HHsearch alignment for GI: 254780748 and conserved domain: TIGR00987
>TIGR00987 himA integration host factor, alpha subunit; InterPro: IPR005684 Integration host factor (IHF) is a heterodimeric protein consisting of alpha and beta (IPR005685 from INTERPRO) subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=99.82 E-value=2.3e-20 Score=150.93 Aligned_cols=94 Identities=29% Similarity=0.586 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
T Consensus 2 LT~~~~sE~~f~~~-GLs~~ea~~LVE~~~~~~~~AL~~gE~VKlS~FG~F~~RDK~~R~GRNPKTGEeiPI~~RRV~~F 80 (96)
T TIGR00987 2 LTKAELSEALFREL-GLSKREAKELVELFLEEIRDALERGEQVKLSGFGNFDLRDKTQRPGRNPKTGEEIPITARRVVTF 80 (96)
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 50557889999982-88855778999999999999986388465303655210107778765579988788677413532
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
T Consensus 81 RP~~~lK~RV~~~~~ 95 (96)
T TIGR00987 81 RPGQKLKDRVEERNA 95 (96)
T ss_pred CCCHHHHHHHHHHCC
T ss_conf 764568899875158