HHsearch alignment of GI: 254780748 and MMDB domain: 1p71_A_
>1p71_A (A:) DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP}
Probab=99.92 E-value=6.6e-25 Score=179.38 Aligned_cols=94 Identities=31% Similarity=0.592 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|+.|+|+|||+|+++.+++|.|+||+|||.+.||++++|+|
T Consensus 1 MtK~eli~~ia~~~-~ls~~~v~~~i~~~~~~i~~~L~~~~~V~l~~fG~F~v~~~~~r~~~Np~Tge~i~i~~~~~v~F 79 (94)
T 1p71_A 1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF 79 (94)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEECCCEEECCCCCCEEEECCCCCEEE
T ss_conf 98899999999845-97999999999999999999986488605035269999983672328979997899648740899
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
+||+.|+++||+..+
T Consensus 80 kpsk~lk~~in~~~a 94 (94)
T 1p71_A 80 SAGKLFREKVAPPKA 94 (94)
T ss_dssp EECHHHHHHHSCCCC
T ss_pred ECCHHHHHHHCCCCC
T ss_conf 549899997577899