HHsearch alignment for GI: 254780747 and conserved domain: pfam00574

>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=99.68  E-value=1.5e-15  Score=117.87  Aligned_cols=158  Identities=23%  Similarity=0.278  Sum_probs=119.1

Q ss_pred             EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9997666238--69999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
T Consensus        18 ii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~--~~V~Ti~~G~aaS~aslI~~a   95 (182)
T pfam00574        18 IIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PDVSTICLGLAASMGSFLLAA   95 (182)
T ss_pred             EEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCHHHC
T ss_conf             899898436899999999999985629699989999899967899999999998479--984899920361455320102


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
T Consensus        96 G~~g~R~~~p~s~~M------iHq------------~~~~~~G------------~~~di~~~~~~l~~~~~~i~~~ya~  145 (182)
T pfam00574        96 GTKGKRFALPNARIM------IHQ------------PLGGAQG------------QASDIEIQAEEILKIRERLNEIYAE  145 (182)
T ss_pred             CCCCCEEECCCCCEE------EEC------------CCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             677744456570102------563------------6546664------------8999999999999999999999998


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCC
Q ss_conf             1499988998873498-237889987798062389
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGG  229 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~  229 (293)
T Consensus       146 ~tg~~~~~i~~~~~~d~~lta~EA~~~GliD~Ii~  180 (182)
T pfam00574       146 HTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIE  180 (182)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf             86949999999850783246999998399868505