HHsearch alignment for GI: 254780750 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=96.48  E-value=0.016  Score=37.21  Aligned_cols=129  Identities=28%  Similarity=0.426  Sum_probs=75.4

Q ss_pred             ECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHHCCCCCCHHHCCCC
Q ss_conf             00046805887631028770444345635877776643999967784407899999999999--9971985303532068
Q gi|254780750|r  614 VKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI--MAQMGSYVPASYAHIG  691 (920)
Q Consensus       614 i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vi--lAQiG~fVPA~~a~i~  691 (920)
T Consensus       105 ~~G~A~~~~~yL~d~~~---~~~N---------------TLiIsPPq~GKTTlLRDlaR~~StG~~~~~~----~g~KVg  162 (282)
T TIGR02858       105 VLGAADKILPYLVDRNG---RVLN---------------TLIISPPQCGKTTLLRDLARILSTGISKLGL----KGKKVG  162 (282)
T ss_pred             CCCCCHHHHHHHHCCCC---CEEE---------------EEEECCCCCCCCCHHHHHHHHHHCCCCCCCC----CCCCEE
T ss_conf             05775666887730589---4467---------------8888688988510488898886078542468----997469


Q ss_pred             CCCE---EEE--------EEECCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2210---567--------65237661138--5328999999999999589985699932588988056799999999999
Q gi|254780750|r  692 IVDK---LFS--------RVGSADNLASG--RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYL  758 (920)
Q Consensus       692 ~~D~---Ift--------RiGa~D~l~~g--~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l  758 (920)
T Consensus       163 ivDERSEIAgC~~GvPQ~~vG~RtDVLD~CPKAEGm--M----M~iRSMSP~-Viv~DEIGr---~ED----~~Al~eA~  228 (282)
T TIGR02858       163 IVDERSEIAGCVNGVPQLDVGIRTDVLDGCPKAEGM--M----MLIRSMSPD-VIVVDEIGR---EED----VEALLEAL  228 (282)
T ss_pred             EEECCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH--H----HHHHCCCCC-EEEEECCCC---HHH----HHHHHHHH
T ss_conf             984324656545882414467606751788537899--9----999706985-799814889---533----89999986


Q ss_pred             HHHCCCEEEEECCCHHHHHHHH
Q ss_conf             9726984999748757976643
Q gi|254780750|r  759 HETNRCRGLLATHFHELTDLSK  780 (920)
Q Consensus       759 ~~~~~~~~lfaTHy~eL~~l~~  780 (920)
T Consensus       229 na--GV~~I~TaHg~~~~Dl~k  248 (282)
T TIGR02858       229 NA--GVSVIATAHGRDLEDLKK  248 (282)
T ss_pred             CC--CCEEEEEECCCCHHHHHC
T ss_conf             16--756887640488126650