HHsearch alignment for GI: 254780750 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=96.19 E-value=0.046 Score=33.84 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=60.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH------HHHHHH-
Q ss_conf 9996778440789999999999999719853035320682210567652376611385328999999------999999-
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE------TASILN- 725 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e------~~~IL~- 725 (920)
T Consensus 104 vil~G~~GtGKThLA~Alg~~A~~--~G~------------~v~f~~~~---~L-------~~~L~~a~~~~~~~~~l~r 159 (258)
T PRK09183 104 IVLLGPSGVGKTHLAIALGYEAVR--AGI------------KVRFTTAA---DL-------LLQLSTAQRQGRYKTTLQR 159 (258)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCC------------EEEEEEHH---HH-------HHHHHHHHHCCCHHHHHHH
T ss_conf 799899998689999999999998--799------------39997899---99-------9999999876859999998
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 589985699932588988056799999999999972698499974875
Q gi|254780750|r 726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 726 ~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 160 ~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~-S~IiTSn~~ 205 (258)
T PRK09183 160 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G-AMILTSNLP 205 (258)
T ss_pred HHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-C-CEEEECCCC
T ss_conf 743465144313315468888999999999998576-7-789988999