HHsearch alignment for GI: 254780750 and conserved domain: PRK13409
>PRK13409 putative ATPase RIL; Provisional.
Probab=97.35 E-value=0.0057 Score=40.63 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=80.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH-----CCCCCCCEEEEE---EECCCCCCC-----CCCHHHH
Q ss_conf 643999967784407899999999999997198530353-----206822105676---523766113-----8532899
Q gi|254780750|r 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASY-----AHIGIVDKLFSR---VGSADNLAS-----GRSTFMV 715 (920)
Q Consensus 649 ~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~-----a~i~~~D~IftR---iGa~D~l~~-----g~STF~v 715 (920)
T Consensus 364 ~GEiigIvG~NGaGKTTLlKiLa--------G~lkPd~G~V~~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~~~~ 435 (590)
T PRK13409 364 KGEVIGIVGPNGIGKTTFVKLLA--------GVLKPDEGEVDTDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS 435 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 47489998888887899999982--------8877887447547748733600146868819999986244225389999
Q ss_pred HH----------------------HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 99----------------------99999999589985699932588988056799999999999972698499974875
Q gi|254780750|r 716 EM----------------------IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 716 Em----------------------~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 436 ell~~L~l~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~~~~~~-~~t~~vV~HD~ 514 (590)
T PRK13409 436 EIIKPLNLEKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRRIAEEK-EKAALVVDHDI 514 (590)
T ss_pred HHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCH
T ss_conf 99988788867649624409899999999998667999999948988778899999999999999866-97599994709
Q ss_pred HHHHHHHHCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 7976643068858999999960992778777744789887789999982999899999999999998
Q gi|254780750|r 774 ELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDILKTFE 840 (920)
Q Consensus 774 eL~~l~~~~~~v~n~~~~~~~~~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A~~~~~~le 840 (920)
T Consensus 515 ~~~d~lsd--rv-------------~vf--~G~p~~~~---------~a~~p~~~~~gmn~fl~~~~ 555 (590)
T PRK13409 515 YMIDYISD--RL-------------MVF--EGEPGKHG---------HASGPLDMREGMNRFLKELG 555 (590)
T ss_pred HHHHHHCC--EE-------------EEE--CCCCCCCC---------EECCCCCHHHHHHHHHHHCC
T ss_conf 99987616--69-------------998--17887651---------40598447899999998779