RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter asiaticus str. psy62] (100 letters) >d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]} Length = 94 Score = 87.2 bits (216), Expect = 3e-19 Identities = 39/91 (42%), Positives = 51/91 (56%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M KS LI +A + + + VE V +LE M LA G R+ IRGFGSFS+ RA R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 R P + +E K VP F+ GK L++R N Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]} Length = 94 Score = 79.5 bits (196), Expect = 8e-17 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M K L+ +A+K + + + ++ LE + +A+++G +V + GFGSF R+R AR Sbjct: 1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKARE 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95 R P + + + VP F AGK +E++ P + Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLFREKVAPPKA 94 >d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]} Length = 90 Score = 79.1 bits (195), Expect = 1e-16 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M K+ LI +A+ + L+ +D K V+ + + +T+AL G +V++ GFG+F VR+RAAR Sbjct: 1 MNKTELINAVAETS-GLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARK 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90 R P + + + VP F+ GK LK+ + Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAV 89 >d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]} Length = 90 Score = 77.5 bits (191), Expect = 3e-16 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R Sbjct: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90 R P K I + VP F +GK LK+ + Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]} Length = 96 Score = 77.6 bits (191), Expect = 3e-16 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 + K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R Sbjct: 2 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 60 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92 R P + I + + V FR G+ LK R+ + Sbjct: 61 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 92 >d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]} Length = 90 Score = 76.8 bits (189), Expect = 5e-16 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR Sbjct: 1 MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 R P K I++ VP FRAGK LK+ +N Sbjct: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90 >d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]} Length = 90 Score = 74.8 bits (184), Expect = 2e-15 Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M K LI +AKK +DV+ I++ +LE +T+ALA G +V+I GFGSF VRK AAR Sbjct: 1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARK 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90 P +K I++ E+ VP F+ GK LKE++ Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKV 89 >d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]} Length = 99 Score = 74.1 bits (182), Expect = 3e-15 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 M K+ LI IA+ L V K++ + +T+ +A G +V++ GF + R AR Sbjct: 1 MNKTELIKAIAQD-TGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARK 59 Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 P Q+ + + + + G++LK+ Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKAAE 90 >d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Length = 191 Score = 27.9 bits (61), Expect = 0.27 Identities = 9/50 (18%), Positives = 17/50 (34%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50 +I+S L L+ + + + + GG+V G G Sbjct: 5 LIRSELTEAADVLQKFLSDDHNIAQIEAAAKLIADSFKQGGKVLSCGNGG 54 >d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 198 Score = 26.0 bits (57), Expect = 0.97 Identities = 7/42 (16%), Positives = 17/42 (40%) Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44 S + ++K P ++ V ++V ++ A G + Sbjct: 25 TSLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPD 66 >d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} Length = 145 Score = 25.4 bits (55), Expect = 1.4 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%) Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 + A R R K + EK+ F LK++ Sbjct: 109 LAAWARRCGRIDSVVKHLPSPEKVYDFVGV---LKKKYG 144 >d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]} Length = 148 Score = 25.0 bits (54), Expect = 1.5 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 10 IAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 I K N KLN + KI + + + +A G + + + L Sbjct: 9 IEKANRKLNAGGMYKITSDKTRNVIKKMAKEG-IYLCVAQGYRSTAEQNAL 58 >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Score = 25.1 bits (53), Expect = 1.8 Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 M + L+ + K + KL+ K+V M+L+ Sbjct: 22 MATNDLMTELQKDSIKLDDDSERKVVKMILK 52 >d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens) [TaxId: 9606]} Length = 195 Score = 24.9 bits (54), Expect = 1.8 Identities = 6/26 (23%), Positives = 14/26 (53%) Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVN 27 K+ ++ A+ + ++D K+VN Sbjct: 18 FKALVLIAFAQYLQQCPFEDHVKLVN 43 >d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 221 Score = 24.8 bits (54), Expect = 2.2 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNL 86 R+ L KV+S E + G + Sbjct: 3 RVRLPSLLDKVMSAAE-AADLIQDGMTV 29 >d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Score = 24.5 bits (53), Expect = 2.3 Identities = 4/42 (9%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44 +++L+ KK P+++ + ++ + + + + Sbjct: 16 QNALLVRYTKKVPQVSTPTLVEVS----RNLGKVGSKCCKHP 53 >d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Score = 24.5 bits (53), Expect = 2.9 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN 39 K+ + ++++ PK + +V K+V ++T+ Sbjct: 16 KAWAVARLSQRFPKAEFAEVSKLV----TDLTKVHTE 48 >d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Score = 24.1 bits (52), Expect = 2.9 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA 36 + S + +A+K P + +DV + E++T Sbjct: 18 RLSNLIKLAQKVPTADLEDVLPLA----EDITNI 47 >d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Length = 219 Score = 24.0 bits (51), Expect = 3.4 Identities = 11/78 (14%), Positives = 28/78 (35%) Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 + + +GT+ ++ + D + + AL R + G ++ + R Sbjct: 117 FLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNP 176 Query: 61 ARAPLAQKVISVEEKMVP 78 A A + +++V Sbjct: 177 LIALAADITLVEPDELVE 194 >d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Score = 24.1 bits (52), Expect = 3.6 Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51 ++L+G + +N + V ++ ++ ++L E F Sbjct: 59 TTLVGLLNARNYNF----GGEFVEAMIRQLKESLKANNYNEAVYLVRF 102 >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 Score = 23.8 bits (50), Expect = 3.7 Identities = 10/41 (24%), Positives = 14/41 (34%) Query: 23 EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63 ++V L E L GR I G +V A + Sbjct: 367 PQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEV 407 >d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} Length = 138 Score = 23.7 bits (50), Expect = 4.0 Identities = 4/30 (13%), Positives = 11/30 (36%) Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRA 82 + R A+ + +++ F +A Sbjct: 106 LAAWVERFIELDAAKAALPDVGRLLEFAKA 135 >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 Score = 23.8 bits (50), Expect = 4.3 Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 23 EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62 V+ L EE L GR+ + G + +V++ A A Sbjct: 356 AAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395 >d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]} Length = 309 Score = 23.8 bits (50), Expect = 4.6 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%) Query: 16 KLNYQDVEKIVNMLLEEMTQALANG 40 KL Y V K + +LA+G Sbjct: 33 KLGY-TVNKPSEVDYNVGYTSLASG 56 >d1pprm1 a.131.1.1 (M:1-156) Peridinin-chlorophyll protein {Dinoflagellate (Amphidinium carterae) [TaxId: 2961]} Length = 156 Score = 23.4 bits (50), Expect = 5.7 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA- 61 + K P + ++K++ M + L + GS S A Sbjct: 25 NGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRAD 84 Query: 62 ----RAPLAQKVISVEEKMV 77 A L + + SV E MV Sbjct: 85 WDNVNAALGRVIASVPENMV 104 >d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177 Score = 23.2 bits (49), Expect = 6.1 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%) Query: 30 LEEMTQALANGGRVEIRGFGS--FSVRKRAARLARAPLAQKVISVEEKMVPF 79 L+ + + ++ I G G + R A RL + Sbjct: 27 LDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYE 78 >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 Score = 23.1 bits (48), Expect = 6.2 Identities = 5/20 (25%), Positives = 13/20 (65%) Query: 19 YQDVEKIVNMLLEEMTQALA 38 +D + I ++++ +M Q L+ Sbjct: 187 VEDRQLITDLVISKMNQLLS 206 >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 Score = 23.0 bits (48), Expect = 6.9 Identities = 6/34 (17%), Positives = 17/34 (50%) Query: 22 VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55 V++++ +L ++ + LA G +I ++ Sbjct: 319 VDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQN 352 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.130 0.344 Gapped Lambda K H 0.267 0.0438 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 350,064 Number of extensions: 15402 Number of successful extensions: 90 Number of sequences better than 10.0: 1 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 32 Length of query: 100 Length of database: 2,407,596 Length adjustment: 62 Effective length of query: 38 Effective length of database: 1,556,336 Effective search space: 59140768 Effective search space used: 59140768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.6 bits)