HHsearch alignment for GI: 254780750 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=90.11 E-value=1.4 Score=22.87 Aligned_cols=107 Identities=24% Similarity=0.225 Sum_probs=57.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC-----------CCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 399996778440789999999999999719853035320-----------682210567652376611385328999999
Q gi|254780750|r 651 KLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH-----------IGIVDKLFSRVGSADNLASGRSTFMVEMIE 719 (920)
Q Consensus 651 ~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~-----------i~~~D~IftRiGa~D~l~~g~STF~vEm~e 719 (920)
T Consensus 25 halL~~Gp~G~Gktt~a~~lA-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d-~lel~~s~~~~~--~-i~~~--~ 93 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALA-----KELLCENPTGLLPCGHCRSCKLIPAGNHPD-FLELNPSDLRKI--D-IIVE--Q 93 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHH-----HHHCCCCCCCCCCCCHHHHHHHHCCCCCCC-EEEECCCCCCCC--C-CHHH--H
T ss_conf 610037999997899999999-----996586643345520022444320256886-599773213333--0-0699--9
Q ss_pred HHHHHHHC------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEECCCH
Q ss_conf 99999958------9985699932588988056799999999999972-698499974875
Q gi|254780750|r 720 TASILNQA------TNQSFVILDEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFH 773 (920)
Q Consensus 720 ~~~IL~~a------t~~SLVllDElGrGTst~DG~aiA~aile~l~~~-~~~~~lfaTHy~ 773 (920)
T Consensus 94 vr~~~~~~~~~~~~~~~kviiidead~mt~--~A---~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 94 VRELAEFLSESPLEGGYKVVIIDEADKLTE--DA---ANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCH--HH---HHHHHHHCCCCCCCEEEEEEECCH
T ss_conf 999998604465667726999732032698--88---876754332488871699974985