HHsearch alignment for GI: 254780750 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=94.09 E-value=0.056 Score=33.21 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHH---HHHHHHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Q ss_conf 61138532899999---9999999--58998569993258898805679999999999997269849997487579766
Q gi|254780750|r 705 NLASGRSTFMVEMI---ETASILN--QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDL 778 (920)
Q Consensus 705 ~l~~g~STF~vEm~---e~~~IL~--~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~l 778 (920)
T Consensus 970 tlSGGE-~Fl~slSlaLAladl~~~~~~~~L~sLfiDE-GFGslD~~~~d~~~~~L~ai~~~~~~~iGv~SHv~~~~er 1046 (1063)
T TIGR00618 970 TLSGGE-TFLASLSLALALADLLSQRGGTALDSLFIDE-GFGSLDEDSLDRAVEILDAIKEDVAKMIGVISHVPEFRER 1046 (1063)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 344179-9999999999999998630551335543205-7777777789899999999884489558654075889742