RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780747|ref|YP_003065160.1| putative protease IV
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
         (293 letters)



>gnl|CDD|129789 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type.  The
           member of this family from Bacillus subtilis was shown
           to have properties consistent with a role in degrading
           signal peptides after cleavage from precursor proteins,
           although it was not demonstrated conclusively.
          Length = 207

 Score =  167 bits (424), Expect = 4e-42
 Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 1/195 (0%)

Query: 38  VARIAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           +A + + G I  S E   ++I+RI  D S  AL++ ++SPGG+  A E I+  ++K+K +
Sbjct: 2   IAILPVSGAIAVSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAK 61

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
           KPV+  +  +AAS GY I+ A++ IVA   ++ GSIGV+ Q   V+   +KLG+  + +K
Sbjct: 62  KPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIK 121

Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
           S   K   SP  E+ P+   ++Q++V+ SY  FV++V++ RN+P +     +DGR++TG 
Sbjct: 122 SGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGR 181

Query: 217 EAKKVGLIDVVGGQE 231
           +A K+ L+D +G ++
Sbjct: 182 QALKLRLVDKLGTED 196


>gnl|CDD|162004 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type.  E.
           coli SohB, which is most closely homologous to the
           C-terminal duplication of SppA, is predicted to perform
           a similar function of small peptide degradation, but in
           the periplasm. Many prokaryotes have a single SppA/SohB
           homolog that may perform the function of either or both.
          Length = 584

 Score =  138 bits (348), Expect = 2e-33
 Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 33  DNSPHVARIAIRGQI---EDSQELI--ERIERISR----DDSATALIVSLSSPGGSAYAG 83
           D    +  + + G I    D++     + +  + R    D    A+++ ++SPGGS +A 
Sbjct: 305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS 364

Query: 84  EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I R + + + R KPVI  +  MAAS GY I+ A++ IVA+  ++ GSIGV    P  +
Sbjct: 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFE 424

Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
             LD++GV +  V +  + A  S    +  +   +MQ  V++ Y  F+ +VS  RN+   
Sbjct: 425 NSLDRIGVHVDGVSTHEL-ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPT 483

Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
           +   ++ GR+WTG +A   GL+D +GG +E
Sbjct: 484 QVDKVAQGRVWTGEDAVSNGLVDALGGLDE 513



 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 14/207 (6%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           I + + D     L+  LS+  G        I  A+ + K+    +       +   Y ++
Sbjct: 85  IRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLA 144

Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173
             ++ I+      V   G   +  + K  LDKLGV     +    K    PFS  +++P+
Sbjct: 145 SFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPE 204

Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV---GLID 225
           A +  Q  +   +  ++  VS +R IP  +    + G +       G  A+      L+ 
Sbjct: 205 ARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVT 264

Query: 226 VVGGQEEVWQSLYAL---GVDQSIRKI 249
            V    E  ++L  L     D++   I
Sbjct: 265 AVCSYAEAGKALKFLFEDDYDKAKNFI 291


>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
          Length = 618

 Score =  109 bits (274), Expect = 1e-24
 Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%)

Query: 33  DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
           D    +A I   G I D +E            +I     D    A+++ ++SPGGS  A 
Sbjct: 323 DTGGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS 382

Query: 84  EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           E I   +   +   KPV+  +  MAAS GY IS  +N IVA+ ++L GSIG+      V+
Sbjct: 383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVE 442

Query: 143 PFLDKLGVSIKSVKSSPM------KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
             LD +GV    V +SP+      KA P  F        QMMQ  +++ Y  F+ LV++S
Sbjct: 443 NSLDSIGVHTDGVSTSPLADVSITKALPPEFQ-------QMMQLSIENGYKRFITLVADS 495

Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           R+   ++   ++ G +WTG +AK  GL+D +G
Sbjct: 496 RHKTPEQIDKIAQGHVWTGQDAKANGLVDSLG 527


>gnl|CDD|183309 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
          Length = 330

 Score = 59.8 bits (146), Expect = 7e-10
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 70  IVSLSSPGG--SAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISCASNIIVAA 124
           ++ L SPGG    Y G A   A Q  + R    P+   V ++AAS GY+++C ++ I+AA
Sbjct: 127 LLRLESPGGVVHGY-GLA---ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182

Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
             ++VGSIGV+ Q P     L K  + ++   +   K   + F E   +  +  ++ ++ 
Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEE 242

Query: 185 SYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
           ++  F   V   R  +  DK    + G  W G +A ++GL+D + 
Sbjct: 243 THQLFKDFVQRYRPQLDIDKV---ATGEHWYGQQALELGLVDEIQ 284


>gnl|CDD|183589 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit;
           Reviewed.
          Length = 207

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 40  RIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
            I + GQ++D       +Q L+  +E I  D   T  I   +SPGGS  AG+AI+  IQ 
Sbjct: 37  IIFLGGQVDDASANDVMAQLLV--LESIDPDRDITLYI---NSPGGSVTAGDAIYDTIQF 91

Query: 93  VKNRKPVITEVHEMAASAGYLISCA 117
           ++    V T     AASAG ++  A
Sbjct: 92  IRP--DVQTVCTGQAASAGAVLLAA 114


>gnl|CDD|184720 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit;
           Provisional.
          Length = 197

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 41  IAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
           I I G+I  +++L E  +     +   DS   + V + S GG   AG AIF  I+ VK  
Sbjct: 26  IVIAGEI--NKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVK-- 81

Query: 97  KPVITEVHEMAASAGYLISCAS 118
             V T    + ASA  LI  A+
Sbjct: 82  PKVFTIGVGLVASAAALIFLAA 103


>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit;
           Provisional.
          Length = 221

 Score = 37.2 bits (86), Expect = 0.006
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 31/158 (19%)

Query: 71  VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           + ++SPGGS YAG  I+  +Q + +   V T    MAAS       AS ++VA      G
Sbjct: 89  IYINSPGGSVYAGLGIYDTMQFISS--DVATICTGMAASM------ASVLLVA------G 134

Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
           + G     P+ +  + +           P+       S++   A + +Q +    Y    
Sbjct: 135 TKGKRSALPHSRVMIHQ-----------PLGGAQGQASDIEITARE-IQKLKKELY---- 178

Query: 191 RLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
            ++++    P+DK    SD   W T  EAK+ G+ID V
Sbjct: 179 TIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEV 216


>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
          Length = 266

 Score = 36.8 bits (86), Expect = 0.007
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 29/110 (26%)

Query: 52  ELIERIERISRDDSATALIVSLSSPGGSAYAG---------------EAIFR-------A 89
            L   ++ I+ D S     V L++ G +  AG                A+F        A
Sbjct: 42  ALQAALDAIAADPSVRV--VVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA 99

Query: 90  IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV---LF 136
           I  +   +PVI  VH +A +AG  +  + ++ VAA+T+     GV   LF
Sbjct: 100 IVAL--PQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLF 147


>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
           protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
           Members of this family resemble PhnN of phosphonate
           utilization operons, where different such operons confer
           the ability to use somewhat different profiles of C-P
           bond-containing compounds (see PubMed:15231805),
           including phosphites as well as phosphonates. PhnN in E.
           coli shows considerable homology to guanylate kinases
           (EC 2.7.4.8), and has actually been shown to act as a
           ribose 1,5-bisphosphokinase (PRPP forming). This
           suggests an analogous kinase reaction for phosphonate
           metabolism, converting
           5-phosphoalpha-1-(methylphosphono)ribose to
           methylphosphono-PRPP.
          Length = 179

 Score = 36.2 bits (84), Expect = 0.009
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 15/91 (16%)

Query: 4   VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV--ARIAIRGQIEDSQELIERIERIS 61
           VL + + RY  L +V +T             SP V   R+A RG+ E  +E+ ER+ R +
Sbjct: 101 VLPEARQRYPNLLVVNITA------------SPDVLAQRLAARGR-ESREEIEERLARSA 147

Query: 62  RDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
           R  +A A + ++ + G    AGE + R ++K
Sbjct: 148 RFAAAPADVTTIDNSGSLEVAGETLLRLLRK 178


>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit;
           Reviewed.
          Length = 200

 Score = 35.5 bits (83), Expect = 0.015
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 75  SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           SPGGS  AG AI+  +Q +K    V T     AAS G  +  A
Sbjct: 70  SPGGSVTAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAA 110


>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit;
           Reviewed.
          Length = 196

 Score = 34.8 bits (80), Expect = 0.029
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 63  DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
           +D    + + ++SPGGS Y G  IF  +Q VK    V T    +AAS G  + CA
Sbjct: 52  EDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA 104


>gnl|CDD|129584 TIGR00493, clpP, ATP-dependent Clp protease, proteolytic subunit
           ClpP.  This model for the proteolytic subunit ClpP has
           been rebuilt to a higher stringency. In every bacterial
           genome with the ClpXP machine, a ClpP protein will be
           found that scores with this model. In general, this ClpP
           member will be encoded adjacent to the clpX gene, as
           were all examples used in the seed alignment. A large
           fraction of genomes have one or more additional ClpP
           paralogs, sometimes encoded nearby and sometimes
           elsewhere. The stringency of the trusted cutoff used
           here excludes the more divergent ClpP paralogs from
           being called authentic ClpP by this model.
          Length = 191

 Score = 34.4 bits (79), Expect = 0.035
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 41  IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
           I + G++ DS    ++ ++  +  +D    + + ++SPGGS  AG AI+  +Q +K    
Sbjct: 29  IFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIK--PD 86

Query: 99  VITEVHEMAASAG-YLISC 116
           V T     AAS G +L+S 
Sbjct: 87  VSTICIGQAASMGAFLLSA 105


>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
           hydratase paaB.  This family of proteins are found
           within apparent operons for the degradation of
           phenylacetic acid. These proteins contain the enoyl-CoA
           hydratase domain as detected by pfam00378. This activity
           is consistent with current hypotheses for the
           degradation pathway which involve the ligation of
           phenylacetate with coenzyme A (paaF), hydroxylation
           (paaGHIJK), ring-opening (paaN) and degradation of the
           resulting fatty acid-like compound to a Krebs cycle
           intermediate (paaABCDE).
          Length = 256

 Score = 34.1 bits (78), Expect = 0.047
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 52  ELIERIERISRDDSATALIVS-----------LS----SPGGSAYAGEAIFRAIQKVKNR 96
           EL E +ER+ RDD A AL+++           LS    +PGG+   G  I      +  R
Sbjct: 30  ELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRR 88

Query: 97  -----KPVITEVHEMAASAGYLISCASNIIVAAETS 127
                 PV+  V+ +AA AG  ++ A +I++AAE++
Sbjct: 89  LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA 124


>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
          Length = 263

 Score = 32.4 bits (74), Expect = 0.14
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 190 VRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLI 224
           VRLV   R IPY     +L  GR  T AEAK++GLI
Sbjct: 150 VRLV---RQIPYTVACDLLLTGRHITAAEAKEIGLI 182


>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
          Length = 249

 Score = 31.9 bits (73), Expect = 0.19
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
           I+ +      TALI         A  G  A FRA+ +     PVI  VH      G  + 
Sbjct: 64  IKELQATPGFTALI--------DANRGCFAAFRAVYE--CAVPVIAAVHGFCLGGGIGLV 113

Query: 116 CASNIIVAAE 125
             +++IVA++
Sbjct: 114 GNADVIVASD 123


>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
          Length = 257

 Score = 31.6 bits (72), Expect = 0.23
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           KPVI  V+  A  AG  +  + +IIVA+E ++ G
Sbjct: 98  KPVIAAVNGPALGAGLGLVASCDIIVASENAVFG 131


>gnl|CDD|181356 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
          Length = 288

 Score = 31.5 bits (72), Expect = 0.24
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAE 125
            KP I +V     + G +++   ++IVA++
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASD 147


>gnl|CDD|184721 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit;
           Provisional.
          Length = 201

 Score = 31.1 bits (70), Expect = 0.35
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 31/156 (19%)

Query: 73  LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
           ++ PGG  YAG AI+  ++ +K   PV T    +A S G ++  A            G  
Sbjct: 64  INCPGGEVYAGLAIYDTMRYIK--APVSTICVGIAMSMGSVLLMA------------GDK 109

Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
           G     P  +  + +     +           +P  EV  K V  ++D +   YH     
Sbjct: 110 GKRMALPNSRIMIHQGSAGFRG---------NTPDLEVQAKEVLFLRDTLVDIYH----- 155

Query: 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227
                ++P++K L  +      +  EAK  GLID V
Sbjct: 156 --RHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSV 189


>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
          Length = 266

 Score = 31.1 bits (71), Expect = 0.35
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 26/117 (22%)

Query: 34  NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAI 86
           N P   R A+    +    L+     I+ D S  A+I++ +    S+        A    
Sbjct: 19  NRPE-TRNALSDN-DAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGA 76

Query: 87  F------------RAIQKVKN-----RKPVITEVHEMAASAGYLISCASNIIVAAET 126
           F              IQ++         PVI  V+  A  AG  ++C  +I +A+ET
Sbjct: 77  FGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET 133


>gnl|CDD|165533 PHA03276, PHA03276, envelope glycoprotein K; Provisional.
          Length = 337

 Score = 30.6 bits (69), Expect = 0.42
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 10/44 (22%)

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
           V++  H+M A A YL++ A  ++ +          VL +YPY K
Sbjct: 147 VVSPAHKMVAPATYLLNYAGRVVSS----------VLLRYPYTK 180


>gnl|CDD|181250 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
          Length = 262

 Score = 30.7 bits (70), Expect = 0.43
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 26/100 (26%)

Query: 51  QELIERIERISRDDSATALIVS-----------LS----SPGGSAY-AGEAI-------F 87
           +EL E ++++  DD A AL+++           L+    +PGG+    GE+I        
Sbjct: 34  RELREALDQV-EDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLV 92

Query: 88  RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
           R ++ +    PVI  V+ +AA AG  ++ A +I++AA ++
Sbjct: 93  RRLRAL--PLPVIAAVNGVAAGAGANLALACDIVLAARSA 130


>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
          Length = 259

 Score = 30.8 bits (70), Expect = 0.44
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           KP+I  V+ +A   G+ ++ A ++IVAAE +
Sbjct: 95  KPIIAAVNGVAMGGGFELALACDLIVAAENA 125


>gnl|CDD|178476 PLN02888, PLN02888, enoyl-CoA hydratase.
          Length = 265

 Score = 30.1 bits (68), Expect = 0.63
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 31  VEDNSPHVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSP----GGS 79
           V  +   +A I I R +  ++       EL    +R+  DDS   +I++ S      G  
Sbjct: 13  VPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVD 72

Query: 80  AYAGEAIFRA----------IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
             A E +F+            Q  + RKP+I  ++  A +AG+ I+ A +I+VA+ 
Sbjct: 73  LTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASR 128


>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
          Length = 260

 Score = 30.0 bits (68), Expect = 0.69
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAE 125
           KPVI  V   AA AG+ ++ A +++VAA 
Sbjct: 99  KPVIAAVEGAAAGAGFSLALACDLLVAAR 127


>gnl|CDD|180658 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
          Length = 259

 Score = 30.2 bits (69), Expect = 0.72
 Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 51  QELIERIERISRDDSATALIVS---------------LSSPGGSAYAGEAIFRAIQKVKN 95
           Q L + +E  + D +   ++++                 +P         + R ++ +  
Sbjct: 35  QALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAA 94

Query: 96  -RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
             KPV+  V+  A   G  ++ A +++ A+E++   
Sbjct: 95  LPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFS 130


>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
          Length = 277

 Score = 29.9 bits (68), Expect = 0.81
 Identities = 8/31 (25%), Positives = 19/31 (61%)

Query: 97  KPVITEVHEMAASAGYLISCASNIIVAAETS 127
           +P+I  V  + A AG +++ AS++ +   ++
Sbjct: 114 QPIIAAVDGVCAGAGAILAMASDLRLGTPSA 144


>gnl|CDD|178753 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
           Provisional.
          Length = 278

 Score = 29.5 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
           RL             +L  GR+   AEAK++GLID V
Sbjct: 157 RLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEV 193


>gnl|CDD|180336 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
          Length = 266

 Score = 29.3 bits (66), Expect = 1.2
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 74  SSPGGSAYAGEAIF----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
            S G +  A E  +    R ++ +    P++T V+  AA  G   +   ++I+ A ++
Sbjct: 79  DSGGDAGAALETAYHPFLRRLRNLP--CPIVTAVNGPAAGVGMSFALMGDLILCARSA 134


>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
          Length = 260

 Score = 29.3 bits (66), Expect = 1.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 83  GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           G  +FR ++ +   KPVI  ++  A   G  +S A +I +A+E +  G
Sbjct: 86  GNKVFRKLENLD--KPVIAAINGFALGGGCELSMACDIRIASEKAKFG 131


>gnl|CDD|180010 PRK05318, PRK05318, deoxyguanosinetriphosphate
           triphosphohydrolase-like protein; Provisional.
          Length = 432

 Score = 29.1 bits (66), Expect = 1.3
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 248 KIKDWNPPKNYWFCDLKNL 266
           K  DW PPK  +  D    
Sbjct: 185 KASDWKPPKGIFDDDQDIF 203


>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
          Length = 261

 Score = 28.9 bits (65), Expect = 1.8
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 79  SAYAGEAI--------FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125
           +A  GEA         F  + ++ +  KPVI  V+  A   G+ ++ A++ IV A+
Sbjct: 68  AAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAD 123


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 28.9 bits (65), Expect = 1.8
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 9/47 (19%)

Query: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
           ++T V  +A S GYLISCA +      TS+  ++G     P+V PFL
Sbjct: 478 LVTLVANVATSFGYLISCAFS-----STSMALTVGP----PFVIPFL 515


>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
          Length = 249

 Score = 28.5 bits (64), Expect = 2.0
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 30/129 (23%)

Query: 27  WSSHVEDNSPHVARIAI-----RGQI--EDSQELIERIERISRDDSATALIVS------- 72
               + D    VA I +     R  +  E S +L   +     D    AL+V+       
Sbjct: 2   MDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFC 61

Query: 73  ----LSS----PGGSAYAG-EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122
               L++    PG  A  G   I+     V +   P I  V+  A  AG       N+ +
Sbjct: 62  AGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGL------NLAL 115

Query: 123 AAETSLVGS 131
           AA+  + G 
Sbjct: 116 AADVRIAGP 124


>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
          Length = 257

 Score = 28.4 bits (64), Expect = 2.1
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 37/133 (27%)

Query: 27  WSSHVEDNSPHVARIAI---------RGQIEDSQELIERIERISRDDSATALIVS----- 72
            S  VED   HVA I +            +    EL E ++++ +DD+   +++      
Sbjct: 4   LSVRVED---HVAVITLNHPPANALSSQVLH---ELSELLDQVEKDDNVRVVVIHGEGRF 57

Query: 73  ----------LSSPGGSAYA-----GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
                      S             G+  F  ++K    KPVI  +H  A   G  ++ +
Sbjct: 58  FSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFS--KPVIAAIHGAALGGGLELAMS 115

Query: 118 SNIIVAAETSLVG 130
            +I  A E++ +G
Sbjct: 116 CHIRFATESAKLG 128


>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
          Length = 254

 Score = 28.0 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
           RKP+I  V   A + G+ ++ A ++IVAA  +  G
Sbjct: 91  RKPLIAAVEGYALAGGFELALACDLIVAARDAKFG 125


>gnl|CDD|135772 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
          Length = 269

 Score = 27.7 bits (62), Expect = 3.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
            R +  AEA ++GL+  V   +++  +L
Sbjct: 174 ARRFDAAEALRIGLVHRVTAADDLETAL 201


>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
          Length = 327

 Score = 27.4 bits (61), Expect = 4.1
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%)

Query: 37  HVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA--------- 80
            +A+I I R +  ++      +EL       +RDDS+  +I+ L+  G  A         
Sbjct: 76  GIAKITINRPERRNAFRPRTVKELQRAFND-ARDDSSVGVII-LTGKGTKAFCSGGDQAV 133

Query: 81  -----YAG-EAIFR------AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
                Y G +   R       IQ  +  KPVI  V   A   G+++    ++ +AA+ ++
Sbjct: 134 RGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193

Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
            G  G     P V  F    G SI +      KA
Sbjct: 194 FGQTG-----PKVGSFDAGYGSSIMARLVGQKKA 222


>gnl|CDD|180238 PRK05756, PRK05756, pyridoxamine kinase; Validated.
          Length = 286

 Score = 27.5 bits (62), Expect = 4.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 48  EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
               E+++ I  I       A+   LS   GSA  GEAI  A+++VK   P
Sbjct: 57  SHLTEIVQGIADIGWLGECDAV---LSGYLGSAEQGEAILDAVRRVKAANP 104


>gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional.
          Length = 456

 Score = 27.2 bits (60), Expect = 4.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
           VRL SE+        L L+ G    G +   +G+     G EE++ + + LGVD  I   
Sbjct: 47  VRLTSETLK------LALAKGLQDAGVDVLDIGM----SGTEEIYFATFHLGVDGGIEVT 96

Query: 250 KDWNP 254
              NP
Sbjct: 97  ASHNP 101


>gnl|CDD|181223 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA
           polymerase III subunit epsilon; Validated.
          Length = 928

 Score = 27.2 bits (61), Expect = 5.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 18/65 (27%)

Query: 143 PFLDKL-GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
           PF+ +L G+S + VK +P       F +V P+ V++++         FV     + N+ +
Sbjct: 52  PFITELTGISEEMVKQAP------LFEDVAPEIVELLEGAY------FV-----AHNVHF 94

Query: 202 DKTLV 206
           D   +
Sbjct: 95  DLNFL 99


>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
          Length = 298

 Score = 26.8 bits (59), Expect = 6.0
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 78  GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
                    F AI +    KPVI +VH          +  ++I++A++ +++G+
Sbjct: 96  ARETGPTQKFMAIWRAS--KPVIAQVHGWCVGGASDYALCADIVIASDDAVIGT 147


>gnl|CDD|180869 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
          Length = 301

 Score = 26.8 bits (60), Expect = 6.2
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 22/96 (22%)

Query: 53  LIERIERISRDDSATALIVSLSSPGG----SAYAGEA----IFRAIQKVKNRKPVITEVH 104
            +E     +R+   TA+++   + GG     A AG A    I RAI  ++   PVI  + 
Sbjct: 95  ALELAAEDNRNGIPTAVLLLFET-GGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLI- 152

Query: 105 EMAASAG------YLISCASNIIVAAETSLVGSIGV 134
                 G         +  S +IV+ E    G +G+
Sbjct: 153 --GGRVGCFGGMGIAAALCSYLIVSEE----GRLGL 182


>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
          Length = 251

 Score = 26.3 bits (58), Expect = 8.6
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 57  IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
            E+I  D SA  +++  S PG        +F A   +K R+ +  +EV +   S
Sbjct: 31  FEKIQADASARVVMLRSSVPG--------VFCAGADLKERRKMSPSEVQKFVNS 76


>gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein]
           dehydratase FabZ.  This enzyme, FabZ, shows overlapping
           substrate specificity with FabA with regard to chain
           length in fatty acid biosynthesis. FabZ works
           preferentially on shorter chains and is often designated
           (3R)-hydroxymyristoyl-[acyl carrier protein]
           dehydratase, although its actual specificity is broader.
           Unlike FabA, FabZ does not function as an isomerase and
           cannot initiate unsaturated fatty acid biosynthesis.
           However, only FabZ can act during the elongation of
           unsaturated fatty acid chains.
          Length = 140

 Score = 26.5 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 67  TALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVI 100
              ++++ S GG    G+   F  I K K R+PV+
Sbjct: 65  AGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99


>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
          Length = 255

 Score = 26.5 bits (59), Expect = 9.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 96  RKPVITEVHEMAASAGYLISCASNIIVAAET 126
            KP++  V     + G  +  A++I+VAA+ 
Sbjct: 92  SKPLVVAVQGYCLTLGIELMLAADIVVAADN 122


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,674,202
Number of extensions: 289384
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 54
Length of query: 293
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 200
Effective length of database: 3,984,929
Effective search space: 796985800
Effective search space used: 796985800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)