HHsearch alignment for GI: 254780750 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=96.01 E-value=0.12 Score=30.74 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=52.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 999677844078999999999999971985303532068221056765237661138532899999999999958-9985
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQA-TNQS 731 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~a-t~~S 731 (920)
T Consensus 40 lLf~GppG~GKTt~a~~la-----~~l~~~~---------~~~~~lelnasd~--r~id~vr~~i~~~~~~~~~~~~~~k 103 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALA-----RELYGEY---------WRENFLELNASDE--RGIDVIRNKIKEFARTAPVGGAPFK 103 (318)
T ss_pred EEEECCCCCCHHHHHHHHH-----HHHCCCC---------CCCCEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 9888959988999999999-----9976986---------4347689516456--6717899999999972677899738
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCEEEEECCCH
Q ss_conf 699932588988056799999999999972--698499974875
Q gi|254780750|r 732 FVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFH 773 (920)
Q Consensus 732 LVllDElGrGTst~DG~aiA~aile~l~~~--~~~~~lfaTHy~ 773 (920)
T Consensus 104 iiiiDE~d~l~~--~a----q~aL~~~mE~~~~~~~fil~~n~~ 141 (318)
T PRK00440 104 IIFLDEADNLTS--DA----QQALRRTMEMYSQTTRFILSCNYS 141 (318)
T ss_pred EEEEECCCCCCH--HH----HHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 999868553225--56----788876431056662588634883