RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
           structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
           aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A* (A:)
          Length = 134

 Score = 26.9 bits (59), Expect = 1.0
 Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)

Query: 84  IGTCIIIYDD--IILQHRQKGKIDFP 107
                +++ D  ++L         FP
Sbjct: 5   FSAGGVLFKDGEVLLIKTPSNVWSFP 30


>3f13_A Putative nudix hydrolase family member; structural genomics,
           PSI-2, protein structure initiative; 1.70A
           {Chromobacterium violaceum} (A:)
          Length = 163

 Score = 26.6 bits (58), Expect = 1.2
 Identities = 4/28 (14%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 82  ISIGTCIIIYDD--IILQHRQKGKIDFP 107
           ++     II     +++   + G+ + P
Sbjct: 15  LARRATAIIEMPDGVLVTASRGGRYNLP 42


>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A,
           hydrolase, riken structural genomics/proteomics
           initiative, RSGI; 1.70A {Thermus thermophilus HB8} (A:)
          Length = 126

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 82  ISIGTCIIIYDD---IILQHRQKGKIDFP 107
           + +G   ++++    ++L   + G   FP
Sbjct: 1   MELGAGGVVFNAKREVLLLRDRMGFWVFP 29


>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein
           structure initiative II(PSI II), nysgxrc; 1.76A
           {Bacillus thuringiensis str} (A:)
          Length = 153

 Score = 25.9 bits (56), Expect = 1.9
 Identities = 4/29 (13%), Positives = 9/29 (31%), Gaps = 3/29 (10%)

Query: 82  ISIGTCIIIYDD---IILQHRQKGKIDFP 107
                  +I ++   I+ Q+        P
Sbjct: 20  FXPSVAAVIKNEQGEILFQYPGGEYWSLP 48


>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics, MCSG; 1.63A {Streptococcus
           pneumoniae TIGR4} (A:)
          Length = 154

 Score = 25.0 bits (54), Expect = 3.7
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 87  CIIIYDDIILQHRQKGKIDFP 107
            +I+ +  +L  + KGK    
Sbjct: 24  ALIVQNHKLLVTKDKGKYYTI 44


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.148    0.465 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 868,716
Number of extensions: 34683
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 4,956,049
Length adjustment: 64
Effective length of query: 44
Effective length of database: 2,792,529
Effective search space: 122871276
Effective search space used: 122871276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.5 bits)