RPSBLAST alignment for GI: 254780748 and conserved domain: TIGR00988

>gnl|CDD|130061 TIGR00988, hip, integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU. Length = 94
 Score =  106 bits (267), Expect = 1e-24
 Identities = 43/94 (45%), Positives = 55/94 (58%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M KS LI  IA +   L  +DVE  V  +LE M  ALA G R+EIRGFGSFS+  RA R 
Sbjct: 1  MTKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSFSLHYRAPRT 60

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
           R P     + ++ K VP F+ GK L++R N  +
Sbjct: 61 GRNPKTGDSVELDGKYVPHFKPGKELRDRANIYE 94