HHSEARCH alignment of GI: 254780748 and SCOP domain: d2o97b1

Alignment

Probab=99.92  E-value=5.5e-26  Score=183.74  Aligned_cols=90  Identities=38%  Similarity=0.627  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus         1 M~K~eLi~~ia~~~-~l~~~~~~~~v~~~~~~i~~~L~~~~~v~l~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F   79 (90)
T d2o97b1           1 MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSF   79 (90)
T ss_dssp             CBHHHHHHHHHHTT-C-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC------------------CEEEE
T ss_pred             CCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCEEECCCCCCEEEECCCCEEEE
T ss_conf             97899999999720-98999999999999999999997398173242279999850464008899997899528722899


Q ss_pred             CCCHHHHHHHC
Q ss_conf             26989999707
Q gi|254780748|r   81 RAGKNLKERLN   91 (100)
Q Consensus        81 k~sk~lk~~iN   91 (100)
                      +||+.|++.||
T Consensus        80 kpsk~lk~~lN   90 (90)
T d2o97b1          80 RAGKALKDAVN   90 (90)
T ss_dssp             EECHHHHHHCC
T ss_pred             ECCHHHHHHHC
T ss_conf             54999997539

SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli, beta-isoform [TaxId: 562]