HHSEARCH alignment of GI: 254780748 and SCOP domain: d1mula_

Alignment
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=5e-25  Score=177.67  Aligned_cols=90  Identities=36%  Similarity=0.573  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|+|++.|.++|..|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus         1 M~K~eli~~ia~~~-~ltk~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~F   79 (90)
T d1mula_           1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF   79 (90)
T ss_dssp             CCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECC--------------CCEEEEEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCEEEECCCCCCEEEECCCCCEEE
T ss_conf             97899999999704-96999999999999999999997299728657248999853761118889998899648641799


Q ss_pred             CCCHHHHHHHC
Q ss_conf             26989999707
Q gi|254780748|r   81 RAGKNLKERLN   91 (100)
Q Consensus        81 k~sk~lk~~iN   91 (100)
                      +||+.|+++|.
T Consensus        80 kpsk~LK~~vk   90 (90)
T d1mula_          80 VSGKALKDAVK   90 (90)
T ss_dssp             EECHHHHHHHC
T ss_pred             EECHHHHHHHC
T ss_conf             72899998629


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli [TaxId: 562]