RPSBLAST alignment of GI: 254780747 and protein with PDBid: 3bf0

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593

 Score =  125 bits (315), Expect = 1e-29
 Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 34  NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
           N   +     +G +        +I     D    A+++ ++SPGGS  A E I   +   
Sbjct: 309 NGAIMDGEETQGNV-GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA 367

Query: 94  KNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
           +   KPV+  +  MAAS GY IS  +N IVA  ++L GSIG+      V+  LD +GV  
Sbjct: 368 RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHT 427

Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
             V +SP+  + S    + P+A  MMQ  +++ Y  F+ LV+++R+   ++   ++ G +
Sbjct: 428 DGVSTSPLA-DVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHV 486

Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYW--FCDLKNLSIS 269
           WTG +AK  GL+D +G  ++       L  V Q    ++ +     ++    D  + S+ 
Sbjct: 487 WTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQ--WHLEYYVDEPTFFDKVMDNMSGSVR 544

Query: 270 SLLEDTIPLMKQTKVQGLW 288
           ++L D    M    +  + 
Sbjct: 545 AMLPDAFQAMLPAPLASVA 563