BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780747|ref|YP_003065160.1| putative protease IV
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
(293 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 293
Score = 598 bits (1542), Expect = e-173, Method: Compositional matrix adjust.
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI
Sbjct: 1 MEFVLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERI 60
Query: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI
Sbjct: 61 SRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNI 120
Query: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD
Sbjct: 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180
Query: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL
Sbjct: 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
Query: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP
Sbjct: 241 GVDQSIRKIKDWNPPKNYWFCDLKNLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 216
Score = 30.8 bits (68), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 41 IAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
+ + GQIED + ++ + ++ + + ++SPGG AG AI+ +Q +K P
Sbjct: 45 VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PP 102
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
+ T AAS G L+ A G G+ F P + L +
Sbjct: 103 ISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQ 139
>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 430
Score = 29.3 bits (64), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 30 HVEDNSPHVARIAIRGQIEDSQELIERIERI-SRDDSATALIVSLSSPGGSAYAGEAIFR 88
H+E S ++ + + +I LI++IE I +R +S +A I + G + +A+
Sbjct: 22 HLEPQSEYILSLDEKNRI-----LIKKIEDIRARRNSNSAQIGQAIAEGNLSLV-DALKN 75
Query: 89 AIQKVKNRKPVI-TEVHEMAASAGYLISCASNIIV--------AAETSLVGSIG 133
+K + P++ E HE+ +S LISC N+ + A E L+ S+G
Sbjct: 76 ETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVG 129
>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
Length = 665
Score = 26.2 bits (56), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVL 207
QDV +S H++ +SE R+I +D L L
Sbjct: 377 QDVFESMKHFYEFGLSEGRDITFDSYLYL 405
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 25.8 bits (55), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 167 FSEVNPKAVQMMQDVVDSSYHW----FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
+SE + + +QD++DS W V++ ES + P D + S +G E ++V
Sbjct: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS----LSGGEKRRVA 166
Query: 223 L 223
L
Sbjct: 167 L 167
>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 222 GLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCD 262
GL+ V E LY G D + ++ D WFC+
Sbjct: 61 GLVSVFYKDSEATLMLYKYGADYAFDRVAD-------WFCE 94
>gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 116
Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 144 FLDKLGVSIKSVKSSPMKAEP 164
FLDK G+ +S +++P K++P
Sbjct: 76 FLDKAGLIKRSPQNNPKKSQP 96
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 113 LISCASNIIVAAETSLVGSIGVLFQYPY 140
L+ C S + +E +++G +L YP+
Sbjct: 262 LLICRSGALTVSEIAVIGRPAILVPYPH 289
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 23.1 bits (48), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 223 LIDVVGGQEEVWQSLYAL 240
+ID++ +E+ W+ L+AL
Sbjct: 155 IIDIIETEEKKWEDLHAL 172
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 22.3 bits (46), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 205 LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIK 250
L+ D ++ + A KV +VVG EE+W+ L + + RK++
Sbjct: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,048
Number of Sequences: 1233
Number of extensions: 6866
Number of successful extensions: 38
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 15
length of query: 293
length of database: 328,796
effective HSP length: 73
effective length of query: 220
effective length of database: 238,787
effective search space: 52533140
effective search space used: 52533140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)