HHsearch alignment of GI: 254780748 and MMDB domain: 2iie_A_
>2iie_A (A:) Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=99.87 E-value=1.4e-22 Score=164.58 Aligned_cols=92 Identities=30% Similarity=0.578 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|+.|.|+|||+|+++.+++|.++||+|||.+.+|++++|+|
T Consensus 47 MtK~eLi~~ia~~~-glskk~a~~ii~~~~~~I~e~L~~g~~V~l~gfGtF~v~~r~~R~~rNP~Tge~i~i~~kk~vkF 125 (204)
T 2iie_A 47 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 125 (204)
T ss_dssp BCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBCCBCTTTCCBCCBCCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 35999999999986-97999999999999999999996699256511589999876471123889998898648651799
Q ss_pred CCCHHHHHHHCCC
Q ss_conf 2698999970786
Q gi|254780748|r 81 RAGKNLKERLNSP 93 (100)
Q Consensus 81 k~sk~lk~~iN~~ 93 (100)
+||+.|+..+|..
T Consensus 126 k~~k~LK~iveaL 138 (204)
T 2iie_A 126 RPGQKLKSRVENA 138 (204)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHCC
T ss_conf 9547999886413