PSIBLAST alignment of GI: 254780747 and protein with PDB id: 3bez
>gi|163311059|pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593
>gi|163311060|pdb|3BEZ|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 14/271 (5%)
Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
D + + G I D +E +I D A+++ ++SPGGS
Sbjct: 294 KTPADTGDSIGVVFANGAIXDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353
Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
A E I + + KPV+ AAS GY IS +N IVA ++L GSIG+
Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSXGGXAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413
Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
V+ LD +GV V +SP+ S + P+A Q +++ Y F+ LV+++R+
Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLXXQLSIENGYKRFITLVADARH 472
Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
++ ++ G +WTG +AK GL+D +G ++ L ++ + +
Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531
Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
+ N S S + +P Q + A
Sbjct: 532 FDKVXDNXSGS--VRAXLPDAFQAXLPAPLA 560