RPSBLAST alignment for GI: 254780748 and conserved domain: TIGR00988
>gnl|CDD|130061 TIGR00988, hip, integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU. Length = 94
Score = 106 bits (267), Expect = 1e-24
Identities = 43/94 (45%), Positives = 55/94 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L +DVE V +LE M ALA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + ++ K VP F+ GK L++R N +
Sbjct: 61 GRNPKTGDSVELDGKYVPHFKPGKELRDRANIYE 94