HHsearch alignment for GI: 254780747 and conserved domain: pfam01039

>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=91.80  E-value=1  Score=24.43  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999986189987999975888888-------89999999999984147867996033233223210001110001
Q gi|254780747|r   51 QELIERIERISRDDSATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA  123 (293)
Q Consensus        51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a  123 (293)
T Consensus        79 ~Ki~~~~e~A~~~-~lP-~v~l~dsgG~r~~eg~~~l~~~g~i~~~~~~~s~~iP~is~v~G~~~GggA~~~~~sd~~im  156 (487)
T pfam01039        79 FKITRAMELAIKE-GEP-LIGINDSGGARIQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIM  156 (487)
T ss_pred             HHHHHHHHHHHHC-CCC-EEEEEECCCEECCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCEEEE
T ss_conf             4479999999985-995-89998242403476313045311799999997499988999537886368888760871588


Q ss_pred             CHH-HHHHHHH
Q ss_conf             301-3534555
Q gi|254780747|r  124 AET-SLVGSIG  133 (293)
Q Consensus       124 ~p~-s~vGsiG  133 (293)
T Consensus       157 ~~~~s~l~~aG  167 (487)
T pfam01039       157 VKGTSPMFLTG  167 (487)
T ss_pred             ECCCCCEECCC
T ss_conf             21764332248