HHsearch alignment for GI: 254780750 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.81 E-value=0.00052 Score=48.39 Aligned_cols=131 Identities=27% Similarity=0.321 Sum_probs=72.6
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHC------------------CCCCCC-
Q ss_conf 4443456358777766439999677844078999999999999971985303532------------------068221-
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYA------------------HIGIVD- 694 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a------------------~i~~~D- 694 (920)
T Consensus 479 ~vl~~vsl~i----~~Ge~vaIvG~sGsGKSTL~kll--------~Gl~~p~~G~i~idg~~~~~~~~~~~r~~i~~v~Q 546 (694)
T TIGR03375 479 PALDNVSLTI----RPGEKVAIIGRIGSGKSTLLKLL--------LGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred HHHCCHHHEE----CCCCEEEEEECCCCCHHHHHHHH--------CCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECC
T ss_conf 2213631188----79978999805898788999985--------56758998879989854254999999730213576
Q ss_pred --EEEEEEECCCCCCCCCCHH-HHHHHHHHHHH----------------------------------HH--CCCCCEEEE
Q ss_conf --0567652376611385328-99999999999----------------------------------95--899856999
Q gi|254780750|r 695 --KLFSRVGSADNLASGRSTF-MVEMIETASIL----------------------------------NQ--ATNQSFVIL 735 (920)
Q Consensus 695 --~IftRiGa~D~l~~g~STF-~vEm~e~~~IL----------------------------------~~--at~~SLVll 735 (920)
T Consensus 547 ~~~lf~g-Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQri~lARAl~~~p~ilil 625 (694)
T TIGR03375 547 DPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7711074-699998416999999999999998197999971856678774689994689999999999999579998999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHH
Q ss_conf 32588988056799999999999972-69849997487579766430
Q gi|254780750|r 736 DEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLATHFHELTDLSKS 781 (920)
Q Consensus 736 DElGrGTst~DG~aiA~aile~l~~~-~~~~~lfaTHy~eL~~l~~~ 781 (920)
T Consensus 626 DE~---ts~LD~~~-e~~i~~~l~~~~~~~T~i~itHrls~i~~aD~ 668 (694)
T TIGR03375 626 DEP---TSAMDNRS-EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR 668 (694)
T ss_pred ECC---CCCCCHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHCCE
T ss_conf 787---56889999-99999999986699989998168999984999