HHsearch alignment for GI: 254780750 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=96.01  E-value=0.12  Score=30.74  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCC
Q ss_conf             999677844078999999999999971985303532068221056765237661138532899999999999958-9985
Q gi|254780750|r  653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA-TNQS  731 (920)
Q Consensus       653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~a-t~~S  731 (920)
T Consensus        40 lLf~GppG~GKTt~a~~la-----~~l~~~~---------~~~~~lelnasd~--r~id~vr~~i~~~~~~~~~~~~~~k  103 (318)
T PRK00440         40 LLFAGPPGTGKTTAALALA-----RELYGEY---------WRENFLELNASDE--RGIDVIRNKIKEFARTAPVGGAPFK  103 (318)
T ss_pred             EEEECCCCCCHHHHHHHHH-----HHHCCCC---------CCCCEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             9888959988999999999-----9976986---------4347689516456--6717899999999972677899738


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCEEEEECCCH
Q ss_conf             699932588988056799999999999972--698499974875
Q gi|254780750|r  732 FVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFH  773 (920)
Q Consensus       732 LVllDElGrGTst~DG~aiA~aile~l~~~--~~~~~lfaTHy~  773 (920)
T Consensus       104 iiiiDE~d~l~~--~a----q~aL~~~mE~~~~~~~fil~~n~~  141 (318)
T PRK00440        104 IIFLDEADNLTS--DA----QQALRRTMEMYSQTTRFILSCNYS  141 (318)
T ss_pred             EEEEECCCCCCH--HH----HHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             999868553225--56----788876431056662588634883