BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter asiaticus str. psy62] (108 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter asiaticus str. psy62] Length = 108 Score = 217 bits (552), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI Sbjct: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60 Query: 61 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ 108 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ Sbjct: 61 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ 108 >gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62] Length = 665 Score = 24.6 bits (52), Expect = 0.43, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Query: 26 KKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWS 71 K +P ++I+D G +++D L G V +YI ++T++WS Sbjct: 214 KDSPFIQTIYDSGG--------DDLLDLTLIGGVKNYIDLNTESWS 251 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 21.6 bits (44), Expect = 4.0, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSI 34 ++S+ SPTIL +IR ++ F +N K++ Sbjct: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 20.8 bits (42), Expect = 6.7, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 77 LADLFISIGTCIIIYDDIIL 96 +A +SI TCI +Y ++ + Sbjct: 700 MATAIVSIMTCIPVYKNVAM 719 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.333 0.148 0.465 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,607 Number of Sequences: 1233 Number of extensions: 2794 Number of successful extensions: 8 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 5 length of query: 108 length of database: 328,796 effective HSP length: 62 effective length of query: 46 effective length of database: 252,350 effective search space: 11608100 effective search space used: 11608100 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 32 (16.9 bits)