HHsearch alignment of GI: 254780748 and MMDB domain: 1b8z_A_
>1b8z_A (A:) Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima}
Probab=99.90 E-value=4.2e-24 Score=174.30 Aligned_cols=90 Identities=47% Similarity=0.707 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.|++++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.++||+|||.+.+|++++|+|
T Consensus 1 Mtk~eli~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~~fG~F~v~~~~~r~~~np~tge~i~i~~k~~v~F 79 (90)
T 1b8z_A 1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKF 79 (90)
T ss_dssp CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999854-98999999999999999999987288637466578988613544445799998898638721899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|++.||
T Consensus 80 k~sk~Lk~~in 90 (90)
T 1b8z_A 80 KPGKALKEKVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 73899998639