HHsearch alignment of GI: 254780748 and MMDB domain: 1b8z_A_

>1b8z_A (A:) Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima}
Probab=99.90  E-value=4.2e-24  Score=174.30  Aligned_cols=90  Identities=47%  Similarity=0.707  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.|++++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.++||+|||.+.+|++++|+|
T Consensus         1 Mtk~eli~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~~fG~F~v~~~~~r~~~np~tge~i~i~~k~~v~F   79 (90)
T 1b8z_A            1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKF   79 (90)
T ss_dssp             CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEE
T ss_conf             97899999999854-98999999999999999999987288637466578988613544445799998898638721899


Q ss_pred             CCCHHHHHHHC
Q ss_conf             26989999707
Q gi|254780748|r   81 RAGKNLKERLN   91 (100)
Q Consensus        81 k~sk~lk~~iN   91 (100)
                      +||+.|++.||
T Consensus        80 k~sk~Lk~~in   90 (90)
T 1b8z_A           80 KPGKALKEKVK   90 (90)
T ss_dssp             EECHHHHHHHC
T ss_pred             EECHHHHHHHC
T ss_conf             73899998639