RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780748|ref|YP_003065161.1| integration host factor, beta
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (100 letters)



>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB)
          {Escherichia coli [TaxId: 562]}
          Length = 94

 Score = 87.2 bits (216), Expect = 3e-19
 Identities = 39/91 (42%), Positives = 51/91 (56%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M KS LI  +A +   +  + VE  V  +LE M   LA G R+ IRGFGSFS+  RA R 
Sbjct: 1  MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
           R P     + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91


>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
          Length = 94

 Score = 79.5 bits (196), Expect = 8e-17
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M K  L+  +A+K   +  +  + ++   LE + +A+++G +V + GFGSF  R+R AR 
Sbjct: 1  MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKARE 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
           R P   + + +    VP F AGK  +E++  P +
Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLFREKVAPPKA 94


>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus
          [TaxId: 1422]}
          Length = 90

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M K+ LI  +A+ +  L+ +D  K V+ + + +T+AL  G +V++ GFG+F VR+RAAR 
Sbjct: 1  MNKTELINAVAETS-GLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARK 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
           R P   + + +    VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAV 89


>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
          Length = 90

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M K+ LI  IA+K  +L+    +  +   L  +T++L  G  V++ GFG+F V  RA R 
Sbjct: 1  MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
           R P   K I +    VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89


>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit
          (IHFA) {Escherichia coli [TaxId: 562]}
          Length = 96

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          + K+ +   +  K   L+ +D +++V +  EE+ +AL NG +V++ GFG+F +R +  R 
Sbjct: 2  LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 60

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
           R P   + I +  + V  FR G+ LK R+ +
Sbjct: 61 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 92


>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
          beta-isoform [TaxId: 562]}
          Length = 90

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M KS LI  IA     ++     + ++ ++  +T++L  G  V + GFG+F+V++RAAR 
Sbjct: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
           R P   K I++    VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90


>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId:
          2336]}
          Length = 90

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M K  LI  +AKK      +DV+ I++ +LE +T+ALA G +V+I GFGSF VRK AAR 
Sbjct: 1  MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARK 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
             P  +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKV 89


>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage
          SPO1 [TaxId: 10685]}
          Length = 99

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          M K+ LI  IA+    L    V K++    + +T+ +A G +V++ GF +     R AR 
Sbjct: 1  MNKTELIKAIAQD-TGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARK 59

Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
             P  Q+ + +   +    + G++LK+   
Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKAAE 90


>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio
          cholerae [TaxId: 666]}
          Length = 191

 Score = 27.9 bits (61), Expect = 0.27
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50
          +I+S L          L+       +    + +  +   GG+V   G G 
Sbjct: 5  LIRSELTEAADVLQKFLSDDHNIAQIEAAAKLIADSFKQGGKVLSCGNGG 54


>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 198

 Score = 26.0 bits (57), Expect = 0.97
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 3  KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44
           S  +   ++K P   ++ V ++V  ++       A G   +
Sbjct: 25 TSLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPD 66


>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
           [TaxId: 4530]}
          Length = 145

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 53  VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
           +   A R  R     K +   EK+  F      LK++  
Sbjct: 109 LAAWARRCGRIDSVVKHLPSPEKVYDFVGV---LKKKYG 144


>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply
          {Listeria phage A500 [TaxId: 40522]}
          Length = 148

 Score = 25.0 bits (54), Expect = 1.5
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 10 IAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
          I K N KLN   + KI +     + + +A  G + +     +        L
Sbjct: 9  IEKANRKLNAGGMYKITSDKTRNVIKKMAKEG-IYLCVAQGYRSTAEQNAL 58


>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated
          protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 25.1 bits (53), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 1  MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31
          M  + L+  + K + KL+     K+V M+L+
Sbjct: 22 MATNDLMTELQKDSIKLDDDSERKVVKMILK 52


>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 195

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 2  IKSSLIGTIAKKNPKLNYQDVEKIVN 27
           K+ ++   A+   +  ++D  K+VN
Sbjct: 18 FKALVLIAFAQYLQQCPFEDHVKLVN 43


>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 221

 Score = 24.8 bits (54), Expect = 2.2
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNL 86
          R+    L  KV+S  E      + G  +
Sbjct: 3  RVRLPSLLDKVMSAAE-AADLIQDGMTV 29


>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 196

 Score = 24.5 bits (53), Expect = 2.3
 Identities = 4/42 (9%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 3  KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44
          +++L+    KK P+++   + ++       + +  +   +  
Sbjct: 16 QNALLVRYTKKVPQVSTPTLVEVS----RNLGKVGSKCCKHP 53


>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 192

 Score = 24.5 bits (53), Expect = 2.9
 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 3  KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN 39
          K+  +  ++++ PK  + +V K+V     ++T+    
Sbjct: 16 KAWAVARLSQRFPKAEFAEVSKLV----TDLTKVHTE 48


>d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 190

 Score = 24.1 bits (52), Expect = 2.9
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 3  KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA 36
          + S +  +A+K P  + +DV  +     E++T  
Sbjct: 18 RLSNLIKLAQKVPTADLEDVLPLA----EDITNI 47


>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia
           coli [TaxId: 562]}
          Length = 219

 Score = 24.0 bits (51), Expect = 3.4
 Identities = 11/78 (14%), Positives = 28/78 (35%)

Query: 1   MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
            +  + +GT+ ++  +    D +  +         AL    R +  G  ++ +  R    
Sbjct: 117 FLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNP 176

Query: 61  ARAPLAQKVISVEEKMVP 78
             A  A   +   +++V 
Sbjct: 177 LIALAADITLVEPDELVE 194


>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 262

 Score = 24.1 bits (52), Expect = 3.6
 Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 4   SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51
           ++L+G +  +N         + V  ++ ++ ++L      E      F
Sbjct: 59  TTLVGLLNARNYNF----GGEFVEAMIRQLKESLKANNYNEAVYLVRF 102


>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
           yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
           4932]}
          Length = 412

 Score = 23.8 bits (50), Expect = 3.7
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 23  EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
            ++V  L E     L   GR  I G    +V   A  +   
Sbjct: 367 PQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEV 407


>d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also
           known as Triticum tauschii [TaxId: 37682]}
          Length = 138

 Score = 23.7 bits (50), Expect = 4.0
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 53  VRKRAARLARAPLAQKVISVEEKMVPFFRA 82
           +     R      A+  +    +++ F +A
Sbjct: 106 LAAWVERFIELDAAKAALPDVGRLLEFAKA 135


>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Escherichia coli [TaxId: 562]}
          Length = 397

 Score = 23.8 bits (50), Expect = 4.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 23  EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
              V+ L EE    L   GR+ + G  + +V++ A   A 
Sbjct: 356 AAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395


>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein
          ProX {Escherichia coli [TaxId: 562]}
          Length = 309

 Score = 23.8 bits (50), Expect = 4.6
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 16 KLNYQDVEKIVNMLLEEMTQALANG 40
          KL Y  V K   +       +LA+G
Sbjct: 33 KLGY-TVNKPSEVDYNVGYTSLASG 56


>d1pprm1 a.131.1.1 (M:1-156) Peridinin-chlorophyll protein
           {Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
          Length = 156

 Score = 23.4 bits (50), Expect = 5.7
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 3   KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA- 61
               +    K  P    + ++K++ M      + L        +  GS S        A 
Sbjct: 25  NGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRAD 84

Query: 62  ----RAPLAQKVISVEEKMV 77
                A L + + SV E MV
Sbjct: 85  WDNVNAALGRVIASVPENMV 104


>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase
          MJ1247 {Archaeon Methanococcus jannaschii [TaxId:
          2190]}
          Length = 177

 Score = 23.2 bits (49), Expect = 6.1
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%)

Query: 30 LEEMTQALANGGRVEIRGFGS--FSVRKRAARLARAPLAQKVISVEEKMVPF 79
          L+ +   +    ++ I G G   +  R  A RL         +         
Sbjct: 27 LDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYE 78


>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 23.1 bits (48), Expect = 6.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 19  YQDVEKIVNMLLEEMTQALA 38
            +D + I ++++ +M Q L+
Sbjct: 187 VEDRQLITDLVISKMNQLLS 206


>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
           dehydrogenase {Pseudomonas putida [TaxId: 303]}
          Length = 353

 Score = 23.0 bits (48), Expect = 6.9
 Identities = 6/34 (17%), Positives = 17/34 (50%)

Query: 22  VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
           V++++ +L  ++ + LA  G  +I       ++ 
Sbjct: 319 VDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.344 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,064
Number of extensions: 15402
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 32
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)