RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
(108 letters)
>gnl|CDD|173256 PRK14795, PRK14795, lipoprotein signal peptidase; Provisional.
Length = 158
Score = 108 bits (273), Expect = 2e-25
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60
MLS + LV+I + +IAF+ ++W + + +G+ LI GA+GN++D +YGYVI
Sbjct: 57 MLSGMHGWGLVAITLAVIAFVLWLWWRTAPDRVFARLGFALIIGGAIGNLIDRFMYGYVI 116
Query: 61 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKG 102
DYI+ HT TWSFAVFNLAD FI+IG +II ++++ +++
Sbjct: 117 DYILFHTPTWSFAVFNLADSFITIGAGLIILEELLGWRKERR 158
>gnl|CDD|178992 PRK00376, lspA, lipoprotein signal peptidase; Reviewed.
Length = 160
Score = 77.5 bits (192), Expect = 6e-16
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 13 IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72
I I I + ++ ++ + + +I Y LI GALGN++D ++G+V+D+I + W F
Sbjct: 74 IAIGISVVLVYLLYRSKALQKLNNIAYALILGGALGNLIDRLVHGFVVDFIDFYWGNWHF 133
Query: 73 AVFNLADLFISIGTCIIIYD 92
FNLAD I IG ++I D
Sbjct: 134 PAFNLADSAICIGAVLLILD 153
>gnl|CDD|184820 PRK14785, PRK14785, lipoprotein signal peptidase; Provisional.
Length = 171
Score = 64.8 bits (158), Expect = 4e-12
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH-TQTWSFA 73
+++ F+ KK P+ + +G L+ GA+GN++D L+G+VID+I +H W +
Sbjct: 83 LIMSLFLIVYLKKAPRQAKLLSLGLALVLGGAIGNLIDRLLHGHVIDFIHVHYADVWHYP 142
Query: 74 VFNLADLFISIGTCIIIYDDIILQHRQK 101
+FN+AD+ I +G +I+ D + L+ ++
Sbjct: 143 IFNIADIGICVGVALIVIDMLFLEKKRN 170
>gnl|CDD|184824 PRK14796, PRK14796, lipoprotein signal peptidase; Provisional.
Length = 161
Score = 63.5 bits (155), Expect = 1e-11
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 8 TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67
+LV+++ IW T+ + I LI GA+GN +D YG V D++++H
Sbjct: 68 WLLVAVKAAAAVA-LAIWMARSTTR-LAAIALGLIIGGAIGNAIDRLAYGAVFDFVLLHA 125
Query: 68 QTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
T+S+ VFNLAD I G ++YD + K
Sbjct: 126 GTYSWYVFNLADAAIVAGVAGLLYDSLFGAPAAK 159
>gnl|CDD|184822 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.
Length = 146
Score = 62.3 bits (152), Expect = 3e-11
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
IL++I I+I+ I++I K P +K ++ I LI +GA+GN++D YGYV+D+I H +
Sbjct: 60 ILITI-IVILGLIYYIIKYKPTSK-LYKISLSLIISGAIGNLIDRIRYGYVVDFIDFHFK 117
Query: 69 TWSFAVFNLADLFISIGTCIIIY 91
+ F VFN+AD+ + +GT ++
Sbjct: 118 DYYFPVFNVADILVVVGTILLAI 140
>gnl|CDD|173234 PRK14773, PRK14773, lipoprotein signal peptidase; Provisional.
Length = 192
Score = 59.9 bits (145), Expect = 1e-10
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 18 IAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH---TQTWSFAV 74
+AFI ++K + + + L+ GA+GN VD GYVID+I + +
Sbjct: 105 VAFILHYYRKLRQEQRYLQVALALVLGGAVGNFVDRLARGYVIDFIEWYWWNRPDIRWPT 164
Query: 75 FNLADLFISIGTCIIIYD 92
FN+AD I +G +++
Sbjct: 165 FNVADSLIVVGVAMLVLH 182
>gnl|CDD|173231 PRK14770, PRK14770, lipoprotein signal peptidase; Provisional.
Length = 167
Score = 58.3 bits (141), Expect = 4e-10
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 2 LSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61
L + + ++ + + + + P+ +G I GA+GNV+D YG V+D
Sbjct: 67 LGGIGRVVFSAVSLAAVLLLGVWLTRTPRPLVAAALG--AIMGGAIGNVIDRMRYGAVVD 124
Query: 62 YIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
++ H WS+ VFNLAD I G +++ D ++ + +
Sbjct: 125 FLHAHAFGWSWYVFNLADAAIDCGVAVLLIDSLLARRQA 163
>gnl|CDD|184823 PRK14793, PRK14793, lipoprotein signal peptidase; Provisional.
Length = 150
Score = 54.8 bits (132), Expect = 4e-09
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 8 TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67
+ + +++ A + F + K PK K + + LI GALGN+ D G V+D+ +
Sbjct: 58 WFFIPVTVIVCAGVLFFYFKIPKQKWLLRLTLGLIGGGALGNLYDRLRIGKVVDF--LDF 115
Query: 68 QTWSFAVFNLADLFISIGTCIIIYD 92
+ W VFN+AD I IG ++++
Sbjct: 116 RIW--PVFNIADSAIVIGVGLLMWL 138
>gnl|CDD|161694 TIGR00077, lspA, lipoprotein signal peptidase. Alternate name:
lipoprotein signal peptidase.
Length = 166
Score = 54.3 bits (131), Expect = 6e-09
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 13 IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72
+ I I +F + + I +I + LI GALGN +D + G V+D+ + + F
Sbjct: 76 LAIAISLGLFVFLLRYKELFKITNIAFGLIFGGALGNFIDRLVRGGVVDFFDFYFGNYHF 135
Query: 73 AVFNLADLFISIGTCIIIYDDIILQHRQK 101
+FN AD I IG +++ + ++K
Sbjct: 136 PIFNFADSSICIGVILLLLYFFFPKRKKK 164
>gnl|CDD|184825 PRK14797, PRK14797, lipoprotein signal peptidase; Provisional.
Length = 150
Score = 51.5 bits (124), Expect = 5e-08
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
+ I I+++WK K F +G LI G +GN +D GYV+D M H +FA+
Sbjct: 67 LAIGVAIYYLWKHRYK-NIWFLLGLTLIIAGGIGNFIDRLRLGYVVD--MFHLDFINFAI 123
Query: 75 FNLADLFISIGTCIII 90
FN+AD ++++G +++
Sbjct: 124 FNVADSYLTVGVILLL 139
>gnl|CDD|173237 PRK14776, PRK14776, lipoprotein signal peptidase; Provisional.
Length = 170
Score = 50.7 bits (121), Expect = 8e-08
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 37 IGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDII 95
I Y LI GA+GN++D GYV+D + + W + FNLAD+ I +G + + ++
Sbjct: 98 IAYSLILGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSSLL 156
>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 50.1 bits (120), Expect = 1e-07
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
+L I LII F++ + + + ++ LI GALGN+ D G V D+I I+
Sbjct: 69 LLTPIIALIITFLYALKSNDKLS----NLSMGLIGGGALGNLYDRFFLGQVRDFIDIYIG 124
Query: 69 TWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
+ + FN+AD ISIG + I + + R+K
Sbjct: 125 DFHWPAFNIADASISIGIALFILYEHFFKKRKK 157
>gnl|CDD|173251 PRK14790, PRK14790, lipoprotein signal peptidase; Provisional.
Length = 169
Score = 48.3 bits (115), Expect = 4e-07
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
++ + I+ + P + + + LI GALGNV+D GYV+D+I + W F +
Sbjct: 78 VISLGAIYLYRTQLPNRRLLIQVAMGLILGGALGNVIDRIRLGYVVDFIQVG---W-FPI 133
Query: 75 FNLADLFISIGTCII 89
FNLAD I++G ++
Sbjct: 134 FNLADSAITVGAALL 148
>gnl|CDD|184817 PRK14775, PRK14775, lipoprotein signal peptidase; Provisional.
Length = 170
Score = 48.4 bits (115), Expect = 5e-07
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 6 SPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65
S I + + +I +F ++ ++ KS +G ++ GALGN+ D +G V D+I +
Sbjct: 62 SNLIFTYVSLGVILMLFVLFVQSKCNKSTICMG--VVIGGALGNLADRLRFGAVYDFISL 119
Query: 66 HTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKID 105
H + + FN AD+ ++ G +I + + + + K +D
Sbjct: 120 HAGEFHWPAFNFADVCVTCG--VICFLCLEVMYHAKACVD 157
>gnl|CDD|173230 PRK14769, PRK14769, lipoprotein signal peptidase; Provisional.
Length = 156
Score = 48.0 bits (114), Expect = 5e-07
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 7 PTILVSIR-ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65
++V++ ++++A + W++ P + I + GAL NVVD G V DY +
Sbjct: 60 VGVIVAVTAVIVVALAVYAWRRAPTAGWVERIAGGAVIGGALANVVDRARDGLVTDY--L 117
Query: 66 HTQTWSFAVFNLADLFISIGTCII 89
HT W FNLAD F+ G +I
Sbjct: 118 HTGWWP--TFNLADTFLVTGFAVI 139
>gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional.
Length = 157
Score = 47.8 bits (114), Expect = 5e-07
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 3 SNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDY 62
S+ + L+ + + I A + IW + I L+ GAL NV+D +YGYV+D+
Sbjct: 60 SDAARWALIGLALAICAGVV-IWVRRSGGSRWMLISAGLLIGGALANVLDRVIYGYVLDF 118
Query: 63 I-MIHTQTWSFAVFNLADLFISIG 85
+ M + VFNLAD+FI G
Sbjct: 119 LNMSCCGINNPFVFNLADVFIFAG 142
>gnl|CDD|173255 PRK14794, PRK14794, lipoprotein signal peptidase; Provisional.
Length = 136
Score = 45.4 bits (107), Expect = 3e-06
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 10 LVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69
+ I +++ F+ + +N Y LI GA+GN++D GYV+D + +
Sbjct: 39 FIGIAVVVSIFLIKLILENRHKGEAI--AYSLILGGAMGNLIDRVFRGYVVDSFDFYWRD 96
Query: 70 WSFAVFNLADLFISIGTCIII 90
W + FNLAD+ I +G + +
Sbjct: 97 WHWPAFNLADIAIVLGALLFV 117
>gnl|CDD|173239 PRK14778, PRK14778, lipoprotein signal peptidase; Provisional.
Length = 186
Score = 44.8 bits (106), Expect = 5e-06
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 1 MLSNVSPTIL-VSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYV 59
+ SN+S +L + +++ + + + + + +G+IL GALGN++D +GYV
Sbjct: 47 LFSNLSEQVLWTVLFVVVFLSLLPYIFRFSRLERMA-MGFIL--GGALGNLLDRIRFGYV 103
Query: 60 IDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
+D++ T+ +FNLAD+FI +G ++I
Sbjct: 104 LDFL---NLTFLPTIFNLADVFIIVGGALMI 131
>gnl|CDD|173229 PRK14768, PRK14768, lipoprotein signal peptidase; Provisional.
Length = 148
Score = 42.2 bits (99), Expect = 3e-05
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 11 VSIRILIIAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69
+ I + ++A +F ++ N + IF +G ILI +GALGN++D G+V+DY
Sbjct: 59 IFIIVALLATVFGLYYLNTRKVHIFGRLGIILIISGALGNLIDRVRLGFVVDYFDFRV-I 117
Query: 70 WSFAVFNLADLFISIGTCII 89
W + VFN+AD+F+ +GT +
Sbjct: 118 WEY-VFNVADVFVVVGTVFL 136
>gnl|CDD|173248 PRK14787, PRK14787, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 42.3 bits (100), Expect = 3e-05
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 6 SPTILVSIRILIIA--FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI 63
P +L+ + I A + + KN +F + + LI G +GN++D G V+D+I
Sbjct: 58 PPEVLLLLTGAISAGVLWYVLRSKNRTP--LFLLAFGLILGGGIGNLIDRITSGRVVDFI 115
Query: 64 -------MIHTQTWS-FAVFNLADLFISIGTCIII 90
I S + +FN+AD I+IG C+++
Sbjct: 116 YFDLYQGYIFGIWVSLWPIFNIADSAITIGACMLL 150
>gnl|CDD|184815 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional.
Length = 174
Score = 42.0 bits (99), Expect = 4e-05
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
+++++ ++II F K + I + I GA GN++D L GYV+D+ I+ +
Sbjct: 71 LVITVAVVIIMAFVFFKLPATKKYNPLHIILVFIVAGAAGNLIDRILNGYVVDF--IYFK 128
Query: 69 TWSFAVFNLADLFISIGTCIII 90
+F +FN+AD+++++ T + I
Sbjct: 129 LINFPIFNVADIYVTVSTFLFI 150
>gnl|CDD|173253 PRK14792, PRK14792, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 41.5 bits (98), Expect = 5e-05
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 8 TILVSIRILI--IAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIM 64
TIL+ + L+ I I++IW+K P I+ + + G LGN +D GYVID++
Sbjct: 65 TILLGLLSLLVSIGLIYWIWRKKPL--PIWQLLALAFLLGGTLGNGIDRWRLGYVIDFLN 122
Query: 65 IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
+ +F +FN+AD+ I+I I D I + K
Sbjct: 123 L--VPINFPIFNIADIAINIAVICFIIDLIKNRRGSK 157
>gnl|CDD|184814 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.
Length = 209
Score = 40.0 bits (94), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 37 IGYILITTGALGNVVDHC------LYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
+G LI GALGN+VD L G+V+D++ + W + VFN+AD I G +++
Sbjct: 124 LGLGLILGGALGNLVDRFFRAPGPLRGHVVDFLSVG---W-WPVFNVADSAIVCGAILLV 179
>gnl|CDD|173242 PRK14781, PRK14781, lipoprotein signal peptidase; Provisional.
Length = 153
Score = 40.2 bits (94), Expect = 1e-04
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
++I A ++++ PK + G L+ GA+GN +D V+DY+ H+ W F
Sbjct: 68 LIIAALLWYLTSSAPKMSRLSRAGAALLLGGAVGNFIDRLDGRGVVDYL--HS-GW-FPT 123
Query: 75 FNLADLFISIGTCIII 90
FNLAD+F++ G +++
Sbjct: 124 FNLADVFVTTGVALLV 139
>gnl|CDD|173247 PRK14786, PRK14786, lipoprotein signal peptidase; Provisional.
Length = 154
Score = 40.0 bits (93), Expect = 1e-04
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
I++ A I+++ K + F + +I GALGN++D YV D++ ++ +
Sbjct: 66 IVVGALIYYLIKILKTGEVAFKLSLAIIIGGALGNLIDRVRLNYVTDFLDF--TLINYPI 123
Query: 75 FNLADLFISIGTCIIIY 91
FNLAD+F+ G ++ Y
Sbjct: 124 FNLADVFVVSGVVMLSY 140
>gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional.
Length = 185
Score = 39.6 bits (92), Expect = 2e-04
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 10 LVSIRILIIAFIF-FIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI-MIHT 67
LV + + I A+++ ++W+ P + G L+ GALGNVVD LYG V D++ M
Sbjct: 67 LVIVSLAISAWVWRWVWRSTPTRLARISGG--LLIGGALGNVVDRVLYGAVADFLNMSCC 124
Query: 68 QTWSFAVFNLADLFISIG 85
+ FN+AD+ I G
Sbjct: 125 GIENPYAFNVADIAIFAG 142
>gnl|CDD|173238 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional.
Length = 184
Score = 39.1 bits (91), Expect = 2e-04
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
+LV + +L+ + + + P+ + LI GA+GN +D +G V D M+H+
Sbjct: 92 LLVGLGLLV----YLLRRPQPR---FLTVVLSLIAAGAIGNAIDGLRFGRVTD--MLHSP 142
Query: 69 TWS----------FAVFNLADLFISIGTCIIIY 91
S F +FNLAD+ + GT ++++
Sbjct: 143 ALSAVTRALGQGDFPIFNLADMCVVGGTLLLLF 175
>gnl|CDD|184819 PRK14784, PRK14784, lipoprotein signal peptidase; Provisional.
Length = 160
Score = 34.1 bits (78), Expect = 0.009
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 9 ILVSIRILIIAFI-FFIWKKNPKTKSIFDIGYI-LITTGALGNVVDHCLYGYVIDYIMIH 66
I S+ +I+A FFI KK P + + + +I G +GN++D GYV D+I
Sbjct: 64 IAASVLGVILAMTAFFIRKKLPFLDTRPGLIALGVILAGTVGNLIDRVRLGYVTDFI--- 120
Query: 67 TQTWSFAVFNLADLFISIG 85
+ F FN+AD +++G
Sbjct: 121 -RVGDFPTFNIADSCLTVG 138
>gnl|CDD|173233 PRK14772, PRK14772, lipoprotein signal peptidase; Provisional.
Length = 190
Score = 33.3 bits (76), Expect = 0.013
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 41 LITTGALGNVVDHCL------YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCII 89
L+ GALGN+ D G+V+D+I Q +FA+FN+AD + G II
Sbjct: 114 LLLGGALGNLTDRLFREPSFGMGHVVDFI----QLPNFAIFNIADSAVVSGVVII 164
>gnl|CDD|173250 PRK14789, PRK14789, lipoprotein signal peptidase; Provisional.
Length = 191
Score = 32.7 bits (74), Expect = 0.020
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 41 LITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
+I G L N+VD GYV+D+I Q + VFNLAD I+IG + + I +
Sbjct: 98 MIFGGGLSNLVDRIRQGYVVDFI----QFGWWPVFNLADSAITIGVAALAFHIIFIGEEP 153
Query: 101 KG 102
Sbjct: 154 AP 155
>gnl|CDD|184821 PRK14788, PRK14788, lipoprotein signal peptidase; Provisional.
Length = 200
Score = 31.1 bits (71), Expect = 0.061
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKS--IFDIGYILITTGALGNVVDHCLYGYVID 61
L RI+ + I + K K S I LI GA+GN++D YG + D
Sbjct: 62 FLTLFRIVAVGGIGYYLWKLVKKNSSKGLIICISLILAGAIGNIIDSVFYGVIFD 116
>gnl|CDD|184816 PRK14771, PRK14771, lipoprotein signal peptidase; Provisional.
Length = 165
Score = 28.2 bits (63), Expect = 0.51
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 11/52 (21%)
Query: 45 GALGNVVDHCLY------GYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
GALGN++D +Y G V+D++ + ++V N+AD+F+ I ++
Sbjct: 105 GALGNLIDRVMYAQGFLNGKVVDFL-----NYGWSVGNVADIFLMIAGIALV 151
>gnl|CDD|173227 PRK14766, PRK14766, lipoprotein signal peptidase; Provisional.
Length = 201
Score = 27.5 bits (61), Expect = 0.86
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 27/96 (28%)
Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVV--------DHCLYGYVIDYIMIH 66
L I FIF KK + I ++ G+ GN++ + +YG V+D++
Sbjct: 94 FLTIVFIFLNNKK-------WLIVLSILLAGSWGNLLARLWAPGNEQNIYGGVVDFL--- 143
Query: 67 TQTWSFA-------VFNLADLFISIGTCIIIYDDII 95
TW F+ VFNLADL+++I + I II
Sbjct: 144 --TWDFSLLNSRDYVFNLADLYVNIAIGLTILFTII 177
>gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional.
Length = 346
Score = 27.3 bits (61), Expect = 0.96
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 64 MIHTQTWSFAVFNL--ADL-FISIGTCIIIYDDIILQHRQKGKID 105
+I T W +A+ N DL I +G C +Y I +GK+D
Sbjct: 239 LIDTDHW-YAIANFRETDLKNIRVGDCATVYSMIDRGRPFEGKVD 282
>gnl|CDD|183113 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
Length = 471
Score = 27.1 bits (60), Expect = 0.96
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 35 FDIGYILITTGALGNVVDHCLYGYVIDYIM 64
F+ GYI+ TTGA G ++ + + V+ +M
Sbjct: 36 FNTGYIISTTGAAGTLLAYLIGALVVYLVM 65
>gnl|CDD|173241 PRK14780, PRK14780, lipoprotein signal peptidase; Provisional.
Length = 263
Score = 26.4 bits (58), Expect = 1.7
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 28/104 (26%)
Query: 16 LIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCL-------------------- 55
+I+ F+ FI+ KN S+ I + + G LGN++D +
Sbjct: 121 IILGFLSFIFLKN----SLLYIPLLFLLFGGLGNIIDRSIPEVELYKALPGIFHNSLINP 176
Query: 56 --YGYVIDYIMIHTQTWSF--AVFNLADLFISIGTCIIIYDDII 95
G D I W F ++ NL D++I +G C+++ II
Sbjct: 177 NSVGGGDDVINGVVDYWKFVNSIINLFDVYIVVGVCVLVVILII 220
>gnl|CDD|179304 PRK01574, lspA, signal peptidase II; Provisional.
Length = 163
Score = 25.0 bits (55), Expect = 3.9
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGY-VIDYI---- 63
+ + I+I+ F+F + K + I +LI +G +GN++D V+D++
Sbjct: 69 FFLIVPIIILIFVFSFYLK--ERNRIQRWALLLILSGGIGNIIDRLFRPEGVVDFLDVKF 126
Query: 64 --MIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
+ W FN AD ++ IG + + D ++ +
Sbjct: 127 FGIFGLDRWP--TFNFADSYVVIGMILFLIYDFFIKRKS 163
>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase.
Length = 386
Score = 24.8 bits (54), Expect = 4.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 65 IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
+H + F DL S G+ I D+I++H K
Sbjct: 55 VHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSK 91
>gnl|CDD|179043 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 24.8 bits (55), Expect = 4.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 78 ADLFISIGT 86
ADLFI IGT
Sbjct: 178 ADLFIVIGT 186
>gnl|CDD|178265 PLN02659, PLN02659, Probable galacturonosyltransferase.
Length = 534
Score = 24.6 bits (53), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 56 YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQ 97
Y V+++I IH L +LF S+ + + DDI++Q
Sbjct: 326 YNSVMNHIRIH----------LPELFPSLNKVVFLDDDIVVQ 357
>gnl|CDD|132618 TIGR03579, EF_0833, conserved hypothetical protein
EF_0833/AHA_3914. Members of this family of relatively
rare proteins are found in both Gram-positive (e.g.
Enterococcus faecalis) and Gram-negative (e.g. Aeromonas
hydrophila) bacteria, as part of a cluster of conserved
proteins. The function is unknown.
Length = 209
Score = 24.8 bits (54), Expect = 5.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKK 27
+LS +I + I I A IF+IWKK
Sbjct: 162 VLSAAGASIPIGIGSTIGALIFYIWKK 188
>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
Length = 670
Score = 24.2 bits (53), Expect = 7.1
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 27 KNPKTKSIFDIGYILITTGALGNVV----DHCLYGYVIDYIMIHTQTWSFAVF 75
+ P I+ + Y ++ VV H L+G +HT++ F VF
Sbjct: 22 EKPIRCRIYGVPYWIVKRDGKKIVVAPAAGH-LFG-------LHTKSKGFPVF 66
>gnl|CDD|181892 PRK09478, mglC, beta-methylgalactoside transporter inner membrane
component; Provisional.
Length = 336
Score = 24.3 bits (53), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 10 LVSIRILIIAFIFFIWKKNPKTKSIFDIG 38
+ ++ +AF++ +W K K+IF IG
Sbjct: 186 ITFYALIAVAFVWVLWNKTRFGKNIFAIG 214
>gnl|CDD|130223 TIGR01153, psbC, photosystem II 44 kDa subunit reaction center
protein (also called P6 protein, CP43), bacterial and
chloroplast. This model describes the Photosystem II,
44kDa subunit (also called P6 protein, CP43) in
bacterial and its equivalents in chloroplast of algae
and higher plants. Photosystem II is in many ways
functionally equivalent to bacterial reaction center. At
the core of Photosystem II are several light harvesting
cofactors including plastoquinones, pheophytins,
phyloquinones etc. These cofactors are intimately
associated with the polypeptides, which principally
including subunits 44 kDa protein,DI, DII, Cyt.b, Cyt.f,
iron-sulphur protein and others. Functinally 44 kDa
subunit is imlicated in chlorophyll binding. Together
they participate in the electron transfer reactions that
lead to the net production of the reducting equivalents
in the form of NADPH, which are used for reduction of
CO2 to carbohydrates(C6H1206). Phosystem II operates
during oxygenic photosynthesis and principal electron
donor is H2O. Although no high resolution X-ray
structural data is presently available, recently a 3D
structure of the supercomplex has been described by
cryo-electron microscopy. Besides a huge body of
literature exits that describes function using a variety
of biochemical and biophysical techniques.
Length = 432
Score = 24.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 20 FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61
F + WK + +I IL+ GAL V C +G + D
Sbjct: 114 FFGYDWKDKNQMTNILGYHLILLGIGALLLVAKACFFGGIYD 155
>gnl|CDD|132509 TIGR03469, HonB, hopene-associated glycosyltransferase HpnB. This
family of genes include a glycosyl transferase, group 2
domain (pfam00535) which are responsible, generally for
the transfer of nucleotide-diphosphate sugars to
substrates such as polysaccharides and lipids. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene.
Indeed, the members of this family appear to never be
found in a genome lacking squalene-hopene cyclase (SHC),
although not all genomes encoding SHC have this glycosyl
transferase. In the organism Zymomonas mobilis the
linkage of this gene to hopanoid biosynthesis has been
noted and the gene named HpnB. Hopanoids are known to
feature polar glycosyl head groups in many organisms.
Length = 384
Score = 23.9 bits (52), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 14 RILIIAFIFFI-------WKKNPKTKSIFDI-GYILITTGAL 47
++LI AF+FF W +P+ ++ G ILI AL
Sbjct: 180 KLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREAL 221
>gnl|CDD|178826 PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 269
Score = 24.0 bits (53), Expect = 9.8
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 17 IIAFIFFIWKKNPKTKSIFDIGYILITTGA----LGNVVDHCLYGYVID 61
I+A + F KK + D + G +GN ++ LYG D
Sbjct: 109 ILAMLLFCRKKKLSFLQLLDFIAPAVPIGQAIGRIGNFINGELYGRPTD 157
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.333 0.148 0.465
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,808,401
Number of extensions: 105053
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 98
Length of query: 108
Length of database: 5,994,473
Length adjustment: 74
Effective length of query: 34
Effective length of database: 4,395,481
Effective search space: 149446354
Effective search space used: 149446354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.1 bits)