HHsearch results for GI: 254780748 and protein with PDBid: 1p71_A
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=99.93 E-value=4.5e-26 Score=185.78 Aligned_cols=94 Identities=31% Similarity=0.592 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||..||+++ ++++++++.++|+|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eLi~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (94)
T 1p71_A 1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF 79 (94)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 98899999999855-96999999999999999999985499667137169999984580204869998898648730898
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
+||+.|+++||++.+
T Consensus 80 k~sk~lk~~vN~~ka 94 (94)
T 1p71_A 80 SAGKLFREKVAPPKA 94 (94)
T ss_dssp EECHHHHHHHSCCCC
T ss_pred ECCHHHHHHHCCCCC
T ss_conf 159899997676889