 (287)
T KOG1682 175 ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEIT 223 (287)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6765155267799987179776499998404651477888778999999
No 126
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=95.26 E-value=0.15 Score=29.61 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=53.0
Q ss_pred EEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHH-----------------H--CC-
Q ss_conf 89999766623-8699999999986189987999975-8888888999999999998-----------------4--14-
Q gi|254780747|r 38 VARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK-----------------V--KN- 95 (293)
Q Consensus 38 i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~-----------------~--k~- 95 (293)
|..|+|..--. ..+++..+++++.++. ++|+||++ +.|||...++..+...... + ..
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 8999933246525899999999998658-858999967899854999999997157887579981688851024556545
Q ss_pred ---CCCEEEEECCCCCCCCCCCCC
Q ss_conf ---786799603323322321000
Q gi|254780747|r 96 ---RKPVITEVHEMAASAGYLISC 116 (293)
Q Consensus 96 ---~kpvva~~~~~~~S~~Y~iAs 116 (293)
.+|+++.++...+|++=.+|-
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~ag 307 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAG 307 (406)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 578999899988998579999999
No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.05 E-value=0.074 Score=31.61 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=53.7
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH----------HHHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 999999986189987999975888888899999----------999999841-47867996033233223210-001110
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEA----------IFRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI 120 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~----------i~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~ 120 (293)
+.+.+.+.-+.+.-+.|++-+|+||-....-+| +..++...+ .+.|+++.+-+.+.||+|.. +..||+
T Consensus 53 lA~~Vl~~i~~d~krPIv~lvD~~gq~~g~r~E~~Gi~~~~A~l~~~~~~Ar~~GHp~i~lv~g~a~sGafla~gl~a~~ 132 (238)
T TIGR03134 53 LAQAVLDVIEADPKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADR 132 (238)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 99999999983899977999807775456047872399999999999999985499869999657344899986642061
Q ss_pred CCCCHHHHHH
Q ss_conf 0013013534
Q gi|254780747|r 121 IVAAETSLVG 130 (293)
Q Consensus 121 I~a~p~s~vG 130 (293)
+|+-|.+.+-
T Consensus 133 ~~Alp~a~i~ 142 (238)
T TIGR03134 133 IIALPGAMVH 142 (238)
T ss_pred HHCCCCCHHH
T ss_conf 1127874353
No 128
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.03 E-value=0.3 Score=27.85 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=81.5
Q ss_pred EEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CHH---HHHHHH
Q ss_conf 2899997666238---------------------69999999998618998799997588888-----889---999999
Q gi|254780747|r 37 HVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-----SAY---AGEAIF 87 (293)
Q Consensus 37 ~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-----~~~---~~~~i~ 87 (293)
.=|++.-.|.|-+ .+.+.++++.|.+. +.. +++---| || +.. |.....
T Consensus 130 ~dAvv~g~G~I~g~~vvv~vmDF~FmGGSMGsvvGEki~ra~e~A~~~-k~P-lIi~saS-GGARMQEGilSLMQMaKts 206 (305)
T CHL00174 130 TDAVQTGIGQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLP-LIIVCAS-GGARMQEGSLSLMQMAKIS 206 (305)
T ss_pred CEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCC-EEEEECC-CCCCCCCCHHHHHHHHHHH
T ss_conf 807999999999977999997240115652078899999999999973-997-8999078-7634346277898779999
Q ss_pred HHHHHH-CC-CCCEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 999984-14-786799603323322321--00011100013013534555653021024567774204225531552112
Q gi|254780747|r 88 RAIQKV-KN-RKPVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293)
Q Consensus 88 ~ai~~~-k~-~kpvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293)
.++.++ ++ +-|.++...+-. .||.. .|+.+|-|+|.|.+++|.-|-+ .
T Consensus 207 ~Al~~~~~~~~lpyIsvlt~PT-tGGVtASfA~lgDiiiAEP~AlIGFAG~R---V------------------------ 258 (305)
T CHL00174 207 SALYDYQSNKKLFYISILTSPT-TGGVTASFGMLGDIIIAEPNAYIAFAGKR---V------------------------ 258 (305)
T ss_pred HHHHHHHHCCCCCEEEEECCCC-CCCCEEEECCCCCEEEECCCCEEEECCCH---H------------------------
T ss_conf 9999998457873899973788-77801241025665897588667605617---8------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
++. .+ +..++ ..+=+++-.++.|+||.|....+..+.+..+.
T Consensus 259 --------------Ieq-----------Ti--~~~LP---------egFQtaEfllehG~iD~IV~R~~lk~~l~~lL 300 (305)
T CHL00174 259 --------------IEQ-----------TL--NKTVP---------EGSQAAEYLFHKGLFDLIVPRNLLKGVLSELF 300 (305)
T ss_pred --------------HHH-----------HH--CCCCC---------CCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH
T ss_conf --------------888-----------61--89899---------86322699997799716765899999999999
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=94.79 E-value=0.16 Score=29.51 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=89.9
Q ss_pred CEEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHH
Q ss_conf 72899997666238---------------------69999999998618998799997588888-------889999999
Q gi|254780747|r 36 PHVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIF 87 (293)
Q Consensus 36 ~~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~ 87 (293)
-.=|||.-+|+|.+ .+.++++|++|..+ ++--|++.- |.|. |.-|-..+.
T Consensus 113 ~~dAv~tg~G~l~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A~~~-~~P~~i~sA-SGGARMQE~~~SLMQMAKtS 190 (292)
T TIGR00515 113 LKDAVVTGKGTLYGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKAVAD-RVPLVIFSA-SGGARMQEGLLSLMQMAKTS 190 (292)
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 8651686003754842799975143458863026888999999999873-798899967-87516899988898889999
Q ss_pred HHHHHHCCCC-CEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 9999841478-6799603323322321--000111000130135345556530210245677742042255315521123
Q gi|254780747|r 88 RAIQKVKNRK-PVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293)
Q Consensus 88 ~ai~~~k~~k-pvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293)
.+|+++++.| |.|....+- +-||.- -|+-+|-|+|.|.++||.-|-+.. ..+.|+
T Consensus 191 aAL~~~~E~~lp~ISvLTdP-T~GGVSASFA~LGDL~iAEPkAlIGFAGpRVI----------------eQT~re----- 248 (292)
T TIGR00515 191 AALARLSEEKLPYISVLTDP-TTGGVSASFAMLGDLNIAEPKALIGFAGPRVI----------------EQTIRE----- 248 (292)
T ss_pred HHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE----------------EECCCC-----
T ss_conf 99974212258724413688-97226789876402544156423127875023----------------232656-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4666789999887777766666778999985149998899887349823788998779806238989999999974
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293)
+++.+ +=|++=-++.|+||-|..++|..+.|..+
T Consensus 249 ---------------------------------kLPeg---------FQtsEFLL~hG~iD~iV~R~~lk~tL~~l 282 (292)
T TIGR00515 249 ---------------------------------KLPEG---------FQTSEFLLEHGAIDMIVHRPDLKKTLASL 282 (292)
T ss_pred ---------------------------------CCCCC---------HHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf ---------------------------------58670---------03589998459512566277999999999
No 130
>pfam06833 MdcE Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.
Probab=94.69 E-value=0.11 Score=30.56 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH----------HHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 9999999861899879999758888888999999----------99999841-47867996033233223210-001110
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAI----------FRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI 120 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i----------~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~ 120 (293)
+.+.+...-++..-..|++-+|+||-....-+|+ .+++...+ ++.|++..+-+.+.||+|.- +..+|+
T Consensus 51 LA~~Vld~i~~~~~rpIl~lvD~~~Q~~~rrdEllGi~~~lAhla~~~~~AR~~GHpvI~Lv~g~a~sGaFla~gl~a~~ 130 (234)
T pfam06833 51 LAAAVLEAIEQRDKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVIGLLYGKAMSGAFLAHGLQANR 130 (234)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999971999877999807765433489984099999999999999997599769987544011899998876352
Q ss_pred CCCCHHHHHH
Q ss_conf 0013013534
Q gi|254780747|r 121 IVAAETSLVG 130 (293)
Q Consensus 121 I~a~p~s~vG 130 (293)
+|+-|.+.+-
T Consensus 131 ~~ALp~a~i~ 140 (234)
T pfam06833 131 LIALPGAMVH 140 (234)
T ss_pred HHCCCCCHHH
T ss_conf 3117985031
No 131
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB; InterPro: IPR012799 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), dodecenoyl-CoA delta-isomerase activity (5.3.3.8 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is Escherichia coli FadB (P21177 from SWISSPROT). This entry excludes the FadJ family represented by P77399 from SWISSPROT.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004165 dodecenoyl-CoA delta-isomerase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0009062 fatty acid catabolic process, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=94.63 E-value=0.34 Score=27.48 Aligned_cols=139 Identities=19% Similarity=0.296 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 9999999998618998799997588----8888899------------------99999999984147867996033233
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSS----PGGSAYA------------------GEAIFRAIQKVKNRKPVITEVHEMAA 108 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------~~~i~~ai~~~k~~kpvva~~~~~~~ 108 (293)
.+|-++|+...++.++||++|.=+- .|.+.+. +..|.+.+.++ .-|.++.+.+++.
T Consensus 38 a~L~~A~d~~~~~s~~kg~~l~S~K~~FIVGADITEFl~~F~~p~~~L~~w~~~AN~~F~~lEDL--pvPT~aa~~G~aL 115 (716)
T TIGR02437 38 ASLDKALDALKAQSDLKGLLLTSGKDAFIVGADITEFLGLFAKPDEELLQWLEFANSVFNKLEDL--PVPTVAAVKGFAL 115 (716)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHCCCCC
T ss_conf 99999999986325741789860873688617489998752488789999998888887540368--8874554045334
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22321000111000130135345556530210245677742042255315521123466678999988777776666677
Q gi|254780747|r 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 (293)
Q Consensus 109 S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~ 188 (293)
.||.=.-.++|.-++.+++.+|.=- -|+||-+ .++-
T Consensus 116 GGG~E~~LAtD~R~~~~~~~IGLPE------------~KLGI~P---------GFGG----------------------- 151 (716)
T TIGR02437 116 GGGCECVLATDFRIADKTAKIGLPE------------TKLGIMP---------GFGG----------------------- 151 (716)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCC------------HHCCCCC---------CCCC-----------------------
T ss_conf 6417878760100036765326873------------0104568---------8987-----------------------
Q ss_pred HHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 89999851499988-998873498237889987798062389899999999
Q gi|254780747|r 189 FVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 189 f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293)
.|.==|-+-.+ .++-++.|+--.+++|++.|+||.+..-+.....+.
T Consensus 152 ---~VRlPR~iGaD~A~E~I~~Gk~~rAe~ALKvg~vDaVV~~~~L~~~A~ 199 (716)
T TIGR02437 152 ---TVRLPRVIGADSALEIIASGKEVRAEDALKVGLVDAVVKADKLEAAAL 199 (716)
T ss_pred ---CEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---440550113103678873574123034542124531045678999999
No 132
>pfam03572 Peptidase_S41 Peptidase family S41.
Probab=94.28 E-value=0.24 Score=28.45 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=53.6
Q ss_pred EEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHH----------------------
Q ss_conf 899997666238-699999999986189987999975-88888889999999999984----------------------
Q gi|254780747|r 38 VARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV---------------------- 93 (293)
Q Consensus 38 i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~---------------------- 93 (293)
|+.|.+..--.+ .+++.+.++++.+ .+++++||++ +.+||....+..+...+..-
T Consensus 2 IgYi~i~sf~~~~~~~~~~~l~~l~~-~~~~~lIiDlR~N~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T pfam03572 2 IGYLRIPSFSENTPEELAEALKELKK-KNVKGLILDLRGNPGGLLSAAVEIASLFLPDGTIVSTRDRIGDRPPNTTTQSS 80 (166)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCC
T ss_conf 89999674574349999999999987-79976999954799976899999997216889689996667875505740246
Q ss_pred ----CCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf ----14786799603323322321000111
Q gi|254780747|r 94 ----KNRKPVITEVHEMAASAGYLISCASN 119 (293)
Q Consensus 94 ----k~~kpvva~~~~~~~S~~Y~iAs~ad 119 (293)
.-++|+++.++..++|++=.+|.+..
T Consensus 81 ~~~~~~~~pv~vL~~~~t~SaaE~~a~~lk 110 (166)
T pfam03572 81 GERYLTKKPLVVLVNEGTASASEIFAGALK 110 (166)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 866557899999989997538999986575
No 133
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=93.80 E-value=0.55 Score=26.13 Aligned_cols=89 Identities=20% Similarity=0.158 Sum_probs=55.2
Q ss_pred EEEEEEEEEEECCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 2899997666238699---9999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r 37 HVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 (293)
Q Consensus 37 ~i~~i~i~G~I~~~~~---l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~ 113 (293)
...-+.+++++.+.+. +-+.++++..+ . ...+-+|||||++..+-++.+.|++. +--+.+.-...|+|+.-+
T Consensus 75 r~l~VvVse~~a~~da~sal~~lir~~G~y-~--~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v~s~A~CasaCpl 149 (245)
T COG3904 75 RQLPVVVSEPGANVDAASALGRLIRKAGLY-I--ATGVTLNSPGGSVAKACSMGKLIRED--GFDTAVDSGAMCASACPL 149 (245)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCCE-E--EEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHCCCHH
T ss_conf 535699737977834899999998556761-6--77778507998578887640144340--567224535555234526
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 00011100013013534
Q gi|254780747|r 114 ISCASNIIVAAETSLVG 130 (293)
Q Consensus 114 iAs~ad~I~a~p~s~vG 130 (293)
+-+.+-.-++.+.+.+|
T Consensus 150 ~fagGvrRvve~~ayiG 166 (245)
T COG3904 150 MFAGGVRRVVEDFAYIG 166 (245)
T ss_pred HHHCCEEEEECCCCEEE
T ss_conf 63125146612562355
No 134
>smart00245 TSPc tail specific protease. tail specific protease
Probab=93.64 E-value=0.57 Score=26.07 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=38.5
Q ss_pred CEEEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf 72899997666238-699999999986189987999975-888888899999999999
Q gi|254780747|r 36 PHVARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 36 ~~i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~ 91 (293)
+.|..|.+..--.. .+++.+.++++. +.+++++||++ +.|||....+.+|...+.
T Consensus 28 ~~igYi~i~~F~~~~~~~~~~al~~l~-~~~~~~LIlDLR~N~GG~~~~a~~ia~~f~ 84 (192)
T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLE-KTNVEGLILDLRNNPGGLLSAAIDVSSLFL 84 (192)
T ss_pred CCEEEEEEEEECHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 969999972507234999999999998-679968999957789987889999998633
No 135
>pfam01740 STAS STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=93.07 E-value=0.73 Score=25.39 Aligned_cols=67 Identities=16% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCCEEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCC-CCEE
Q ss_conf 787289999766623--869999999998618998799997588-888889999999999984147-8679
Q gi|254780747|r 34 NSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNR-KPVI 100 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~-kpvv 100 (293)
..|.+.++.++|.+. ....+.+.+.++..++..+.|+|++.. .--+.++...+....+++++. ++++
T Consensus 6 ~~~gv~vi~l~G~Ld~~~a~~~~~~l~~~~~~~~~~~vvlD~~~v~~iDssgl~~l~~~~~~~~~~g~~l~ 76 (106)
T pfam01740 6 EIPGILILRLDGPLDFANAEAFRERLLRAIEEGEIRHVILDLSGVPFIDSSGLGALLELYKELRRRGVELV 76 (106)
T ss_pred EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 76999999967689788999999999999865899789999708988890299999999999997699099
No 136
>PRK11186 carboxy-terminal protease; Provisional
Probab=92.95 E-value=0.65 Score=25.68 Aligned_cols=40 Identities=10% Similarity=0.389 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHH
Q ss_conf 699999999986189987999975-88888889999999999
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAI 90 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai 90 (293)
.+++...|.++.+ ++++|+||++ |.|||+...+.+|....
T Consensus 370 ~~dv~~~l~~Lk~-~~v~glIlDLRnNgGG~L~eAv~l~glF 410 (673)
T PRK11186 370 TDDVKKQLQKLEK-QNVEGIIIDLRGNGGGALTEAVSLSGLF 410 (673)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 7899999999986-6997699980579984389999999733
No 137
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=92.91 E-value=0.77 Score=25.24 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=42.8
Q ss_pred EEEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf 289999766623-8699999999986189987999975-888888899999999999
Q gi|254780747|r 37 HVARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 37 ~i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~ 91 (293)
.|..|.|..=-. ..+++.++|+++.+ ++++++||++ |.|||...++.+|.+..-
T Consensus 49 ~IGyI~i~~F~~~t~~~~~~al~~l~~-~g~~glIlDLR~NpGG~l~~av~ia~~Fl 104 (211)
T cd07560 49 PIGYIRITSFSENTAEELKKALKELKK-QGMKGLILDLRNNPGGLLDEAVEIADLFL 104 (211)
T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 639999425565219999999999997-69967999878999815999999999864
No 138
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=92.86 E-value=0.27 Score=28.09 Aligned_cols=99 Identities=15% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCEEEEEEEEEEECCH-----------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8728999976662386-----------------------99999999986189987999975888888899999999999
Q gi|254780747|r 35 SPHVARIAIRGQIEDS-----------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~-----------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~ 91 (293)
+..|+.|.=+|.+... =+--+.|+..++|++.+.|++++.+-- ....--+..+
T Consensus 153 ~G~Iaf~SQSGAl~~a~Ldwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~----DG~~Fl~~A~ 228 (457)
T TIGR02717 153 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAK 228 (457)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCC----CHHHHHHHHH
T ss_conf 887778971258999999999872781347782674111165778889853989408999717870----4168999988
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 84147867996033233223210001110001301353455565302102456777420
Q gi|254780747|r 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 (293)
Q Consensus 92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi 150 (293)
++.++||||++=.+....|+=-.+|| -+|+.||. --|+.+|++-|+
T Consensus 229 ~~s~~KPiv~lKsG~s~~GakAA~SH-------TGaLAGs~------~~y~aaf~q~G~ 274 (457)
T TIGR02717 229 EISKKKPIVVLKSGTSEAGAKAASSH-------TGALAGSD------EAYDAAFKQAGV 274 (457)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHC-------CCHHHHHH------HHHHHHHCCCCE
T ss_conf 86305988999368883456765210-------23133668------999987430143
No 139
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=91.80 E-value=1 Score=24.43 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999986189987999975888888-------89999999999984147867996033233223210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a 123 (293)
+.+.+..+.|.+. ++. +|.-.+|.|+. ..+...+..+..+++...|.++++.+.|+.++-|++..||.++|
T Consensus 79 ~Ki~~~~e~A~~~-~lP-~v~l~dsgG~r~~eg~~~l~~~g~i~~~~~~~s~~iP~is~v~G~~~GggA~~~~~sd~~im 156 (487)
T pfam01039 79 FKITRAMELAIKE-GEP-LIGINDSGGARIQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIM 156 (487)
T ss_pred HHHHHHHHHHHHC-CCC-EEEEEECCCEECCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCEEEE
T ss_conf 4479999999985-995-89998242403476313045311799999997499988999537886368888760871588
Q ss_pred CHH-HHHHHHH
Q ss_conf 301-3534555
Q gi|254780747|r 124 AET-SLVGSIG 133 (293)
Q Consensus 124 ~p~-s~vGsiG 133 (293)
... +.++.-|
T Consensus 157 ~~~~s~l~~aG 167 (487)
T pfam01039 157 VKGTSPMFLTG 167 (487)
T ss_pred ECCCCCEECCC
T ss_conf 21764332248
No 140
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=89.73 E-value=1.6 Score=23.19 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCCCEEEEEEEEEEE--CCHHHHHHHHHHHHCC-CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 778728999976662--3869999999998618-998799997588-888889999999999984147867996
Q gi|254780747|r 33 DNSPHVARIAIRGQI--EDSQELIERIERISRD-DSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITE 102 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I--~~~~~l~~~l~~a~~d-~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvva~ 102 (293)
...+.|.++.++|++ ...+.+.+.+.+...+ +..+.|+|+... +.-+.++.+.+.+.++++++.+-.+.+
T Consensus 5 ~~~~~v~i~~~~g~LfF~~~~~~~~~i~~~~~~~~~~~~vvld~~~v~~iD~s~~~~L~~~~~~~~~~g~~l~~ 78 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYL 78 (107)
T ss_pred CCCCCEEEEEECCEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 36898899995670676179999999999871589972999998499854759999999999999977999999
No 141
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=89.50 E-value=1.7 Score=23.08 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=48.3
Q ss_pred EEEEEEEEEEECC-----HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHH------------------
Q ss_conf 2899997666238-----699999999986189987999975-8888888999999999998------------------
Q gi|254780747|r 37 HVARIAIRGQIED-----SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK------------------ 92 (293)
Q Consensus 37 ~i~~i~i~G~I~~-----~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~------------------ 92 (293)
.|+.|++++-... ...+-+.++..++ .+++|+++ +.+||+...+..|...+..
T Consensus 64 ~IGYL~i~~f~~~~~~~~~~~l~~al~~l~~---~~~LIIDLR~N~GG~~~~~~~las~f~~~~~~~~~~~~~~~~~~~~ 140 (250)
T cd07563 64 YIGYLRIDSFGGFEIAAAEALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTT 140 (250)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf 8689998501874543039999999997338---9879999689999977899999998668993799999883798764
Q ss_pred -------------HCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf -------------41478679960332332232100011
Q gi|254780747|r 93 -------------VKNRKPVITEVHEMAASAGYLISCAS 118 (293)
Q Consensus 93 -------------~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293)
.+-+|||++.++...+|++=..|.+.
T Consensus 141 ~~~~~~~~~p~~~~~~~~pv~vLt~~~t~SaaE~fa~~l 179 (250)
T cd07563 141 TELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAYAL 179 (250)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 123211246665545789999997899620999999999
No 142
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=88.65 E-value=1.9 Score=22.70 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH----HHHHHCCCCCEEEEECCCCCCC
Q ss_conf 699999999986189987999975888888899999999----9998414786799603323322
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFR----AIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~----ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.+.+.++|+-.-.|++||+|+++|= |+..-|+.+++ +++..+..-|+|+=..+.-.--
T Consensus 295 ~e~v~eA~~~vLsD~~VKvvfiNIF---GGI~RCD~vA~G~v~A~~~~~~~VP~VvRL~GTN~E~ 356 (389)
T TIGR01016 295 EERVKEALKLVLSDKSVKVVFINIF---GGITRCDEVAKGLVEALKDVGVNVPVVVRLEGTNVEE 356 (389)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEC---CCEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
T ss_conf 8999999898735998208999706---8600187887889999831885368789815788788
No 143
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=88.55 E-value=1.9 Score=22.75 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEE--CCCCC----C------CHHHHHHHHHHHHH--H--C----CCCCEE-EEECC-
Q ss_conf 3869999999998618998799997--58888----8------88999999999998--4--1----478679-96033-
Q gi|254780747|r 48 EDSQELIERIERISRDDSATALIVS--LSSPG----G------SAYAGEAIFRAIQK--V--K----NRKPVI-TEVHE- 105 (293)
Q Consensus 48 ~~~~~l~~~l~~a~~d~~ik~ivL~--i~SpG----G------~~~~~~~i~~ai~~--~--k----~~kpvv-a~~~~- 105 (293)
.+.++..+..++....+ +|+. +...| | ++..+.+.++.+-. + + +++||- ++++.
T Consensus 26 ~~~~ea~~~~~~l~~~~----~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~QTg~~G~~V~~vlvee~ 101 (388)
T PRK00696 26 FTPEEAVEAAEELGGPV----WVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQTGPEGQPVNRLLIEEG 101 (388)
T ss_pred CCHHHHHHHHHHHCCCC----EEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCEEEEEEEEEC
T ss_conf 99999999999829995----89998054588886860799089999999999985677421015888844479998751
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--------CCCCHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466--------6789999887
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--------SEVNPKAVQM 177 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--------~~~s~e~~~~ 177 (293)
.-..--||++..-|+-...|.=+...-| ..+..+.-++--=+...+...+.+.. .+| -.++.+..+.
T Consensus 102 ~~i~~E~Ylsi~~DR~~~~~~~i~S~~G----G~dIEevA~~~Pe~I~k~~idp~~gl-~~~~~r~i~~~lgl~~~~~~~ 176 (388)
T PRK00696 102 ADIAKELYLSAVVDRATRRVVFMASTEG----GMEIEEVAEETPEKIHKVAVDPLVGL-QPYQAREIAFKLGLPGEQVKQ 176 (388)
T ss_pred CCHHHHEEEEEEEECCCCCEEEEEECCC----CCCHHHHHHHCHHHEEEEECCCCCCC-CHHHHHHHHHHCCCCHHHHHH
T ss_conf 6612406899998647785799998887----98799986529123899975777798-999999999982999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 777766666778999
Q gi|254780747|r 178 MQDVVDSSYHWFVRL 192 (293)
Q Consensus 178 ~~~~l~~~~~~f~~~ 192 (293)
+..++..+|..|.+.
T Consensus 177 ~~~ii~~Ly~~F~~~ 191 (388)
T PRK00696 177 AVKIFMGLYKAFVEK 191 (388)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999965
No 144
>KOG1684 consensus
Probab=87.92 E-value=2.2 Score=22.41 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=68.6
Q ss_pred EEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHHHHHH----------------
Q ss_conf 289999766623----8---69999999998618998799997588-----8888899999999----------------
Q gi|254780747|r 37 HVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGEAIFR---------------- 88 (293)
Q Consensus 37 ~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~~i~~---------------- 88 (293)
...+|.++-|=. + ...+...|..-+.++.++.||+.=++ .||++....++..
T Consensus 47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684 47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred CEEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 44689946822301033888998899887540277721899916898601458657889887624895588999999999
Q ss_pred HHHHHCC-CCCEEEEECCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9998414-78679960332332232100011-------100013013534555653021024567774
Q gi|254780747|r 89 AIQKVKN-RKPVITEVHEMAASAGYLISCAS-------NIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 (293)
Q Consensus 89 ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~a-------d~I~a~p~s~vGsiGv~~~~~~~~~ll~k~ 148 (293)
.+..+.. .||.|+.+++....||.-++.++ +.++|-|.+.+|..-=++..+++..+..++
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~l 194 (401)
T KOG1684 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYL 194 (401)
T ss_pred HHHHHHHHCCCEEEEEECEEECCCCCEEECCEEEEEECCCEECCCCCCCCCCCCCCCEEEHHHCCCHH
T ss_conf 99999874376378750424237764031240687531412216643332255764002253176578
No 145
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales , and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=87.15 E-value=1.5 Score=23.32 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE-EECCCCCCC----CCCCCCCCC
Q ss_conf 99999999861899879999758888888999999999998414786799-603323322----321000111
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVIT-EVHEMAASA----GYLISCASN 119 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva-~~~~~~~S~----~Y~iAs~ad 119 (293)
+++++|.+|.. ..+.|||+. ||+-...|-.|||||... +.|+|= -..+.-+-- .-|+|-.|+
T Consensus 56 ~L~d~Ih~a~g-~~~~GiviN---pgA~THtSvAlRDA~~~v--~~P~vEVHlSNvhaREeFRh~S~~a~va~ 122 (144)
T TIGR01088 56 ELIDKIHEALG-QDYDGIVIN---PGAYTHTSVALRDALAAV--SLPVVEVHLSNVHAREEFRHHSYIAPVAK 122 (144)
T ss_pred HHHHHHHHHHC-CCCCEEEEC---CCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 89999998723-886537878---731013679999999970--39868985166512664010454222035
No 146
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.88 E-value=2 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2346667899998877777666667
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~ 187 (293)
.-||+..+.+..+..+..++..+++
T Consensus 168 LDEPTs~LDp~~~~~i~~ll~~l~~ 192 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9588555899999999999999995
No 147
>PRK09483 response regulator; Provisional
Probab=85.89 E-value=2.8 Score=21.71 Aligned_cols=168 Identities=15% Similarity=0.218 Sum_probs=85.5
Q ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf 9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA 117 (293)
Q Consensus 41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ 117 (293)
+.+-|...+.++.++.+++ ....-++++++-||.+. -++...|++....-||+++... . +..|. +.+.
T Consensus 27 ~~vv~~a~~~~~~l~~~~~----~~pDvvllDl~lp~~~G---l~~~~~i~~~~p~~~vivls~~-~-~~~~~~~al~~G 97 (216)
T PRK09483 27 IKVVGEASCGEDAVKWCRT----NAVDVVLMDMNMPGIGG---LEATRKILRSTPDVKIIMLTVH-T-ENPLPAKVMQAG 97 (216)
T ss_pred CEEEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCC---HHHHHHHHHHCCCCCEEEECCC-C-CHHHHHHHHHCC
T ss_conf 5899998999999999985----59999998688989875---2377888740899857863056-6-328899999748
Q ss_pred CCCCCC---CHHHHHHHHH-HHHCCCHHH-HHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110001---3013534555-653021024-56777420422553155211234666789999887777766666778999
Q gi|254780747|r 118 SNIIVA---AETSLVGSIG-VLFQYPYVK-PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 118 ad~I~a---~p~s~vGsiG-v~~~~~~~~-~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
|+-++. ++..++..+- +.....++. .+...+.... ......+|+..+|+.+++.++-+.++.- ...
T Consensus 98 a~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~LT~RE~eVl~ll~~G~s---nke 168 (216)
T PRK09483 98 AAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQ------FEPATENPFASLSERELQIMLMITKGQK---VNE 168 (216)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHH
T ss_conf 8789947999999999999998599706989999998732------3765456545689999999999987999---999
Q ss_pred HHHCCCCCHHHHHHHHC---------CCCCCHHHHHHCCCCCC
Q ss_conf 98514999889988734---------98237889987798062
Q gi|254780747|r 193 VSESRNIPYDKTLVLSD---------GRIWTGAEAKKVGLIDV 226 (293)
Q Consensus 193 Va~~R~~~~~~~~~~~~---------g~~~~~~~A~~~GLvD~ 226 (293)
||+.-+++...++.... .+.=...-|.++||||.
T Consensus 169 IA~~L~iS~~TV~~h~~~i~~KL~v~~r~el~~~A~~~gli~~ 211 (216)
T PRK09483 169 ISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGLLNA 211 (216)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCH
T ss_conf 9999698999999999999998099999999999999599188
No 148
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=85.88 E-value=2.8 Score=21.71 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=51.2
Q ss_pred CCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCHHHHHHHHHHHHH-------HC----------
Q ss_conf 778728999976662386999999999861899879999758-888888999999999998-------41----------
Q gi|254780747|r 33 DNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLS-SPGGSAYAGEAIFRAIQK-------VK---------- 94 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~-SpGG~~~~~~~i~~ai~~-------~k---------- 94 (293)
...+.|..|.|... +...+.+.++.+....+.+|+||++- .+||.++ ..|.+.+.+ .|
T Consensus 84 ~s~g~iGYl~i~~~--~~~~~~~~~~~~~~~~~~~glIiDlR~N~GG~~~--~~l~~~l~~~~~~~~~~R~~~~~~~~p~ 159 (266)
T cd07562 84 LSDGRIGYVHIPDM--GDDGFAEFLRDLLAEVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVTYPS 159 (266)
T ss_pred CCCCCEEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH--HHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 57995899997878--9078999999998616887499983578985089--9999995678428994268887788865
Q ss_pred --CCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf --4786799603323322321000111
Q gi|254780747|r 95 --NRKPVITEVHEMAASAGYLISCASN 119 (293)
Q Consensus 95 --~~kpvva~~~~~~~S~~Y~iAs~ad 119 (293)
-.||+++.++..++|+|=..|.+..
T Consensus 160 ~~~~gP~vvLv~~~t~S~aE~fa~~~~ 186 (266)
T cd07562 160 GRWRGPVVVLVNEGSASDAEIFAYGFR 186 (266)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 467899999989998648999999998
No 149
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.86 E-value=2.7 Score=21.79 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999999861899879999758888888999999999998414786799603323322321000111000130135345
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs 131 (293)
+.+.--...+.+|.+ ++|+=-+-|-++...+++.+.|+++++.+..+..+.+.. -.++..||+|+.=..+.+=.
T Consensus 145 qRvaiA~aL~~~P~l--liLDEPtagLDp~~~~~l~~~l~~L~~~G~Tvi~vtHdl----~~~~~~aDrvivl~~G~Iv~ 218 (273)
T PRK13647 145 KRVAIAGVLAMEPDI--IVLDEPMAYLDPRGKEELTAILNRLNNEGKTVIVATHDV----DLALEWADQVVVLNAGRVVA 218 (273)
T ss_pred HHHHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHCCEEEEEECCEEEE
T ss_conf 999999999819999--999797657999999999999999984899999994178----99999699999998999999
Q ss_pred HHHHHCCCHHHHHHHHHHHCCE
Q ss_conf 5565302102456777420422
Q gi|254780747|r 132 IGVLFQYPYVKPFLDKLGVSIK 153 (293)
Q Consensus 132 iGv~~~~~~~~~ll~k~gi~~~ 153 (293)
-|-- +.+.-.+++++.|+.+-
T Consensus 219 ~Gtp-~~~~~~~~l~~~gl~~P 239 (273)
T PRK13647 219 QGDK-SILTDRQLLEEAGLKAP 239 (273)
T ss_pred ECCH-HHHCCHHHHHHCCCCCC
T ss_conf 8294-79399999998699998
No 150
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.21 E-value=3.1 Score=21.41 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999986189987999975888888899999999999841478679960332332232100011100013013534
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG 130 (293)
++.+.--+....++++ ++|+=-+-|-++....++.+.|+++++.+..+.++.+.. -.++..||+|+.=..+.+=
T Consensus 142 kQrv~iAraL~~~P~l--LlLDEPtagLD~~~~~~i~~ll~~l~~~G~tiiivsHdl----~~v~~~aDrv~vl~~G~iv 215 (271)
T PRK13638 142 KKRVAIAGALVLQARY--LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI----DLIYEISDAVYVLRQGQIL 215 (271)
T ss_pred HHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHHCCEEEEEECCEEE
T ss_conf 9999999999659998--998387545899999999999999997899999984888----9999969999999899899
Q ss_pred HHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 5556530210245677742042
Q gi|254780747|r 131 SIGVLFQYPYVKPFLDKLGVSI 152 (293)
Q Consensus 131 siGv~~~~~~~~~ll~k~gi~~ 152 (293)
.-|.--+.+.-.++++..|++.
T Consensus 216 a~Gtp~ev~~~~~~~~~~g~~~ 237 (271)
T PRK13638 216 THGAPGEVFACTEAMEQAGLTQ 237 (271)
T ss_pred EECCHHHHHCCHHHHHHCCCCC
T ss_conf 9868999968989999769999
No 151
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.01 E-value=3.2 Score=21.35 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=8.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..++..+
T Consensus 167 EPTagLDp~~~~~i~~ll~~l 187 (285)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEM 187 (285)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 875559999999999999999
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.97 E-value=3.3 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=9.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..++.++
T Consensus 163 EPTagLDp~~~~~i~~ll~~l 183 (275)
T PRK13639 163 EPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 975548999999999999999
No 153
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.62 E-value=2.4 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=15.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2346667899998877777666667
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~ 187 (293)
.-||+..+.+..++.+..++.++.+
T Consensus 200 lDEPTagLDp~~~~~i~~li~~l~~ 224 (320)
T PRK13631 200 FDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7587555998999999999999996
No 154
>KOG1255 consensus
Probab=81.17 E-value=4.3 Score=20.50 Aligned_cols=44 Identities=23% Similarity=0.454 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999986189987999975888888899999999999841478679960
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
+-.....|.++-...+-++.+--| .++..|.++|. +..|.++.+
T Consensus 83 VF~sV~eA~~~t~a~AsvIyVPpp----~Aa~aI~eaie---aEipLiVcI 126 (329)
T KOG1255 83 VFNSVAEAKKETGADASVIYVPPP----FAAAAIEEAIE---AEIPLIVCI 126 (329)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCH----HHHHHHHHHHH---CCCCEEEEE
T ss_conf 566799998740898349980782----78899999885---448679996
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.13 E-value=4.4 Score=20.49 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=13.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 234666789999887777766666
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSY 186 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~ 186 (293)
.-||+..+.+..++.+..++..+.
T Consensus 169 lDEPTsgLDp~~~~~i~~ll~~l~ 192 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTIFKKLH 192 (280)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 848755489999999999999998
No 156
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.45 E-value=4.6 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=9.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..++.++
T Consensus 171 EPTagLDp~~~~~i~~ll~~l 191 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 874438989999999999999
No 157
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=80.02 E-value=4.7 Score=20.26 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCCEEEEEEEEEEECCH-HHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 78728999976662386-99999999986189987999975-88888889999999999984147867996
Q gi|254780747|r 34 NSPHVARIAIRGQIEDS-QELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITE 102 (293)
Q Consensus 34 ~~~~i~~i~i~G~I~~~-~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~ 102 (293)
...+|.-|..+.=..+. +++.+.+.+ -++.+|+.+||++ ..+||.+..+..|+..|...-..+.+...
T Consensus 62 gg~kIGYl~yn~F~~~~~~~L~~~f~~-fk~~gv~~LIlDLRYNgGG~v~~a~~las~i~~~~~~~~~f~~ 131 (256)
T cd07561 62 GGKKVGYLVYNSFTSGYDDELNQAFAE-FKAQGVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFAT 131 (256)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 996899999657575445999999999-9876997699981218982799999999875276757978999
No 158
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=79.96 E-value=4.8 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2346667899998877777666667
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~ 187 (293)
.-||+..+.+..++.+..++..+++
T Consensus 185 LDEPTagLDp~~~~~i~~~l~~L~~ 209 (304)
T PRK13651 185 FDEPTAGLDPQGVKEILEIFDTLNK 209 (304)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7298665898999999999999997
No 159
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=78.06 E-value=5.4 Score=19.88 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=13.2
Q ss_pred HCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCC
Q ss_conf 51499988998873498237889987798062
Q gi|254780747|r 195 ESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDV 226 (293)
Q Consensus 195 ~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ 226 (293)
+++|++.+..+.+.....+.|-..++.|=+|.
T Consensus 88 ~rkG~~~~~a~~~~~~~~~~aa~mv~~G~aD~ 119 (319)
T pfam01515 88 KHKGMTPEIAREIVRDPTYFAAMLVKLGEADG 119 (319)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 23899999999999766999999997789887
No 160
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.04 E-value=5.5 Score=19.88 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=14.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2346667899998877777666667
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~ 187 (293)
.-||+..+.+..++.+..++..+.+
T Consensus 169 LDEPTsgLDp~~~~~i~~ll~~l~~ 193 (286)
T PRK13641 169 LDEPAAGLDPEGRKEMMQIFKDYQK 193 (286)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7397343899999999999999996
No 161
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=77.96 E-value=3.6 Score=21.03 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCC-----CCCCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999998618-----99879999758888--88899999999999841478679960
Q gi|254780747|r 52 ELIERIERISRD-----DSATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 52 ~l~~~l~~a~~d-----~~ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
.+...+++|-+. ++|.+|-.-. .|| |+.......++.+... -++|++..-
T Consensus 54 ~i~~lv~~al~~a~i~~~~id~IAvT~-gPGL~g~L~VG~~~Ak~La~~-~~~Pli~Vn 110 (335)
T PRK09604 54 ALPPLLEEALKEAGLSLEDIDAIAVTA-GPGLVGALLVGATAAKALALA-LNKPLIGVN 110 (335)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH-CCCCEEECC
T ss_conf 999999999986599987897899947-999611399999999999998-099824112
No 162
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=77.65 E-value=5.6 Score=19.81 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=11.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99975888888899999999999841
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~k 94 (293)
++|+=-+.|-++...++|.+.|++++
T Consensus 172 LiLDEPTsgLD~~~~~~i~~~l~~l~ 197 (252)
T CHL00131 172 AILDETDSGLDIDALKIIAEGINKLA 197 (252)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99979876699999999999999998
No 163
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=76.87 E-value=5.9 Score=19.67 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=41.8
Q ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999766623869999999998618998799997588888889999999999984147867996033
Q gi|254780747|r 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
+-++.....+.+.++..+..+.+.++ ++.+|++..-+-+-+ ......++++ ++|+..+...
T Consensus 37 ~~vv~~~~~~~~~~~~~~~~~~~~~~-~vdgli~~~~tf~~~----~~~~~~~~~~--~~Pvl~~~~~ 97 (452)
T cd00578 37 VEVVDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTFGPA----KMWIAGLSEL--RKPVLLLATQ 97 (452)
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCH----HHHHHHHHHC--CCCEEEEECC
T ss_conf 73998884048999999999998775-997999905866877----9999999857--9989999479
No 164
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.68 E-value=6 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23466678999988777776666677
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYHW 188 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~~ 188 (293)
.-||+..+.+..+..+...+..+++.
T Consensus 168 lDEPTs~LDp~~~~~i~~~l~~L~~e 193 (287)
T PRK13637 168 LDEPTAGLDPKGRDDILEKIKALHKE 193 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 83886648999999999999999985
No 165
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=75.27 E-value=6.5 Score=19.40 Aligned_cols=78 Identities=26% Similarity=0.352 Sum_probs=47.6
Q ss_pred EEEEEEEEEE-CCHH-HHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHH---------C-----------
Q ss_conf 8999976662-3869-9999999986189987999975-88888889999999999984---------1-----------
Q gi|254780747|r 38 VARIAIRGQI-EDSQ-ELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV---------K----------- 94 (293)
Q Consensus 38 i~~i~i~G~I-~~~~-~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~---------k----------- 94 (293)
|..|.++.-. .... .+.+.+....+ +++++||++ +.+||....+..+...+..- +
T Consensus 61 IGYl~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 138 (224)
T cd06567 61 IGYIRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPG 138 (224)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCC
T ss_conf 789997346884358999999998761--698799990899998899999999985699968999746788733874689
Q ss_pred ----CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf ----47867996033233223210001
Q gi|254780747|r 95 ----NRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 95 ----~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
..+|+++.+++..+|++=.+|.+
T Consensus 139 ~~~~~~~pv~vLt~~~TaSaaE~~a~~ 165 (224)
T cd06567 139 GGSLYDGPLVVLVNEGSASASEIFAGA 165 (224)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 874478989999899977489999999
No 166
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=74.94 E-value=6.6 Score=19.35 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf 6999999999861899879999758888888999999999998-414786799603323
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMA 107 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~-~k~~kpvva~~~~~~ 107 (293)
.+.+++-|++|+.||+|.+|=.-+-=.+.. |. |.++|-+ .+++|.|.+.++=.|
T Consensus 345 F~~vv~fl~~AA~DP~V~aIK~TLYR~a~~---S~-Iv~aLi~AA~nGK~VtvlVELkA 399 (678)
T pfam02503 345 FDPVVDFLRQAAADPDVLAIKQTLYRTSKD---SP-IVDALIEAAENGKQVTVLVELKA 399 (678)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCC---CH-HHHHHHHHHHCCCEEEEEEEECC
T ss_conf 127999999983799853787789852798---88-99999999982988999999733
No 167
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=73.24 E-value=7.3 Score=19.09 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=67.0
Q ss_pred CCCEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf 98799997588--------88888999999999998414-786799603323322321000-111000130135345556
Q gi|254780747|r 65 SATALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC-ASNIIVAAETSLVGSIGV 134 (293)
Q Consensus 65 ~ik~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs-~ad~I~a~p~s~vGsiGv 134 (293)
.-+-|+|.+.. .|-++.-.+.+++.|+++.. +..|-+.+++.-.--+|-.+. ..|+..+.. +|-...
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~---mGmlaT 80 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADY---MGMLAT 80 (238)
T ss_pred CEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHH---HHHHHH
T ss_conf 33799999421036478888879899999999999998669689999789789976789876985122468---889999
Q ss_pred HHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 5302102456777420422553155211234666
Q gi|254780747|r 135 LFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293)
Q Consensus 135 ~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293)
++.....+..|+++|++..+.+.-.+....+|+.
T Consensus 81 vmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~ 114 (238)
T COG0528 81 VMNALALQDALERLGVDTRVQSAIAMPQVAEPYS 114 (238)
T ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
T ss_conf 9999999999863587612213111766668667
No 168
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=72.78 E-value=4.9 Score=20.17 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCC-----CCCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999986189-----9879999758888--88899999999999841478679960
Q gi|254780747|r 51 QELIERIERISRDD-----SATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 51 ~~l~~~l~~a~~d~-----~ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
+.+...+++|-++. .|.+|- ....|| |+..-....++.|.. .-++|++..-
T Consensus 58 ~~i~~lv~~aL~~a~i~~~did~IA-vT~gPGL~g~L~VG~~~AK~La~-~~~~Pli~Vn 115 (348)
T PTZ00340 58 QHILSLVQEALEEAGITLSDISLIC-YTKGPGMGAPLAVGATVAKTLSL-LWGKPLVGVN 115 (348)
T ss_pred HHHHHHHHHHHHHCCCCHHCCCEEE-ECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEECC
T ss_conf 9999999999998599841185799-72799851658999999999999-8099835213
No 169
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=72.74 E-value=7.5 Score=19.02 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=9.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..+..+..++..+
T Consensus 171 EPTs~LDp~~~~~i~~~l~~l 191 (281)
T PRK13633 171 EPTAMLDPSGRREVVNTIKEL 191 (281)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 873438989999999999999
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.55 E-value=7.5 Score=18.99 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=5.7
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 79806238989999
Q gi|254780747|r 221 VGLIDVVGGQEEVW 234 (293)
Q Consensus 221 ~GLvD~ig~~~~a~ 234 (293)
.|=|-+-|+-+|+.
T Consensus 217 ~G~Iv~~Gtp~Evf 230 (269)
T PRK13648 217 KGTVYKEGTATEIF 230 (269)
T ss_pred CCEEEEECCHHHHH
T ss_conf 99999975899987
No 171
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=72.25 E-value=7.7 Score=18.94 Aligned_cols=136 Identities=10% Similarity=0.161 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 86999999999861899879999758888888999999999998414786799603323322321000111000130135
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+.++.++.+ +..+..-|+++++-||.+- -++...|++.....||+.+... . +..|.+.+ =-
T Consensus 35 ~~~~~l~~~----~~~~pdlvllDi~mP~~~G---~e~l~~l~~~~p~~~vivlT~~-~-~~~~~~~a----------l~ 95 (202)
T PRK09390 35 SAQAFLDAL----PGLRFGCVVTDVRMPGIDG---IELLRRLKARGSPLPVIVMTGH-G-DVPLAVEA----------MK 95 (202)
T ss_pred CHHHHHHHH----HCCCCCEEEECCCCCCCCC---HHHHHHHHHCCCCCCEEEEEEC-C-CHHHHHHH----------HH
T ss_conf 999999997----6579799987799999896---0799998722899867999745-7-48888999----------98
Q ss_pred HHHHHHHHCCCHHHHHHHHHH-----HCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 345556530210245677742-----042255315521123466678999988777776666677899998514999889
Q gi|254780747|r 129 VGSIGVLFQYPYVKPFLDKLG-----VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK 203 (293)
Q Consensus 129 vGsiGv~~~~~~~~~ll~k~g-----i~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~ 203 (293)
.|..|++.......++++.+. ............+..+.+..+|+.+++.++-+....- -..|++.-+++...
T Consensus 96 ~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~s---nkeIA~~L~iS~~T 172 (202)
T PRK09390 96 LGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEAVAADIRARIASLSERERQVMDGLVAGLS---NKVIARDLDISPRT 172 (202)
T ss_pred CCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC---HHHHHHHHCCCHHH
T ss_conf 294644559999999999999999715232421466788874006699899999999983896---89999997987889
Q ss_pred HHH
Q ss_conf 988
Q gi|254780747|r 204 TLV 206 (293)
Q Consensus 204 ~~~ 206 (293)
++.
T Consensus 173 V~~ 175 (202)
T PRK09390 173 VEV 175 (202)
T ss_pred HHH
T ss_conf 999
No 172
>PRK05443 polyphosphate kinase; Provisional
Probab=71.95 E-value=7.8 Score=18.90 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC
Q ss_conf 6999999999861899879999758888888999999999998-414786799603323
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK-VKNRKPVITEVHEMA 107 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~-~k~~kpvva~~~~~~ 107 (293)
.+.+++-|++|+.||+|.+|=.-+-=.++. |. |.++|-+ .+++|.|.+.++=.|
T Consensus 352 F~~vv~fl~~AA~DP~V~aIK~TLYR~a~~---S~-Iv~aLi~AA~nGK~VtvlVELkA 406 (692)
T PRK05443 352 FDPVVEFLRQAAADPDVLAIKQTLYRTSKD---SP-IVDALIEAAENGKQVTVLVELKA 406 (692)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCC---CH-HHHHHHHHHHCCCEEEEEEEECC
T ss_conf 479999999982799813898889842798---88-99999999982988999999733
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=71.71 E-value=7.9 Score=18.87 Aligned_cols=22 Identities=14% Similarity=0.068 Sum_probs=9.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3466678999988777776666
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
-||+..+.+..+..+.+++.++
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l 193 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
T ss_conf 1776558999999999999999
No 174
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=71.23 E-value=8.1 Score=18.80 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=48.0
Q ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 8999976662386999999999861899879999758888888999999999998414786799603323322321
Q gi|254780747|r 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 (293)
Q Consensus 38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~ 113 (293)
|--.+.+|.-.+ +-....++++++.-.++-+.+-+.+.+-+....++.++.+... .|||.+|+-...-|...|
T Consensus 31 IInnRPd~E~~~-qp~~~~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~~~--~~Pvl~~CrSG~Rs~~lw 103 (110)
T pfam04273 31 VINNRPDGEEPG-QPSNAAEQAAARAAGLAYRFIPVISGQITEADVEAFQRALAAA--EGPVLAHCRSGTRALNLY 103 (110)
T ss_pred EEECCCCCCCCC-CCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHH
T ss_conf 853388877789-9888999999998399799964477898999999999999858--998999889987799999
No 175
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=70.35 E-value=8.5 Score=18.68 Aligned_cols=94 Identities=7% Similarity=0.171 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEE-CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999999998618998799997588888889999999999984147-8679960-3323322321000111000130135
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEV-HEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~-kpvva~~-~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
++.+.--+..+.+|.+ ++|+=-+-|-++....+|.+.|+++++. +-.+.++ +++. . ++- ||+|+.=..+.
T Consensus 146 rQRvaIAraL~~~P~i--LilDEPTs~LD~~~~~~i~~~l~~L~~~~g~TvI~itHdl~-~----~~~-aDRiivm~~G~ 217 (279)
T PRK13635 146 KQRVAIAGVLALQPDI--LILDEATSMLDPQGRREVLETVRQLKEQKGITVLSITHDLD-E----AAQ-ADRVIVMNKGE 217 (279)
T ss_pred HHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHH-H----HHC-CCEEEEEECCE
T ss_conf 9999999999709998--99738745489899999999999999837989999976789-9----963-99899998999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 345556530210245677742042
Q gi|254780747|r 129 VGSIGVLFQYPYVKPFLDKLGVSI 152 (293)
Q Consensus 129 vGsiGv~~~~~~~~~ll~k~gi~~ 152 (293)
+=..|.--+.+.-.+.+++.|+..
T Consensus 218 Iv~~Gtp~elf~~~~~l~~~~l~~ 241 (279)
T PRK13635 218 ILEEGTPEEIFKSGHMLQEIGLDV 241 (279)
T ss_pred EEEECCHHHHHCCHHHHHHCCCCC
T ss_conf 999869999977988999779999
No 176
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=70.07 E-value=5.6 Score=19.82 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=56.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999758888888999999999998414--786799603323322321000111000130135345556530210245677
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~ 146 (293)
-||-+=+.||+ +--|..+|++..+ +.|+.+....+... -=+.--+|=|.+.| -+.+....++...+
T Consensus 48 ~iLl~CaaGms---tsLLv~~l~k~A~~~~~~~~i~A~~~~~~--~e~~~~~d~VlLaP-------Q~~~~~~~lk~~t~ 115 (142)
T TIGR00853 48 NILLLCAAGMS---TSLLVNKLNKAAKEYGVPVKIAAVSYGAA--MEILDDADVVLLAP-------QVAYMLPDLKKETD 115 (142)
T ss_pred EEEEEECCCCC---HHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHHCEEEEHH-------HHHHHHHHHHHHCC
T ss_conf 16888769735---47899999999984599758884057634--43353504311203-------26755799998513
Q ss_pred HHHHCCEEEEECCCC
Q ss_conf 742042255315521
Q gi|254780747|r 147 KLGVSIKSVKSSPMK 161 (293)
Q Consensus 147 k~gi~~~~~~~g~~K 161 (293)
+.||++.++..-.|-
T Consensus 116 ~~Gip~~~i~~~~Yg 130 (142)
T TIGR00853 116 KKGIPVEVINGAQYG 130 (142)
T ss_pred CCCCCEEEECCCCCE
T ss_conf 589753663870020
No 177
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=69.47 E-value=8.8 Score=18.56 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88889999999999984
Q gi|254780747|r 77 GGSAYAGEAIFRAIQKV 93 (293)
Q Consensus 77 GG~~~~~~~i~~ai~~~ 93 (293)
|-++....++.+.|+++
T Consensus 168 gLD~~~~~~i~~li~~l 184 (255)
T PRK11231 168 YLDINHQVELMRLMREL 184 (255)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 48999999999999999
No 178
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=69.27 E-value=8.9 Score=18.54 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=53.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH----HHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCHHHH--HHHH----
Q ss_conf 99879999758888888999999----99999841478679960332332232100-0111000130135--3455----
Q gi|254780747|r 64 DSATALIVSLSSPGGSAYAGEAI----FRAIQKVKNRKPVITEVHEMAASAGYLIS-CASNIIVAAETSL--VGSI---- 132 (293)
Q Consensus 64 ~~ik~ivL~i~SpGG~~~~~~~i----~~ai~~~k~~kpvva~~~~~~~S~~Y~iA-s~ad~I~a~p~s~--vGsi---- 132 (293)
..|+-| |-|.|.+-...|+-|- .+|++.+|..+--++.++..-|. -+-. ..||+||..|-+. |--|
T Consensus 4 ~~i~kv-LviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpAT--imTD~~~AD~vY~ePlT~e~V~~IIEKE 80 (1089)
T TIGR01369 4 TDIKKV-LVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPAT--IMTDPEMADKVYIEPLTPEAVEKIIEKE 80 (1089)
T ss_pred CCCCEE-EEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 888789-9966673113120230247899999987649579997588472--3388668660025254588886665316
Q ss_pred ---HHH----HC-------CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf ---565----30-------21024567774204225531552112346667-899998877777666667
Q gi|254780747|r 133 ---GVL----FQ-------YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE-VNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 133 ---Gv~----~~-------~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~-~s~e~~~~~~~~l~~~~~ 187 (293)
|+. +| -..-++.|+|+||++- |.|.+- ..-||||..++.++.+..
T Consensus 81 RPDgiL~t~GGQTALNlav~L~~~GVL~kYgV~vL----------GT~~eaI~kaEDRe~F~~~M~ei~~ 140 (1089)
T TIGR01369 81 RPDGILPTLGGQTALNLAVELEESGVLEKYGVEVL----------GTPVEAIKKAEDRELFREAMKEIGE 140 (1089)
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHCCCCHHHCCEEE----------CCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 86600025760357777886620685145291785----------2342435202027999999997389
No 179
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=67.97 E-value=9.5 Score=18.37 Aligned_cols=67 Identities=4% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCEEEEEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 872899997666238--6999999999861899879999758888-888999999999998414-786799
Q gi|254780747|r 35 SPHVARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKN-RKPVIT 101 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~-~kpvva 101 (293)
.+.+.++.+.|.+-. ..++.+.+..+-.+..++.|++++...- -+.++...+-...+.++. +++++.
T Consensus 6 ~d~~lVv~l~GelD~~ta~~lr~~l~~~i~~~~~~~iVvDls~v~f~DSsGl~~Ll~~~k~~~~~Gg~l~l 76 (100)
T cd06844 6 VDDYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVL 76 (100)
T ss_pred ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999779983888999999999999738997899987688188478999999999999966998999
No 180
>pfam01220 DHquinase_II Dehydroquinase class II.
Probab=67.19 E-value=9.8 Score=18.27 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf 9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a 123 (293)
-++++.|.++.+ +..||++. ||+-...+-.|+++|..+ +.|++=. +.+..+-. --+++-.|+-.++
T Consensus 54 geiId~I~~a~~--~~dgiIiN---pga~THtS~ai~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~ 124 (140)
T pfam01220 54 GELIDWIHEARG--DVDGIIIN---PAAYTHTSVALRDALAAV--GIPVIEVHLSNIHAREEFRHHSYISPVATGVIC 124 (140)
T ss_pred HHHHHHHHHHHC--CCCEEEEC---CCHHEEHHHHHHHHHHHC--CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 999999999754--47689985---621011026679999864--999899962781332542335641630349996
No 181
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.84 E-value=10 Score=18.23 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=10.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34666789999887777766666
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSY 186 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~ 186 (293)
-||+..+.+..++.+..++..++
T Consensus 169 DEPTs~LD~~~~~~i~~~l~~l~ 191 (283)
T PRK13640 169 DESTSMLDPAGKEQILKLIRKLM 191 (283)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 68745489899999999999999
No 182
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=66.33 E-value=2.3 Score=22.20 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCC---CCCCCCC
Q ss_conf 3869999999998618998799997-58888888999999999998414--7867996033233223210---0011100
Q gi|254780747|r 48 EDSQELIERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLI---SCASNII 121 (293)
Q Consensus 48 ~~~~~l~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~i---As~ad~I 121 (293)
++.++-.+.++++- |+|-|+|+++ |..|-..+.-.+.|.+.=+ +. +-|++ |++..+++||++ -=.||=|
T Consensus 127 vd~dd~pe~~~k~i-d~nTKAvf~EtIgNP~~~v~Die~~a~~Ah--~~PhgvPli--VDNT~atpGYL~rPi~hGADIV 201 (434)
T TIGR01326 127 VDGDDDPEELEKAI-DENTKAVFAETIGNPALNVPDIEAVAEVAH--AHPHGVPLI--VDNTFATPGYLCRPIDHGADIV 201 (434)
T ss_pred ECCCCCHHHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCCCEEE--EECCCCCCCCCCCHHHCCCCEE
T ss_conf 27888878999760-667518984012387767678589999998--678983488--7478687641006456498679
Q ss_pred CCCHHHHHH
Q ss_conf 013013534
Q gi|254780747|r 122 VAAETSLVG 130 (293)
Q Consensus 122 ~a~p~s~vG 130 (293)
+-+-+=.+|
T Consensus 202 vhSaTK~iG 210 (434)
T TIGR01326 202 VHSATKYIG 210 (434)
T ss_pred EEEECCCCC
T ss_conf 961001012
No 183
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=65.76 E-value=10 Score=18.09 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=42.9
Q ss_pred CEEEEECCCCC-CC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--------
Q ss_conf 67996033233-22-321000111000130135345556530210245677742042255315521123466--------
Q gi|254780747|r 98 PVITEVHEMAA-SA-GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-------- 167 (293)
Q Consensus 98 pvva~~~~~~~-S~-~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~-------- 167 (293)
+...+++..+. -. -||++..-|+---.|.-+..+-| ..+..+..++-==+...++.-+.+.. .||
T Consensus 90 v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eG----GmDIEeVa~~~PekI~~~~idp~~g~-~~~~aR~la~~ 164 (387)
T COG0045 90 VNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEG----GMDIEEVAEKTPEKIVKVSVDPLTGL-RPYQARELAFK 164 (387)
T ss_pred EEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCC----CCCHHHHHHHCHHHEEEEEECCCCCC-CHHHHHHHHHH
T ss_conf 42899974677764337999999737783799996677----95189950028345268974776687-87799999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6789999887777766666778999
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
-.++.+..+++..++..+|+-|.+.
T Consensus 165 lgl~~~~~~~~~~ii~~ly~~f~~~ 189 (387)
T COG0045 165 LGLEGELVKQVADIIKKLYKLFVEK 189 (387)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4998789999999999999999975
No 184
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.74 E-value=10 Score=18.09 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=17.5
Q ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9986189987999975888888899999999999841
Q gi|254780747|r 58 ERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 58 ~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k 94 (293)
...+.+|++ ++|+=-+.|-++....++.+.|++++
T Consensus 156 ~aLa~~P~i--liLDEPTs~LD~~~~~~l~~~l~~l~ 190 (273)
T PRK13632 156 SVLALNPEI--IIFDESTSMLDPKGKREIKKIMVDLR 190 (273)
T ss_pred HHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999719999--99807755699899999999999999
No 185
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.51 E-value=11 Score=18.06 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=10.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34666789999887777766666
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSY 186 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~ 186 (293)
-||+..+.+..+..+..++..++
T Consensus 157 DEPTs~LD~~~~~~i~~ll~~L~ 179 (276)
T PRK13634 157 DEPTAGLDPKGRKEIMEMFYKLH 179 (276)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 69854279999999999999999
No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=65.10 E-value=11 Score=18.01 Aligned_cols=25 Identities=0% Similarity=0.025 Sum_probs=9.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9997588888889999999999984
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKV 93 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~ 93 (293)
++|+=-+-|-++....++.+.|+++
T Consensus 165 llLDEPts~LD~~~~~~i~~~i~~l 189 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9981887668999999999999999
No 187
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=64.82 E-value=5.6 Score=19.78 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=30.1
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCCCC
Q ss_conf 9999986189987999975-888888899999999999841478679960332332232--100011100
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY--LISCASNII 121 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y--~iAs~ad~I 121 (293)
+.++++- +++.|.|+++- .+|...+.-...|.+.-++ .+ +...+++..++.-. -+...||-+
T Consensus 134 ~~~~~~i-~~~Tkli~~Esp~NP~l~v~Di~~i~~ia~~--~g--~~~vVDNT~atP~~~~Pl~~GaDiV 198 (386)
T PRK07811 134 DAVRAAI-TPRTKLIWVETPTNPLLSITDIAAIAELAHD--AG--AKVVVDNTFASPYLQQPLALGADVV 198 (386)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHH--CC--CEEEEECCCCCCCEECHHHHCCCEE
T ss_conf 8898655-8883499997799987640585899999985--57--8188316733520425234079879
No 188
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=64.44 E-value=11 Score=17.94 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=40.0
Q ss_pred EEEEEEEEEEECCHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCHHHHH------HHHHHHHHHCCCCCEEEEE
Q ss_conf 289999766623869999999-------998618998799997588888889999------9999999841478679960
Q gi|254780747|r 37 HVARIAIRGQIEDSQELIERI-------ERISRDDSATALIVSLSSPGGSAYAGE------AIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 37 ~i~~i~i~G~I~~~~~l~~~l-------~~a~~d~~ik~ivL~i~SpGG~~~~~~------~i~~ai~~~k~~kpvva~~ 103 (293)
+|.++.+.|...+-.+.++.+ +...+-+++.|+++ |||..+... .+.+.|+++.+++|++--|
T Consensus 4 kIGVLaLQG~~~eH~~~l~~lg~~~~~Vr~~~dL~~idgLIi----PGGESTti~~ll~~~~L~~~l~~~~~~~Pv~GTC 79 (179)
T PRK13526 4 KVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVI----PGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTC 79 (179)
T ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHCCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEC
T ss_conf 899999628879999999987996899717888600775897----5997789999976755499999998589908861
Q ss_pred CC
Q ss_conf 33
Q gi|254780747|r 104 HE 105 (293)
Q Consensus 104 ~~ 105 (293)
-+
T Consensus 80 AG 81 (179)
T PRK13526 80 AG 81 (179)
T ss_pred CE
T ss_conf 20
No 189
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.60 E-value=11 Score=17.84 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=10.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99975888888899999999999841
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~k 94 (293)
++|+=-+-|-++....+|.+.+++++
T Consensus 158 LiLDEPTs~LD~~~~~~i~~~l~~L~ 183 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLH 183 (274)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99979866789999999999999998
No 190
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=63.14 E-value=12 Score=17.79 Aligned_cols=149 Identities=13% Similarity=0.216 Sum_probs=75.0
Q ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCC
Q ss_conf 997666238699999999986189987999975888888899999999999841478679960332332-2321000111
Q gi|254780747|r 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASN 119 (293)
Q Consensus 41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad 119 (293)
+.+-|...+.++.++.++. ....-++++++-||.+. -++.+.|++.....||+++....... ..-.+.+.|+
T Consensus 25 ~~vv~~~~~~~~~l~~~~~----~~pDvvllDl~lp~~~G---~~~~~~ir~~~~~~~viv~s~~~~~~~~~~a~~~Ga~ 97 (204)
T PRK09958 25 IEILAELTEGGSAVQRVET----LKPDIVIIDVDIPGVNG---IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGAN 97 (204)
T ss_pred CEEEEEECCHHHHHHHHHH----CCCCEEEEECCCCCCCC---HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCC
T ss_conf 9899997999999999874----39799999589999984---1678889872798059999724652114433526863
Q ss_pred CCCC---CHHHHHHHHHHHHC-CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001---30135345556530-2102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 120 IIVA---AETSLVGSIGVLFQ-YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 120 ~I~a---~p~s~vGsiGv~~~-~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
-.+. ++..++..|-.+.. ..++...+.+.-... -...+++..+|+.+++.++-+.+..- ...||+
T Consensus 98 g~l~K~~~~~~l~~aI~~v~~G~~~~~~~~~~~~~~~--------~~~~~~~~~Lt~RE~eVL~ll~~G~s---nkeIA~ 166 (204)
T PRK09958 98 GFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL--------TSDQQKLDSLSKQEISVMRYILDGKD---NNDIAE 166 (204)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC--------CCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHH
T ss_conf 7997899999999999999779970889999998631--------35631125689999999999986999---999998
Q ss_pred CCCCCHHHHHHH
Q ss_conf 149998899887
Q gi|254780747|r 196 SRNIPYDKTLVL 207 (293)
Q Consensus 196 ~R~~~~~~~~~~ 207 (293)
.-+++...++..
T Consensus 167 ~L~iS~~TV~~h 178 (204)
T PRK09958 167 KMFISNKTVSTY 178 (204)
T ss_pred HHCCCHHHHHHH
T ss_conf 978899999999
No 191
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=62.69 E-value=12 Score=17.74 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=15.3
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999861899879999758888888999999999998414
Q gi|254780747|r 56 RIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~ 95 (293)
-.+....+|.+ ++|+=-+-|-++...+.+.+.|+++++
T Consensus 156 iaral~~~P~l--llLDEPtsgLD~~~~~~i~~~i~~l~~ 193 (248)
T PRK09580 156 ILQMAVLEPEL--CILDESDSGLDIDALKIVADGVNSLRD 193 (248)
T ss_pred HHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999768998--999796223999999999999999983
No 192
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=61.66 E-value=12 Score=17.62 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCC
Q ss_conf 869999999998618998799997588888-8899999999999841478679960332---332232100011100013
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGG-SAYAGEAIFRAIQKVKNRKPVITEVHEM---AASAGYLISCASNIIVAA 124 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-~~~~~~~i~~ai~~~k~~kpvva~~~~~---~~S~~Y~iAs~ad~I~a~ 124 (293)
+-+..+++|+++.+ +-+=|+|+--|+- ++.+..+|.+.|.+++.+.|+||=++-. ...+.-..+-+++++=.|
T Consensus 40 D~~~tv~qi~~L~e---~GcdIVRvtVp~~e~a~A~~~I~~rL~al~~~vPLVADiHf~Ghk~~~~~~~~~~~v~kvRIN 116 (633)
T TIGR00612 40 DVDATVEQIRALEE---AGCDIVRVTVPDKESAEALEEIKERLQALGLNVPLVADIHFAGHKYKKAALAVAKGVAKVRIN 116 (633)
T ss_pred HHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEC
T ss_conf 08999999999997---199489996088467999999999998626888748873025661468999986117825437
Q ss_pred HH
Q ss_conf 01
Q gi|254780747|r 125 ET 126 (293)
Q Consensus 125 p~ 126 (293)
|+
T Consensus 117 PG 118 (633)
T TIGR00612 117 PG 118 (633)
T ss_pred CC
T ss_conf 87
No 193
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=61.31 E-value=5.1 Score=20.04 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=19.3
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S 109 (293)
.++++- +++.|.|++.- .+|...+.-...|.+.-++ ..+.+.+++..++
T Consensus 141 ~~~~ai-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~----~g~~~vVDNTfat 190 (398)
T PRK08249 141 QIEREI-AKGCDLLYLETPTNPTLKITDIRRLSAAAHE----VGALVVVDNTFAT 190 (398)
T ss_pred HHHHHC-CCCCEEEEEECCCCCCCEEECHHHHHHHHHH----CCCEEEEECCCCH
T ss_conf 999855-8886189984489997466647999999987----4996998477420
No 194
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=60.71 E-value=13 Score=17.52 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=4.9
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 46667899998877
Q gi|254780747|r 165 SPFSEVNPKAVQMM 178 (293)
Q Consensus 165 ~p~~~~s~e~~~~~ 178 (293)
||+..+.+..++.+
T Consensus 157 EPt~gLD~~~~~~i 170 (230)
T TIGR03410 157 EPTEGIQPSIIKDI 170 (230)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 85226999999999
No 195
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.62 E-value=14 Score=17.40 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2346667899998877777666667
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYH 187 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~ 187 (293)
.-||+..+.+..++.+..++..++.
T Consensus 174 lDEPTagLDp~~~~~i~~ll~~L~~ 198 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNK 198 (289)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9588764898999999999999999
No 196
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=59.21 E-value=14 Score=17.35 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf 9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a 123 (293)
-++++.|.++.+ +..|+++. |||-...+-.|++++..+ +.|++=. +.+..+-- --+++-.|+-.++
T Consensus 53 gelI~~I~~a~~--~~dgiIiN---pga~ThtSial~DAl~~~--~~P~vEVHlSNi~~RE~fR~~S~is~~~~g~I~ 123 (140)
T cd00466 53 GELIDWIHEARD--GADGIIIN---PGAYTHTSIALRDALAAV--SIPVIEVHISNIHAREEFRHHSVISPVATGVIA 123 (140)
T ss_pred HHHHHHHHHHHC--CCCEEEEC---CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHCCCCCCCCCCCHHHCEEEE
T ss_conf 999999999747--57589975---612200237779999864--999899963781111452225651531118997
No 197
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=59.11 E-value=5.8 Score=19.70 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=20.6
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S 109 (293)
.++++-+ ++.+.|++.- .+|-..+.-...|.+.-++ .+.++ .+++..++
T Consensus 150 ~~~~ai~-~~Tk~v~~EtpsNP~l~v~Di~aia~iA~~--~g~~~--vVDNTfaT 199 (406)
T PRK07810 150 QWEEALS-VPTQAVFFETPSNPMQSLVDIAAVTELAHA--AGAKV--VLDNVFAT 199 (406)
T ss_pred HHHHHCC-CCCEEEEEECCCCCCCEECCHHHHHHHHHH--CCCEE--EEECCCCC
T ss_conf 9997558-886289984489998561167999999997--49859--99788777
No 198
>PRK06234 methionine gamma-lyase; Provisional
Probab=59.01 E-value=7.2 Score=19.10 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCCEEE
Q ss_conf 245677742042255
Q gi|254780747|r 141 VKPFLDKLGVSIKSV 155 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~ 155 (293)
++..+.++||++..+
T Consensus 120 ~~~~l~~~Gi~~~~v 134 (399)
T PRK06234 120 LNHGLTRYGVEVTFV 134 (399)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 998865168578862
No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=58.54 E-value=14 Score=17.28 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=8.2
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 4666789999887777766
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVD 183 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~ 183 (293)
||+..+.+..++.+..++.
T Consensus 166 EPtsgLD~~~~~~i~~ll~ 184 (257)
T PRK13548 166 EPTSALDLAHQHHVLRLAR 184 (257)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 9876689999999999999
No 200
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.85 E-value=14 Score=17.21 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=12.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99975888888899999999999841
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~k 94 (293)
++|+=-+.|-++....++.+.|++++
T Consensus 159 LilDEPTs~LD~~~~~~i~~~l~~l~ 184 (276)
T PRK13650 159 IILDEATSMLDPEGRLELIKTIKNIR 184 (276)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99838866589999999999999999
No 201
>PRK12443 uridylate kinase; Reviewed
Probab=57.71 E-value=15 Score=17.19 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC-CCCCCCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 8799997588--------88888999999999998414-78679960332-33223210-00111000130135345556
Q gi|254780747|r 66 ATALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM-AASAGYLI-SCASNIIVAAETSLVGSIGV 134 (293)
Q Consensus 66 ik~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~-~~S~~Y~i-As~ad~I~a~p~s~vGsiGv 134 (293)
-|-|+|.+.. -|-+....+.|.+.|+.+.. +..|-..+++. -.-| +-. ...-|+..+.. +|-.+.
T Consensus 4 ykRVllKlSGEaL~g~~~~g~d~~~l~~ia~eI~~~~~~G~evaiVvGGGNi~RG-~~~~~~gidr~~aD~---iGMLaT 79 (247)
T PRK12443 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG-HLAEEWGIDRVEADN---IGTLGT 79 (247)
T ss_pred CCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-HHHHHCCCCCCHHHH---HHHHHH
T ss_conf 6789999738882899988879999999999999999779879999768850232-236553987310368---889999
Q ss_pred HHCCCHHHHHH-HHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 53021024567-774204225531552112346667
Q gi|254780747|r 135 LFQYPYVKPFL-DKLGVSIKSVKSSPMKAEPSPFSE 169 (293)
Q Consensus 135 ~~~~~~~~~ll-~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293)
+++...+++.| ++.|++..+.++=+.....|||.+
T Consensus 80 vmNal~L~~~l~~~~g~~~rv~sai~~~~v~e~y~~ 115 (247)
T PRK12443 80 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIR 115 (247)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH
T ss_conf 999999999999755994699732336745677778
No 202
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=57.17 E-value=15 Score=17.14 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCC------CCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCC
Q ss_conf 9999999998618998799997588------88888999999999998414--78679960332332
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSS------PGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAAS 109 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~S------pGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S 109 (293)
++..+.++....| ++.+|+|+ |+|+..-+..+.+.|+++.+ +.||++==-+..-|
T Consensus 139 ~~~~~aid~i~Ad----AL~iHlN~~QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S 201 (349)
T TIGR02151 139 EEAQEAIDMIEAD----ALAIHLNVLQELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGIS 201 (349)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999999875101----33554323302557999701565389999999965289879982157998
No 203
>PRK09028 cystathionine beta-lyase; Provisional
Probab=56.59 E-value=8.5 Score=18.65 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=11.4
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHH
Q ss_conf 999986189987999975-88888889999999
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIF 87 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~ 87 (293)
.++++- +++.|.|++.- .+|...+.-...|.
T Consensus 138 ~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia 169 (394)
T PRK09028 138 GIRELI-RPNTKVLFLESPGSITMEVQDVPTLS 169 (394)
T ss_pred HHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 998536-87726999955899875236899999
No 204
>PRK07232 malic enzyme; Reviewed
Probab=56.32 E-value=15 Score=17.05 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.1
Q ss_pred HHHHHHCCCCCC--CCCHHHHHHHHHHHCCC
Q ss_conf 889987798062--38989999999974187
Q gi|254780747|r 215 GAEAKKVGLIDV--VGGQEEVWQSLYALGVD 243 (293)
Q Consensus 215 ~~~A~~~GLvD~--ig~~~~a~~~l~~~~~~ 243 (293)
+++.++.|++.= ||..+...+.+.+++..
T Consensus 457 A~~~~~EGIa~PILlGr~~~I~~~a~elGL~ 487 (753)
T PRK07232 457 AQEVVDEGLAKPILIGRPSVIEARIKKLGLR 487 (753)
T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 9999976986258856999999999976999
No 205
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=56.03 E-value=16 Score=17.02 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCCC----CCCCCCCCCCCC
Q ss_conf 9999999998618998799997588888889999999999984147867996-033233223----210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASAG----YLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~~----Y~iAs~ad~I~a 123 (293)
-++++.|.++.+ +..||++. |||-...+-.|+++|..+ +.|++=. +.+..+-.. -+++..|+-+++
T Consensus 55 gelId~I~~a~~--~~~giIiN---pga~THtSiAl~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~ 125 (148)
T PRK13015 55 GQLIDWIHAARG--DVAGIVIN---PAAYTHTSVAIRDALAAL--ELPVIEVHISNVHAREAFRHHSYVSAIADGVIC 125 (148)
T ss_pred HHHHHHHHHHHC--CCCEEEEC---CCCCEEEHHHHHHHHHHC--CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 999999999860--28089973---731133106589999874--998899961782433664443655752649997
No 206
>PRK07582 cystathionine gamma-lyase; Validated
Probab=55.98 E-value=8.6 Score=18.62 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9987999975-8888888999999999998414786799603323322
Q gi|254780747|r 64 DSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 64 ~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
++.|.|+++- .+|...+.-.+.|.+.-+ + ..+.+.+++..++.
T Consensus 134 ~~tklv~~EspsNP~l~v~Di~~ia~~A~---~-~gi~~vVDNT~atP 177 (370)
T PRK07582 134 GAADLVLAETPSNPGLDVVDLARLARACH---A-AGALLVVDNTTATP 177 (370)
T ss_pred CCCCEEEEECCCCCCCEEECCHHHHHHHH---H-CCCEEEEECCCCCH
T ss_conf 57738999779998865335388899998---7-69969998898406
No 207
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.38 E-value=16 Score=16.95 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCC----CCCCCCCCCCCCC
Q ss_conf 9999999998618998799997588888889999999999984147867996-03323322----3210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITE-VHEMAASA----GYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~-~~~~~~S~----~Y~iAs~ad~I~a 123 (293)
-++++.|.++.++ ..||++. ||+-...+-.|++++..+ +.|++=. +.+..+-- .-+++-.|+-+++
T Consensus 55 gelI~~Iq~a~~~--~dgiIiN---pga~THtS~al~DAl~~~--~~P~iEVHlSNi~~RE~fR~~S~is~~~~g~I~ 125 (143)
T PRK05395 55 GELIDRIHEARDD--VDGIIIN---PGAYTHTSVALRDALAAV--SIPVVEVHLSNIHAREEFRHHSYISDVAVGVIC 125 (143)
T ss_pred HHHHHHHHHHHHC--CCEEEEC---CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHCCCHHHCCCCCHHCEEEEE
T ss_conf 9999999998633--7579973---621332448899899874--998899964891330530010543401338995
No 208
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=55.01 E-value=16 Score=16.92 Aligned_cols=25 Identities=4% Similarity=0.187 Sum_probs=9.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9997588888889999999999984
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKV 93 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~ 93 (293)
++|+=-+-|-++....++.+.|+++
T Consensus 177 LlLDEPts~LD~~~~~~i~~~l~~l 201 (273)
T PRK13547 177 LLLDEPTAALDLAHQHRLLDTVRRL 201 (273)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9972874448999999999999999
No 209
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=54.78 E-value=16 Score=16.89 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999999861899879999758888888999999999998414786799603
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~ 104 (293)
++-+.-.+....++.+ ++++=-+.|-++...+++.+.|+++++.+..+..+.
T Consensus 150 ~QRvaiAral~~~p~v--lllDEPT~~LD~~~~~~v~~ll~~l~~~G~tii~vt 201 (648)
T PRK10535 150 QQRVSIARALMNGGQV--ILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT 201 (648)
T ss_pred HHHHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999728989--995688555799999999999999997799999976
No 210
>PRK08114 cystathionine beta-lyase; Provisional
Probab=53.49 E-value=17 Score=16.76 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCCCCC
Q ss_conf 9999986189987999975-888888899999999999841478679960332332232--1000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGY--LISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y--~iAs~ad~I~ 122 (293)
+.++++.+ ++.|.|++.- .+|...+.....|.+.-++. +.++++.+++..++.-+ -+...||-++
T Consensus 138 ~~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~a~~~--~~~~~~vvDNTfatP~~~~Pl~~GaDivi 205 (395)
T PRK08114 138 ADIAKLIQ-PNTKVVFLESPGSITMEVHDIPAIVAAVRSV--APDAVIMIDNTWAAGVLFKALDFGIDISI 205 (395)
T ss_pred HHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 99997468-7754999944898665226799999999860--56868997188788765544466674999
No 211
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=52.87 E-value=17 Score=16.70 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCEEEEEEEEEEECC-----------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 872899997666238-----------------------699999999986189987999975888888899999999999
Q gi|254780747|r 35 SPHVARIAIRGQIED-----------------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~-----------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~ 91 (293)
..+++.+...|.+.- ..+..+.+..+.+|+..+.+.|+++++. -.+.-.++++
T Consensus 154 ~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~----~~r~fl~~a~ 229 (598)
T COG1042 154 GGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVK----DGRKFLNAAR 229 (598)
T ss_pred CCCEEEEEECHHHHHHCCCHHHHCCCCEEEEEEECCHHHCCCHHHHHHHHHCCCCEEEEEEECCCH----HHHHHHHHHH
T ss_conf 887379995257887616523426875369996142543384466777752765307999842544----2799988999
Q ss_pred HHCCCCCEEEEECCCCCCCC
Q ss_conf 84147867996033233223
Q gi|254780747|r 92 KVKNRKPVITEVHEMAASAG 111 (293)
Q Consensus 92 ~~k~~kpvva~~~~~~~S~~ 111 (293)
.+..+||+++.-.+....++
T Consensus 230 ~~~~~kpii~lk~gr~~~~a 249 (598)
T COG1042 230 AAERKKPIIALKAGRSEAGA 249 (598)
T ss_pred HHHCCCCEEEEECCCCHHHH
T ss_conf 87357877999634787888
No 212
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.83 E-value=17 Score=16.70 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=4.0
Q ss_pred CCCCCCCCHHHH
Q ss_conf 980623898999
Q gi|254780747|r 222 GLIDVVGGQEEV 233 (293)
Q Consensus 222 GLvD~ig~~~~a 233 (293)
|=|=+.|+.++.
T Consensus 213 G~Iv~~G~~~eL 224 (229)
T cd03254 213 GKIIEEGTHDEL 224 (229)
T ss_pred CEEEEECCHHHH
T ss_conf 999998887999
No 213
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.79 E-value=17 Score=16.69 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..+..+..++..+
T Consensus 163 EPtagLDp~~~~~i~~~l~~l 183 (277)
T PRK13652 163 EPTAGLDPQGVKELFDFLNAL 183 (277)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 974548999999999999999
No 214
>PRK07050 cystathionine beta-lyase; Provisional
Probab=52.58 E-value=11 Score=17.97 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.++++- +++.|.|+++- .+|...+.-...|.+.-+ ++.+...+++..++.
T Consensus 142 ~~~~~i-~~~Tkli~~Esp~NP~l~v~Di~~ia~~A~----~~g~~~vVDNT~atP 192 (394)
T PRK07050 142 GIADLI-QPNTRLIWLEAPGSVTMEVPDVPAITAAAR----ARGVVTAIDNTWSAG 192 (394)
T ss_pred HHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHH----HCCCEEEEECCCCCC
T ss_conf 998436-866449998448987625437299999998----759869985786686
No 215
>PRK06767 methionine gamma-lyase; Provisional
Probab=52.42 E-value=11 Score=17.92 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.++++.+ ++.|.|+++- .+|-..+.-.+.|.+.- +++.+.+.+++..++.
T Consensus 138 ~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~A----~~~g~~~vvDNT~atP 188 (386)
T PRK06767 138 DIENKIR-PNTKLIFVETPINPTMKLIDLKQVIRVA----KRNGLLVIVDNTFCSP 188 (386)
T ss_pred HHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHH----HHCCCEEEEECCCCCC
T ss_conf 9997568-8825999977999876712799999986----0067349974576422
No 216
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.05 E-value=18 Score=16.62 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=67.4
Q ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCCEEEE----ECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 9976662386999999999861899879999----75888888--89999999999984147867996033233223210
Q gi|254780747|r 41 IAIRGQIEDSQELIERIERISRDDSATALIV----SLSSPGGS--AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 (293)
Q Consensus 41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL----~i~SpGG~--~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i 114 (293)
.+++--.++.+.+.+.+.++.++-.+ +|+= -.|+-+.. ...+..+++.+ +-||+-.++....|.. ..
T Consensus 56 rNLD~~mm~~~~v~~~f~~~~~~adi-~vIEGVMGLfDG~~~~~~~gSTA~lAk~l-----~~PVvLVid~~~~s~S-~A 128 (451)
T COG1797 56 RNLDSWMMGEEGVRALFARAAADADI-AVIEGVMGLFDGRGSATDTGSTADLAKLL-----GAPVVLVVDASGLSRS-VA 128 (451)
T ss_pred CCCCHHHCCHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCCCCCCHHHHHHHH-----CCCEEEEEECCCHHHH-HH
T ss_conf 77765446998999999986278987-99961230236887776777799999985-----9998999957522578-99
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCH-------HHHHHHH-HHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf 00111000130135345556530210-------2456777-4204225531552112346667---89999887777766
Q gi|254780747|r 115 SCASNIIVAAETSLVGSIGVLFQYPY-------VKPFLDK-LGVSIKSVKSSPMKAEPSPFSE---VNPKAVQMMQDVVD 183 (293)
Q Consensus 115 As~ad~I~a~p~s~vGsiGv~~~~~~-------~~~ll~k-~gi~~~~~~~g~~K~~~~p~~~---~s~e~~~~~~~~l~ 183 (293)
|..--.---.|. +..-||+.+... .++.+++ .||.+--+-- ..++.-=|.+. ....++.. ++
T Consensus 129 Aiv~G~~~fdp~--v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lp-r~~~l~lp~RHLGLV~a~E~~~----~~ 201 (451)
T COG1797 129 AIVKGFKHFDPD--VNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLP-RDDDLELPSRHLGLVPASERLE----LE 201 (451)
T ss_pred HHHHHHHHCCCC--CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCCCCCCCCCCCCHHHHH----HH
T ss_conf 999889861998--8257899724777889999998755327985798742-7855678541326534303444----89
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 66677899998514999889988734
Q gi|254780747|r 184 SSYHWFVRLVSESRNIPYDKTLVLSD 209 (293)
Q Consensus 184 ~~~~~f~~~Va~~R~~~~~~~~~~~~ 209 (293)
..++.+.+.|++ .++.+++.+++.
T Consensus 202 ~~~~~~a~~v~~--~vDld~l~~ia~ 225 (451)
T COG1797 202 AKLEALAEVVEK--HVDLDALLEIAS 225 (451)
T ss_pred HHHHHHHHHHHH--HCCHHHHHHHHH
T ss_conf 999999999986--078988999874
No 217
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.04 E-value=18 Score=16.62 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHCCCCC-CEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEE-CCCC---CCCCCCCCCCC--CCC
Q ss_conf 69999999998618998-799997588888889-9999999999841478679960-3323---32232100011--100
Q gi|254780747|r 50 SQELIERIERISRDDSA-TALIVSLSSPGGSAY-AGEAIFRAIQKVKNRKPVITEV-HEMA---ASAGYLISCAS--NII 121 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~i-k~ivL~i~SpGG~~~-~~~~i~~ai~~~k~~kpvva~~-~~~~---~S~~Y~iAs~a--d~I 121 (293)
.+.|.++|+.|.+--.- ++|++.-..+-|-.- -.+.+.+...+ +-+.||+..- +++. -|.||-+|..+ +++
T Consensus 83 ekKL~~aI~ea~~~~~P~kaIfV~sTC~~glIGDDI~aV~~~~~~-~~gipVIpv~~~GF~g~s~~~G~~~a~~al~~~v 161 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASK-ELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHI 161 (421)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999857973089999237378655689999999877-5299889986898577523068899999999984
Q ss_pred CC-------CHH--HHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC
Q ss_conf 01-------301--353455565302102456777420422553155
Q gi|254780747|r 122 VA-------AET--SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 (293)
Q Consensus 122 ~a-------~p~--s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~ 159 (293)
.- .|. .++|-..+....+-.+.+|+++||++...-+|+
T Consensus 162 v~~~~~~~~~~~~iNiige~ni~gd~~~i~~lL~~mGi~V~~~~tgd 208 (421)
T cd01976 162 LGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGD 208 (421)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 16688778898417997556676329999999998398379998089
No 218
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.77 E-value=18 Score=16.59 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.+.++++- +++.+.|++.- .+|-..+.-...|.+.-+ +. .+.+.+++..++.
T Consensus 145 ~~~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~---~~-g~~~vVDNTfatP 197 (436)
T PRK07812 145 LDSWRAAV-RPNTKAFFAETISNPQIDILDIPGVAEVAH---EA-GVPLIVDNTIATP 197 (436)
T ss_pred HHHHHHHC-CCCCEEEEEECCCCCCEECCCHHHHHHHHH---HC-CCEEEEECCCCCC
T ss_conf 99999745-867439999648998605236699999999---85-9929962686462
No 219
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=51.59 E-value=18 Score=16.57 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=6.8
Q ss_pred HCCCCCCCCCHHHHHH
Q ss_conf 7798062389899999
Q gi|254780747|r 220 KVGLIDVVGGQEEVWQ 235 (293)
Q Consensus 220 ~~GLvD~ig~~~~a~~ 235 (293)
+.|=|=+.|+.++.++
T Consensus 232 ~~G~Ive~Gth~ELm~ 247 (282)
T cd03291 232 HEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCEEEEECCHHHHHH
T ss_conf 8988999748899863
No 220
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.32 E-value=12 Score=17.71 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.+.++++. +++.+.|++.- .+|...+.-...|.+.-+ + ..+...+++..++.
T Consensus 145 ~~~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP 197 (437)
T PRK05613 145 PESWQAAV-QPNTKAFFGETFANPQADVLDIPAVAEVAH---R-NQVPLIIDNTIATA 197 (437)
T ss_pred HHHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH---H-CCCEEEECCCCCCH
T ss_conf 99999737-878559999879998653357999999998---7-69839951665203
No 221
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.71 E-value=9.5 Score=18.35 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=16.1
Q ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9987999975-8888888999999999998414786799603323322
Q gi|254780747|r 64 DSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 64 ~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
++.+.|++.- .+|-..+.-...|.+.-+ + ..+.+.+++..++.
T Consensus 148 ~~Tkli~~EsPsNP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP 191 (431)
T PRK08248 148 DKTKALFAETIGNPKGDVLDIEAVADIAH---R-HHIPLIVDNTFASP 191 (431)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHH---H-CCCEEEEECCCCCH
T ss_conf 77459996048999874227899999997---7-69859986675303
No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=50.63 E-value=19 Score=16.48 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf 69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL 128 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~ 128 (293)
.++.+.-....+.++++ ++|+=-+-+-++...+++.+.++++++.+..+.++.+.- .++...||+++. ..+.+
T Consensus 150 ~kQrv~ia~al~~~p~l--lilDEPTa~Ld~~~~~~l~~~l~~l~~~g~tii~isH~l----~~v~~~~Drv~vl~~G~i 223 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKV--IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL----AEIRRICDRYTVMKDGSS 223 (510)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH----HHHHHHCCEEEECCCCCE
T ss_conf 99999999999859884--998788566686789999999888887287179995236----778864886997149819
Q ss_pred H
Q ss_conf 3
Q gi|254780747|r 129 V 129 (293)
Q Consensus 129 v 129 (293)
+
T Consensus 224 v 224 (510)
T PRK09700 224 V 224 (510)
T ss_pred E
T ss_conf 9
No 223
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=50.59 E-value=11 Score=18.06 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~ 122 (293)
+.++++. +++.+.|+++- .+|...+.-...|++.-+ .+.+...+++..++.-+. +...+|-++
T Consensus 116 ~~~~~~i-~~~t~li~~EspsNP~l~v~Di~~i~~~A~----~~g~~~vvDNT~atp~~~~Pl~~GaDivv 181 (369)
T cd00614 116 EALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELAH----EHGALLVVDNTFATPYLQRPLELGADIVV 181 (369)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEECCCHHHHHHHH----HCCEEEEEECCCCCHHCCCHHHHCCCEEE
T ss_conf 8899763-878508999658999706227299999997----66717997477431201585774896899
No 224
>PRK12862 malic enzyme; Reviewed
Probab=50.57 E-value=19 Score=16.47 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCEEEEEEEEEEECCHH-HHH-------------HHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 87289999766623869-999-------------9999986189987999975888888899999999999841478679
Q gi|254780747|r 35 SPHVARIAIRGQIEDSQ-ELI-------------ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVI 100 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~~-~l~-------------~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvv 100 (293)
..+|.+.+-+|.|...+ +.. +.|..|.++- -|+|-+..| |.+. .+.++.. +++|++
T Consensus 218 ~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gA---Dvfig~S~~-~~~~-----~e~v~~M-a~~piv 287 (761)
T PRK12862 218 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGA---DVFLGLSAA-GVLK-----PEMVKKM-APRPLI 287 (761)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCC---CEEEECCCC-CCCC-----HHHHHHH-CCCCEE
T ss_conf 10179994678777887743079999996507966599996689---889980689-9999-----9999852-737778
Q ss_pred EEECCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 96033233223210001--1100013
Q gi|254780747|r 101 TEVHEMAASAGYLISCA--SNIIVAA 124 (293)
Q Consensus 101 a~~~~~~~S~~Y~iAs~--ad~I~a~ 124 (293)
-.+-+------|..|-. .|.|++.
T Consensus 288 falANP~PEI~p~~a~~~r~~~i~aT 313 (761)
T PRK12862 288 LALANPTPEILPEEARAVRPDAIIAT 313 (761)
T ss_pred EECCCCCCCCCHHHHHHHCCCEEEEC
T ss_conf 62589898759999987446279834
No 225
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.21 E-value=14 Score=17.28 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+.++++- +++.+.|++.- .+|...+.-...|.+.-++ .+ +.+.+++..++.
T Consensus 139 ~~~~~~i-~~~T~lv~~EspsNP~l~v~Di~~ia~iA~~--~g--~~~vVDNT~atP 190 (426)
T PRK05994 139 ASFEAAI-TPRTKAIFIESIANPGGTITDIEAIAEVAHR--AG--LPLIVDNTLASP 190 (426)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHH--CC--CEEEEECCCCHH
T ss_conf 8899736-8875499998789988723478999999997--19--917863565204
No 226
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=50.20 E-value=9.8 Score=18.26 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCEEE
Q ss_conf 245677742042255
Q gi|254780747|r 141 VKPFLDKLGVSIKSV 155 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~ 155 (293)
++.++.++||++..+
T Consensus 121 ~~~~l~~~Gi~~~~v 135 (397)
T PRK07504 121 VETLLPRYGIESTLV 135 (397)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 999986078589987
No 227
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=50.15 E-value=19 Score=16.43 Aligned_cols=72 Identities=7% Similarity=0.152 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 699999999986189987999975888888899999999999841478-6799603323322321000111000130135
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+++.+.--+..+.++.+ ++|+=-+-|-++....++.+.|+++++.+ -|+...+++. ..+..||+|++=..+-
T Consensus 143 qrQRV~IARALaq~P~I--LLLDEPTs~LDi~~q~ell~lLr~L~~~G~TVI~vtHDL~-----lA~~~cDrVivl~~Gr 215 (409)
T PRK09536 143 ERQRVLLARALAQATPV--LLLDEPTASLDINHQIRTLELVRDLADDGKTVVAAIHDLN-----LAARYCDELVLLADGR 215 (409)
T ss_pred HHHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHCCEEEEEECCE
T ss_conf 99999999999679998--9995876679999999999999999858999999956899-----9998699999998998
No 228
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=50.07 E-value=19 Score=16.42 Aligned_cols=148 Identities=12% Similarity=0.207 Sum_probs=73.1
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf 7666238699999999986189987999975888888899999999999841478679960332332-232100011100
Q gi|254780747|r 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASNII 121 (293)
Q Consensus 43 i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad~I 121 (293)
+-|.-.+.++.++.++.. ...-++++++-||++.. ++...|++.....|++++....... ..-.+.+.|+-.
T Consensus 31 vv~~a~~~~~~~~~l~~~----~~DvvllD~~lp~~~g~---~~i~~i~~~~p~~~ilvls~~~~~~~~~~a~~~Ga~g~ 103 (210)
T PRK09935 31 VVLKTDDSRITIDYLRTY----PVDLVILDIELPGTDGF---TLLKRIKQIQETVKVLFLSSKSECFYAGRAIRAGANGF 103 (210)
T ss_pred EEEEECCHHHHHHHHHHC----CCCEEEECCCCCCCCCC---CHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 999989999999999747----99999988999998864---05678987389970899717672999999996687768
Q ss_pred CC---CHHHHHHHHHHHHCC-CHH-HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 01---301353455565302-102-4567774204225531552112346667899998877777666667789999851
Q gi|254780747|r 122 VA---AETSLVGSIGVLFQY-PYV-KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293)
Q Consensus 122 ~a---~p~s~vGsiGv~~~~-~~~-~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293)
+. ++..+...+-.+..+ .++ ...++.+. ........+...++|+.+++.++-+.++.- ...||+.
T Consensus 104 l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~Lt~RE~eVL~ll~~G~s---nkeIA~~ 173 (210)
T PRK09935 104 VSKRKDLNDIYNAVQMILSGYSFFPSETLNFIK-------SNKCSKGSSTDMPLSNREVTVLRYLANGLS---NKEIAEQ 173 (210)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-------HCCCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHH
T ss_conf 867899999999999998599536989999987-------343666655678999899999999986999---9999989
Q ss_pred CCCCHHHHHHH
Q ss_conf 49998899887
Q gi|254780747|r 197 RNIPYDKTLVL 207 (293)
Q Consensus 197 R~~~~~~~~~~ 207 (293)
-+++...++..
T Consensus 174 L~iS~~TV~~h 184 (210)
T PRK09935 174 LLLSNKTISAH 184 (210)
T ss_pred HCCCHHHHHHH
T ss_conf 49889999999
No 229
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=49.69 E-value=20 Score=16.39 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf 869999999998618998799997588888889999999999984147867996033233223210001110001-3013
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETS 127 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s 127 (293)
+.++.+.-......++++ ++|+=-+-+-++...+++.+.|+++++++..+.++.+.- ..+...||+++. ..+-
T Consensus 144 G~kQrv~ia~aL~~~p~l--liLDEPts~LD~~~~~~l~~~l~~l~~~G~til~isH~l----~~~~~~~Drv~vl~~G~ 217 (501)
T PRK11288 144 GQRQMVEIAKALMRNARV--IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM----EEIFALCDAITVFRDGR 217 (501)
T ss_pred HHHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCH----HHHHHHCCEEEEEECCE
T ss_conf 999999999998609989--996587456898999999889999987276126513328----99997588789711885
Q ss_pred HHH
Q ss_conf 534
Q gi|254780747|r 128 LVG 130 (293)
Q Consensus 128 ~vG 130 (293)
++.
T Consensus 218 iv~ 220 (501)
T PRK11288 218 YVA 220 (501)
T ss_pred EEE
T ss_conf 997
No 230
>PRK07671 cystathionine beta-lyase; Provisional
Probab=49.59 E-value=13 Score=17.51 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=32.9
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321---000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I~ 122 (293)
+.++++- +++.|.|++.- .+|...+.-...|.+.-++ ..+...+++..++. |+ +...||-++
T Consensus 125 ~~~~~ai-~~~Tklv~~EspsNP~l~v~Di~~ia~iA~~----~g~~~vVDNT~atP-~~~~Pl~~GaDivv 190 (377)
T PRK07671 125 EEVEEAI-RPNTKAIYVETPTNPLLKITDIKKISTLAKE----KGLLTIVDNTFMTP-YWQSPISLGADIVL 190 (377)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHHH----CCCEEEECCCCCCC-CCCCHHHHCCCEEE
T ss_conf 8899647-8884499997899988750167999999998----29969851764220-22787772887899
No 231
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=49.51 E-value=20 Score=16.37 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=6.8
Q ss_pred HHHHHHHHHHCC
Q ss_conf 245677742042
Q gi|254780747|r 141 VKPFLDKLGVSI 152 (293)
Q Consensus 141 ~~~ll~k~gi~~ 152 (293)
..++++++|+..
T Consensus 123 ~~~~l~~vgL~~ 134 (248)
T PRK11264 123 ARELLAKVGLAG 134 (248)
T ss_pred HHHHHHHCCCCC
T ss_conf 999999859951
No 232
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.15 E-value=20 Score=16.33 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |++..+....+.+++++.++|+.-.|-+.
T Consensus 43 ~pdgiiL---S~GPg~P~~~~~~~~~i~~~~~~iPiLGIClG~ 82 (192)
T PRK05670 43 APDAIVL---SPGPGTPAEAGISLELIREFAGKVPILGVCLGH 82 (192)
T ss_pred CCCEEEE---CCCCCCHHHCCCHHHHHHHHCCCCCEEEEEHHH
T ss_conf 9898999---999999366055499999734699789984778
No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=48.86 E-value=20 Score=16.31 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=10.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..+++.+
T Consensus 156 EPt~gLD~~~~~~l~~~i~~l 176 (245)
T PRK03695 156 EPMNSLDVAQQSALDRLLSEL 176 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 876678999999999999999
No 234
>PRK08064 cystathionine beta-lyase; Provisional
Probab=48.61 E-value=8.9 Score=18.54 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=27.1
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.++++- +++.+.|+++- .+|-..+.-.+.|.+.-+ ++.+...+++..++.
T Consensus 130 ~~~~~i-~~~Tklv~~EspsNP~l~v~Di~~i~~iA~----~~g~~~vVDNT~atP 180 (390)
T PRK08064 130 EVAQNI-KPNTKLFYVETPSNPLLKVTDIRGVVKLAK----AHGCLTFVDNTFLTP 180 (390)
T ss_pred HHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHH----HCCCEEEEECCCCCC
T ss_conf 799747-888459999789998874127199999998----839969973773350
No 235
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=48.57 E-value=14 Score=17.35 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.+.++++- +++.+.|+++- .+|-..+.-...|.+.-+ ...+...+++..++.
T Consensus 127 ~~~~~~~i-~~~T~li~~EspsNP~l~v~Di~~ia~iA~----~~gi~~vVDNT~atP 179 (381)
T pfam01053 127 LDALEAAI-KPNTKAVFLETPTNPLLKVVDIEAIAKIAK----KHGALVVVDNTFASP 179 (381)
T ss_pred HHHHHHHC-CCCCEEEEEECCCCCCEEECCCHHHHHHHH----HCCCEEEEECCCCHH
T ss_conf 67899755-888429999748998605126099999986----457359987886005
No 236
>PRK07503 methionine gamma-lyase; Provisional
Probab=48.15 E-value=11 Score=17.92 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=20.2
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.++++-+ ++.|.|+++- .+|...+.-...|.+.-+ + +.+...+++..++.
T Consensus 142 ~~~~ai~-~~Tkli~~Etp~NP~l~v~Di~~ia~iA~---~-~g~~~vVDNTfatP 192 (403)
T PRK07503 142 ALKAAIS-EKTRMIYFETPANPNMQLVDIAAVVEAAR---G-HDALVVVDNTYCTP 192 (403)
T ss_pred HHHHHCC-CCCEEEEEECCCCCCCEEECHHHHHHHHH---H-CCCEEEEECCCCCC
T ss_conf 9997518-67329999527999866305799999998---6-58859983675451
No 237
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=48.08 E-value=21 Score=16.23 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCC
Q ss_conf 869999999998618998799997588888889999999999984-1478679960332
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHEM 106 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~-k~~kpvva~~~~~ 106 (293)
+.+.+++-|++|+.||+|-+|=..+--.|+..- |.+|+-+. .++|.|++.++=.
T Consensus 353 SF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSp----IV~ALi~AA~nGKqVtvlVELk 407 (696)
T COG0855 353 SFEPVVEFLRQAAADPDVLAIKQTLYRTSKDSP----IVRALIDAAENGKQVTVLVELK 407 (696)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCH----HHHHHHHHHHCCCEEEEEEEEH
T ss_conf 128999999986149985898877875289987----9999999998098689999972
No 238
>TIGR02886 spore_II_AA anti-sigma F factor antagonist; InterPro: IPR014237 This represents the anti-sigma F factor antagonist, also known as stage II sporulation protein AA. This protein is universally conserved in the endospore-forming bacteria, all of which belong to the Firmcutes.; GO: 0045152 antisigma factor binding, 0006355 regulation of transcription DNA-dependent, 0030435 sporulation.
Probab=48.06 E-value=21 Score=16.23 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=38.9
Q ss_pred CCEEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEEC------CCCCCCH
Q ss_conf 87289999766623--8699999999986189987999975------8888888
Q gi|254780747|r 35 SPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSL------SSPGGSA 80 (293)
Q Consensus 35 ~~~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i------~SpGG~~ 80 (293)
.+.+++|.|.|.+- +.+.+.+.++.+-+...|+-++|++ ||-|-++
T Consensus 6 ~~~~L~Vrl~GELDHH~aE~~R~~i~~~i~~~~~~~~ilnL~~vtFMDSSGlGV 59 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHTAEEVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGV 59 (106)
T ss_pred ECCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCE
T ss_conf 188899998610044678999999998985079836898627764786512210
No 239
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=47.99 E-value=15 Score=17.07 Aligned_cols=63 Identities=5% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~ 122 (293)
+.++++- .++.|.|++.- .+|...+.-...|.+.-+ + ..+.+.+++..++.-+. +...+|=++
T Consensus 129 ~~~~~~i-~~~Tkli~~EspsNP~l~v~Di~~i~~~A~---~-~g~~~vvDNT~atP~~~~Pl~~GaDivv 194 (388)
T PRK08861 129 AALDAAL-AKKPKLILLETPSNPLVRVVDIAEVCQKAK---Q-VGALVAVDNTFLTPVLQKPLELGADFVI 194 (388)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHH---H-CCCEEEEECCCCHHHHCCCHHCCCCEEE
T ss_conf 7899734-878539998448999836656599999998---7-3995999788512530372103887899
No 240
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.48 E-value=21 Score=16.17 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=9.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4666789999887777766666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSY 186 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~ 186 (293)
||+..+.+..+..+..++..+.
T Consensus 166 EPTs~LD~~~~~~i~~ll~~L~ 187 (277)
T PRK13642 166 ESTSMLDPTGRSEIMRVIHEIK 187 (277)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8876589899999999999999
No 241
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=46.84 E-value=22 Score=16.11 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 987999975-8888888999999999998414786799603323322321000111000130135345556
Q gi|254780747|r 65 SATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134 (293)
Q Consensus 65 ~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv 134 (293)
.|..|++=- ...|+...-.....-....+..+-|.++ ++..|+||.--+..+++.|-+-...++--.|+
T Consensus 53 ~Id~vi~G~~~~~g~~~~~~aR~~~l~aGlp~~vpa~t-Vn~~CaSG~~Ai~~A~~~I~sG~~dvvlAgGv 122 (394)
T PRK06445 53 EIGDVITGCALQVGENWLYGGRHVVLLAKLPYTIPAMH-VDRQCASSLTTVAIGAMEIATGMADIVIAGGV 122 (394)
T ss_pred HCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCEEEEECE
T ss_conf 96979996475556566748899999769998887488-85541689999999999997399999999474
No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=46.84 E-value=22 Score=16.11 Aligned_cols=39 Identities=3% Similarity=0.092 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998618998799997588888889999999999984
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~ 93 (293)
.+.-.+....+|.+ ++|+=-+-|-++....++.+.|+++
T Consensus 105 rv~iA~aL~~~P~i--lilDEPts~LD~~~~~~i~~~i~~l 143 (180)
T cd03214 105 RVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred HHHHHHHHHHCCCE--EEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999868964--7885875447999999999999999
No 243
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=46.47 E-value=22 Score=16.07 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC-------CCCCC
Q ss_conf 78679960332332232100011100013013534555653021024567774204225531552112-------34666
Q gi|254780747|r 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE-------PSPFS 168 (293)
Q Consensus 96 ~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~-------~~p~~ 168 (293)
..|+++.+-|+-|+|=.+||-. +...|..+|++..+|..|+|.-. .+-|.
T Consensus 11 ~~klvIvmVGLPARGKS~ia~k-----------------------l~RYL~W~g~~~kvFn~G~yRR~~~~~~~~~~ffd 67 (223)
T pfam01591 11 NSKTMIVMVGLPARGKTYISKK-----------------------LTRYLNWLGVPTKVFNVGEYRRSAVKAYSNYEFFR 67 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHH-----------------------HHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCC
T ss_conf 8988999989999988999999-----------------------99998656998058426378876318999941138
Q ss_pred CCCHHHHHHHHHH----HHHHHHHHH
Q ss_conf 7899998877777----666667789
Q gi|254780747|r 169 EVNPKAVQMMQDV----VDSSYHWFV 190 (293)
Q Consensus 169 ~~s~e~~~~~~~~----l~~~~~~f~ 190 (293)
|-+++..+..+.+ ++++.++|.
T Consensus 68 p~n~~~~~~R~~~a~~~l~dl~~~l~ 93 (223)
T pfam01591 68 PDNTEAMKIREQCALAALKDVLAYLN 93 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989999999999999999999998
No 244
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=46.42 E-value=22 Score=16.07 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=5.4
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 46667899998877
Q gi|254780747|r 165 SPFSEVNPKAVQMM 178 (293)
Q Consensus 165 ~p~~~~s~e~~~~~ 178 (293)
||+..+.+..++.+
T Consensus 130 EPT~gLD~~~~~~i 143 (182)
T cd03215 130 EPTRGVDVGAKAEI 143 (182)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 87545899999999
No 245
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=46.37 E-value=22 Score=16.06 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=42.8
Q ss_pred CEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHC
Q ss_conf 728999976662386--999999999861899879999758888-88899999999999841
Q gi|254780747|r 36 PHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 36 ~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k 94 (293)
+.++++.+-|.+.+. +++.+.+-......+++.+++++.+.. -+...++.+.+..+-+|
T Consensus 9 ~~vlvlPliG~ld~~r~~~l~e~ll~~i~~~~~~~viiDlsGv~~iD~~~~~~L~~l~~~~~ 70 (109)
T cd07041 9 DGVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALR 70 (109)
T ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98899986898859999999999999999729889999745886377899999999999999
No 246
>PRK10403 transcriptional regulator NarP; Provisional
Probab=45.88 E-value=22 Score=16.02 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf 7666238699999999986189987999975888888899999999999841478679960332332-232100011100
Q gi|254780747|r 43 IRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS-AGYLISCASNII 121 (293)
Q Consensus 43 i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S-~~Y~iAs~ad~I 121 (293)
+-|.-.+.++.++.+++ ....-++++++-||++. -++...|++....-|++++....... ..-.+...|+-.
T Consensus 34 vv~~a~~~~~~~~~~~~----~~pDlvllD~~lp~~~G---~~~~~~l~~~~p~~~iivlt~~~~~~~~~~al~~Ga~gy 106 (215)
T PRK10403 34 VVAEAGDGASAIDLANR----LDIDVILLDLNMKGMSG---LDTLNALRRDGVTAQIIILTVSDASSDIFALIDAGADGY 106 (215)
T ss_pred EEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCC---CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 99998999999999864----49989998089989987---412335654188773688632432367899874687668
Q ss_pred CCCH---HHHHHHHHHHH-CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0130---13534555653-0210245677742042255315521123466678999988777776666677899998514
Q gi|254780747|r 122 VAAE---TSLVGSIGVLF-QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 (293)
Q Consensus 122 ~a~p---~s~vGsiGv~~-~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R 197 (293)
+.-+ ..++-.+--+. ...++..-..+.-. .........+|+..+|+.+++.++-+.++.- ...||+..
T Consensus 107 l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~l~-----~~~~~~~~~~~~~~LT~RE~eVL~lla~G~s---nkeIA~~L 178 (215)
T PRK10403 107 LLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLR-----EREMFGAEEDPFSVLTERELDVLHELAQGLS---NKQIASVL 178 (215)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHHH
T ss_conf 848999999999999998499847989999998-----7421246677445689999999999986999---99999997
Q ss_pred CCCHHHHHHH
Q ss_conf 9998899887
Q gi|254780747|r 198 NIPYDKTLVL 207 (293)
Q Consensus 198 ~~~~~~~~~~ 207 (293)
+++...++..
T Consensus 179 ~iS~~TV~~h 188 (215)
T PRK10403 179 NISEQTVKVH 188 (215)
T ss_pred CCCHHHHHHH
T ss_conf 9829999999
No 247
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.86 E-value=22 Score=16.01 Aligned_cols=22 Identities=14% Similarity=0.062 Sum_probs=10.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3466678999988777776666
Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
-||+..+.+..+..+..++..+
T Consensus 164 DEPTs~LD~~~~~~v~~li~~L 185 (255)
T cd03236 164 DEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
T ss_conf 7987658999999999999999
No 248
>pfam06263 consensus
Probab=45.84 E-value=22 Score=16.01 Aligned_cols=50 Identities=16% Similarity=0.405 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998618998799997588888889999999999984147867996033
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
..+..|+...+|+..+-|+|- .-|-. ..-.+.+.+.++. .+|||++.+-+
T Consensus 237 sml~al~aL~~Dp~T~vIvlI-SKPPa-~eV~~kVl~~~~~--~~KPVV~~FLG 286 (514)
T pfam06263 237 MMLDALDALEQDEETKVIVLI-SKPPA-PEVAEKILELLKA--SGKPVVVLFLG 286 (514)
T ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCCC-HHHHHHHHHHHHH--CCCCEEEEEEC
T ss_conf 899999998559983299996-58997-8999999999984--29988999847
No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.75 E-value=22 Score=16.00 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=8.8
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 46667899998877777666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDS 184 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~ 184 (293)
||+..+.+..+..+.+++..
T Consensus 134 EPt~gLD~~~~~~i~~~l~~ 153 (192)
T cd03232 134 EPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 88768898999999999999
No 250
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , . Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=45.28 E-value=23 Score=15.96 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCC-----CCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999999999861899-----879999758888--8889999999999984147867996033233223210001110
Q gi|254780747|r 51 QELIERIERISRDDS-----ATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~-----ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~ 120 (293)
+.+...|++|.++.+ |+.|-+ -..|| |+....-.+++.|. +.=+||++- ++.. -|.-|+..-.+.
T Consensus 55 ~~~~~L~~~Al~~~~~~~~~I~~IA~-t~~PGL~g~L~vGat~Ar~La-~~l~kPlig-v~H~--~GH~~~~~l~~~ 126 (337)
T TIGR00329 55 ENIPPLLERALKESNVDISEIDLIAV-TSGPGLGGALIVGATFARSLA-LSLDKPLIG-VNHL--LGHIYAPLLDTN 126 (337)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHH-HHHCCCCCC-HHHH--HHHHHHHHHCCC
T ss_conf 98899999999982887010257898-558798514689999999998-987289551-4578--999988741477
No 251
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=44.81 E-value=23 Score=15.91 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999998618998799997588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+...++++.-|++|..|++=-..+.+. +...+.+... ++++ -|-++ ++..|+||---+..+++.|-+....+
T Consensus 29 i~~~l~r~~i~~~id~vi~G~~~~~~~--~g~n~aR~aa-l~aGlp~~vp~~T-Vnr~C~SGl~Ai~~aa~~I~~G~~dv 104 (384)
T PRK07661 29 VKETLKRANYEGPIDDLIIGCAMPEAE--QGLNMARNIG-ALAGLPYTVPAIT-INRYCSSGLQSIAYGAERIMLGHSEA 104 (384)
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCC--CCCCHHHHHH-HHCCCCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999998609896359699994766465--5666999999-9769998877267-73502168999999999997699767
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3455565--30210245677742042255315521123466678999988777776666677899998514999889988
Q gi|254780747|r 129 VGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 (293)
Q Consensus 129 vGsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~ 206 (293)
+=.-|+- ...|.... ..+.+ ..+.+..++ ....+ ..-.+.+++..++++++.++
T Consensus 105 viAGGvEsMS~~P~~~~----------~~~~~------~~~~~~~p~---~~~~M-----g~tAE~~A~~~gIsRe~qD~ 160 (384)
T PRK07661 105 VLAGGAESMSLVPMMGH----------VVRPN------SRLVEAAPE---YYMGM-----GHTAEQVAVKYGVSREDQDA 160 (384)
T ss_pred EEECCEECCCCCCCCCC----------CCCCC------CHHHCCCCH---HHCCH-----HHHHHHHHHHHCCCHHHHHH
T ss_conf 87546212257866766----------56898------122125843---33158-----79999999985999999999
Q ss_pred HHCCCCCCHHHHHHCCCCC
Q ss_conf 7349823788998779806
Q gi|254780747|r 207 LSDGRIWTGAEAKKVGLID 225 (293)
Q Consensus 207 ~~~g~~~~~~~A~~~GLvD 225 (293)
++-...-.+.+|.+.|..+
T Consensus 161 ~A~~Sh~rA~~A~~~G~f~ 179 (384)
T PRK07661 161 FAVRSHQRAAKALAEGKFA 179 (384)
T ss_pred HHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999859962
No 252
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.79 E-value=23 Score=15.91 Aligned_cols=72 Identities=28% Similarity=0.374 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999999986189987999975888888899-----9999999998414786799603323322321000111000130
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYA-----GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~-----~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p 125 (293)
.+++++|+.+..++.+..|++-= .|||..- -+.++++|. .++.||++-+++-... ...=..||.-...|
T Consensus 179 ~~I~~ai~~~~~~~~~DvIIi~R--GGGS~eDL~~FNdE~varaI~--~s~iPVISaIGHE~D~--Ti~D~VAD~Ra~TP 252 (443)
T PRK00286 179 ASIVEAIERANARGEVDVLIVAR--GGGSLEDLWAFNDEAVARAIA--ASKIPVISAVGHETDF--TIADFVADLRAPTP 252 (443)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHCCCHHHHHHHH--HCCCCEEECCCCCCCC--CHHHHHHHCCCCCH
T ss_conf 99999999985224888899936--878888976518799999998--4899789514667775--58888654037996
Q ss_pred HHH
Q ss_conf 135
Q gi|254780747|r 126 TSL 128 (293)
Q Consensus 126 ~s~ 128 (293)
++-
T Consensus 253 TaA 255 (443)
T PRK00286 253 TAA 255 (443)
T ss_pred HHH
T ss_conf 999
No 253
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=44.64 E-value=23 Score=15.90 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCC----CEEEEECCCCCCCCCCC
Q ss_conf 869999999998618998799997588-8888899999999999841478----67996033233223210
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRK----PVITEVHEMAASAGYLI 114 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~k----pvva~~~~~~~S~~Y~i 114 (293)
+.+++++.+ |+|--||+--+.| .-|..-..+.|.++|.++++++ -+=+.++=-|||||+.+
T Consensus 191 ~Pe~~~~~v-----DENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi~ 256 (493)
T TIGR01788 191 DPEEVVDLV-----DENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFIA 256 (493)
T ss_pred CHHHHHHHH-----CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 889999860-----767524888747232587088899999999974278874778766477446788113
No 254
>PRK02991 D-serine dehydratase; Provisional
Probab=44.08 E-value=24 Score=15.84 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=27.6
Q ss_pred EECCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHH
Q ss_conf 623869999999998618998799997588---88888999999999998
Q gi|254780747|r 46 QIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQK 92 (293)
Q Consensus 46 ~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~ 92 (293)
++.....+-+.|++-...+---.++|.-|| ..||+-+---|++-++.
T Consensus 79 pl~~i~~m~~~L~~~~~~~~~G~l~lK~Ds~LPIsGSIKARGGIyEVL~~ 128 (443)
T PRK02991 79 PLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKH 128 (443)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 65543999999977527888872687326778767552035308999999
No 255
>PRK05967 cystathionine beta-lyase; Provisional
Probab=44.04 E-value=17 Score=16.83 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~ 122 (293)
+.++++. +++.|.|++.. .+|...+.-...|.+.-++ .+ +.+.+++..++.-+. +...||-++
T Consensus 140 ~~~~~~i-~~~Tklv~~Etp~NP~l~v~Di~~ia~~A~~--~g--~~~vVDNTfatP~~~~Pl~~GADiVv 205 (392)
T PRK05967 140 AGIEKLM-RPNTKVVFTESPGSNTFEIQDIPAIAEAAHR--HG--AIVMMDNTWATPLYFRPLDFGVDISI 205 (392)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEEECHHHHHHHHHH--CC--CEEEEECCCCCCCEECCCCCCCCEEE
T ss_conf 9999744-8786599985589986455354999999987--69--87996177545342145655686899
No 256
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=43.90 E-value=24 Score=15.82 Aligned_cols=63 Identities=22% Similarity=0.479 Sum_probs=38.4
Q ss_pred EEEEEEEEEEECCHHHHHHHHHHHHCC----------CCCCEEEEECCCCCCCHHHHHH------HHHHHHHH-CCCCCE
Q ss_conf 289999766623869999999998618----------9987999975888888899999------99999984-147867
Q gi|254780747|r 37 HVARIAIRGQIEDSQELIERIERISRD----------DSATALIVSLSSPGGSAYAGEA------IFRAIQKV-KNRKPV 99 (293)
Q Consensus 37 ~i~~i~i~G~I~~~~~l~~~l~~a~~d----------~~ik~ivL~i~SpGG~~~~~~~------i~~ai~~~-k~~kpv 99 (293)
+|.++++.|.+. +..++|+++..+ .++.++|| |||...+... +.++|+++ +++||+
T Consensus 3 ~IGvl~~qGn~r---s~~~aL~~lG~~~~~v~~~~di~~ad~lIL----PGG~s~am~~ll~~~gl~~~i~~~i~~gkP~ 75 (191)
T PRK13525 3 KIGVLALQGAVR---EHIAALEALGAEAVEVRRPEDLDEIDGLIL----PGGESTTMGKLLRDFGLLEPLREFIASGLPV 75 (191)
T ss_pred EEEEEECCCCHH---HHHHHHHHCCCCEEEECCHHHHHHCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 799996478899---999999987997899899999953998997----8976589999999868689999999849985
Q ss_pred EEEECCC
Q ss_conf 9960332
Q gi|254780747|r 100 ITEVHEM 106 (293)
Q Consensus 100 va~~~~~ 106 (293)
.--|-++
T Consensus 76 LGIClGm 82 (191)
T PRK13525 76 FGTCAGM 82 (191)
T ss_pred EEECHHH
T ss_conf 7622212
No 257
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=43.74 E-value=14 Score=17.24 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV 122 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~ 122 (293)
.+.++++- +++.+.|+++- .+|-..+.-.+.|.+.-+ + ..+...+++..++.-+. +...+|-++
T Consensus 124 ~~~~~~~i-~~~Tklv~~EspsNP~l~v~Di~~ia~ia~---~-~gi~~vvDNT~atP~~~~Pl~~GaDiVi 190 (379)
T PRK06176 124 LSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAK---D-HGLLTIVDNTFATPYYQNPLLLGADIVV 190 (379)
T ss_pred HHHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHH---H-CCCEEEEECCCCCCCCCCHHHHCCCEEE
T ss_conf 68899656-877459999779998760158589999999---7-6987997367215133262341898899
No 258
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=43.67 E-value=24 Score=15.80 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----------CC
Q ss_conf 386999999999861899879999-7588888889999999999984147867996033233223210----------00
Q gi|254780747|r 48 EDSQELIERIERISRDDSATALIV-SLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI----------SC 116 (293)
Q Consensus 48 ~~~~~l~~~l~~a~~d~~ik~ivL-~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i----------As 116 (293)
.+.+++.+.|+ ++++++.|.+ +-+|+.|-....++|.++++++ + ....++..++=||..+ .+
T Consensus 117 v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~--g--~l~iVDaVsS~Gg~~~~vd~wgiDv~it 189 (383)
T COG0075 117 VDPEEVEEALD---KDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH--G--ALLIVDAVSSLGGEPLKVDEWGIDVAIT 189 (383)
T ss_pred CCHHHHHHHHH---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHC--C--CEEEEEECCCCCCCCCCHHHCCCCEEEE
T ss_conf 99999999985---289950899981157520137699999999972--9--8899982345788125444428458997
Q ss_pred CCCCCCCCHH
Q ss_conf 1110001301
Q gi|254780747|r 117 ASNIIVAAET 126 (293)
Q Consensus 117 ~ad~I~a~p~ 126 (293)
++.|-++.|-
T Consensus 190 gSQK~l~~PP 199 (383)
T COG0075 190 GSQKALGAPP 199 (383)
T ss_pred CCCHHCCCCC
T ss_conf 6720115898
No 259
>PRK05968 hypothetical protein; Provisional
Probab=43.19 E-value=18 Score=16.61 Aligned_cols=42 Identities=19% Similarity=0.022 Sum_probs=15.1
Q ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 987999975-8888888999999999998414786799603323322
Q gi|254780747|r 65 SATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 65 ~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+.|.|++.- .+|...+.-.+.|.+.-++ ..+...+++..++.
T Consensus 147 ~Tklv~~EtpsNP~l~v~DI~~ia~iA~~----~g~~~vVDNTfatP 189 (389)
T PRK05968 147 GAKLLYLESPTSWVFELQDIAALAALAKR----HGVVTVIDNSWASP 189 (389)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHH----CCCEEEEECCCCHH
T ss_conf 87289997899988727389999999998----39959997786116
No 260
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=42.86 E-value=25 Score=15.72 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999861899879999758888888-------9999999999984147867996033233223210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a 123 (293)
+.+++..+.|.++ +.- ++.-.||.|+.. .+.-+|...-.++..-.|.++.+.+.|+-||-|+-..||.++|
T Consensus 113 ~Ki~r~~~~A~~~-g~P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D~~im 190 (526)
T COG4799 113 KKILRAQELAIEN-GLP-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDFVIM 190 (526)
T ss_pred HHHHHHHHHHHHC-CCC-EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 0689999999980-997-79997154666355753323310898877876367877899984476663412354636999
Q ss_pred CHH
Q ss_conf 301
Q gi|254780747|r 124 AET 126 (293)
Q Consensus 124 ~p~ 126 (293)
.+.
T Consensus 191 v~~ 193 (526)
T COG4799 191 VRD 193 (526)
T ss_pred ECC
T ss_conf 848
No 261
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=42.77 E-value=25 Score=15.72 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999986189987999975888888899999999999841478679960
Q gi|254780747|r 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
+.-.+....+|++ ++|+=-+-|-++...+.+.+.|+++++.+..+..+
T Consensus 113 v~iaral~~~P~l--llLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiii 160 (200)
T cd03217 113 NEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160 (200)
T ss_pred HHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999609999--99969622699999999999999998579999999
No 262
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=42.77 E-value=25 Score=15.72 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=40.1
Q ss_pred EEEEEEECCH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 9976662386---9999999998618998799997588888889999999999984--147867996
Q gi|254780747|r 41 IAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITE 102 (293)
Q Consensus 41 i~i~G~I~~~---~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~--k~~kpvva~ 102 (293)
=.+.|.|+.+ +.+++.|++.+.. +|..++ . |=|-++=|-++++|.++ |+.||.|+-
T Consensus 139 t~~~Gli~~~~~m~kic~tIekvA~s-d~Tvll-L----GESGTGKEV~ArA~H~~S~R~~~~FVAI 199 (451)
T TIGR02915 139 TALEGLITSSPGMQKICRTIEKVAPS-DITVLL-L----GESGTGKEVLARALHELSDRKDKRFVAI 199 (451)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCC-CCEEEE-E----CCCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 10365220685067898886521200-001301-0----4667117899989842057897773444
No 263
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=42.60 E-value=25 Score=15.70 Aligned_cols=12 Identities=17% Similarity=0.014 Sum_probs=4.9
Q ss_pred CCCCCCHHHHHH
Q ss_conf 062389899999
Q gi|254780747|r 224 IDVVGGQEEVWQ 235 (293)
Q Consensus 224 vD~ig~~~~a~~ 235 (293)
||+=-.+|-|+.
T Consensus 232 vdGelq~D~Al~ 243 (324)
T PRK09653 232 IDGELQFDAAFV 243 (324)
T ss_pred ECCCCHHHHHCC
T ss_conf 247410666539
No 264
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=42.57 E-value=8.7 Score=18.61 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCC---CCCCCCCCC--CCCC
Q ss_conf 69999999998618998799997588-8888899999999999841478679960-332332---232100011--1000
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVITEV-HEMAAS---AGYLISCAS--NIIV 122 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvva~~-~~~~~S---~~Y~iAs~a--d~I~ 122 (293)
.+.|.++|+++.+--+-.+|+++=-. ||---.-.+.+-++-.+ |-+.||+-.- .++..| -||=+|+-| ++|.
T Consensus 111 EKKL~~aI~e~v~~Y~P~AvFVYsTCv~alIGDD~~AVCk~A~~-k~G~~ViPV~s~GF~G~NK~lGnk~AcdALl~~vi 189 (470)
T TIGR01283 111 EKKLFHAIREIVERYHPAAVFVYSTCVVALIGDDLEAVCKAAAE-KYGIPVIPVDSEGFYGSNKNLGNKLACDALLKHVI 189 (470)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCEECCEECCCHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 47899999999863299748994571310244888999999972-35860675157887777755002789999998638
Q ss_pred C------------------CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf 1------------------3013534555653021024567774204225531552
Q gi|254780747|r 123 A------------------AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 (293)
Q Consensus 123 a------------------~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~ 160 (293)
- +.=.++|-.-+.++.+-.+.||||+||++..-=+|+-
T Consensus 190 g~~ep~~~~~~~~~~~~~~~diNliGEFN~AGE~W~v~pLleklGi~V~~~~tGD~ 245 (470)
T TIGR01283 190 GTREPEPIPKSARRAGTTVHDINLIGEFNVAGEFWLVKPLLEKLGIRVLATITGDS 245 (470)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECHHCCCCCCCCCCHHHHCCCEEEEECCCCC
T ss_conf 98886657654456766567411152300001111001014338917999737888
No 265
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=42.49 E-value=25 Score=15.69 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 88888899999999999841478679960332332232100011100013013534--5556530210245677742042
Q gi|254780747|r 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSI 152 (293)
Q Consensus 75 SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~ 152 (293)
++-|+ +-+.+.++|+.+|+++||+++=++---.-|.++ .+|+.+-...-..+- .-|.+... --....+++|+.+
T Consensus 7 ~~~~~--~~~~V~~Ai~alr~G~~Viv~Dd~dREnEgDlv-~aAe~~T~e~i~fm~~~~~GliCva-~~~~~~~~L~Lp~ 82 (214)
T PRK01792 7 SPFGT--SEERVINAINAFKQGNGVLVLDDEDRENEGDLI-FPAETITPEQMAKLIRYGSGIVCLC-ITDELCQQLDLPP 82 (214)
T ss_pred HHCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCCEEEE-CCHHHHHHCCCCC
T ss_conf 57289--788999999999879969998289987640679-6855499999999999589778973-6999997779902
Q ss_pred EEEEECC-----CCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCC
Q ss_conf 2553155-----211234----6667899998877777666667789999851499988998873-49823788998779
Q gi|254780747|r 153 KSVKSSP-----MKAEPS----PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVG 222 (293)
Q Consensus 153 ~~~~~g~-----~K~~~~----p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~G 222 (293)
-+-...+ |.-..+ .++..|..+|...-.. .+ ..+-.+++ +. -|.+| .-.|.+-|
T Consensus 83 mv~~n~~~~~taFtvsvd~~~g~~TGISa~DRa~TIr~----------l~--~~~~~~~d---f~~PGHVf-PL~a~~gG 146 (214)
T PRK01792 83 MVQHNTSVNKTAFTVTIEAAKGVSTGVSAADRVTTIQA----------AI--ADNAKPTD---LHRPGHVF-PLRAANGG 146 (214)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH----------HH--CCCCCHHH---CCCCCCCC-EEEECCCC
T ss_conf 14667788888779999657897688698999999999----------85--79999788---49999768-24445698
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 8062389899999999741877653012014
Q gi|254780747|r 223 LIDVVGGQEEVWQSLYALGVDQSIRKIKDWN 253 (293)
Q Consensus 223 LvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~ 253 (293)
+.-+-|. -|+--.|..+++....-.+-...
T Consensus 147 vl~R~GH-TEaavdL~~lAGl~P~avicEil 176 (214)
T PRK01792 147 VLTRRGH-TEAAVDLARLAGYKEAGVICEIT 176 (214)
T ss_pred CCCCCCH-HHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 8646974-88999999982999719999984
No 266
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , . Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2. Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=42.45 E-value=25 Score=15.68 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCCC-CEEEEECCCC-C-CCHHH--HHHHHHHHHHHCCCCCEEEEECCCCC--CCCCCCCCCCC
Q ss_conf 9999999998618998-7999975888-8-88899--99999999984147867996033233--22321000111
Q gi|254780747|r 51 QELIERIERISRDDSA-TALIVSLSSP-G-GSAYA--GEAIFRAIQKVKNRKPVITEVHEMAA--SAGYLISCASN 119 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~i-k~ivL~i~Sp-G-G~~~~--~~~i~~ai~~~k~~kpvva~~~~~~~--S~~Y~iAs~ad 119 (293)
+.+++.|+++.+.-.- +-|++-+.+. | |+--+ -+++...|..++.+-++=+ +-|.|. .+||=|.+..+
T Consensus 151 ~~~i~~ln~v~~~t~~n~~v~i~LEtmAG~Gn~~G~~f~eLk~iI~~i~~~~r~GV-ClDTCH~FAaGYDI~T~~~ 225 (318)
T TIGR00587 151 DNLIESLNEVIEETKNNKFVIIVLETMAGQGNEIGRSFEELKYIIDGIKDKSRIGV-CLDTCHTFAAGYDIRTVED 225 (318)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHEECCCEEE-ECCHHHHHHCCCCCCCHHH
T ss_conf 99999999986531699828999706687566778888999999853200473045-2222204121467777777
No 267
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=42.00 E-value=26 Score=15.64 Aligned_cols=39 Identities=13% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |++..+....+.++.+..++|+.-.|-+.
T Consensus 43 ~p~~ivL---SpGPG~P~~~~~~~~~i~~~~~~iPILGIClG~ 82 (191)
T PRK06774 43 APSHVVI---SPGPCTPNEAGISLAVIRHFADKLPILGVCLGH 82 (191)
T ss_pred CCCEEEE---CCCCCCHHHHCCHHHHHHHHCCCCCEEEEHHHH
T ss_conf 9996999---999989679073068999744699788616879
No 268
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=41.98 E-value=26 Score=15.64 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred HHHHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 999999986189-98799997-5888888899999999999---841478679960332332232100011100013013
Q gi|254780747|r 53 LIERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 (293)
Q Consensus 53 l~~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s 127 (293)
+...|+++.-|+ .|..+++= ++..|+.. ..+++... .+..+.|.++ ++..|+||.--+..+++.|-.-...
T Consensus 34 i~~~l~r~~i~p~~Id~vi~G~v~~~g~~~---~n~aR~~~L~aGlp~~vpa~t-Vn~~CaSGl~Av~~A~~~I~~G~~d 109 (382)
T PRK07801 34 LRGLVDRNDIDPAAVDDVIFGCVDAIGPQA---GNIARTSWLAAGYPEEVPGVT-VDRQCGSSQQAIHFAAQAIMSGTAD 109 (382)
T ss_pred HHHHHHHHCCCHHHCCEEEEECCCCCCCCC---CCHHHHHHHHCCCCCCCCEEE-ECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999809798998989997166656655---679999999769998886488-8412158999999999886289967
Q ss_pred HHHHHHHH--HCCCHHHHH--HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCH
Q ss_conf 53455565--302102456--77742042255315521123466678999988777776666677--8999985149998
Q gi|254780747|r 128 LVGSIGVL--FQYPYVKPF--LDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW--FVRLVSESRNIPY 201 (293)
Q Consensus 128 ~vGsiGv~--~~~~~~~~l--l~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~--f~~~Va~~R~~~~ 201 (293)
++=..|+- ...|..... -.++|.. .|+.. .......+-+.-... -.+.+++.-++++
T Consensus 110 v~lagGvEsMS~~P~~~~~~~~~~~g~~-------------~~~~~----~~~~~~~~~d~~~~~~~~ae~~a~~~~isR 172 (382)
T PRK07801 110 VIVAGGVQNMSQIPISSAMLVGEQLGFT-------------SPTNE----SKGWLHRYGDQEISQFRGAELIAEKWNLSR 172 (382)
T ss_pred EEEECCEEECCCCCCCCCCCCCCCCCCC-------------CCCCC----CCCHHHHCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 4665154322557653112334202566-------------75554----311566547865517679999999969899
Q ss_pred HHHHHHHCCCCCCHHHHHHCCCCC
Q ss_conf 899887349823788998779806
Q gi|254780747|r 202 DKTLVLSDGRIWTGAEAKKVGLID 225 (293)
Q Consensus 202 ~~~~~~~~g~~~~~~~A~~~GLvD 225 (293)
+..++++-...-.+.+|.+.|.-+
T Consensus 173 e~~D~~A~~Sh~~A~~A~~~g~f~ 196 (382)
T PRK07801 173 EEMERYALTSHERAFAAIRAGHFD 196 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 999999999999999999828623
No 269
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.96 E-value=26 Score=15.64 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-----CCEEE-EECCCC--CCCCCCCCCCC--
Q ss_conf 869999999998618998799997588888889999999999984147-----86799-603323--32232100011--
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-----KPVIT-EVHEMA--ASAGYLISCAS-- 118 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~-----kpvva-~~~~~~--~S~~Y~iAs~a-- 118 (293)
+.+.+.+.|+.+.+--+-+.|.+.- ..-+-.-.+.|...+++++.+ .||+. ...++. .+.||.+|..+
T Consensus 68 Ge~kL~~aI~~~~~~~~P~~i~V~s--TC~~e~IGDDi~~v~k~~~~~~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali 145 (429)
T cd03466 68 GEKNLKKGLKNVIEQYNPEVIGIAT--TCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIV 145 (429)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEC--CCHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 5999999999999841998899965--74386523639999999987347888837986389876867899999999999
Q ss_pred CCCCCCHHH--HHHHHH---HHHCCCHHHHHHHHHHHCCEEE
Q ss_conf 100013013--534555---6530210245677742042255
Q gi|254780747|r 119 NIIVAAETS--LVGSIG---VLFQYPYVKPFLDKLGVSIKSV 155 (293)
Q Consensus 119 d~I~a~p~s--~vGsiG---v~~~~~~~~~ll~k~gi~~~~~ 155 (293)
+++...+.. .+-.+| ......-++++++.+|+++.++
T Consensus 146 ~~~~~~~~~~~~vNli~~~~~~gD~~eik~ll~~~Gl~~~vl 187 (429)
T cd03466 146 KNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILL 187 (429)
T ss_pred HHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 984779887885678179897666999999999829957971
No 270
>KOG1683 consensus
Probab=41.90 E-value=26 Score=15.63 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHH
Q ss_conf 89999851499988998873498237889987798062389--899999
Q gi|254780747|r 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQ 235 (293)
Q Consensus 189 f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~ 235 (293)
.++.+.+.=|.... -..+.|+..|.-.+|++.||+|+++. .+++++
T Consensus 200 ~iD~~~t~fGf~~g-~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~ 247 (380)
T KOG1683 200 LIDSLITKFGFRVG-ERALADGVGFDVAEALAVGLGDEIGPRIEEELLE 247 (380)
T ss_pred HHHHHHHHCCCCCC-HHHHHHCCCCCHHHHHHHCCCHHCCCHHHHHHHH
T ss_conf 99889986186140-7787541386589987211121103035999999
No 271
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=41.84 E-value=26 Score=15.63 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999984
Q gi|254780747|r 84 EAIFRAIQKV 93 (293)
Q Consensus 84 ~~i~~ai~~~ 93 (293)
+-||.+|+=+
T Consensus 117 ~tlRpaLqiI 126 (322)
T TIGR00651 117 DTLRPALQII 126 (322)
T ss_pred HHCCHHHHHH
T ss_conf 5404256652
No 272
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=41.57 E-value=26 Score=15.60 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=30.9
Q ss_pred EEEECCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHH
Q ss_conf 66623869999999998618998799997588---88888999999999998
Q gi|254780747|r 44 RGQIEDSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQK 92 (293)
Q Consensus 44 ~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~ 92 (293)
+-++.....+.+.|++-...+---.++|.-|| ..||+-+---|++-++.
T Consensus 52 ESpl~~i~~m~~~L~~~~~~~i~G~l~lK~Ds~LPIsGSIKARGGIyEVL~~ 103 (404)
T cd06447 52 ESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKH 103 (404)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEECCCHHHHHHHH
T ss_conf 4675342889999988637998873687326778767663035408999999
No 273
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=41.52 E-value=22 Score=16.05 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 9999986189987999975-888888899999999999841478679960332332
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S 109 (293)
+.++++- +++.+.|++.- .+|-..+.-.+.|.+.-+ .+-+.+.+++..++
T Consensus 137 ~~~~~ai-~~~T~lv~~EtpsNP~l~v~Di~~i~~iA~----~~g~~~vVDNT~at 187 (391)
T PRK08133 137 DAWRAAV-RPNTKLFFLETPSNPLTELADIAALAEIAH----AAGALLVVDNCFCT 187 (391)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHH----HCCCEEEEECCCCC
T ss_conf 9999745-878459999789999866555399999987----55875998789765
No 274
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.22 E-value=26 Score=15.57 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCC
Q ss_conf 98514999889988734982378899877980623
Q gi|254780747|r 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 (293)
Q Consensus 193 Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~i 227 (293)
..+++|++.+..+++.....|.|.-.++.|.+|++
T Consensus 462 lr~~kG~t~~~A~~~~~~~~~fg~mmv~~g~aDg~ 496 (702)
T PRK05632 462 LRKHKGLTEEVAREQLEDNVVLGTMMLALGEVDGL 496 (702)
T ss_pred HHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEE
T ss_conf 97308989999999860740389999864898879
No 275
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=40.91 E-value=27 Score=15.54 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH--HHC-CCCCEEEEECCCCC
Q ss_conf 699999999986189987999975888888899999999999--841-47867996033233
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ--KVK-NRKPVITEVHEMAA 108 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~--~~k-~~kpvva~~~~~~~ 108 (293)
.++-.+.|.+|..|++|++|+.-. ||.- +.+|-..|. .++ ..|+++-|-+-.+.
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~r---GGyg--a~rlL~~LD~~~i~~~PK~~iGySDiTaL 107 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTI---GGDD--SNELLPYLDYELIKKNPKIFIGYSDITAL 107 (308)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECC---CCCC--HHHHHHHCCHHHHHHCCCEEEECCHHHHH
T ss_conf 899999999986299989999917---8777--88887646755686399489971464799
No 276
>TIGR01431 adm_rel adenosine deaminase-related growth factor; InterPro: IPR006331 Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, molluscs, and vertebrates ..
Probab=40.45 E-value=23 Score=15.95 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999887777766666778999
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
|+|+++...++....-|++|++.
T Consensus 462 L~~~eK~~a~~~w~~~Wd~Fi~~ 484 (486)
T TIGR01431 462 LSEEEKKTAKAKWKKQWDKFIDE 484 (486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88678999999875223468762
No 277
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.22 E-value=27 Score=15.47 Aligned_cols=11 Identities=27% Similarity=0.114 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780747|r 51 QELIERIERIS 61 (293)
Q Consensus 51 ~~l~~~l~~a~ 61 (293)
.++++.|--..
T Consensus 40 TTll~~i~Gl~ 50 (210)
T cd03269 40 TTTIRMILGII 50 (210)
T ss_pred HHHHHHHHCCC
T ss_conf 99999996002
No 278
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.10 E-value=23 Score=15.89 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321---00011100
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNII 121 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I 121 (293)
+.++++- +++.+.|+++- .+|-..+.-...|.+.-+ +. .+.+.+++..++. |+ +...||=+
T Consensus 140 ~~~~~~i-~~~Tklv~~EspsNP~l~v~Di~aia~iA~---~~-g~~~vVDNT~atP-~~~~Pl~~GaDiv 204 (433)
T PRK08134 140 DGWRAAI-RPNTRLLFGETLGNPGLEVLDIPTVAAIAH---EA-GVPLLVDSTFTTP-YLLRPFEHGADLV 204 (433)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH---HC-CCEEEEECCCCHH-HHCCHHHHCCCEE
T ss_conf 6788755-987528998538999750358999999997---56-7619971665115-3058055289889
No 279
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.97 E-value=28 Score=15.44 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 245677742042255315521123466---6789999-887777766666778999985
Q gi|254780747|r 141 VKPFLDKLGVSIKSVKSSPMKAEPSPF---SEVNPKA-VQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~---~~~s~e~-~~~~~~~l~~~~~~f~~~Va~ 195 (293)
-.++++.+|.+.--+.-.. -.|+ .+.|.++ .+.+++.|.+.+.+|++.+..
T Consensus 344 ~~~~~~~~~~D~lRYyL~~----~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~ 398 (558)
T COG0143 344 PDELLEQYGVDALRYYLAR----ELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLG 398 (558)
T ss_pred HHHHHHHCCCHHHHHHHHH----HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999987482385798887----377888888899999999989988788899999999
No 280
>PRK06434 cystathionine gamma-lyase; Validated
Probab=39.87 E-value=24 Score=15.88 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=6.2
Q ss_pred HHHHHHHHHHCCEEE
Q ss_conf 245677742042255
Q gi|254780747|r 141 VKPFLDKLGVSIKSV 155 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~ 155 (293)
++..+.++||++..+
T Consensus 120 ~~~~l~~~Gi~v~~v 134 (384)
T PRK06434 120 FNKVLKTLGIHVDYI 134 (384)
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 998887569727995
No 281
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=39.58 E-value=28 Score=15.41 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |.+.....+.+.++++..++|+.-.|-+.
T Consensus 44 ~~~~IIl---SpGPg~p~~~~~~~~~i~~~~~~~PILGIClG~ 83 (191)
T PRK06895 44 NFSHILI---SPGPDVPRAYPQLFAMLERYYQQKSILGVCLGH 83 (191)
T ss_pred CCCEEEE---ECCCCCCCCCCHHHHHHHHHCCCCCEEEECHHH
T ss_conf 5896999---089998010522499999860689878982999
No 282
>PRK05939 hypothetical protein; Provisional
Probab=39.09 E-value=20 Score=16.39 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321--00011100
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNII 121 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I 121 (293)
+.++++- +++.|.|++.- .+|...+.-...|.+.-++ ..+...+++..++.-++ +...||-+
T Consensus 121 ~~~~~ai-~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~----~g~~~vVDNT~atP~~~~Pl~~GaDiv 185 (396)
T PRK05939 121 QQVAAAI-RPNTRMVFVETIANPGTQVADLAGIGALCRE----RGLVYVVDNTMTSPWLFRPKSVGASLV 185 (396)
T ss_pred HHHHHHH-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHH----CCCEEEEECCCCHHHHCCHHHHCCCEE
T ss_conf 9999861-8566189998089998707589999999998----399799977763042058556389889
No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=38.76 E-value=29 Score=15.33 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=12.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23466678999988777776666
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
.-||+..+.+..++.+.+.+..+
T Consensus 135 lDEPTsgLD~~~~~~i~~~l~~l 157 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH
T ss_conf 94898788989999999999999
No 284
>PRK08041 consensus
Probab=38.48 E-value=29 Score=15.30 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999986189-98799997-588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r 55 ERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 55 ~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+.|+++.-|+ .|..|++= +-+.|.. ..+.+.+. +..+ -|-++ ++..|+||..-+..++..|-+....+
T Consensus 36 ~~l~r~gi~~~~ID~vi~G~v~~~g~g----~n~aR~~a-l~aGlp~~vpa~t-Vnr~C~SGl~Ai~~Aa~~I~~G~~dv 109 (391)
T PRK08041 36 ALIERTGVPAYAVDEVILGQVLTAGAG----QNPARQSA-IKGGLPNSVSAIT-INDVCGSGLKALHLATQAIQCGEADI 109 (391)
T ss_pred HHHHHCCCCHHHCCEEEEEECCCCCCC----CCHHHHHH-HHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999981989899898999805765656----65999999-9769998887178-75165687899999999986799766
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 3455565--30210245677742042255315521123466--6789999887777766666778999985149998899
Q gi|254780747|r 129 VGSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 (293)
Q Consensus 129 vGsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~ 204 (293)
+=..|+- .+.|++-.- .+.|. ..|..... +.+ ..+.+.. -+....+--+.+++..++++++.
T Consensus 110 vlagGvEsmS~~P~~~~~-~~~g~-----~~g~~~~~-d~~~~dgl~d~~-------~~~~Mg~tAE~~A~~~gIsRe~q 175 (391)
T PRK08041 110 VIAGGQENMSRAPHVLTD-SRTGA-----QLGNSQLV-DSLVHDGLWDAF-------NDYHIGVTAENLAREYGISRELQ 175 (391)
T ss_pred EEEEEEECCCCCCCCCCC-CCCCC-----CCCCCCCC-HHHCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 777412214658411344-44466-----66754000-001134553545-------78737788999999859899999
Q ss_pred HHHHCCCCCCHHHHHHCCCCCC
Q ss_conf 8873498237889987798062
Q gi|254780747|r 205 LVLSDGRIWTGAEAKKVGLIDV 226 (293)
Q Consensus 205 ~~~~~g~~~~~~~A~~~GLvD~ 226 (293)
++++-...-.+.+|.+.|.-++
T Consensus 176 D~~A~~Sh~rA~~A~~~G~f~~ 197 (391)
T PRK08041 176 DAYALSSQQKARAAIDAGRFKD 197 (391)
T ss_pred HHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999987599753
No 285
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=38.27 E-value=29 Score=15.28 Aligned_cols=180 Identities=12% Similarity=0.169 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC-------CCC
Q ss_conf 99999999861899879999758888-888999999999998414786799603323322321---0001-------110
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA-------SNI 120 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~-------ad~ 120 (293)
..++.+... + -.+||| ||| |.+..+-...+.+++++.++|+.-.|-+.-+=+.++ +..+ +..
T Consensus 39 ~~~e~~~~~--~--p~~IVl---SPGPG~P~dag~~~~ii~~~~~~iPILGICLGhQ~ia~~~Gg~v~~a~~~~HGk~s~ 111 (531)
T PRK09522 39 TLIERLATM--S--NPVLML---SPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASS 111 (531)
T ss_pred CCHHHHHHC--C--CCEEEE---CCCCCCCHHCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEE
T ss_conf 019999724--9--596998---999989023657399999865999989987877899997298896779843233656
Q ss_pred CCCCHHHHHHHH----HHHHCC-CHHHHHHHHHHHCC------EEEEECCCCCCCCCCCC---CCHHHHHHHHHHHHHH-
Q ss_conf 001301353455----565302-10245677742042------25531552112346667---8999988777776666-
Q gi|254780747|r 121 IVAAETSLVGSI----GVLFQY-PYVKPFLDKLGVSI------KSVKSSPMKAEPSPFSE---VNPKAVQMMQDVVDSS- 185 (293)
Q Consensus 121 I~a~p~s~vGsi----Gv~~~~-~~~~~ll~k~gi~~------~~~~~g~~K~~~~p~~~---~s~e~~~~~~~~l~~~- 185 (293)
|.-+..+++-.+ -+.+.+ .....+.+.+-|.. -.++.-+++-.+=.|+| +|+..++.++..|+-.
T Consensus 112 i~~~~~~lF~glp~~~~v~rYHSl~~~~lP~~l~v~A~~~g~iMai~h~~~pi~GVQFHPESi~T~~G~~il~NFLn~~~ 191 (531)
T PRK09522 112 IEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 191 (531)
T ss_pred EEECCCCCCCCCCCCCEEEEECEECCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf 79898520289999977996443304479998799971699999999899986998208754688777999999856543
Q ss_pred --------HHHHHHHHHHCCCCCHHHHHHH----HCCCCCCHHH-H----H--HCCCCCCCCCHHHHHHHHH
Q ss_conf --------6778999985149998899887----3498237889-9----8--7798062389899999999
Q gi|254780747|r 186 --------YHWFVRLVSESRNIPYDKTLVL----SDGRIWTGAE-A----K--KVGLIDVVGGQEEVWQSLY 238 (293)
Q Consensus 186 --------~~~f~~~Va~~R~~~~~~~~~~----~~g~~~~~~~-A----~--~~GLvD~ig~~~~a~~~l~ 238 (293)
...++..+.+++.++.++.... .+|+.=-+|- | + +===+|+|...-.++.+..
T Consensus 192 ~~~~~~~~~k~~l~kl~~g~~Lt~~ea~~~m~~im~G~~t~~qi~a~L~~lr~kGEt~~Ei~g~a~amr~~a 263 (531)
T PRK09522 192 QKLEPTNTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENA 263 (531)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 435544408999999866999999999999999968999999999999999852898999999999999848
No 286
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=38.06 E-value=30 Score=15.26 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=39.8
Q ss_pred EEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 289999766623--869999999998618998799997588-8888899999999999841478679
Q gi|254780747|r 37 HVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNRKPVI 100 (293)
Q Consensus 37 ~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~kpvv 100 (293)
.+.+.+++|++. +.+++.+.+....++ +.+.++++..+ +.-+.++.+.+.+.+++++++...+
T Consensus 444 ~~~v~ri~gplfF~~~~~~~~~i~~~~~~-~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~ 509 (554)
T COG0659 444 GVLVYRLSGPLFFGNADRLERALLGLIEE-RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQL 509 (554)
T ss_pred CEEEEEECCCEEEECHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 77999926863672069999999977753-7877999856688578049999999999999779889
No 287
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=37.73 E-value=30 Score=15.22 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCC----CCCCCCCCCCCCCCCH
Q ss_conf 999999999861899879999758888888999999999998414786799603-32332----2321000111000130
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH-EMAAS----AGYLISCASNIIVAAE 125 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~-~~~~S----~~Y~iAs~ad~I~a~p 125 (293)
-++++.|.+|..+- .+|++. ||+-...+-.|++||+.. ..|++-.-- +..+- -.-|+|-.|.-+++-
T Consensus 54 g~Lid~Ihea~~~~--~~IvIN---pga~THTSvAlrDAi~av--~iP~vEVHlSNihaRE~FRhhS~~s~~a~GvI~G- 125 (146)
T COG0757 54 GELIDWIHEARGKA--GDIVIN---PGAYTHTSVALRDAIAAV--SIPVVEVHLSNIHAREEFRHHSYTSPVAKGVICG- 125 (146)
T ss_pred HHHHHHHHHHHCCC--CEEEEC---CCCCHHHHHHHHHHHHHC--CCCEEEEEECCCHHCCCCCCCCCCCCHHCEEEEC-
T ss_conf 78999999852248--729984---763105689999999845--7987999824711045000133105024136843-
Q ss_pred HHHHHHHHHHHCCCHHHHHH
Q ss_conf 13534555653021024567
Q gi|254780747|r 126 TSLVGSIGVLFQYPYVKPFL 145 (293)
Q Consensus 126 ~s~vGsiGv~~~~~~~~~ll 145 (293)
.|..|..+......+.+
T Consensus 126 ---lG~~GY~lAl~~l~~~~ 142 (146)
T COG0757 126 ---LGAQGYLLALRALVNIL 142 (146)
T ss_pred ---CCHHHHHHHHHHHHHHH
T ss_conf ---76888999999999986
No 288
>PTZ00107 hexokinase; Provisional
Probab=37.69 E-value=30 Score=15.22 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=45.1
Q ss_pred CEEEEEC----CCC--------CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH-H
Q ss_conf 7999975----888--------88889999999999984147867996033233223210001110001301353455-5
Q gi|254780747|r 67 TALIVSL----SSP--------GGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI-G 133 (293)
Q Consensus 67 k~ivL~i----~Sp--------GG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsi-G 133 (293)
+|++++. +.+ |=++ .+.+.+++++-.-+-.|+|.++|.. |.++|++=..=-..|...+|.| |
T Consensus 193 ~G~Li~WTKGF~~~~a~~~gVeGkDV--v~lL~~Ai~r~~l~v~V~AlvNDTV---GTL~a~aY~~~~~~~~~~IG~I~G 267 (485)
T PTZ00107 193 NAILLDWTKGFETGRATNDQVEGRDV--GKLMNEAFKRNNINAEVSIVLNDTV---GTLMSCAYQKPKDYPPCRVGVILG 267 (485)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHCCCCCEEEEEEECCH---HHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf 36986414750457666788776617--9999999983499814999995078---877665404788886616999983
Q ss_pred HHHCCCHHHHHHHHHHHCCEEE--EECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6530210245677742042255--31552112346667899998877
Q gi|254780747|r 134 VLFQYPYVKPFLDKLGVSIKSV--KSSPMKAEPSPFSEVNPKAVQMM 178 (293)
Q Consensus 134 v~~~~~~~~~ll~k~gi~~~~~--~~g~~K~~~~p~~~~s~e~~~~~ 178 (293)
.-...-+...-..+.+..-.++ -+|.|-+ . -|.++-+++.=
T Consensus 268 TGtNacY~E~~~~~~~~~g~iINtEWG~F~~---~-lp~T~~D~~lD 310 (485)
T PTZ00107 268 TGFNICYEEDEYKRYGYVGKVINIECGNFDK---E-LPLNPVDFEID 310 (485)
T ss_pred CCCCCEEEEHHHHCCCCCCCEEEEEECCCCC---C-CCCCHHHHHHH
T ss_conf 5611156404333147778878852015899---8-88878889875
No 289
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=37.47 E-value=30 Score=15.20 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=42.3
Q ss_pred CCCCCCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 565556778728999976662386--9999999998618998799997588888889
Q gi|254780747|r 27 WSSHVEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAY 81 (293)
Q Consensus 27 ~~~~~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~ 81 (293)
.......+...-.|.|..|++... ..+.+.+++.++.....-+|+-++|.+|...
T Consensus 23 ~a~~~~~p~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~I 79 (271)
T COG1512 23 FAEPIPAPTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETI 79 (271)
T ss_pred HCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
T ss_conf 125567876653342053458755777899999999735586189999458999798
No 290
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=37.19 E-value=30 Score=15.17 Aligned_cols=138 Identities=12% Similarity=0.185 Sum_probs=69.1
Q ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf 9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA 117 (293)
Q Consensus 41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ 117 (293)
+++-|...+.++.++.+.. ....-++++++-||.+.. + .+++++...|++.+... ....|. +...
T Consensus 27 ~~vv~~~~~~~~~l~~~~~----~~~dvvllD~~mp~~~g~--~----~~~~l~~~~~vivls~~--~~~~~~~~a~~~G 94 (196)
T PRK10360 27 LQVVAEFGSGREALAGLPG----RGVQVCICDISMPDISGL--E----LLSQLPKGMATIMLSVH--DSPALVEQALNAG 94 (196)
T ss_pred EEEEEEECCHHHHHHHHHH----CCCCEEEECCCCCCCCCH--H----HHHHHHCCCCEEEEEEC--CCHHHHHHHHHCC
T ss_conf 5999998999999998874----499999987887886207--7----99998438748999730--7599999999759
Q ss_pred CCCCCC---CHHHHHHHHHHHH-CCCHHHH-HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110001---3013534555653-0210245-6777420422553155211234666789999887777766666778999
Q gi|254780747|r 118 SNIIVA---AETSLVGSIGVLF-QYPYVKP-FLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 118 ad~I~a---~p~s~vGsiGv~~-~~~~~~~-ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
++-.+. ++..++-.|-.+. ...++.. +..++ ...+-.++|+.+++.++-+.++.. ...
T Consensus 95 a~g~l~K~~~~~el~~aI~~v~~G~~~~~~~~~~~l--------------~~~~~~~LT~RE~eVL~lia~G~s---nke 157 (196)
T PRK10360 95 ARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKL--------------ASGRQDPLTKRERQVAEKLAQGMA---VKE 157 (196)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHH--------------HCCCCCCCCHHHHHHHHHHHCCCC---HHH
T ss_conf 988997789999999999999869956799999998--------------716768999799999999987999---999
Q ss_pred HHHCCCCCHHHHHHH
Q ss_conf 985149998899887
Q gi|254780747|r 193 VSESRNIPYDKTLVL 207 (293)
Q Consensus 193 Va~~R~~~~~~~~~~ 207 (293)
||+..+++..+++..
T Consensus 158 IA~~L~IS~~TVk~h 172 (196)
T PRK10360 158 IAAELGLSPKTVHVH 172 (196)
T ss_pred HHHHHCCCHHHHHHH
T ss_conf 999969999999999
No 291
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.12 E-value=29 Score=15.30 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322321---000111000
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCASNIIV 122 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ad~I~ 122 (293)
.+.++++ .+++.|.|++.- .+|-..+.-.+.|.+.-++ .+-|+ .+++..++. |+ +...||-++
T Consensus 137 ~~~~~~~-~~~~Tkli~~EtpsNP~l~v~Di~~ia~iA~~--~gi~~--vVDNTfatP-~~~rPl~~GaDiVv 203 (432)
T PRK06702 137 ADEIVAL-ANDKTKLVYAESLGNPAMNVLNFKEFSDAAKE--LEVPF--IVDNTLATP-YLCQAFEHGANIIV 203 (432)
T ss_pred HHHHHHH-CCCCCEEEEEEECCCCCCEEECHHHHHHHHHH--CCCEE--EEECCCCCC-CCCCCHHCCCCEEE
T ss_conf 9999974-57875089997279997320279999999976--69818--963576430-10462012898999
No 292
>PRK10744 phosphate transporter subunit; Provisional
Probab=36.65 E-value=31 Score=15.12 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780747|r 51 QELIERIERI 60 (293)
Q Consensus 51 ~~l~~~l~~a 60 (293)
..+++.|...
T Consensus 50 STLlk~i~gl 59 (257)
T PRK10744 50 STLLRTFNKM 59 (257)
T ss_pred HHHHHHHHHH
T ss_conf 9999999876
No 293
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=36.59 E-value=31 Score=15.11 Aligned_cols=18 Identities=44% Similarity=0.807 Sum_probs=7.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 466678999988777776
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVV 182 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l 182 (293)
||+..+.+..++.+.+++
T Consensus 159 EPt~GLDp~~~~~i~~~i 176 (232)
T cd03218 159 EPFAGVDPIAVQDIQKII 176 (232)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 985688999999999999
No 294
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=36.55 E-value=22 Score=16.02 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 86999999999861899879999758888888999999999998414786799603323322
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+.++..+.+++|++ .-.|-|++ -||.+.+-..|.+.++..+. .-++.++.+||
T Consensus 38 ~T~~W~~Vl~qAa~---lGvlqlHf--SGGEP~aR~DL~eLv~~A~~----LGlYtNLITSG 90 (363)
T TIGR02109 38 TTEEWTDVLTQAAE---LGVLQLHF--SGGEPLARPDLVELVAHARR----LGLYTNLITSG 90 (363)
T ss_pred CHHHHHHHHHHHHH---CCCEEEEC--CCCCCCCCCCHHHHHHHHHH----CCCCHHHHHHH
T ss_conf 88899999999985---39067513--07766633577999999977----58701467763
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.13 E-value=32 Score=15.07 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf 69999999998618998799997588888889999999999984147867996033233223210001110001-3013
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETS 127 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s 127 (293)
+++-+.-.+....++.-.-++|+=-+.|-++...+++.+.|+++++.+..+.++.+.- .. +..||+|+. .++.
T Consensus 92 qkQRvaiAraL~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~----~~-~~~aDrii~l~~G~ 165 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL----DV-LSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HH-HHHCCEEEEECCCC
T ss_conf 9999999999986899868997177445898799999999999998799899994787----99-98399999945997
No 296
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=36.07 E-value=32 Score=15.06 Aligned_cols=62 Identities=15% Similarity=0.349 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC
Q ss_conf 99999999986189987999975--8888888999999999998414-7867996033233223210
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI 114 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i 114 (293)
+.+-+.|+.- .-++|.-|++.+ ||.||.+...+.|++.=+-.++ +.|++-=..-.+ --+|+|
T Consensus 139 ~kLe~~i~~~-g~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~giplvlDaaRfa-ENAyFI 203 (431)
T cd00617 139 AKLEKLIDEV-GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFA-ENAYFI 203 (431)
T ss_pred HHHHHHHHHH-CCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH-HHHHHH
T ss_conf 9999999873-8666108999986368788566789999999999980997998766788-768999
No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=36.02 E-value=32 Score=15.05 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf 6999999999861899879999758888888999999999998414786799603323322321000111000-130135
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIV-AAETSL 128 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~-a~p~s~ 128 (293)
+++.+.-....+.+|++ ++|+=-+-+-++...+++.+.|+++++.+..+.++.+.. .+++..||+|+ +..+.+
T Consensus 148 qkQrv~iA~aL~~~p~l--LilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~isH~l----~~v~~~aDrv~vl~~G~i 221 (513)
T PRK13549 148 QQQLVEIAKALNKQARL--LILDEPTASLTESETAILLDIIRDLKQHGIACIYISHKL----NEVKAISDTICVIRDGRH 221 (513)
T ss_pred HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH----HHHHCCCCEEEECCCCCE
T ss_conf 99999998877529988--640667578885777999999999875596799994571----430300987404489858
Q ss_pred H
Q ss_conf 3
Q gi|254780747|r 129 V 129 (293)
Q Consensus 129 v 129 (293)
+
T Consensus 222 v 222 (513)
T PRK13549 222 I 222 (513)
T ss_pred E
T ss_conf 8
No 298
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=35.80 E-value=32 Score=15.03 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999999986189-987999975888888899999999999---8414786799603323322321000111000130135
Q gi|254780747|r 53 LIERIERISRDD-SATALIVSLSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 53 l~~~l~~a~~d~-~ik~ivL~i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+...|+++.-|+ .|..|++=--.++|. ...+.+.+. .+..+.|.+. ++..|+||.--+..++..|-+-...+
T Consensus 30 i~~al~~agl~~~~Id~vi~G~~~~~g~---g~n~aR~~al~aGlp~~vp~~t-V~~aCaSG~~Ai~~A~~~I~sG~~dv 105 (386)
T cd00751 30 IKALLERAGLDPEEVDDVIMGNVLQAGE---GQNPARQAALLAGLPESVPATT-VNRVCGSGLQAVALAAQSIAAGEADV 105 (386)
T ss_pred HHHHHHHCCCCHHHCCEEEEEECCCCCC---CCCHHHHHHHHCCCCCCCCEEE-EECHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 9999998498989999899995066665---6639999999769998886588-84221687999999974110799778
Q ss_pred HHHHHH
Q ss_conf 345556
Q gi|254780747|r 129 VGSIGV 134 (293)
Q Consensus 129 vGsiGv 134 (293)
+=..|+
T Consensus 106 vla~Gv 111 (386)
T cd00751 106 VVAGGV 111 (386)
T ss_pred EEEECC
T ss_conf 887244
No 299
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=35.76 E-value=28 Score=15.43 Aligned_cols=170 Identities=15% Similarity=0.081 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCC-CCCEEEEE-CCCCCCCHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 999999986189-98799997-58888888999999999998---41478679960332332232100011100013013
Q gi|254780747|r 53 LIERIERISRDD-SATALIVS-LSSPGGSAYAGEAIFRAIQK---VKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 (293)
Q Consensus 53 l~~~l~~a~~d~-~ik~ivL~-i~SpGG~~~~~~~i~~ai~~---~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s 127 (293)
+...++++.-|+ .|..|++= +. ++|.- ..+.+.+.- +..+-|.++ ++..|+||---+..+++.|-.....
T Consensus 35 i~~~l~r~~i~p~~Id~Vi~G~v~-~~~~~---~n~AR~aaL~aGlp~~vp~~T-Vnr~C~SGl~Ai~~Aa~~I~~G~~d 109 (426)
T PRK08170 35 GRALLNRQPFAPDDLDEVILGCAM-PSPDE---ANIGRVAALRLGCGEDVPGWT-VQRNCASGMQALDSAARNIALGRAD 109 (426)
T ss_pred HHHHHHHCCCCHHHCCEEEEEECC-CCCCC---CCHHHHHHHHCCCCCCCCEEE-ECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999749998999989999336-25666---779999999769998887267-7661237999999999998559988
Q ss_pred HHHHHHHH--HCCCHH-HHHHHHHHHCCEEEEE-CCCCCCCCCCCC--CCHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf 53455565--302102-4567774204225531-552112346667--89999887777766----66677899998514
Q gi|254780747|r 128 LVGSIGVL--FQYPYV-KPFLDKLGVSIKSVKS-SPMKAEPSPFSE--VNPKAVQMMQDVVD----SSYHWFVRLVSESR 197 (293)
Q Consensus 128 ~vGsiGv~--~~~~~~-~~ll~k~gi~~~~~~~-g~~K~~~~p~~~--~s~e~~~~~~~~l~----~~~~~f~~~Va~~R 197 (293)
++=.-|+- ...|+. .+-..+..-.+...+. ++.-.....|++ ..+.. .....+.| .....-.+.+++.-
T Consensus 110 vviAGGvEsMS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~gl~dp~~~~~Mg~tAE~~A~~~ 188 (426)
T PRK08170 110 LVLAGGTEALSRAPLLFSEKMVRWLAGWAAAKSAGAKLAALGKLRPSYLAPVI-GLLRGLTDPVVGLNMGQTAEVLAHRF 188 (426)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCH-HHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89993722045675124531001102322234602334332135732235300-01025657556664899999999997
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf 9998899887349823788998779806238
Q gi|254780747|r 198 NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 (293)
Q Consensus 198 ~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig 228 (293)
++++++.++++-...-.+.+|.+.|.-+++-
T Consensus 189 gisRe~qD~~A~~Sh~rA~~A~~~G~f~eiv 219 (426)
T PRK08170 189 GITREAMDAYAARSHQRLAAAQAEGRLKEVV 219 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9799999999997199999999809986687
No 300
>PRK06091 membrane protein FdrA; Validated
Probab=35.74 E-value=32 Score=15.03 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999998618998799997588888889999999999984147867996033
Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
..+..|+...+|+..+-|+|- .-|-. ..-.+.+.+.++. .+|||++.+-+
T Consensus 239 s~l~al~aL~~Dp~T~vIvlI-SKPPa-~eV~~kVl~~~~~--~~KPVV~~FLG 288 (555)
T PRK06091 239 SALTALEMLSADEKSEVLAFV-SKPPA-EAVRLKIINAMKA--TGKPVVALFLG 288 (555)
T ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCCC-HHHHHHHHHHHHH--CCCCEEEEEEC
T ss_conf 899999998559983299996-58997-8999999999984--29988999727
No 301
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=35.71 E-value=32 Score=15.02 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=22.0
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999861899879999758888888999999999998414786799603323322
Q gi|254780747|r 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 57 l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+-++..|+..|||||+=-..|+.+.....+-+.|+++-. +=|++.+..+|.+|
T Consensus 235 i~~~~~~~~YkGiViegtG~G~~P~~~R~~l~~~~ea~d-~GvVVV~ttQCl~G 287 (347)
T TIGR00519 235 IIRAYLSKGYKGIVIEGTGLGHVPQELRDILSKLQEAID-SGVVVVMTTQCLNG 287 (347)
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEEEEEECCC
T ss_conf 999862699348998204678883568899998776322-87168875443158
No 302
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=35.69 E-value=32 Score=15.02 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9999999998618998799997588888
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG 78 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG 78 (293)
+++++.|+++.+|++|.||++..-=|.+
T Consensus 73 ~~l~~~I~~lN~D~~V~GIlvqlPLP~~ 100 (117)
T pfam00763 73 EELLALIEKLNADPSVHGILVQLPLPKH 100 (117)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 9999999999678878879883889888
No 303
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=35.62 E-value=29 Score=15.31 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=36.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHH
Q ss_conf 0111000130135345556530210245677742042255315521123466---6789999887777
Q gi|254780747|r 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF---SEVNPKAVQMMQD 180 (293)
Q Consensus 116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~---~~~s~e~~~~~~~ 180 (293)
..||-|+.-|++.+-||+-+...+.+++.+.+ +..-|-+.||+ +..+-..-..+++
T Consensus 185 ~~AD~IVigPsnp~tSI~PiL~VpgireAL~~---------s~a~vVaVSPiigg~avkGPa~k~m~~ 243 (309)
T PRK13606 185 EDADVVVIGPSNPVTSIGPILAVPGIREALRE---------TGAPVVAVSPIIGGKPVSGPADKLMKA 243 (309)
T ss_pred HHCCCEEECCCCCEEEEEHHHCCHHHHHHHHH---------CCCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 83992898689750353113157269999985---------799889989776898888707999998
No 304
>TIGR01383 not_thiJ DJ-1 family protein; InterPro: IPR006287 These sequences represent the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by IPR006286 from INTERPRO, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras . Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ (thiamine pyridinylase), a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of Escherichia coli. The ThiJ designation for this family may be spurious; the cited paper refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. This group of proteins are classified as either DJ-1 putative peptidases or non-peptidase homologs in MEROPS peptidase family C56 (clan PC(C)). .
Probab=35.35 E-value=33 Score=14.99 Aligned_cols=65 Identities=17% Similarity=0.423 Sum_probs=40.9
Q ss_pred EEEEEEEEE---ECCHHHH---HH-HHHHHHCCCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 899997666---2386999---99-9999861899879999758888888-----9999999999984147867996033
Q gi|254780747|r 38 VARIAIRGQ---IEDSQEL---IE-RIERISRDDSATALIVSLSSPGGSA-----YAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 38 i~~i~i~G~---I~~~~~l---~~-~l~~a~~d~~ik~ivL~i~SpGG~~-----~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
++.+.++|. +..++.+ .+ .|+. -+++.-..|+| |||.+ ..|..+.+.|+++.++++++|.+
T Consensus 33 ~~~v~~~~~~l~V~gs~gv~~~AD~~l~d-~~~~~fD~ivL----PGG~pGa~nL~~S~~l~~~lk~~~~~gkl~AAI-- 105 (186)
T TIGR01383 33 VAIVGLNGSGLLVKGSRGVKILADASLED-VDDEEFDLIVL----PGGMPGAENLRDSKLLENLLKKQESKGKLVAAI-- 105 (186)
T ss_pred EEEEEECCCCCEEEEECCCEECCCCCHHH-CCCCCCCEEEE----CCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEE--
T ss_conf 99974258976046535627734871412-57777677893----698226664202578999999999749938842--
Q ss_pred CCCCC
Q ss_conf 23322
Q gi|254780747|r 106 MAASA 110 (293)
Q Consensus 106 ~~~S~ 110 (293)
||+-
T Consensus 106 -CAaP 109 (186)
T TIGR01383 106 -CAAP 109 (186)
T ss_pred -HHHH
T ss_conf -0458
No 305
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=35.26 E-value=33 Score=14.98 Aligned_cols=17 Identities=29% Similarity=0.639 Sum_probs=6.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 46667899998877777
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDV 181 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~ 181 (293)
||+..+.+..+..+..+
T Consensus 163 EPt~gLD~~~~~~i~~~ 179 (241)
T PRK10895 163 EPFAGVDPISVIDIKRI 179 (241)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 87547999999999999
No 306
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=35.25 E-value=33 Score=14.98 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred EEEEEEEECCHH----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC
Q ss_conf 999766623869----99999999861899879999758888888999999999998414-7867996033233223210
Q gi|254780747|r 40 RIAIRGQIEDSQ----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI 114 (293)
Q Consensus 40 ~i~i~G~I~~~~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i 114 (293)
.+..+|+|..+- -..-+++.-.++++ |.+-.=.- |+.. --..+++++-..- +-||+.++++.--.-+.-.
T Consensus 131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~---Va~~~~GD-Gat~-qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~ 205 (358)
T COG1071 131 FLGGSGIVGTQIPLAAGAALALKYRGTKDG---VAVAFFGD-GATN-QGDFHEALNFAAVWKLPVVFVIENNQYAISVPR 205 (358)
T ss_pred CCCCCCEECCCCCHHHHHHHHHHHHCCCCC---EEEEEECC-CCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEECCH
T ss_conf 578784046653479999999997489981---89999457-8655-333999989999856987999966871670456
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHCCCHH-------HHHHHHH--H-----HCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0-01110001301353455565302102-------4567774--2-----042255315521123466678999988777
Q gi|254780747|r 115 S-CASNIIVAAETSLVGSIGVLFQYPYV-------KPFLDKL--G-----VSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 (293)
Q Consensus 115 A-s~ad~I~a~p~s~vGsiGv~~~~~~~-------~~ll~k~--g-----i~~~~~~~g~~K~~~~p~~~~s~e~~~~~~ 179 (293)
+ .++.+++.....-.|--|+.....++ ++..++. | |+..+++-|.+...-.|.+--|+++.+.+.
T Consensus 206 ~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~ 285 (358)
T COG1071 206 SRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK 285 (358)
T ss_pred HHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 64033246775501058872787797799999999999999974899889999875358887779833367989998775
Q ss_pred HHHHHH
Q ss_conf 776666
Q gi|254780747|r 180 DVVDSS 185 (293)
Q Consensus 180 ~~l~~~ 185 (293)
. -|++
T Consensus 286 ~-~DPi 290 (358)
T COG1071 286 K-RDPI 290 (358)
T ss_pred C-CCHH
T ss_conf 0-6949
No 307
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=35.24 E-value=29 Score=15.31 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9879999758888-888999999999998414786799603323
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMA 107 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~ 107 (293)
+-.+|++ ||| |.+..+....+.|++++.++|+.-.+-+.-
T Consensus 45 ~pd~ivi---SPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQ 85 (191)
T COG0512 45 KPDAIVI---SPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQ 85 (191)
T ss_pred CCCEEEE---CCCCCCHHHCCHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 9998998---4899793773618999998608998899874378
No 308
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.87 E-value=33 Score=14.94 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=3.6
Q ss_pred CCCCCCHHHHH
Q ss_conf 66678999988
Q gi|254780747|r 166 PFSEVNPKAVQ 176 (293)
Q Consensus 166 p~~~~s~e~~~ 176 (293)
|+..+.+..++
T Consensus 164 Pt~gLD~~~~~ 174 (237)
T PRK11614 164 PSLGLAPIIIQ 174 (237)
T ss_pred CCCCCCHHHHH
T ss_conf 75579999999
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=34.74 E-value=33 Score=14.93 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88889999999999984
Q gi|254780747|r 77 GGSAYAGEAIFRAIQKV 93 (293)
Q Consensus 77 GG~~~~~~~i~~ai~~~ 93 (293)
|.++...+++.+.|.++
T Consensus 173 ~LD~~~~~~i~~~i~~l 189 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEF 189 (264)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 48999999999999999
No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.73 E-value=33 Score=14.93 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECC
Q ss_conf 99999998618998799997588888889999999999984-147867996033
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV-KNRKPVITEVHE 105 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~-k~~kpvva~~~~ 105 (293)
.+++|++|.++ +=++-||.-|-.-..+..+++++.+. +++||+++-++.
T Consensus 90 ~~~al~rA~~~----aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHr 139 (179)
T COG1618 90 AIPALRRALEE----ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHR 139 (179)
T ss_pred HHHHHHHHHHC----CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 68999988634----998999433633020088999999996589937999962
No 311
>PRK06460 hypothetical protein; Provisional
Probab=34.63 E-value=24 Score=15.88 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 54 IERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
.+.++++. +++.|.|+++- .+|...+.-.+.|.+.-++ +.+.+.+++..++.
T Consensus 120 ~~~~~~~~-~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~----~gi~~vVDNT~atP 172 (375)
T PRK06460 120 ENILEKIK-NKRYDVVFVETISNPLLRVIDIPELSKACKE----NGALLIVDSTFATP 172 (375)
T ss_pred HHHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHH----CCCEEEEECCCCCC
T ss_conf 99999734-7676089998899987640585899999987----49938975674141
No 312
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.41 E-value=30 Score=15.20 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+.++++- +++.+.|+++- .+|-..+.-...|.+.-+ + +.+.+.+++..++.
T Consensus 134 ~~~~~~i-~~~Tklv~~EsP~NPtl~v~DI~~i~~iA~---~-~g~~~vVDNT~atP 185 (424)
T PRK06084 134 AALEALI-DERTKAVFCESIGNPAGNIVDLQALADAAH---R-HGVPLIVDNTVATP 185 (424)
T ss_pred HHHHHHC-CCCCEEEEEECCCCCCCEECCHHHHHHHHH---H-CCCEEEEECCCCCC
T ss_conf 9999754-876518998438999865037899999998---7-49959954576352
No 313
>pfam00108 Thiolase_N Thiolase, N-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=34.29 E-value=34 Score=14.88 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=75.4
Q ss_pred HHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999998618-998799997588888889999999999984147----867996033233223210001110001301353
Q gi|254780747|r 55 ERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 (293)
Q Consensus 55 ~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v 129 (293)
..+++..-| +.|..|++=--.+.|.. ..+.+... +.++ -|-++ ++..|+||---+..++.+|-+....++
T Consensus 36 ~~l~r~~~~p~~Id~vi~G~~~~~g~~---~n~aR~~~-l~aGlp~~vp~~t-vnr~C~Sgl~Ai~~Aa~~I~~G~~dv~ 110 (264)
T pfam00108 36 AALERAGVKPEDVDEVIMGNVLQAGEG---QNPARQAA-LKAGIPDSVPAVT-INKVCGSGLKAVALAAQAIRAGDADIV 110 (264)
T ss_pred HHHHHCCCCHHHCCEEEEECCCCCCCC---CHHHHHHH-HHCCCCCCCCEEE-EECHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 999985999688356888436656776---62999999-9769998886689-823201799999999999837987667
Q ss_pred HHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 455565--3021024567774204225531552112346667-8999988777776666677899998514999889988
Q gi|254780747|r 130 GSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE-VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 (293)
Q Consensus 130 GsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~-~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~ 206 (293)
-.-|+- ...|....- .....+.|+.+.....+.+ +.+.. ......+--+.+++..++++++.++
T Consensus 111 iagGvEsmS~~P~~~~~------~~~~~~~g~~~~~~~~~~~~~~d~~-------~~~~Mg~tAE~~A~~~gisRe~qD~ 177 (264)
T pfam00108 111 VAGGVESMSNAPYVLPA------SRVGARMGDAKLVDTMLKDGLTDAF-------NLIHMGITAENVAKKYGISREEQDE 177 (264)
T ss_pred EEECCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 87221356545201455------4445676765545322365431100-------4751878899987750899999999
Q ss_pred HHCCCCCCHHHHHHCCCCCC
Q ss_conf 73498237889987798062
Q gi|254780747|r 207 LSDGRIWTGAEAKKVGLIDV 226 (293)
Q Consensus 207 ~~~g~~~~~~~A~~~GLvD~ 226 (293)
++-...-.+.+|.+.|.-++
T Consensus 178 ~A~~Sh~rA~~A~~~G~f~~ 197 (264)
T pfam00108 178 FALRSQQKAAAAQKAGKFKD 197 (264)
T ss_pred HHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999998396243
No 314
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395 These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. .
Probab=34.06 E-value=34 Score=14.86 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=36.1
Q ss_pred EEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--------CCCCCCCCCCCCCCCHH
Q ss_conf 9999758888-88899999999999841478679960332332--------23210001110001301
Q gi|254780747|r 68 ALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS--------AGYLISCASNIIVAAET 126 (293)
Q Consensus 68 ~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S--------~~Y~iAs~ad~I~a~p~ 126 (293)
+-++.|-||- |+ ..++.+|+...|. -.+=||+++.|.- ..--+|+.|+.+.|-|+
T Consensus 327 ~h~VQiKTPDvGg---~~~~arA~~yCk~-n~~gAYvGGtCnET~~SA~~~~hv~~At~A~~vLAKPG 390 (414)
T TIGR01502 327 AHLVQIKTPDVGG---VADIARAVLYCKA-NDVGAYVGGTCNETDLSARASVHVALATDADQVLAKPG 390 (414)
T ss_pred CCEEEEECCCCCC---HHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_conf 2357762487456---5569999987403-88202256756632344666534554423466522899
No 315
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=33.96 E-value=34 Score=14.85 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |++..+....+.++.+..+.|+.-.+-+.
T Consensus 43 ~pd~IiL---SpGPg~p~~~~~~~~~~~~~~~~iPILGIClG~ 82 (195)
T PRK07649 43 KPDFLMI---SPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGH 82 (195)
T ss_pred CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf 9898998---899999578476146799752899784302999
No 316
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=33.84 E-value=34 Score=14.84 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=50.3
Q ss_pred CEEEEECCC--------CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 799997588--------88888999999999998414-786799603323322321000-11100013013534555653
Q gi|254780747|r 67 TALIVSLSS--------PGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISC-ASNIIVAAETSLVGSIGVLF 136 (293)
Q Consensus 67 k~ivL~i~S--------pGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs-~ad~I~a~p~s~vGsiGv~~ 136 (293)
|-||+.+.+ -|-.......+++.|.+++. ++.|+..+++.....|+..+. ..++ .+...+|..+..+
T Consensus 1 kRIViKiGGs~L~~~~~~~ld~~~I~~la~~I~~l~~~G~eVviVvggG~i~rg~~~~~~~~~~---~~~d~~g~lat~~ 77 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDR---ATADYMGMLATVI 77 (231)
T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHCCCCC---CHHHHHHHHHHHH
T ss_conf 9599995166607899988599999999999999997798699998177301242245346663---5188999999999
Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 021024567774204225531552112346
Q gi|254780747|r 137 QYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 137 ~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
+..-.+..|.+.|++...++.-+.....++
T Consensus 78 n~~ll~~al~~~g~~~~~~t~~~~~~~~~~ 107 (231)
T cd04254 78 NALALQDALESLGVKTRVMSAIPMQGVAEP 107 (231)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 999999999867998799742234422231
No 317
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=33.52 E-value=35 Score=14.80 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=6.0
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 4666789999887777
Q gi|254780747|r 165 SPFSEVNPKAVQMMQD 180 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~ 180 (293)
||+..+.++..+.+..
T Consensus 164 EpTs~LD~~te~~i~~ 179 (275)
T cd03289 164 EPSAHLDPITYQVIRK 179 (275)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 9766899999999999
No 318
>PRK13238 tnaA tryptophanase; Provisional
Probab=33.02 E-value=36 Score=14.75 Aligned_cols=120 Identities=14% Similarity=0.261 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC-------------
Q ss_conf 99999999986189987999975--8888888999999999998414-7867996033233223210-------------
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI------------- 114 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i------------- 114 (293)
+.+-+.|+.-. -++|.-|++.| ||.||.+...+.|++.=+-.++ +.|++--..-+|- -+|+|
T Consensus 164 ~kLe~~i~~~g-~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~~ip~~lDaaRfaE-NAyFIk~RE~gY~d~si~ 241 (461)
T PRK13238 164 EKLEALIEEVG-ADNIPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVLDAARFAE-NAYFIKQREPGYKDKSIK 241 (461)
T ss_pred HHHHHHHHHHC-CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHH-HHHHHHHCCCCCCCCCHH
T ss_conf 99999998738-4465489999862687881646899999999999829959986566766-457887325312579999
Q ss_pred ------CCCCCCCCCCH--HHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ------00111000130--135345556530210245677742042255315521123466678999988777
Q gi|254780747|r 115 ------SCASNIIVAAE--TSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQ 179 (293)
Q Consensus 115 ------As~ad~I~a~p--~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~ 179 (293)
.+.||-++|+- .++ ..||-....-+-.+++++.... .+-.--| -.|-.|+-.+.+.+.
T Consensus 242 eI~rEmfs~aDg~tmSaKKD~~-vniGG~l~~~d~~~l~~~~~~~--~i~~EGf----~TYGGlaGRDmeAlA 307 (461)
T PRK13238 242 EITREMFSYADGLTMSAKKDAM-VNIGGLLCFKDDSDLYTKCRTL--CILYEGF----PTYGGLAGRDMEALA 307 (461)
T ss_pred HHHHHHHHHHHEEEEEECCCCE-ECCCCEEEECCHHHHHHHHHHH--EEECCCC----CCCCCCCHHHHHHHH
T ss_conf 9999998452379998330121-0442289966759999998744--2420587----566883387799997
No 319
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=36 Score=14.71 Aligned_cols=89 Identities=21% Similarity=0.386 Sum_probs=51.7
Q ss_pred CCEEEEECCCCCCCHH---------HHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH----
Q ss_conf 8799997588888889---------9999999999841478--679960332332232100011100013013534----
Q gi|254780747|r 66 ATALIVSLSSPGGSAY---------AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG---- 130 (293)
Q Consensus 66 ik~ivL~i~SpGG~~~---------~~~~i~~ai~~~k~~k--pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG---- 130 (293)
-.-|++.++.-||... .++.++++|.++.++| --+-++-+.|..-+.|--++.-.+.+--+|.+|
T Consensus 138 ~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ysPNvLavgsSeig~ssy 217 (382)
T COG5206 138 SSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSPNVLAVGSSEIGQSSY 217 (382)
T ss_pred CCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 67679998267873002326587762677899999998763224289996303321344312488668984052687543
Q ss_pred ------HHHH--HHCCC-HHHHHHHHHHHCCEE
Q ss_conf ------5556--53021-024567774204225
Q gi|254780747|r 131 ------SIGV--LFQYP-YVKPFLDKLGVSIKS 154 (293)
Q Consensus 131 ------siGv--~~~~~-~~~~ll~k~gi~~~~ 154 (293)
.||+ +-..+ ++-+.++|++++...
T Consensus 218 Shhsd~~IgvaVIDrFty~~l~fle~id~~skl 250 (382)
T COG5206 218 SHHSDSLIGVAVIDRFTYFFLKFLEKIDIGSKL 250 (382)
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
T ss_conf 334222665777612207999998534767726
No 320
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.38 E-value=36 Score=14.69 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 86999999999861899879999758888888999999999998414786799603323322321000111000130135
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
+++++++.|+++.+|++|.||++.+-=|.+- ..+++.++|.- .|-|=.+-. .+-|++ +. .+..+.+.+.
T Consensus 75 s~~el~~~I~~LN~d~~V~GIiVQlPLP~~i--d~~~i~~~I~p---~KDVDGl~~---~N~G~L-~~-~~~~~~PcTp- 143 (288)
T PRK10792 75 SEAELLALIDTLNADNTIDGILVQLPLPAGI--DNVKVLERIHP---DKDVDGFHP---YNVGRL-CQ-RAPRLRPCTP- 143 (288)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CHHHHHHHCCC---CCCCCCCCH---HHHHHH-CC-CCCCCCCCCH-
T ss_conf 9999999999996799878637836899885--77999851498---889887998---899877-06-9986678719-
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCC---EEEEECCCCCCCCCC
Q ss_conf 345556530210245677742042---255315521123466
Q gi|254780747|r 129 VGSIGVLFQYPYVKPFLDKLGVSI---KSVKSSPMKAEPSPF 167 (293)
Q Consensus 129 vGsiGv~~~~~~~~~ll~k~gi~~---~~~~~g~~K~~~~p~ 167 (293)
...-++|+++|++. +++-.|.-.--+-|.
T Consensus 144 ----------~av~~lL~~y~i~~~Gk~vvVvGrS~iVGkPl 175 (288)
T PRK10792 144 ----------RGIVTLLERYNIDTFGLNAVVIGASNIVGRPM 175 (288)
T ss_pred ----------HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH
T ss_conf ----------99999999747563788899956766343899
No 321
>PRK02628 nadE NAD synthetase; Reviewed
Probab=32.30 E-value=37 Score=14.68 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCCCC-CCCCC-CCCCCCCCHHHHHHHHHHHH--------CCCHHHHHHHHHHHCCEEEEECC-----CC
Q ss_conf 867996033233223-21000-11100013013534555653--------02102456777420422553155-----21
Q gi|254780747|r 97 KPVITEVHEMAASAG-YLISC-ASNIIVAAETSLVGSIGVLF--------QYPYVKPFLDKLGVSIKSVKSSP-----MK 161 (293)
Q Consensus 97 kpvva~~~~~~~S~~-Y~iAs-~ad~I~a~p~s~vGsiGv~~--------~~~~~~~ll~k~gi~~~~~~~g~-----~K 161 (293)
++++.-..+..-|+- .++++ +.|..=.++..+ +|+.| ..-+.+.|.+.+||+.+.+-..+ ++
T Consensus 363 ~~vViGLSGGiDSaLaLLVaa~A~d~Lg~~r~~V---~~vtMPs~~TS~~S~~dA~~La~~LGi~~~~I~I~~a~~~~~~ 439 (678)
T PRK02628 363 KKVVIGISGGLDSTLALLVAAKAFDRLGLPRKNI---LAYTMPGFGTTDRTKNNAVALMKALGVTAREIDIRPAALQMLK 439 (678)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCE---EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH
T ss_conf 8189967776447999999999999848971224---8997788765787899999999972997799762999999999
Q ss_pred CCCCCC
Q ss_conf 123466
Q gi|254780747|r 162 AEPSPF 167 (293)
Q Consensus 162 ~~~~p~ 167 (293)
+.+.||
T Consensus 440 di~~~~ 445 (678)
T PRK02628 440 DIGHPF 445 (678)
T ss_pred HHCCHH
T ss_conf 844422
No 322
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=32.27 E-value=30 Score=15.23 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322321--000111000
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNIIV 122 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I~ 122 (293)
+.++++-+ ++.|.|++.- .+|-..+.-...|.+.-+ +. .+.+.+++..++.-+. +...+|=++
T Consensus 128 ~~~~~~i~-~~Tklv~~EspsNP~l~v~Di~~i~~~a~---~~-g~~~vvDNT~atP~~~~Pl~~GaDivv 193 (386)
T PRK08045 128 QALRAALA-EKPKLVLVESPSNPLLRVVDIAKICHLAR---EA-GAVSVVDNTFLSPALQNPLALGADLVL 193 (386)
T ss_pred HHHHHHCC-CCCEEEEEECCCCCCCEECCCHHHHHHHH---HC-CCEEEEECCCCCHHCCCCCCCCCCEEE
T ss_conf 99997537-78559999779998761057699999999---76-998998275232311273003887899
No 323
>PRK11096 ansB L-asparaginase II; Provisional
Probab=32.25 E-value=37 Score=14.67 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCCCCCCCEEEEEEEEEEECC----------------HHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCHHHHHHHHHHHH
Q ss_conf 555677872899997666238----------------6999999999861899879999-75888888899999999999
Q gi|254780747|r 29 SHVEDNSPHVARIAIRGQIED----------------SQELIERIERISRDDSATALIV-SLSSPGGSAYAGEAIFRAIQ 91 (293)
Q Consensus 29 ~~~~~~~~~i~~i~i~G~I~~----------------~~~l~~~l~~a~~d~~ik~ivL-~i~SpGG~~~~~~~i~~ai~ 91 (293)
.......|+|++|.--|+|.+ .+++++.+-...+--++...-+ .|+|.--++..-.+|++.|.
T Consensus 16 ~g~~~~lP~I~ii~TGGTIA~~~~~~t~~~y~ag~l~~~~Ll~~vP~l~~~a~i~~~q~~nidS~~mtp~~w~~La~~I~ 95 (347)
T PRK11096 16 SGAAFALPNITILATGGTIAGGGDSATKSNYTAGKVGVDNLVNAVPQLKDIANVKGEQVVNIGSQDMNDEVWLTLAKKIN 95 (347)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 23346798079994787221354677778755787799999985830202032899983467954389999999999999
Q ss_pred HH
Q ss_conf 84
Q gi|254780747|r 92 KV 93 (293)
Q Consensus 92 ~~ 93 (293)
+.
T Consensus 96 ~~ 97 (347)
T PRK11096 96 TD 97 (347)
T ss_pred HH
T ss_conf 86
No 324
>TIGR02922 TIGR02922 conserved hypothetical protein TIGR02922; InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO..
Probab=31.84 E-value=22 Score=16.10 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=21.0
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 98414786799603323322321000111000
Q gi|254780747|r 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 91 ~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
++||++|-++|.+++.+ -.|-+-+|+|+
T Consensus 41 ~eFk~GKsIiAV~EG~i----~ilNsvGdr~~ 68 (69)
T TIGR02922 41 QEFKKGKSIIAVCEGEI----TILNSVGDRVL 68 (69)
T ss_pred CCCCCCCEEEEEECCCE----EEECCCCCEEC
T ss_conf 75668986899824866----88503551605
No 325
>PRK01059 ATP:guanido phosphotransferase; Provisional
Probab=31.49 E-value=38 Score=14.59 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8888889999999999984147867996033233223210001110-------001301353455565302102456777
Q gi|254780747|r 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI-------IVAAETSLVGSIGVLFQYPYVKPFLDK 147 (293)
Q Consensus 75 SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~-------I~a~p~s~vGsiGv~~~~~~~~~ll~k 147 (293)
.+|+....+-+....+.+.=.++--+||-.. =||+-+|+.+- ++++--+.+ ...+...+-..+.|
T Consensus 127 ~~G~~L~~a~~~~~~id~~le~~l~fAfd~~----~GYLTsCPTNlGTGlRASVmlHLPaL~----~t~~i~~i~~~~~~ 198 (351)
T PRK01059 127 DPGLQLEEALEQANQIDDLLEEKLDYAFDEK----LGYLTSCPTNVGTGLRASVMLHLPALV----LTKRINRILQAINQ 198 (351)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC----CCEECCCCCCCCCCEEEEEEEECHHHH----HHHHHHHHHHHHHH
T ss_conf 5888999999999999999970378505588----631123887665353899998546778----77579999999875
Q ss_pred HHHCCEEEEECCCCCCCCCCC-------CCCHHH
Q ss_conf 420422553155211234666-------789999
Q gi|254780747|r 148 LGVSIKSVKSSPMKAEPSPFS-------EVNPKA 174 (293)
Q Consensus 148 ~gi~~~~~~~g~~K~~~~p~~-------~~s~e~ 174 (293)
+|+.++.+.-..-+..++.|+ .+||++
T Consensus 199 ~Gl~vrglyGegsea~GniyqISNq~TLG~sEee 232 (351)
T PRK01059 199 LGLTVRGIYGEGSEALGNIYQISNQITLGKSEEE 232 (351)
T ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHH
T ss_conf 7868862247886555657898504436899999
No 326
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=31.48 E-value=38 Score=14.59 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHH----HHCCCCCCHHHHHH--CCCCCCCCCHHHHHHHHHH
Q ss_conf 78999988777776666677899998514999889---988----73498237889987--7980623898999999997
Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK---TLV----LSDGRIWTGAEAKK--VGLIDVVGGQEEVWQSLYA 239 (293)
Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~---~~~----~~~g~~~~~~~A~~--~GLvD~ig~~~~a~~~l~~ 239 (293)
+=+|.--|.+..-...++.+.+.....-.+++..= +++ ++|. +.|-+..++ .|++++|---.+-.++++.
T Consensus 282 KKNPD~aELiRGK~Grv~G~L~g~L~~lKalP~aYNrDlQEdkE~LFD~-v~t~~~~~~~~~~~l~~i~vn~er~~e~A~ 360 (469)
T TIGR00838 282 KKNPDVAELIRGKTGRVIGNLTGLLTILKALPLAYNRDLQEDKEPLFDA-VKTVELSLEVMTGMLDTIKVNKERMEEAAS 360 (469)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 7772079999875526899999999997112332351001378367889-999999999999998308158789999864
Q ss_pred HCCCCCCCCEEECCCCC-CHHHHHHHH
Q ss_conf 41877653012014421-124556511
Q gi|254780747|r 240 LGVDQSIRKIKDWNPPK-NYWFCDLKN 265 (293)
Q Consensus 240 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 265 (293)
. +....+.+.+|--++ +-.|+....
T Consensus 361 ~-~f~~ATdLADyLV~k~GVPFR~AH~ 386 (469)
T TIGR00838 361 A-GFSNATDLADYLVRKRGVPFREAHH 386 (469)
T ss_pred C-CCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 4-8870788999998347998067789
No 327
>pfam01990 ATP-synt_F ATP synthase (F/14-kDa) subunit. This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F.
Probab=31.37 E-value=38 Score=14.58 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 8699999999986189987999975888888899999999999841478679960332332
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAAS 109 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S 109 (293)
+.+++.+.+++..+|+++ ||++--+ .-++.+.+.+.++++..|++.-+.+.-.+
T Consensus 25 ~~~e~~~~l~~l~~~~d~-gII~ite------~~a~~i~~~i~~~~~~~P~Ii~IP~~~g~ 78 (92)
T pfam01990 25 SPEEAEEAFEKLLEREDI-GIILITE------DIAEEIRETIDRYESVLPAILEIPSKDGP 78 (92)
T ss_pred CHHHHHHHHHHHHCCCCE-EEEEECH------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 989999999998548985-9999748------99998899999847688879996899999
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=31.24 E-value=38 Score=14.57 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf 69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL 128 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~ 128 (293)
.++.+.-....+.++++ ++|+=-+.|-++...+++.+.|+++++.+..+.++.+.. ..+...||+|.. ..+-+
T Consensus 146 ~kQrv~iA~aL~~~p~l--liLDEPt~~Ld~~~~~~l~~~l~~l~~~g~til~isH~l----~~~~~~~drv~vl~~G~i 219 (501)
T PRK10762 146 DQQMVEIAKVLSFESKV--IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRM----KEIFEICDDVTVLRDGQF 219 (501)
T ss_pred HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHCCCCCEEECCCEE
T ss_conf 99999999998459987--753587557887888999998878774484147751425----766421464113127818
No 329
>KOG1349 consensus
Probab=31.22 E-value=38 Score=14.57 Aligned_cols=68 Identities=24% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 18998799997588888889---------9999999999841478--679960332332232100011100013013534
Q gi|254780747|r 62 RDDSATALIVSLSSPGGSAY---------AGEAIFRAIQKVKNRK--PVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 (293)
Q Consensus 62 ~d~~ik~ivL~i~SpGG~~~---------~~~~i~~ai~~~k~~k--pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG 130 (293)
.|++ .-|+++++.-||... .+++++++|+...+++ .-+-++-+.|..+..|=-...--|.+-.+|.+|
T Consensus 135 tDe~-SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~~g 213 (309)
T KOG1349 135 TDEG-SNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSLVG 213 (309)
T ss_pred CCCC-CCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCEEEEEECCCC
T ss_conf 3677-767999816787520332668876467889999999986323248998321106778875138975897412258
No 330
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=31.15 E-value=38 Score=14.56 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8728999976662386999999999861899879999758888888999999999998414786799603
Q gi|254780747|r 35 SPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH 104 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~ 104 (293)
.|-|+|+++.|.-.+.-.++..+.....|.+|+|||+.= .+|. ...+-+.++|.+ .+.||+-++.
T Consensus 115 ~PViLViD~~~~~~s~aa~v~G~~~~~~~~~I~GvIlNk--~~g~-~h~~ll~~~ie~--~gvpvlG~lP 179 (451)
T PRK01077 115 APVVLVVDASGMAQSAAALVLGFARFDPDLNIAGVILNR--VGSE-RHYQLLREALEE--LGLPVLGALP 179 (451)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCCH-HHHHHHHHHHHH--CCCCEEEEEC
T ss_conf 988999846620899999999999759778774899624--7876-689999999986--3995798615
No 331
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase; InterPro: IPR011780 This family consists of D-serine ammonia-lyases, pyridoxal-phosphate enzymes that convert D-serine to pyruvate and NH3. These enzyme are also called D-serine dehydratase and D-serine deaminase and was previously designated 4.2.1.14 from EC. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.; GO: 0008721 D-serine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0046416 D-amino acid metabolic process.
Probab=30.91 E-value=39 Score=14.53 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 869999999998618998799997588---888889999999999984---14786799603323322321000111000
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSS---PGGSAYAGEAIFRAIQKV---KNRKPVITEVHEMAASAGYLISCASNIIV 122 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~~---k~~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293)
+-..+-..|++..+.+=.--++|..|| -.||.=+--=||+-|+.. +=..=.+.--+||.- +.-.-+...|
T Consensus 75 ev~~m~~~Le~~Y~~~~~G~l~LK~DshLPisGSIKARGGiYEVL~hAE~LAle~GLl~l~DDYs~----L~~~~f~~FF 150 (431)
T TIGR02035 75 EVAAMQKKLEKKYQQEIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLKLDDDYSI----LAEKKFKDFF 150 (431)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHH----HCCHHHHHHH
T ss_conf 999999999997437877630020476788443110465077899999999987076655631656----3045553113
Q ss_pred C------CHHHHHH-HHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHH
Q ss_conf 1------3013534-555653021024567774204225531552112346667899998877777666-------6677
Q gi|254780747|r 123 A------AETSLVG-SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS-------SYHW 188 (293)
Q Consensus 123 a------~p~s~vG-siGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~-------~~~~ 188 (293)
+ -.++..| |||.+.....|+ +.+ +||...|++-+.+|.. +-..
T Consensus 151 s~Y~IaVGSTGNLGLSIGI~~AalGF~-------v~V----------------HMSADAk~WKKd~LR~~GVtV~EYe~D 207 (431)
T TIGR02035 151 SRYSIAVGSTGNLGLSIGIISAALGFQ-------VTV----------------HMSADAKQWKKDKLRSKGVTVVEYESD 207 (431)
T ss_pred HHEEEEECCCCHHHHHHHHHHHHCCCE-------EEE----------------EECHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf 010232115540046799997520174-------898----------------604656677899887369679985030
Q ss_pred HHHHHHHCCC
Q ss_conf 8999985149
Q gi|254780747|r 189 FVRLVSESRN 198 (293)
Q Consensus 189 f~~~Va~~R~ 198 (293)
|=..|.++|+
T Consensus 208 Y~~AVeeGR~ 217 (431)
T TIGR02035 208 YSVAVEEGRK 217 (431)
T ss_pred HHHHHHHHHH
T ss_conf 4588887656
No 332
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=30.81 E-value=39 Score=14.52 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCC
Q ss_conf 999986189987999975-8888888999999999998414786799603323322321--00011100
Q gi|254780747|r 56 RIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL--ISCASNII 121 (293)
Q Consensus 56 ~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~--iAs~ad~I 121 (293)
.++++- +++.|.|+++- .+|...+.-...|.+.-++ +.+.+.+++..++.-+. +.-.||=+
T Consensus 137 ~~~~~i-~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~----~g~~~vVDNTfatP~~~~Pl~~GaDiv 200 (405)
T PRK08776 137 SLADAL-AQSPKLVLIETPSNPLLRITDLRFVIEAAHK----VGALTVVDNTFLSPALQKPLEFGADLV 200 (405)
T ss_pred HHHHHC-CCCCEEEEEECCCCCCCEEECCHHHHHHHHH----CCCEEEEECCCCCCCCCCHHHHCCCEE
T ss_conf 999743-7776599998899998860275999999987----399799979976400268265279789
No 333
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=30.67 E-value=39 Score=14.51 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=9.6
Q ss_pred EEEEEEEEEECCHHHHH
Q ss_conf 89999766623869999
Q gi|254780747|r 38 VARIAIRGQIEDSQELI 54 (293)
Q Consensus 38 i~~i~i~G~I~~~~~l~ 54 (293)
+-..+.+|+|+..+...
T Consensus 4 ~if~DFDGTIT~~D~~~ 20 (219)
T PRK09552 4 QVFCDFDGTITNNDNII 20 (219)
T ss_pred EEEECCCCCCCCHHHHH
T ss_conf 89944898877206389
No 334
>KOG2245 consensus
Probab=30.45 E-value=39 Score=14.48 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899998877777666667789999851
Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293)
Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293)
-++|+.-.+..+++.-..+.+..+.++
T Consensus 377 ~~~ed~l~w~G~vESriR~Lv~klE~~ 403 (562)
T KOG2245 377 ATEEDLLKWVGWVESRIRQLVLKLERN 403 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 686887655358999999999998762
No 335
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=30.01 E-value=40 Score=14.44 Aligned_cols=18 Identities=28% Similarity=0.100 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 989999999974187765
Q gi|254780747|r 229 GQEEVWQSLYALGVDQSI 246 (293)
Q Consensus 229 ~~~~a~~~l~~~~~~~~~ 246 (293)
+..+-+.-+..+...++.
T Consensus 157 G~rqrv~ia~aL~~~P~l 174 (236)
T cd03267 157 GQRMRAEIAAALLHEPEI 174 (236)
T ss_pred HHHHHHHHHHHHHCCCCE
T ss_conf 999999999999679999
No 336
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=29.81 E-value=40 Score=14.42 Aligned_cols=155 Identities=17% Similarity=0.058 Sum_probs=71.2
Q ss_pred HHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999998618-998799997588888889999999999984147----867996033233223210001110001301353
Q gi|254780747|r 55 ERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 (293)
Q Consensus 55 ~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v 129 (293)
..++++.-| +.|..|++=--.+.|. +...+.+... ++++ -|-++ ++..|+||---+..+++.|-+-...++
T Consensus 39 ~~l~r~gi~p~~ID~Vi~G~v~~~g~--~g~n~aR~aa-L~AGlp~~vpa~T-Vnr~C~SGl~Ai~~aa~~I~~G~~dvv 114 (417)
T PRK06025 39 ALAERNGLNTADVDDIIWSTSSQRGK--QGGDLGRMAA-LDAGYDIKASGVT-LDRFCGGGITSVNLAAAQIMSGMEDLV 114 (417)
T ss_pred HHHHHHCCCHHHCCEEEEEECCCCCC--CCCCHHHHHH-HHCCCCCCCCEEE-ECCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99987098979989899980777654--3465999999-9679998886078-757464089999999999976999867
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 45556530--2102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r 130 GSIGVLFQ--YPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 (293)
Q Consensus 130 GsiGv~~~--~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~ 207 (293)
=.-|+-.. .+.+...-...+........+ ...+.+..-+ .....--+.+++..++++++.+++
T Consensus 115 iAGGvEsmS~~p~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~-------~~mg~tAE~~A~~~gIsRe~qD~~ 179 (417)
T PRK06025 115 IAGGTEMMSYTAAMAAEEMAAGKPPLGMGSG--------NLRLRALHPQ-------SHQGVCGDAIATMEGITREALDAL 179 (417)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--------CCCHHHCCCC-------CCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8953423676630024100246885434466--------6202322798-------741688999999869799999999
Q ss_pred HCCCCCCHHHHHHCCCCC-CCC
Q ss_conf 349823788998779806-238
Q gi|254780747|r 208 SDGRIWTGAEAKKVGLID-VVG 228 (293)
Q Consensus 208 ~~g~~~~~~~A~~~GLvD-~ig 228 (293)
+-...-.+.+|.+.|+-+ +|.
T Consensus 180 A~~Sh~rA~~A~~~G~f~~EIv 201 (417)
T PRK06025 180 GLESQRRAARAIKEGRFDKSLV 201 (417)
T ss_pred HHHHHHHHHHHHHCCCCHHHEE
T ss_conf 9999999999998399622111
No 337
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=29.51 E-value=41 Score=14.38 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 88999999999998414786799603323322321------------000111000130135345556530210245677
Q gi|254780747|r 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL------------ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLD 146 (293)
Q Consensus 79 ~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~------------iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~ 146 (293)
.+.-.+-+++++++.-..-..+.+.+++-.=-..+ |-.+=.+| =.|.+.-.|.+--... -|.+.|+
T Consensus 40 Ev~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~I-PdP~g~~~Sya~h~~~-~~~~~L~ 117 (355)
T pfam01921 40 EVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRI-PDPFGCHESYAEHFNA-PFLEFLD 117 (355)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEC-CCCCCCCCCHHHHHHH-HHHHHHH
T ss_conf 1799999999999749876999982156510137889999899987369752134-7988874559999999-9999999
Q ss_pred HHHHCCEEEEE
Q ss_conf 74204225531
Q gi|254780747|r 147 KLGVSIKSVKS 157 (293)
Q Consensus 147 k~gi~~~~~~~ 157 (293)
++||+++.+++
T Consensus 118 ~~gi~~ef~s~ 128 (355)
T pfam01921 118 RFGIEYEFISA 128 (355)
T ss_pred HCCCEEEEEEH
T ss_conf 83982899867
No 338
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=29.47 E-value=41 Score=14.38 Aligned_cols=63 Identities=19% Similarity=0.462 Sum_probs=39.9
Q ss_pred EEEEEEEEEEECCHHHHHHHHHHH-----------HCCCCCCEEEEECCCCCCCHHHHHH------HHHHHHHHC-CCCC
Q ss_conf 289999766623869999999998-----------6189987999975888888899999------999999841-4786
Q gi|254780747|r 37 HVARIAIRGQIEDSQELIERIERI-----------SRDDSATALIVSLSSPGGSAYAGEA------IFRAIQKVK-NRKP 98 (293)
Q Consensus 37 ~i~~i~i~G~I~~~~~l~~~l~~a-----------~~d~~ik~ivL~i~SpGG~~~~~~~------i~~ai~~~k-~~kp 98 (293)
+|.++.+.|...+- ++.++++ .+-+.+.|+++ |||..+.... +.+.|+++. +++|
T Consensus 2 ~IGVLalQG~v~EH---~~~l~~~~~~e~~~Vk~~~dL~~~d~LIi----PGGESTTi~rL~~~~gl~e~l~~~~~~G~P 74 (194)
T COG0311 2 KIGVLALQGAVEEH---LEALEKAGGAEVVEVKRPEDLEGVDGLII----PGGESTTIGRLLKRYGLLEPLREFIADGLP 74 (194)
T ss_pred EEEEEEECCCHHHH---HHHHHHHCCCCEEEECCHHHHCCCCEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 47999850468999---99998605873599717788553767895----495078999999873848999999976996
Q ss_pred EEEEECCC
Q ss_conf 79960332
Q gi|254780747|r 99 VITEVHEM 106 (293)
Q Consensus 99 vva~~~~~ 106 (293)
++.-|.++
T Consensus 75 v~GTCAGl 82 (194)
T COG0311 75 VFGTCAGL 82 (194)
T ss_pred EEEECHHH
T ss_conf 47751425
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.25 E-value=41 Score=14.36 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999986189987999975888888899999999999841478679960
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293)
++.+.-.+....++.+ ++|+=-+-|-++...+++.+.|+++++++..+..+
T Consensus 86 kqrv~iA~al~~~p~i--lilDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~v 136 (157)
T cd00267 86 RQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136 (157)
T ss_pred HHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999709999--99969876689999999999999999689999999
No 340
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=29.12 E-value=41 Score=14.34 Aligned_cols=146 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCC
Q ss_conf 9976662386999999999861899879999758888888999999999998414786799603323322321---0001
Q gi|254780747|r 41 IAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL---ISCA 117 (293)
Q Consensus 41 i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~---iAs~ 117 (293)
+++-|.-.+..+.++.+.+. +..-++++++-||-.....-++.+.|++..-..+|+++.... +..|. +.+.
T Consensus 29 ~~vvg~a~~~~~~~~~~~~~----~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~vivls~~~--~~~~v~~al~~G 102 (216)
T PRK10840 29 VNVVGEFEDSTALINNLPKL----DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNN--NPAILSAVLDLD 102 (216)
T ss_pred CEEEEEECCHHHHHHHHHHC----CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCC--CHHHHHHHHHCC
T ss_conf 68999879999999998623----989899826779998878999999999858998089984778--789999998589
Q ss_pred CCCCCC---CHHHHHHHHHHHHCC-CHH----HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 110001---301353455565302-102----456777420422553155211234666789999887777766666778
Q gi|254780747|r 118 SNIIVA---AETSLVGSIGVLFQY-PYV----KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWF 189 (293)
Q Consensus 118 ad~I~a---~p~s~vGsiGv~~~~-~~~----~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f 189 (293)
++-.+. ++..++-.|-.+... .++ ..++++. ..+++ .-.++|+.++|.++-+.++.-
T Consensus 103 a~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~~~~l~~~-------~~~~~-----~~~~LT~RE~eVL~lla~G~s--- 167 (216)
T PRK10840 103 IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKI-------SAGGY-----GDKRLSPKESEVLRLFAEGFL--- 167 (216)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-------CCCCC-----CCCCCCHHHHHHHHHHHCCCC---
T ss_conf 748998789999999999999879943969999999972-------05888-----778999899999999986999---
Q ss_pred HHHHHHCCCCCHHHHHHH
Q ss_conf 999985149998899887
Q gi|254780747|r 190 VRLVSESRNIPYDKTLVL 207 (293)
Q Consensus 190 ~~~Va~~R~~~~~~~~~~ 207 (293)
...||+.-+++..+++..
T Consensus 168 nkeIA~~L~iS~~TV~~h 185 (216)
T PRK10840 168 VTEIAKKLNRSIKTISSQ 185 (216)
T ss_pred HHHHHHHHCCCHHHHHHH
T ss_conf 999998969899999999
No 341
>pfam02065 Melibiase Melibiase.
Probab=28.97 E-value=42 Score=14.32 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=53.5
Q ss_pred EEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC-------CCCC----HHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9999766623869999999998618998799997588-------8888----8999999999998414786799603323
Q gi|254780747|r 39 ARIAIRGQIEDSQELIERIERISRDDSATALIVSLSS-------PGGS----AYAGEAIFRAIQKVKNRKPVITEVHEMA 107 (293)
Q Consensus 39 ~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~S-------pGG~----~~~~~~i~~ai~~~k~~kpvva~~~~~~ 107 (293)
+++++.-+-+ .+-+.+.+.+.-.+..|.=|--+.|- ++.. ......+++.+.++++.-|-+.+ + .|
T Consensus 158 ~vLDl~~peV-~~~l~~~i~~ll~~~~I~YiKWDmNR~~~~~~s~~~~~~~~h~~~~glY~ll~~L~~~~P~v~i-E-~C 234 (395)
T pfam02065 158 LVLDLSNPDV-VDYIYEEMDQLLGNNPIDYIKWDMNRNLTEIGSPRLPAEAYHRYILGLYRLFDRLTTAFPHILF-E-SC 234 (395)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE-E-EC
T ss_conf 5775798899-9999999999998689987986057787878998886088999999999999999987999689-8-16
Q ss_pred CCCC----CCCCCCCCCCCCCHH
Q ss_conf 3223----210001110001301
Q gi|254780747|r 108 ASAG----YLISCASNIIVAAET 126 (293)
Q Consensus 108 ~S~~----Y~iAs~ad~I~a~p~ 126 (293)
+||| |-+...++.+|.+.+
T Consensus 235 ssGGgR~D~gmL~~~~~~W~SD~ 257 (395)
T pfam02065 235 SSGGGRFDPGMLYYAPQIWTSDN 257 (395)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 89877567467853782112489
No 342
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=28.96 E-value=30 Score=15.21 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999986189987999975-8888888999999999998414786799603323322
Q gi|254780747|r 55 ERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASA 110 (293)
Q Consensus 55 ~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~ 110 (293)
+.++++-. ++.+.|++.- .+|-..+.-.+.|.+.- ..+.+.+.+++..++.
T Consensus 127 ~~~~~~i~-~~Tkli~~Esp~NP~l~v~Di~~i~~iA----~~~g~~~vvDNT~atP 178 (366)
T PRK08247 127 KAIEQAIT-PNTKAIFIETPTNPLMQETDIAAIAKIA----KKHGLLLIVDNTFYTP 178 (366)
T ss_pred HHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHH----HHCCCEEEECCCCCCC
T ss_conf 99997538-6754999855999853501599999998----6467049841773441
No 343
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=28.91 E-value=42 Score=14.32 Aligned_cols=25 Identities=8% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6789999887777766666778999
Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
.++++++++.+..++.+..+.|-..
T Consensus 192 ~~l~~~d~~~L~~~i~~~~~~t~s~ 216 (232)
T cd00981 192 FELTEEDLEFIEKYIEEFCKEFGYD 216 (232)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 2599999999999999999998986
No 344
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=28.49 E-value=42 Score=14.27 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=6.0
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 46667899998877777
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDV 181 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~ 181 (293)
||+..+.+..++.+.++
T Consensus 167 EPTs~LD~~~~~~i~~l 183 (242)
T PRK11124 167 EPTAALDPEITAQIVSI 183 (242)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 88654899999999999
No 345
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=28.47 E-value=42 Score=14.27 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 30135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 124 ~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
..+.+.++.|+....+ +.++|.|+.++.+.+.+-.-....-...+..++..++++++++
T Consensus 7 ~s~~m~~~~GFLa~vF---~if~~~~vsVDlisTSEvsVS~tlD~~~~~~~~~~l~~l~~eL 65 (75)
T cd04912 7 KSNRMLGAHGFLAKVF---EIFAKHGLSVDLISTSEVSVSLTLDPTKNLSDQLLLDALVKDL 65 (75)
T ss_pred ECCCHHHHCCHHHHHH---HHHHHCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 4564665632899999---9999829955899805518999984887532066799999999
No 346
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234 These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=28.35 E-value=13 Score=17.57 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEC---CCCCCCCCCC
Q ss_conf 000111000130135345556530210245677742042255315---5211234666
Q gi|254780747|r 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS---PMKAEPSPFS 168 (293)
Q Consensus 114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g---~~K~~~~p~~ 168 (293)
+-.++||+++.. |++||. ...+++.+.|.||++..+... ++|.+..|-+
T Consensus 89 L~~AGDhvv~sR-SlFGst-----~~~~~~~l~rFGv~v~fv~~~Dl~~WeaA~~~nT 140 (386)
T TIGR01325 89 LLSAGDHVVASR-SLFGST-----VVLVSEILPRFGVEVSFVDATDLKAWEAALKPNT 140 (386)
T ss_pred HHCCCCEEEEEE-CHHCCE-----EEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCC
T ss_conf 861687799851-000320-----0210125343540675178678788898569995
No 347
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=28.23 E-value=43 Score=14.24 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |++..+......++.+..+.|+.-.|-+.
T Consensus 43 ~p~~Ivl---SpGPg~P~~~~~~~~~i~~~~~~iPiLGIClG~ 82 (187)
T PRK08007 43 KPQKIVI---SPGPCTPDEAGISLDVIRHYAGRLPILGVCLGH 82 (187)
T ss_pred CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf 9897999---999999589084046899753899889987999
No 348
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=27.97 E-value=43 Score=14.22 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=11.1
Q ss_pred CCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf 980623-8989999999974187765
Q gi|254780747|r 222 GLIDVV-GGQEEVWQSLYALGVDQSI 246 (293)
Q Consensus 222 GLvD~i-g~~~~a~~~l~~~~~~~~~ 246 (293)
..+.++ |++.+-++-+..+...++.
T Consensus 130 ~~p~~LSGGe~QRVAIARAL~~~P~i 155 (206)
T TIGR03608 130 QKIYELSGGEQQRVALARAILKPSEL 155 (206)
T ss_pred CCCHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 99244486999999999998249999
No 349
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.94 E-value=43 Score=14.21 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 898999999997418776
Q gi|254780747|r 228 GGQEEVWQSLYALGVDQS 245 (293)
Q Consensus 228 g~~~~a~~~l~~~~~~~~ 245 (293)
|+..+-+.-+..+...++
T Consensus 137 GGqkQrv~iAral~~~P~ 154 (211)
T cd03225 137 GGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 989999999999975999
No 350
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=27.92 E-value=43 Score=14.21 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf 69999999998618998799997588888889999999999984147867996033233223210001110001-30135
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA-AETSL 128 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a-~p~s~ 128 (293)
.++.+.-....+.+|++ ++|+=-+-|-++...+++.+.|+++++.+..+.++.+.. ..+...||+|+. ..+-+
T Consensus 139 ~~Qrv~ia~al~~~p~i--lilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~itH~l----~~v~~~~Drv~vm~~G~i 212 (491)
T PRK10982 139 QMQMIEIAKAFSYNAKI--VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM----EEIFQLCDEITILRDGQW 212 (491)
T ss_pred HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCCCEEEECCCCEE
T ss_conf 99999999998539988--981587345587888999888888774285367862436----744215867897569749
No 351
>KOG1532 consensus
Probab=27.89 E-value=43 Score=14.21 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC----CHHHH-HHHHHHHHHHCCCCC-EEEEECCCCCC
Q ss_conf 9999999998618998799997588888----88999-999999998414786-79960332332
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG----SAYAG-EAIFRAIQKVKNRKP-VITEVHEMAAS 109 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG----~~~~~-~~i~~ai~~~k~~kp-vva~~~~~~~S 109 (293)
+++++.|+++.+. .+- +-||+||- .+.++ ..|.+.+ ++..| |++|+-+..-|
T Consensus 103 dqv~~~iek~~~~--~~~--~liDTPGQIE~FtWSAsGsIIte~l---ass~ptvv~YvvDt~rs 160 (366)
T KOG1532 103 DQVIELIEKRAEE--FDY--VLIDTPGQIEAFTWSASGSIITETL---ASSFPTVVVYVVDTPRS 160 (366)
T ss_pred HHHHHHHHHHHCC--CCE--EEECCCCCEEEEEECCCCCCHHHHH---HHCCCEEEEEEECCCCC
T ss_conf 9999999974220--477--9974888068998427850158667---61398599999447767
No 352
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=27.71 E-value=22 Score=16.07 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=35.5
Q ss_pred EEEEECC--CCCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999758--88888899999999999841478-67996033233223210001110001301353455565302102456
Q gi|254780747|r 68 ALIVSLS--SPGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPF 144 (293)
Q Consensus 68 ~ivL~i~--SpGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~l 144 (293)
-|.|.-. ++.|+----..|.+++-.-+-+| .+++ +.-+.+-|.-+|++|-..=+.=.-.+|..-+.-|.+|.-.
T Consensus 76 kIylKrEdlnhtGsHKiNnalgQallAkrmGkkriia--ETGAGQhG~A~A~a~A~~Gl~c~VyMg~~D~~rQ~~NV~r- 152 (392)
T PRK04346 76 KIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIA--ETGAGQHGVATATAAALFGLECVVYMGAEDVERQALNVFR- 152 (392)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE--CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH-
T ss_conf 6888632678776543010699999999808833540--4462066789999999809963899715655313523899-
Q ss_pred HHHHHHCCEEEEECC
Q ss_conf 777420422553155
Q gi|254780747|r 145 LDKLGVSIKSVKSSP 159 (293)
Q Consensus 145 l~k~gi~~~~~~~g~ 159 (293)
++-+|-++..+.+|.
T Consensus 153 M~llGA~Vvpv~sGs 167 (392)
T PRK04346 153 MKLLGAEVVPVTSGS 167 (392)
T ss_pred HHHCCCEEEEECCCC
T ss_conf 998698599827877
No 353
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=27.42 E-value=44 Score=14.15 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=77.6
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCCEEEEE-CCC
Q ss_conf 99999999841478679960332332232100011100013013534--555653021024567774204225531-552
Q gi|254780747|r 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSIKSVKS-SPM 160 (293)
Q Consensus 84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~~~~~~-g~~ 160 (293)
+.|.++|+.+|+++||+++=++---.-|.++ .+|+.+-......+- .-|.++.. --.+..+++|+..-+-.. ..+
T Consensus 14 ~~Ie~Ai~al~~G~~Viv~Dd~dREnEgDlv-~aAe~~t~e~v~fm~~~~~GliCv~-~~~~~~~~L~Lp~m~~~n~~~~ 91 (217)
T PRK03353 14 ERVEAALDALREGRGVLVLDDEDRENEGDMI-FAAETMTVEQMALTIRHGSGIVCLC-LTEERRKQLDLPMMVENNTSQY 91 (217)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCCEEEC-CCHHHHHHCCCCCCCCCCCCCC
T ss_conf 1599999999879959998389987640689-7854399999999999579978835-9999998679967568776645
Q ss_pred CC-------CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH
Q ss_conf 11-------234-6667899998877777666667789999851499988998873498237889987798062389899
Q gi|254780747|r 161 KA-------EPS-PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 (293)
Q Consensus 161 K~-------~~~-p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~ 232 (293)
.. +.+ .++..|..+|...-.. ....+-.+++. ..-|.+| .-.|.+-|+..+-| .-|
T Consensus 92 ~taFtvsvd~~~g~~TGISa~DRa~Tir~------------la~~~~~~~df--~~PGHVf-pL~a~~GGvl~R~G-HTE 155 (217)
T PRK03353 92 GTAFTVTIEAAEGVTTGVSAADRITTIRA------------AIADGAKPSDL--NRPGHVF-PLRAQPGGVLTRRG-HTE 155 (217)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHH------------HHCCCCCHHHC--CCCCCCC-EEEECCCCCCCCCC-HHH
T ss_conf 78751555230588788798999998998------------73889985346--8998124-02143688353797-899
Q ss_pred HHHHHHHHCCCCCCCCEEEC
Q ss_conf 99999974187765301201
Q gi|254780747|r 233 VWQSLYALGVDQSIRKIKDW 252 (293)
Q Consensus 233 a~~~l~~~~~~~~~~~~~~~ 252 (293)
+--.|..+++....-.+-..
T Consensus 156 asvdLa~LAGl~PvavicEi 175 (217)
T PRK03353 156 ATIDLMTLAGLKPAGVLCEL 175 (217)
T ss_pred HHHHHHHHCCCCCEEEEEEE
T ss_conf 99999998199965999999
No 354
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=27.13 E-value=45 Score=14.12 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99879999758888-88899999999999841478679960332
Q gi|254780747|r 64 DSATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 64 ~~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
.+.+||+|. || |++.........++.+++++|+...+-++
T Consensus 41 ~~~~giiLS---~GPg~p~~~~~~~~~~~~l~~~iPiLGIC~G~ 81 (184)
T cd01743 41 LNPDAIVIS---PGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred CCCCEEEEC---CCCCCHHHCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 297999999---99989256146099999984699899980999
No 355
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=45 Score=14.08 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCC-----CCEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999861899-----879999758888--8889999999999984147867996
Q gi|254780747|r 51 QELIERIERISRDDS-----ATALIVSLSSPG--GSAYAGEAIFRAIQKVKNRKPVITE 102 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~-----ik~ivL~i~SpG--G~~~~~~~i~~ai~~~k~~kpvva~ 102 (293)
+.+...|++|.++.+ |.+|-.- ..|| |+..-.-..+++|. +.-+||.+..
T Consensus 52 e~i~~li~~al~eA~~~~~dID~IA~T-~gPGL~gaL~VG~~~Ak~LA-~a~~kPli~V 108 (342)
T COG0533 52 ENIPPLIEEALAEAGVSLEDIDAIAVT-AGPGLGGALLVGATAAKALA-LALNKPLIPV 108 (342)
T ss_pred HHHHHHHHHHHHHCCCCHHCCCEEEEE-CCCCCHHHHHHHHHHHHHHH-HHHCCCEEEC
T ss_conf 989999999999849983018889981-69994477899999999999-9829997231
No 356
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=26.57 E-value=46 Score=14.06 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=6.4
Q ss_pred HHHHHHHHHHCCCCCEEE
Q ss_conf 999999998414786799
Q gi|254780747|r 84 EAIFRAIQKVKNRKPVIT 101 (293)
Q Consensus 84 ~~i~~ai~~~k~~kpvva 101 (293)
-..+++|.. .-+||++.
T Consensus 90 ~~~Ak~La~-~~~~Plig 106 (536)
T PRK09605 90 ATAARALAL-SLDVPLIG 106 (536)
T ss_pred HHHHHHHHH-HHCCCEEE
T ss_conf 999999999-84998500
No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.27 E-value=46 Score=14.02 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=13.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23466678999988777776666
Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
.-||+..+.+..++.+.+++.++
T Consensus 119 LDEPt~gLD~~~~~~i~~~i~~l 141 (173)
T cd03230 119 LDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 90886579999999999999999
No 358
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.15 E-value=47 Score=14.01 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9879999758888-88899999999999841478679960332
Q gi|254780747|r 65 SATALIVSLSSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEM 106 (293)
Q Consensus 65 ~ik~ivL~i~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~ 106 (293)
+.++|+| ||| |++.........++.+..+.|+.-.|-+.
T Consensus 43 ~p~~Iil---S~GPg~p~~~~~~~~~~~~~~~~iPILGIClG~ 82 (192)
T PRK08857 43 NPSHLVI---SPGPCTPNEAGISLQAIEHFAGKLPILGVCLGH 82 (192)
T ss_pred CCCEEEE---CCCCCCHHHCCCCHHHHHHHCCCCCEEEECHHH
T ss_conf 9795999---899999678286146699735799989987999
No 359
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=25.89 E-value=47 Score=13.98 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH------------CCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf 99999999986------------1899879999758888888-------99999999999841-4786799603323
Q gi|254780747|r 51 QELIERIERIS------------RDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVK-NRKPVITEVHEMA 107 (293)
Q Consensus 51 ~~l~~~l~~a~------------~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k-~~kpvva~~~~~~ 107 (293)
++-++.|+++. .-|.+.+|+| |||-+ ++...+.+.|+++. +++||++=++++.
T Consensus 14 ~enl~~L~~~Gaelv~FSPl~d~~lP~~d~lyl----gGGyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECGGlM 86 (198)
T cd03130 14 PENLELLEAAGAELVPFSPLKDEELPDADGLYL----GGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLM 86 (198)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 999999998899789877767888998768982----7998758899997679999999999984997799820488
No 360
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=25.86 E-value=47 Score=13.98 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCC-------------
Q ss_conf 99999999986189987999975--8888888999999999998414-7867996033233223210-------------
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSL--SSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLI------------- 114 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i--~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~i------------- 114 (293)
+.+-+.|+.-. -++|.-|++.+ ||.||.+...+.|++.=+-.++ +.|++--..-.+ --+|+|
T Consensus 164 ~kLe~~i~~~g-~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la~~~gipl~lDaaRfa-ENAyFIk~RE~gy~~~si~ 241 (459)
T PRK13237 164 DKLQKLIDEVG-AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCV-ENAYFIKEREEGYQDKSIK 241 (459)
T ss_pred HHHHHHHHHHC-CCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH-HHHHHHHHCCCCCCCCCHH
T ss_conf 99999998748-556008999985268788064689999999999980996998766788-7689998344201489999
Q ss_pred ------CCCCCCCCCCH--HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf ------00111000130--13534555653021024567774
Q gi|254780747|r 115 ------SCASNIIVAAE--TSLVGSIGVLFQYPYVKPFLDKL 148 (293)
Q Consensus 115 ------As~ad~I~a~p--~s~vGsiGv~~~~~~~~~ll~k~ 148 (293)
.+.||-++|+- .+++.-=|+++. +-++++++.
T Consensus 242 eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~--~d~~l~~~~ 281 (459)
T PRK13237 242 EILKEMFSYADGATMSGKKDCLVNIGGFLAM--NDDELFQEA 281 (459)
T ss_pred HHHHHHHHHHHEEEEEECCCCCCCCCCEEEE--CCHHHHHHH
T ss_conf 9999997440279998320253465567985--779999999
No 361
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=25.68 E-value=30 Score=15.19 Aligned_cols=74 Identities=27% Similarity=0.436 Sum_probs=48.0
Q ss_pred HHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC---CCCCCCCCCCHHHHH
Q ss_conf 9999998618998799997-588888889999999999984147867996033233223210---001110001301353
Q gi|254780747|r 54 IERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI---SCASNIIVAAETSLV 129 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i---As~ad~I~a~p~s~v 129 (293)
.+.++++- |++-|+|++. |..|++.+.-.+.|.+.-+ +.+-|.+ +++.+++. |++ --.||-++-+-+-.+
T Consensus 137 ~~~~~~aI-~~nTkavf~EtigNP~~~v~Die~ia~iAh--~~gvpli--VDNT~atp-yl~rP~~hGADIVvHS~TK~i 210 (426)
T COG2873 137 PENFEAAI-DENTKAVFAETIGNPGLDVLDIEAIAEIAH--RHGVPLI--VDNTFATP-YLCRPIEHGADIVVHSATKYI 210 (426)
T ss_pred HHHHHHHH-CCCCCEEEEEECCCCCCCCCCHHHHHHHHH--HCCCCEE--EECCCCCC-EECCHHHCCCCEEEEEECCCC
T ss_conf 89999873-822406878751688766357799999998--7599389--83677730-043665618877998603012
Q ss_pred HHHH
Q ss_conf 4555
Q gi|254780747|r 130 GSIG 133 (293)
Q Consensus 130 GsiG 133 (293)
|--|
T Consensus 211 gGhG 214 (426)
T COG2873 211 GGHG 214 (426)
T ss_pred CCCC
T ss_conf 6776
No 362
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.65 E-value=48 Score=13.95 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=49.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9758888888999999999998414--78679960332332232100011100013013534555653021024567774
Q gi|254780747|r 71 VSLSSPGGSAYAGEAIFRAIQKVKN--RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKL 148 (293)
Q Consensus 71 L~i~SpGG~~~~~~~i~~ai~~~k~--~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~ 148 (293)
|-+=+.|++ +.-+.+++++..+ +.++.+.... .+..+-+.---|-+...|. |......++..-|++
T Consensus 4 Ll~Ca~GmS---Ss~la~~m~k~A~~~gi~~~i~A~~--~~~~~d~~~~yDvilLaPQ-------v~~~~~~lk~~ad~~ 71 (99)
T cd05565 4 LVLCAGGGT---SGLLANALNKGAKERGVPLEAAAGA--YGSHYDMIPDYDLVILAPQ-------MASYYDELKKDTDRL 71 (99)
T ss_pred EEEECCCCC---HHHHHHHHHHHHHHCCCCEEEEEEE--CHHHHHHHHCCCEEEECHH-------HHHHHHHHHHHHHHC
T ss_conf 999079885---8999999999999819976999510--3448988707999999850-------888899999999983
Q ss_pred HHCCEEEEECCCC
Q ss_conf 2042255315521
Q gi|254780747|r 149 GVSIKSVKSSPMK 161 (293)
Q Consensus 149 gi~~~~~~~g~~K 161 (293)
|++...+.--+|-
T Consensus 72 Gi~v~~i~~~~Yi 84 (99)
T cd05565 72 GIKLVTTTGKQYI 84 (99)
T ss_pred CCEEEEECHHHEE
T ss_conf 9918870834522
No 363
>PRK09051 beta-ketothiolase; Provisional
Probab=25.61 E-value=46 Score=14.04 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=70.9
Q ss_pred HHHHHHHCC-CCCCEEEEE-CCCCCCCHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999998618-998799997-5888888899999999999---84147867996033233223210001110001301353
Q gi|254780747|r 55 ERIERISRD-DSATALIVS-LSSPGGSAYAGEAIFRAIQ---KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLV 129 (293)
Q Consensus 55 ~~l~~a~~d-~~ik~ivL~-i~SpGG~~~~~~~i~~ai~---~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~v 129 (293)
..|++..-| +.|..|++= +...|+... .+.+... .+....|-++ ++..|+||---|..+++.|-+....++
T Consensus 37 ~~l~r~~i~p~~Id~Vi~G~v~~~g~~~~---niaR~aal~aGlp~~vp~~t-Vnr~C~SGl~Ai~~Aa~~I~~G~~d~v 112 (394)
T PRK09051 37 EALARAGVDGDQVGHVVFGHVIPTEPRDM---YLSRVAAINAGVPQETPALN-VNRLCGSGLQAIVSAAQAILLGDADVA 112 (394)
T ss_pred HHHHHCCCCHHHCCEEEEEECCCCCCCCC---CHHHHHHHHCCCCCCCCCEE-EHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99987198989989799992355676676---78999999769998887188-715547789999999999976998877
Q ss_pred HHHHHH--HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 455565--302102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r 130 GSIGVL--FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 (293)
Q Consensus 130 GsiGv~--~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~ 207 (293)
=.-|+- .+.|+...- .+.| .+.|+.+........+++. +-+......-+.+++..++++++.+++
T Consensus 113 iAGGvEsmS~~P~~~~~-~r~g-----~~~g~~~~~d~~~~~l~d~-------~~~~~Mg~tAE~~A~~~~IsRe~qD~~ 179 (394)
T PRK09051 113 IGGGAESMSRAPYLLPA-ARWG-----ARMGDAKLVDMMVGALHDP-------FGTIHMGVTAENVAAKYGISREAQDAL 179 (394)
T ss_pred EEECCHHCCCCCCCCCC-CCCC-----CCCCCCCCHHHHCCCCCCC-------CCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 87241020358534753-3224-----3457662101002434475-------668768888998999859899999999
Q ss_pred HCCCCCCHHHHHHCCCCC-CCC
Q ss_conf 349823788998779806-238
Q gi|254780747|r 208 SDGRIWTGAEAKKVGLID-VVG 228 (293)
Q Consensus 208 ~~g~~~~~~~A~~~GLvD-~ig 228 (293)
+-...-.+.+|.+.|.-+ +|.
T Consensus 180 A~~Sh~rA~~A~~~G~f~~EIv 201 (394)
T PRK09051 180 ALESHRRAARAIAAGYFKDQIV 201 (394)
T ss_pred HHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9998999999987598620163
No 364
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=25.27 E-value=48 Score=13.91 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=47.7
Q ss_pred EEEEEEECCH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCC
Q ss_conf 9976662386---9999999998618998799997588888889999999999984--1478679960332332232100
Q gi|254780747|r 41 IAIRGQIEDS---QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV--KNRKPVITEVHEMAASAGYLIS 115 (293)
Q Consensus 41 i~i~G~I~~~---~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~--k~~kpvva~~~~~~~S~~Y~iA 115 (293)
...++.|.++ +++++.+++.++-++. |+|+=.| -++=|-|+++|.+. |++||.|=+ +.-|.|-+ +|
T Consensus 209 ~~~~~i~G~Spam~~v~~~~~~vA~~nST--VLlRGES----GTGKEl~A~AIH~~SpR~~~PFVK~-NCAALse~-lL- 279 (574)
T TIGR01817 209 GKEDGIVGKSPAMRQVVDQIKVVARSNST--VLLRGES----GTGKELIAKAIHELSPRAKRPFVKL-NCAALSET-LL- 279 (574)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCE--EEEECCC----CCCHHHHHHHHCCCCCCCCCCCEEE-ECCCCCCC-HH-
T ss_conf 34474012478999999886520131766--7850565----7443344423404664557885450-06447761-12-
Q ss_pred CCCCCCCCC-HHHHHHHHHHH
Q ss_conf 011100013-01353455565
Q gi|254780747|r 116 CASNIIVAA-ETSLVGSIGVL 135 (293)
Q Consensus 116 s~ad~I~a~-p~s~vGsiGv~ 135 (293)
=.|.|-| .++.+|-|.-+
T Consensus 280 --ESELFGHEKGAFTGA~~~R 298 (574)
T TIGR01817 280 --ESELFGHEKGAFTGAVAQR 298 (574)
T ss_pred --HHHHHCCCCHHHHHHHHHC
T ss_conf --4545134301468887517
No 365
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.76 E-value=49 Score=13.85 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCC-CCCCCCC--CHHHHHHHHHH
Q ss_conf 18998799997588---8888899999999999841478-6799603323322321000-1110001--30135345556
Q gi|254780747|r 62 RDDSATALIVSLSS---PGGSAYAGEAIFRAIQKVKNRK-PVITEVHEMAASAGYLISC-ASNIIVA--AETSLVGSIGV 134 (293)
Q Consensus 62 ~d~~ik~ivL~i~S---pGG~~~~~~~i~~ai~~~k~~k-pvva~~~~~~~S~~Y~iAs-~ad~I~a--~p~s~vGsiGv 134 (293)
+..+++||++++|. |=-...++.++.+-+.++|..+ +++++-+....--+++... .-+.|+. -|.+
T Consensus 24 ~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~------- 96 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFG------- 96 (175)
T ss_pred HHCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCH-------
T ss_conf 9759818998166751104699899999999999986597799981897888876665259723402259627-------
Q ss_pred HHCCCHHHHHHHHHHHCCEEE
Q ss_conf 530210245677742042255
Q gi|254780747|r 135 LFQYPYVKPFLDKLGVSIKSV 155 (293)
Q Consensus 135 ~~~~~~~~~ll~k~gi~~~~~ 155 (293)
..|...+.++++..+..
T Consensus 97 ----~~fr~Al~~m~l~~~~v 113 (175)
T COG2179 97 ----RAFRRALKEMNLPPEEV 113 (175)
T ss_pred ----HHHHHHHHHCCCCHHHE
T ss_conf ----99999999809983687
No 366
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=24.68 E-value=48 Score=13.95 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 9987999975888888899999999999841478679960332332232100011
Q gi|254780747|r 64 DSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293)
Q Consensus 64 ~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293)
+....+++ ....+.......++.+.|++..+....++. .++|.+++|.++
T Consensus 63 ~~~D~liV-~Gg~~~~~~~~~~~~~~L~~~~~~g~~v~s----vctGa~~LA~aG 112 (185)
T cd03136 63 PPLDYLFV-VGGLGARRAVTPALLAWLRRAARRGVALGG----IDTGAFLLARAG 112 (185)
T ss_pred CCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEE----ECHHHHHHHHCC
T ss_conf 76789998-788880214799999999999870998998----647999999818
No 367
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=24.64 E-value=50 Score=13.83 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=3.1
Q ss_pred CCCCCCHHHH
Q ss_conf 6667899998
Q gi|254780747|r 166 PFSEVNPKAV 175 (293)
Q Consensus 166 p~~~~s~e~~ 175 (293)
|+..+.+..+
T Consensus 156 Pts~LD~~~~ 165 (233)
T PRK10771 156 PFSALDPALR 165 (233)
T ss_pred CCCCCCHHHH
T ss_conf 7755799999
No 368
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.42 E-value=50 Score=13.81 Aligned_cols=41 Identities=5% Similarity=0.140 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCCCEEEEECCC-CCCCHHH------HHHHHHHHHHH
Q ss_conf 99999998618998799997588-8888899------99999999984
Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSS-PGGSAYA------GEAIFRAIQKV 93 (293)
Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~------~~~i~~ai~~~ 93 (293)
.+.-.+.+++.-+|.-+++++-. +.+.++. ..++.++|+.+
T Consensus 124 ~~KWye~~are~~IPlf~iDip~~~~~e~~~~~i~Yv~~Q~~d~I~~L 171 (430)
T TIGR03191 124 HAKWYQHVAKEEKIPDFYLDVGVGAYKDLTDARLDYVANQLHDGIEFV 171 (430)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899999999971999699826878888779899999999999999999
No 369
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.31 E-value=50 Score=13.80 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCC-----CCCCCCCC
Q ss_conf 869999999998618998799997588888---88999999999998-4147867996033233223-----21000111
Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQK-VKNRKPVITEVHEMAASAG-----YLISCASN 119 (293)
Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG---~~~~~~~i~~ai~~-~k~~kpvva~~~~~~~S~~-----Y~iAs~ad 119 (293)
+.+.+.+.++... +..+.||++-=.+.-+ +...-.++.+...+ .+.+.||++-++. ...-. +.-...+|
T Consensus 24 D~~~~~~~i~~l~-~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg~-~t~~ai~la~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLL-GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999-77999899783051666589999999999999983898415127861-299999999999875999
Q ss_pred CCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEE
Q ss_conf 0001-301353455565302102456777420422553
Q gi|254780747|r 120 IIVA-AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 (293)
Q Consensus 120 ~I~a-~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~ 156 (293)
-+.. +|.-.-++- -...-+|+.+.+..++.+-.+.
T Consensus 102 ~v~v~pPyy~~~~~--~~l~~~f~~ia~a~~~pi~lYn 137 (296)
T TIGR03249 102 GYLLLPPYLINGEQ--EGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred EEEECCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEC
T ss_conf 78977998899999--9999999999971599778730
No 370
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=23.83 E-value=51 Score=13.74 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=68.1
Q ss_pred CC-CCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 88-888999999999998414-78679960332332232100011100013-0135345556530210245677742042
Q gi|254780747|r 76 PG-GSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKLGVSI 152 (293)
Q Consensus 76 pG-G~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~-p~s~vGsiGv~~~~~~~~~ll~k~gi~~ 152 (293)
|. |-+.+..-.+|.+.|++. ++--+.|+.+.=.= |.-|.+.|..-=.+ |-.++.. .+..++++++.++|.+
T Consensus 14 pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEH-G~kI~~~A~~~g~tqP~~~vd~-----~~~~f~~~~~~lnI~f 87 (573)
T TIGR00398 14 PHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEH-GTKIELKAEQEGLTQPKELVDK-----YHEEFKKLWKWLNISF 87 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHCCCC
T ss_conf 121036677789999999985289747898513446-8788886987089964899999-----9999999998728456
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 255315521123466678999988777776666677
Q gi|254780747|r 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 (293)
Q Consensus 153 ~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~ 188 (293)
+.|. |-.++++++..|..-..+++.
T Consensus 88 D~F~-----------RTTd~~H~~~v~~~f~~L~~n 112 (573)
T TIGR00398 88 DRFI-----------RTTDEEHKEIVQKIFQKLLEN 112 (573)
T ss_pred CCCC-----------CCCCHHHHHHHHHHHHHHHHC
T ss_conf 7654-----------676888899999999998753
No 371
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.79 E-value=52 Score=13.73 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=9.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..++..+
T Consensus 159 EPtsgLD~~~~~~i~~ll~~L 179 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESL 179 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 987657999999999999999
No 372
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=23.74 E-value=52 Score=13.73 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=7.6
Q ss_pred CCCCEEEEECCCCCCCH
Q ss_conf 99879999758888888
Q gi|254780747|r 64 DSATALIVSLSSPGGSA 80 (293)
Q Consensus 64 ~~ik~ivL~i~SpGG~~ 80 (293)
|+|+|.+..---|-|..
T Consensus 5 Pkirgfic~taHP~GC~ 21 (400)
T PRK13656 5 PKVRGFICTTAHPVGCE 21 (400)
T ss_pred CCCCCEEECCCCCHHHH
T ss_conf 53343356688968899
No 373
>PRK01060 endonuclease IV; Provisional
Probab=23.69 E-value=52 Score=13.72 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC--CH-HHHHHHHHHHHHH-CCCCCEEEEECCCCCCC
Q ss_conf 9999999998618998799997588888--88-9999999999984-14786799603323322
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG--SA-YAGEAIFRAIQKV-KNRKPVITEVHEMAASA 110 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG--~~-~~~~~i~~ai~~~-k~~kpvva~~~~~~~S~ 110 (293)
+.+.+.|+.+.. =.+++++++..|.-| .- .+.+.+.+.|++. ...+.+....+..|.+|
T Consensus 89 ~~l~~el~r~~~-lG~~~vV~HpGs~~g~~~~~~gi~~i~~~l~~~l~~~~~~~ilLEn~AGqG 151 (281)
T PRK01060 89 DALIDEIERCEA-LGAKLLNFHPGSHLGAIDEADCLDRIAESLNEALDKTQGVTIVLENTAGQG 151 (281)
T ss_pred HHHHHHHHHHHH-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 999999999998-099859845763368887999999999999999815898679997248999
No 374
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=23.69 E-value=52 Score=13.72 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 898999999997418776
Q gi|254780747|r 228 GGQEEVWQSLYALGVDQS 245 (293)
Q Consensus 228 g~~~~a~~~l~~~~~~~~ 245 (293)
|+..+-+.-+..+...++
T Consensus 148 GGq~QRv~iAraL~~~P~ 165 (228)
T cd03257 148 GGQRQRVAIARALALNPK 165 (228)
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 889999998211047999
No 375
>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=23.68 E-value=41 Score=14.33 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHH-HHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 34555-65302102456777420422553155211234666789999887777766666778999985149998899887
Q gi|254780747|r 129 VGSIG-VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL 207 (293)
Q Consensus 129 vGsiG-v~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~ 207 (293)
+|+++ +..-.|.+.+..+....+...-+...++.. ...||+++|+.- .+++. .=+..||++-|.+.++++++
T Consensus 17 mG~l~~i~~miPG~~~~~~~~~~~~~~~~lk~~~~I---i~SMT~~Er~~P-~ll~~---SR~~RIA~GSG~~~~eVn~L 89 (100)
T pfam02978 17 MGPLSKLLSMIPGMGKLPKLAEQELDEKKLKRIEAI---IDSMTPKERDNP-EIING---SRKRRIAKGSGTSVQEVNKL 89 (100)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHCC-CCCCH---HHHHHHHHCCCCCHHHHHHH
T ss_conf 378999997787854024566530158999999999---983799988682-41386---79999980069999999999
Q ss_pred HC
Q ss_conf 34
Q gi|254780747|r 208 SD 209 (293)
Q Consensus 208 ~~ 209 (293)
..
T Consensus 90 lk 91 (100)
T pfam02978 90 LK 91 (100)
T ss_pred HH
T ss_conf 99
No 376
>pfam06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N). This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with pfam01676 (located in the C-terminal region of the protein).
Probab=23.56 E-value=52 Score=13.70 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=34.7
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCC-E--EEEECCC
Q ss_conf 662386999999999861899879999758888888999999999998414-786-7--9960332
Q gi|254780747|r 45 GQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKP-V--ITEVHEM 106 (293)
Q Consensus 45 G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kp-v--va~~~~~ 106 (293)
|.+...+.+.+.++++.+.. -+.-++=+=|+||.-...+-+...++-.++ +.| | .++.++.
T Consensus 8 g~~~~n~~l~~~~~~~k~~~-~~lHL~GL~SdGGVHShidHl~al~~~a~~~gv~~v~lH~f~DGR 72 (223)
T pfam06415 8 GEFFSNPALLAAIDHVKKNN-GALHLIGLLSDGGVHSHIDHLFALLKLAKERGVKKVYIHAFTDGR 72 (223)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 98324999999999999739-859999941499763247999999999997188708999860688
No 377
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=23.52 E-value=52 Score=13.70 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=60.8
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CC-CCCEEEEECCCCCCCCCCCCCCCC------CCCC
Q ss_conf 9999998618998799997588888889999999999984---14-786799603323322321000111------0001
Q gi|254780747|r 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV---KN-RKPVITEVHEMAASAGYLISCASN------IIVA 123 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~---k~-~kpvva~~~~~~~S~~Y~iAs~ad------~I~a 123 (293)
.+.|++.-.-+.---|++.-.+ -++++|+.|..||.+. |. +-+-++ .++-|.+.|.-++.||- +|||
T Consensus 75 A~~LEe~Lgt~gr~rIyyK~E~--~~~tGSHK~NTA~AqAYYak~~G~k~l~-TETGAGQWG~AlS~A~al~~L~~~VfM 151 (426)
T TIGR01415 75 AKGLEELLGTPGRARIYYKYES--VSPTGSHKINTAIAQAYYAKKEGAKRLV-TETGAGQWGSALSLAGALFGLKVKVFM 151 (426)
T ss_pred HHHHHHHHCCCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 5444786289952789874057--5778885244799999987554843743-236886478999999987289258988
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3013534555653021024567774204225531552112346667899998877777
Q gi|254780747|r 124 AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDV 181 (293)
Q Consensus 124 ~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~ 181 (293)
-..|. -+.++-|-+|+-+|=++ ..|| ++.|+.-|+.+++.
T Consensus 152 vr~Sf-------~~KP~Rk~lM~~yGa~V----------~PSP-S~~T~~GR~~L~e~ 191 (426)
T TIGR01415 152 VRVSF-------QQKPYRKYLMELYGAEV----------IPSP-SELTEFGRKVLKED 191 (426)
T ss_pred EECCH-------HCCHHHHHHHHHCCCEE----------CCCC-CCCCHHHHHHHHCC
T ss_conf 74121-------04846899998708843----------3688-77513468887406
No 378
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=23.40 E-value=52 Score=13.69 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCC----CCCCHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 245677742042255315521123466----6789999-88777776666677899998
Q gi|254780747|r 141 VKPFLDKLGVSIKSVKSSPMKAEPSPF----SEVNPKA-VQMMQDVVDSSYHWFVRLVS 194 (293)
Q Consensus 141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~----~~~s~e~-~~~~~~~l~~~~~~f~~~Va 194 (293)
-.++++++|.+.--+.-- .. -|+ .+.|.++ .+.+++-|-+-+.+|++.+.
T Consensus 338 p~~~l~~yg~D~lRY~l~--~~--~p~~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~ 392 (666)
T PRK00133 338 ARTYLDHLDPDYLRYYLA--AK--LPSRIDDIDFNWEDFQQRVNSDLVGKLVNFASRAA 392 (666)
T ss_pred HHHHHHHCCCCCEEHHHH--HC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799998669645302033--10--78987677869999999986888876668999999
No 379
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=23.29 E-value=53 Score=13.67 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=12.7
Q ss_pred HHHCCCCCCC--CCHHHHHHHHHHHCC
Q ss_conf 9877980623--898999999997418
Q gi|254780747|r 218 AKKVGLIDVV--GGQEEVWQSLYALGV 242 (293)
Q Consensus 218 A~~~GLvD~i--g~~~~a~~~l~~~~~ 242 (293)
=++.-++|++ -+.+||...+..++.
T Consensus 239 iLd~~~~D~v~~V~~edA~~~ARrLA~ 265 (315)
T TIGR01136 239 ILDRSLIDEVITVSDEDAIETARRLAR 265 (315)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 137113310464182899999999987
No 380
>pfam09558 DUF2375 Protein of unknown function (DUF2375). Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by PEP_anchor (IPR013424).
Probab=23.20 E-value=43 Score=14.22 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9841478679960332332232100011100013
Q gi|254780747|r 91 QKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124 (293)
Q Consensus 91 ~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~ 124 (293)
++||.+|-++|.+++-| -.+-|-+|++|.+
T Consensus 41 qeFrrGKsIIAV~EGe~----~IlNslGerv~sq 70 (71)
T pfam09558 41 QEFRRGKSIIAVLEGEC----KILNSLGERVYSQ 70 (71)
T ss_pred HHHCCCCEEEEEEECCC----HHHHHHHHHHHHC
T ss_conf 58718975999971540----1366676777543
No 381
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=23.16 E-value=53 Score=13.66 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=3.1
Q ss_pred CCCCCCHHHH
Q ss_conf 6667899998
Q gi|254780747|r 166 PFSEVNPKAV 175 (293)
Q Consensus 166 p~~~~s~e~~ 175 (293)
|+..+.+..+
T Consensus 160 Pt~gLD~~~~ 169 (220)
T cd03263 160 PTSGLDPASR 169 (220)
T ss_pred CCCCCCHHHH
T ss_conf 8768899999
No 382
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=22.91 E-value=54 Score=13.63 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred HHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9999998618998799997-588888889999999999984147----86799603323322321000111000130135
Q gi|254780747|r 54 IERIERISRDDSATALIVS-LSSPGGSAYAGEAIFRAIQKVKNR----KPVITEVHEMAASAGYLISCASNIIVAAETSL 128 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~-i~SpGG~~~~~~~i~~ai~~~k~~----kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~ 128 (293)
++.+.+- .++.|..|++= +-.+|+. +.+... +.++ -|-++ ++..|+||---+..++..|-+....+
T Consensus 33 i~~l~~~-~~~~Id~vi~G~v~~~g~n------~aR~aa-L~aGlp~~vp~~t-Vnr~C~SGl~Av~~aa~~I~~G~~dv 103 (361)
T PRK06690 33 LTFLSKG-MERAIDDVILGNVVGPGGN------VARLSA-LEAGLGLHIPGVT-IDRQCGAGLEAIRTACHFIQGGAGKC 103 (361)
T ss_pred HHHHHHC-CCCCCCEEEEEECCCCCCH------HHHHHH-HHCCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999727-9111685999956776750------999999-9759998887588-87531588999999999996799998
Q ss_pred HHHHHHHH--CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 34555653--0210245677742042255315521123466678999988777776666677899998514999889988
Q gi|254780747|r 129 VGSIGVLF--QYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV 206 (293)
Q Consensus 129 vGsiGv~~--~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~ 206 (293)
+-.-|+-. ..|+.. +....|. .+. |.....-.+.+++..++++++.++
T Consensus 104 viAGGvEsmS~~P~~~------------------~~~~~~~-~~~-----------d~~MG~tAE~vA~~~~isRe~qDe 153 (361)
T PRK06690 104 YIAGGVESTSTSPFQN------------------RARFSPE-TIG-----------DPDMGVAAEYVAERYNITREMQDE 153 (361)
T ss_pred EEECCCCHHCCCCCCC------------------CCCCCCC-CCC-----------CCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9984701401252114------------------5677854-347-----------965899999999984979999999
Q ss_pred HHCCCCCCHHHHHHCCCCC-CCCCH
Q ss_conf 7349823788998779806-23898
Q gi|254780747|r 207 LSDGRIWTGAEAKKVGLID-VVGGQ 230 (293)
Q Consensus 207 ~~~g~~~~~~~A~~~GLvD-~ig~~ 230 (293)
++--..--+.+|.+.|.-+ +|-..
T Consensus 154 ~A~~Sh~rA~~A~~~G~f~~EIvPv 178 (361)
T PRK06690 154 YACLSYKRTLQALEKGYIHEEILSF 178 (361)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999899999998749852113766
No 383
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.88 E-value=54 Score=13.62 Aligned_cols=66 Identities=9% Similarity=0.103 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999998618998799997588888889999999999984147867996033233223210001110001
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a 123 (293)
++.+.--+....++.+ ++|+=-+.+-++.....+.+.|++++.+++.+..+.+.- + .+ ..||+|+.
T Consensus 102 kQRvalARal~~~p~i--lilDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~-~---~~-~~aD~Iiv 167 (173)
T cd03246 102 RQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-E---TL-ASADRILV 167 (173)
T ss_pred HHHHHHHHHHHCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-H---HH-HHCCEEEE
T ss_conf 9999999998279999--999687668998999999999997864898999984799-9---99-84999999
No 384
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.55 E-value=55 Score=13.58 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=31.8
Q ss_pred HCCEEEEECCCCCCCCCC--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 042255315521123466--67-89999887777766666778999985149
Q gi|254780747|r 150 VSIKSVKSSPMKAEPSPF--SE-VNPKAVQMMQDVVDSSYHWFVRLVSESRN 198 (293)
Q Consensus 150 i~~~~~~~g~~K~~~~p~--~~-~s~e~~~~~~~~l~~~~~~f~~~Va~~R~ 198 (293)
|-+-.++.|+.--+.|.- .| ++..-|+.++.++. -|+.|++...+-|.
T Consensus 124 i~Paiv~Rg~L~IAIST~G~SP~lAr~iR~klE~~~p-ey~~~~~~~g~~R~ 174 (222)
T PRK05562 124 VIPYQRSSKNMVFALNTKGGSPKTSVFIGEKVKNFLK-KYDDFIEYVTKIRN 174 (222)
T ss_pred EECEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 9770997289799998999897999999999999878-89999999999999
No 385
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=22.24 E-value=55 Score=13.54 Aligned_cols=10 Identities=20% Similarity=-0.007 Sum_probs=3.1
Q ss_pred HHHHHHCCCC
Q ss_conf 9999741877
Q gi|254780747|r 235 QSLYALGVDQ 244 (293)
Q Consensus 235 ~~l~~~~~~~ 244 (293)
.-+..+...+
T Consensus 151 aIArAL~~~P 160 (227)
T cd03260 151 CLARALANEP 160 (227)
T ss_pred HHHHHHHCCC
T ss_conf 9999983599
No 386
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.05 E-value=41 Score=14.35 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=6.2
Q ss_pred EEEEECCHHHHHHHHH
Q ss_conf 7666238699999999
Q gi|254780747|r 43 IRGQIEDSQELIERIE 58 (293)
Q Consensus 43 i~G~I~~~~~l~~~l~ 58 (293)
..|...+.+.+.+.|+
T Consensus 48 ~sG~~aD~~~l~~~l~ 63 (195)
T cd03759 48 LAGLATDVQTLAQKLR 63 (195)
T ss_pred EEECHHHHHHHHHHHH
T ss_conf 0684899999999999
No 387
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.84 E-value=56 Score=13.49 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 6999999999861899879999758888888999999999998414-786799603323322321000111000130
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p 125 (293)
+++-+.-.+....++++ ++|+=-+.|-++....++.+.|++++. .+..+.++.+.- ..+...||+|+.-.
T Consensus 76 qrQRv~iAral~~~p~l--llLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl----~~a~~~aDrI~vl~ 146 (177)
T cd03222 76 ELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL----AVLDYLSDRIHVFE 146 (177)
T ss_pred HHHHHHHHHHHHCCCCE--EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHHCCEEEEEE
T ss_conf 99999999998239999--9974886538999999999999999996597799985889----99998699999993
No 388
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.82 E-value=56 Score=13.49 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHC-CCCCCE
Q ss_conf 6999999999861-899879
Q gi|254780747|r 50 SQELIERIERISR-DDSATA 68 (293)
Q Consensus 50 ~~~l~~~l~~a~~-d~~ik~ 68 (293)
-.++++.|.-... |+...+
T Consensus 43 KSTLlk~i~Gll~~d~~~~g 62 (262)
T PRK09984 43 KSTLLRHLSGLITGDKSAGS 62 (262)
T ss_pred HHHHHHHHHCCCCCCCCCCE
T ss_conf 99999999756777989841
No 389
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=21.72 E-value=57 Score=13.48 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=46.0
Q ss_pred EEEECCHH---HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCCCCC
Q ss_conf 66623869---999999998618998799997588888889999999999984147867996033--2332232100011
Q gi|254780747|r 44 RGQIEDSQ---ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE--MAASAGYLISCAS 118 (293)
Q Consensus 44 ~G~I~~~~---~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~--~~~S~~Y~iAs~a 118 (293)
.|.+...+ ++++.+.++.....+++|+- ..=|+..+.+.|.+.++++|+..|-..|+-| +...|+-|++-..
T Consensus 49 ~g~v~~~e~l~~~l~~l~~~~~~~~~davlt---GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~ 125 (281)
T COG2240 49 TGIVMPPEQLADLLNGLEAIDKLGECDAVLT---GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEV 125 (281)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCH
T ss_conf 8857988999999999985441344688997---0479889999999999998624987389967743679963526431
Q ss_pred CC
Q ss_conf 10
Q gi|254780747|r 119 NI 120 (293)
Q Consensus 119 d~ 120 (293)
-.
T Consensus 126 ~~ 127 (281)
T COG2240 126 AE 127 (281)
T ss_pred HH
T ss_conf 89
No 390
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.38 E-value=58 Score=13.43 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=8.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466678999988777776666
Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~ 185 (293)
||+..+.+..++.+..++..+
T Consensus 179 EPt~gLD~~~~~~i~~~i~~l 199 (255)
T PRK11300 179 EPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 875469999999999999999
No 391
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=21.31 E-value=58 Score=13.42 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=81.8
Q ss_pred HHHHHHHHH---HCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHH-HHH-HHHCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 999999998---414786799603-32332232100011100013013534-555-653021024567774204225531
Q gi|254780747|r 84 EAIFRAIQK---VKNRKPVITEVH-EMAASAGYLISCASNIIVAAETSLVG-SIG-VLFQYPYVKPFLDKLGVSIKSVKS 157 (293)
Q Consensus 84 ~~i~~ai~~---~k~~kpvva~~~-~~~~S~~Y~iAs~ad~I~a~p~s~vG-siG-v~~~~~~~~~ll~k~gi~~~~~~~ 157 (293)
++...|+.+ ++.+.|.--|++ -.|.+.+|| |+|+.|+.+.....- -+- |--+..-.+.++|+ .=++.-+|.
T Consensus 34 ~~f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyF--CgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~-~R~V~QLHw 110 (462)
T TIGR00538 34 EEFKTALIKSNNLYKKTPLSLYVHIPFCEKACYF--CGCNVIITRRKEKKDPYLEALKKEIALVAPLLDK-DREVAQLHW 110 (462)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCC--CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 7899998722567888784112455234121320--1466113055651016799999999998777524-894688762
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCC---CCHHH---HHHCCCCCC
Q ss_conf 552112346667899998877777666667789999851-----4999889988734982---37889---987798062
Q gi|254780747|r 158 SPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES-----RNIPYDKTLVLSDGRI---WTGAE---AKKVGLIDV 226 (293)
Q Consensus 158 g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~-----R~~~~~~~~~~~~g~~---~~~~~---A~~~GLvD~ 226 (293)
|- |.| +-+|+++-+.+...+.+.+.+|-+.+.=+ |.++.|.+..+.+.+. =.|=| ..=..+|.+
T Consensus 111 GG----GTP-~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR 185 (462)
T TIGR00538 111 GG----GTP-TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNR 185 (462)
T ss_pred CC----CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCC
T ss_conf 78----983-3378899999999999873201158447765237413788999999758966423521078555444313
Q ss_pred CCCHHH
Q ss_conf 389899
Q gi|254780747|r 227 VGGQEE 232 (293)
Q Consensus 227 ig~~~~ 232 (293)
|-.++=
T Consensus 186 ~QP~e~ 191 (462)
T TIGR00538 186 IQPEEM 191 (462)
T ss_pred CCCHHH
T ss_conf 486899
No 392
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=21.29 E-value=58 Score=13.42 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=7.1
Q ss_pred EEEEEEECCHHHHH
Q ss_conf 99766623869999
Q gi|254780747|r 41 IAIRGQIEDSQELI 54 (293)
Q Consensus 41 i~i~G~I~~~~~l~ 54 (293)
-+.+|+|+..+...
T Consensus 4 ~DFDGTIT~~D~~~ 17 (214)
T TIGR03333 4 CDFDGTITNNDNII 17 (214)
T ss_pred ECCCCCCCCCHHHH
T ss_conf 36899878305599
No 393
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=21.25 E-value=48 Score=13.93 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=35.4
Q ss_pred EEEEECCCCCCCCCCC--CCC-CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE
Q ss_conf 7996033233223210--001-11000130135345556530210245677742042255
Q gi|254780747|r 99 VITEVHEMAASAGYLI--SCA-SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 (293)
Q Consensus 99 vva~~~~~~~S~~Y~i--As~-ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~ 155 (293)
=+.|.+...|+.+--. |.. +|.|...|+-=|-|||-+...+.++++|.+-++++-.+
T Consensus 213 dV~f~G~e~A~~a~~a~EAi~~~~~vligPSNPvtSIGpILal~Gire~Lrda~~kVVav 272 (359)
T TIGR01819 213 DVEFRGAEKAKAAPEAIEAIRDADVVLIGPSNPVTSIGPILALPGIREALRDATVKVVAV 272 (359)
T ss_pred EEEECCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf 366406533668878999860599899778668111322327256899998369738997
No 394
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.19 E-value=58 Score=13.41 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 8999999997418776
Q gi|254780747|r 230 QEEVWQSLYALGVDQS 245 (293)
Q Consensus 230 ~~~a~~~l~~~~~~~~ 245 (293)
..+-+.-+..+...++
T Consensus 135 ~kQrv~iAraL~~~P~ 150 (213)
T cd03259 135 QQQRVALARALAREPS 150 (213)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999876227999
No 395
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.14 E-value=58 Score=13.40 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCC---CHHHHHHHHHHHHHH-CCCCCEEEEECCCCCC
Q ss_conf 69999999998618998799997588888---889999999999984-1478679960332332
Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLSSPGG---SAYAGEAIFRAIQKV-KNRKPVITEVHEMAAS 109 (293)
Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~SpGG---~~~~~~~i~~ai~~~-k~~kpvva~~~~~~~S 109 (293)
.+.+.+.++...+...+.||++-=.+.-+ +...-.++.+...+. +.+.||++-++.....
T Consensus 23 ~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~st~ 86 (294)
T PRK04147 23 EQGLRQLVRFNIEKQGIDGLYVGGSTGEAFLLSTEERKQVLEIVAEEAKGKIKLIAQVGSVNTA 86 (294)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf 9999999999998779989997951316434899999999999999818973276347888889
No 396
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.03 E-value=59 Score=13.39 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHCCEEEEE-CC
Q ss_conf 999999999841478679960332332232100011100013013534--555653021024567774204225531-55
Q gi|254780747|r 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG--SIGVLFQYPYVKPFLDKLGVSIKSVKS-SP 159 (293)
Q Consensus 83 ~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG--siGv~~~~~~~~~ll~k~gi~~~~~~~-g~ 159 (293)
...|.++|+.+|++|||+++=++---.-|-++ .+|+++-......+- .-|+++... -.+..+++|+..-+-.. ..
T Consensus 18 ~s~Ie~AI~alr~Gk~VIv~DdedREnEGDlv-~aAe~~T~e~i~fm~~~~~GliCv~~-~~~~~~~L~Lp~mv~~n~~~ 95 (230)
T PRK00014 18 ATRLERALQHLRIGRPVILMDDFDRENEADLI-VAADKLTVPVMAQLIRDGSGIVCLCL-PGETLDRLELPPMVDSNRSR 95 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCEEEEEC-CHHHHHHCCCCCCCCCCCCC
T ss_conf 40899999999879969998089987641589-67422999999999995896089744-99999767996556877776
Q ss_pred CCCC-------CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 2112-------34-666789999887777766666778999985149998899887349823788998779806238989
Q gi|254780747|r 160 MKAE-------PS-PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE 231 (293)
Q Consensus 160 ~K~~-------~~-p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~ 231 (293)
|..+ .+ ..+..|..+|...-.. .+. .+-..++.. .-|.+| .-.|.+-|+-.+-|.-+
T Consensus 96 ~~T~ftvsvda~~g~tTGISa~DRa~TIr~-----------la~-~~~~~~Df~--~PGHVf-PL~A~~GGvl~R~GHTE 160 (230)
T PRK00014 96 YSTAFTVSIEAREGVTTGVSAVDRVTTIRA-----------AIA-PGARSGDVV--SPGHVF-PLRAQPGGVLTRRGHTE 160 (230)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHH-----------HHC-CCCCHHHCC--CCCCCC-EEEECCCCEEECCCCHH
T ss_conf 778737888605886488668899999999-----------868-899867728--999812-57656798813477069
Q ss_pred HHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9999999741877653012014
Q gi|254780747|r 232 EVWQSLYALGVDQSIRKIKDWN 253 (293)
Q Consensus 232 ~a~~~l~~~~~~~~~~~~~~~~ 253 (293)
+--.|..+++....-.+-..-
T Consensus 161 -asVdLa~LAGl~P~~vicEil 181 (230)
T PRK00014 161 -GSVDLAALAGLRPAGVLCELM 181 (230)
T ss_pred -HHHHHHHHCCCCCEEEEEEEE
T ss_conf -999999982999608999985
No 397
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.82 E-value=59 Score=13.36 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 9999998618998799997588888889999999999984147867996033233223210
Q gi|254780747|r 54 IERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 (293)
Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i 114 (293)
-..++++++--...--.+-+-.++-+....+.+++++.++ ..||.+|+-..+-|-..|.
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea--egPVlayCrsGtRs~~ly~ 105 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA--EGPVLAYCRSGTRSLNLYG 105 (130)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHH
T ss_conf 4999999996698258763479987999999999999970--8987865457706889999
No 398
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=20.53 E-value=60 Score=13.32 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=84.9
Q ss_pred HCCCCCEEEEECCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCH--------HHHHHHHHHHCCEEEEECCC
Q ss_conf 414786799603323322----321000111000130135345556530210--------24567774204225531552
Q gi|254780747|r 93 VKNRKPVITEVHEMAASA----GYLISCASNIIVAAETSLVGSIGVLFQYPY--------VKPFLDKLGVSIKSVKSSPM 160 (293)
Q Consensus 93 ~k~~kpvva~~~~~~~S~----~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~--------~~~ll~k~gi~~~~~~~g~~ 160 (293)
+.+.+|++| ++|.++|| +=.+|-.-+..|.+.+++-=.++......+ ...+++++.+++..-..+..
T Consensus 280 L~~~~~IIA-IDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~ 358 (512)
T PRK13477 280 LMKRRPIIA-IDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQ 358 (512)
T ss_pred CCCCCCEEE-EECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCE
T ss_conf 157887799-8678757878999999998199686244999999999997596976899999998729879831888762
Q ss_pred CCCCCCCCCC-----CHHHHH---------HHHHHHHHHHHHHH---HHHHHCCCCCHH-----HHHHHHCCCCC--CHH
Q ss_conf 1123466678-----999988---------77777666667789---999851499988-----99887349823--788
Q gi|254780747|r 161 KAEPSPFSEV-----NPKAVQ---------MMQDVVDSSYHWFV---RLVSESRNIPYD-----KTLVLSDGRIW--TGA 216 (293)
Q Consensus 161 K~~~~p~~~~-----s~e~~~---------~~~~~l~~~~~~f~---~~Va~~R~~~~~-----~~~~~~~g~~~--~~~ 216 (293)
+-..+- .+. |++--+ .+.+.+......|. +.|.++|.+-.. +++-+.++.+- .-+
T Consensus 359 ~i~lng-~dvt~~IRs~eVs~~vS~vA~~p~VR~~l~~~QR~~a~~~g~V~eGRDIGTVVfPdA~lK~fLtAs~e~RA~R 437 (512)
T PRK13477 359 RVWING-EDVTEAIRSPEVTSSVSAIAAQPCVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVEERARR 437 (512)
T ss_pred EEEECC-EEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCEEEEEECCHHHHHHH
T ss_conf 899888-5706655447889999998397989999999999984659999979987666778999669998999999999
Q ss_pred HHHH---CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9987---798062389899999999741877653012014421124556511047787888888876303
Q gi|254780747|r 217 EAKK---VGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTK 283 (293)
Q Consensus 217 ~A~~---~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (293)
+.+| .|. ...++++.++.+.++......+.+-+..+..+-..-...+......++..+.+..+..
T Consensus 438 R~~el~~~g~--~~~s~~~i~~~I~~RD~~D~~R~~sPL~~A~DAi~IDTs~lsieeVv~kI~~l~~~ki 505 (512)
T PRK13477 438 RALDLEAQGF--PVIDLEELEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRDRI 505 (512)
T ss_pred HHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999996688--8789999999999861431447768886589848998999999999999999999753
No 399
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.43 E-value=60 Score=13.31 Aligned_cols=154 Identities=12% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEC-CCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCCCCCCC--CCCCCC-
Q ss_conf 99999999986189987999975-8888-888999999999998414786799603323--3223210001--110001-
Q gi|254780747|r 51 QELIERIERISRDDSATALIVSL-SSPG-GSAYAGEAIFRAIQKVKNRKPVITEVHEMA--ASAGYLISCA--SNIIVA- 123 (293)
Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i-~SpG-G~~~~~~~i~~ai~~~k~~kpvva~~~~~~--~S~~Y~iAs~--ad~I~a- 123 (293)
+-+++..+++. +-.+.. |.| |+.| ..+..+.++..+|++.- +.|+-...++.. +.+.|+-|.- +|-|-.
T Consensus 154 ~yyv~~a~~l~-~~Gad~--I~ikD~aGll~P~~~~eLV~aLk~~~-~lpI~~HtH~t~Gla~an~laAieAGaDivD~a 229 (463)
T PRK12331 154 DYFVKLAKEMQ-EIGADS--ICIKDMAGILTPYVAYELVKCIKENV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (463)
T ss_pred HHHHHHHHHHH-HCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999-649988--99867867768899999999999744-985699836887579999999998499999623
Q ss_pred -CHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH---HHHHCCC
Q ss_conf -30135345556530210245677742042255315521123466-678999988777776666677899---9985149
Q gi|254780747|r 124 -AETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF-SEVNPKAVQMMQDVVDSSYHWFVR---LVSESRN 198 (293)
Q Consensus 124 -~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~-~~~s~e~~~~~~~~l~~~~~~f~~---~Va~~R~ 198 (293)
+|.|. ....|....+...+.- .++ ..+..+....+.....++.+.+.. .....++
T Consensus 230 ~~~~s~------gtsqP~~~s~v~~l~~--------------~~~~~~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~ 289 (463)
T PRK12331 230 ISPFAG------GTSQPATESMVIALQD--------------LGYDTGLDLEELSEIAEYFNPIRDHYREEGILNPKVKD 289 (463)
T ss_pred CCCCCC------CCCCCCHHHHHHHHHC--------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 535467------9789879999999853--------------89999989999999999999999999874478875766
Q ss_pred CCHHHHHHHHCCCCCC--HHHHHHCCCCCCCC
Q ss_conf 9988998873498237--88998779806238
Q gi|254780747|r 199 IPYDKTLVLSDGRIWT--GAEAKKVGLIDVVG 228 (293)
Q Consensus 199 ~~~~~~~~~~~g~~~~--~~~A~~~GLvD~ig 228 (293)
.+.+-..--.=|..+| -.|+.++|+.|+..
T Consensus 290 ~d~~v~~hq~PGGm~snl~~Ql~~~g~~dr~~ 321 (463)
T PRK12331 290 VEPKTLIYQVPGGMLSNLLSQLKEQGLADKYE 321 (463)
T ss_pred CCHHHEEECCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 77435123687306678999999778476799
No 400
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.42 E-value=60 Score=13.31 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC---CCCEEE-EECCCC---CCCCCCCCCCC--C
Q ss_conf 69999999998618-99879999758888888999999999998414---786799-603323---32232100011--1
Q gi|254780747|r 50 SQELIERIERISRD-DSATALIVSLSSPGGSAYAGEAIFRAIQKVKN---RKPVIT-EVHEMA---ASAGYLISCAS--N 119 (293)
Q Consensus 50 ~~~l~~~l~~a~~d-~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~---~kpvva-~~~~~~---~S~~Y~iAs~a--d 119 (293)
.+.+.+.|+.+.+. |..++|++.-..+.+.. .+.|-..++++++ .+||+. ...++. .++||..+..+ +
T Consensus 72 ~~kL~~~I~~~~~~yP~~k~I~V~tTC~seiI--GDDi~~v~~~~~~e~~~~~vi~v~tpgf~g~~~~~G~~~~~~~~~~ 149 (415)
T cd01977 72 EKKLKKNIIEAFKEFPDIKRMTVYTTCTTALI--GDDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWIN 149 (415)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH--CCCHHHHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999985799656999767708876--4689999999876448996799426110674312588999999999
Q ss_pred CCC--CCHH-HH---HHHHH---HHHCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 000--1301-35---34555---653021024567774204225531
Q gi|254780747|r 120 IIV--AAET-SL---VGSIG---VLFQYPYVKPFLDKLGVSIKSVKS 157 (293)
Q Consensus 120 ~I~--a~p~-s~---vGsiG---v~~~~~~~~~ll~k~gi~~~~~~~ 157 (293)
+.. +.|. .. +..+| ......-++++|+.+||++...-.
T Consensus 150 ~~~~~~~p~~~~~~~vNiig~~~~~gd~~eikrll~~~Gi~v~~~~~ 196 (415)
T cd01977 150 QKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFT 196 (415)
T ss_pred HHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 97253587768998168837988855289999999975995799717
No 401
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=20.09 E-value=61 Score=13.26 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=10.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99975888888899999999999841
Q gi|254780747|r 69 LIVSLSSPGGSAYAGEAIFRAIQKVK 94 (293)
Q Consensus 69 ivL~i~SpGG~~~~~~~i~~ai~~~k 94 (293)
++|+=-+-|-++....++.+.|++++
T Consensus 142 LiLDEPTsgLD~~~~~~i~~li~~L~ 167 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLR 167 (251)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99809864689999999999999999
No 402
>pfam00681 Plectin Plectin repeat. This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Probab=20.05 E-value=61 Score=13.26 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHCCCCCCC
Q ss_conf 982378899877980623
Q gi|254780747|r 210 GRIWTGAEAKKVGLIDVV 227 (293)
Q Consensus 210 g~~~~~~~A~~~GLvD~i 227 (293)
|.-++-++|++.||+|.=
T Consensus 19 g~rlsv~~A~~~glid~~ 36 (45)
T pfam00681 19 GERLSVEEAVRRGLIDPE 36 (45)
T ss_pred CCEECHHHHHHCCCCCHH
T ss_conf 988189999996994999
No 403
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=20.02 E-value=45 Score=14.09 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=22.3
Q ss_pred HHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 65302102456777420422553155211234666789999887
Q gi|254780747|r 134 VLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQM 177 (293)
Q Consensus 134 v~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~ 177 (293)
.+|..-..++.-+++|++..+-+.|..-.. .++|+|+-+.
T Consensus 179 TYMAaeaL~~aak~~g~~ikVETqGs~G~~----n~LT~e~I~~ 218 (638)
T PRK09765 179 TYMAAEYLEKAGRKLGVNVYVEKQGANGIE----GRLTADQLNS 218 (638)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCCHHHHHH
T ss_conf 999999999999983985899746876778----8899999985
Done!