HHsearch alignment for GI: 254780747 and conserved domain: pfam00574
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=99.68 E-value=1.5e-15 Score=117.87 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=119.1
Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293)
Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293)
T Consensus 18 ii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~--~~V~Ti~~G~aaS~aslI~~a 95 (182)
T pfam00574 18 IIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PDVSTICLGLAASMGSFLLAA 95 (182)
T ss_pred EEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCHHHC
T ss_conf 899898436899999999999985629699989999899967899999999998479--984899920361455320102
Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
T Consensus 96 G~~g~R~~~p~s~~M------iHq------------~~~~~~G------------~~~di~~~~~~l~~~~~~i~~~ya~ 145 (182)
T pfam00574 96 GTKGKRFALPNARIM------IHQ------------PLGGAQG------------QASDIEIQAEEILKIRERLNEIYAE 145 (182)
T ss_pred CCCCCEEECCCCCEE------EEC------------CCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 677744456570102------563------------6546664------------8999999999999999999999998
Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCC
Q ss_conf 1499988998873498-237889987798062389
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGG 229 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~ 229 (293)
T Consensus 146 ~tg~~~~~i~~~~~~d~~lta~EA~~~GliD~Ii~ 180 (182)
T pfam00574 146 HTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIE 180 (182)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf 86949999999850783246999998399868505