HHsearch alignment for GI: 254780750 and conserved domain: TIGR03411
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.38 E-value=0.0028 Score=42.92 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=68.5
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC------CC----CHHHCCCCC-----CCEEEEE
Q ss_conf 44345635877776643999967784407899999999999997198------53----035320682-----2105676
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS------YV----PASYAHIGI-----VDKLFSR 699 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~------fV----PA~~a~i~~-----~D~IftR 699 (920)
T Consensus 17 al~~vsl~v----~~Gei~~liGpNGaGKSTLl~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~gIg~~~Q~~~l~~~ 91 (242)
T TIGR03411 17 ALNDLSLYV----DPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred EECCCEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEECCEECCCCCHHHHHHCCCCEECCCCCCCCC
T ss_conf 874507898----8998999998999759999999967957-88559999999888999999997488545266676766
Q ss_pred EECCCCCCCC----CCHH--------------------------------------HHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5237661138----5328--------------------------------------999999999999589985699932
Q gi|254780750|r 700 VGSADNLASG----RSTF--------------------------------------MVEMIETASILNQATNQSFVILDE 737 (920)
Q Consensus 700 iGa~D~l~~g----~STF--------------------------------------~vEm~e~~~IL~~at~~SLVllDE 737 (920)
T Consensus 92 ltv~enl~~~~~~~~~~~~~l~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGqkqrv~iA~aL--~~~P~lllLDE 169 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL--MQDPKLLLLDE 169 (242)
T ss_pred CCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH--HHCCCEEEEEC
T ss_conf 9799999998751555024430366499999999999877997265586345997899999999999--73899899918
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 588988056799999999999972698499974875797
Q gi|254780750|r 738 IGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 (920)
Q Consensus 738 lGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~ 776 (920)
T Consensus 170 Pt~gLD~~~~~~i-~~ll~~l~~--~~tvi~isHdl~~~ 205 (242)
T TIGR03411 170 PVAGMTDEETEKT-AELLKSLAG--KHSVVVVEHDMEFV 205 (242)
T ss_pred CCCCCCHHHHHHH-HHHHHHHHC--CCEEEEEECCHHHH
T ss_conf 6436998999999-999999857--99799997859999