HHsearch alignment for GI: 254780750 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=96.48 E-value=0.016 Score=37.21 Aligned_cols=129 Identities=28% Similarity=0.426 Sum_probs=75.4
Q ss_pred ECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHHCCCCCCHHHCCCC
Q ss_conf 00046805887631028770444345635877776643999967784407899999999999--9971985303532068
Q gi|254780750|r 614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI--MAQMGSYVPASYAHIG 691 (920)
Q Consensus 614 i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vi--lAQiG~fVPA~~a~i~ 691 (920)
T Consensus 105 ~~G~A~~~~~yL~d~~~---~~~N---------------TLiIsPPq~GKTTlLRDlaR~~StG~~~~~~----~g~KVg 162 (282)
T TIGR02858 105 VLGAADKILPYLVDRNG---RVLN---------------TLIISPPQCGKTTLLRDLARILSTGISKLGL----KGKKVG 162 (282)
T ss_pred CCCCCHHHHHHHHCCCC---CEEE---------------EEEECCCCCCCCCHHHHHHHHHHCCCCCCCC----CCCCEE
T ss_conf 05775666887730589---4467---------------8888688988510488898886078542468----997469
Q ss_pred CCCE---EEE--------EEECCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2210---567--------65237661138--5328999999999999589985699932588988056799999999999
Q gi|254780750|r 692 IVDK---LFS--------RVGSADNLASG--RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL 758 (920)
Q Consensus 692 ~~D~---Ift--------RiGa~D~l~~g--~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l 758 (920)
T Consensus 163 ivDERSEIAgC~~GvPQ~~vG~RtDVLD~CPKAEGm--M----M~iRSMSP~-Viv~DEIGr---~ED----~~Al~eA~ 228 (282)
T TIGR02858 163 IVDERSEIAGCVNGVPQLDVGIRTDVLDGCPKAEGM--M----MLIRSMSPD-VIVVDEIGR---EED----VEALLEAL 228 (282)
T ss_pred EEECCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH--H----HHHHCCCCC-EEEEECCCC---HHH----HHHHHHHH
T ss_conf 984324656545882414467606751788537899--9----999706985-799814889---533----89999986
Q ss_pred HHHCCCEEEEECCCHHHHHHHH
Q ss_conf 9726984999748757976643
Q gi|254780750|r 759 HETNRCRGLLATHFHELTDLSK 780 (920)
Q Consensus 759 ~~~~~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 229 na--GV~~I~TaHg~~~~Dl~k 248 (282)
T TIGR02858 229 NA--GVSVIATAHGRDLEDLKK 248 (282)
T ss_pred CC--CCEEEEEECCCCHHHHHC
T ss_conf 16--756887640488126650