HHsearch alignment for GI: 254780750 and conserved domain: PRK13540
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional.
Probab=97.98 E-value=0.0002 Score=51.48 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH--------------------HHHHHCCCCCCHHHC---CCC
Q ss_conf 443456358777766439999677844078999999999--------------------999971985303532---068
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI--------------------VIMAQMGSYVPASYA---HIG 691 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~--------------------vilAQiG~fVPA~~a---~i~ 691 (920)
T Consensus 16 vl~~is~~i----~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~~~i~~~~~~~~~~~~-~~~~~~~i~~~lt 90 (200)
T PRK13540 16 LLQQISFHL----PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLT 90 (200)
T ss_pred EEECEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEE-EECCCCCCCCCCC
T ss_conf 881227898----79979999889998799999999778588985699999864634477763378-7444346786776
Q ss_pred CCCEEEEEEECC---------------CCC----CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 221056765237---------------661----1385328999999999999589985699932588988056799999
Q gi|254780750|r 692 IVDKLFSRVGSA---------------DNL----ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAW 752 (920)
Q Consensus 692 ~~D~IftRiGa~---------------D~l----~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~ 752 (920)
T Consensus 91 v~e~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGqkqrv~lar~l--~~~p~illLDEPt~gLD~~~~~~i-~ 167 (200)
T PRK13540 91 LRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW--MSKAKLWLLDEPLVALDELSLLTI-I 167 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHH-H
T ss_conf 9999875543383166799999972975564497124999999999999999--839998999177643899999999-9
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHH
Q ss_conf 999999972698499974875797664
Q gi|254780750|r 753 ATIEYLHETNRCRGLLATHFHELTDLS 779 (920)
Q Consensus 753 aile~l~~~~~~~~lfaTHy~eL~~l~ 779 (920)
T Consensus 168 ~~l~~~~~~-g~tiii~sH~~~~l~~a 193 (200)
T PRK13540 168 TKIQEHRAK-GGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHHHC-CCEEEEEECCHHHHHHC
T ss_conf 999999868-99999994264777768