HHsearch alignment for GI: 254780750 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.13 E-value=0.07 Score=32.51 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=69.4
Q ss_pred CCCEEEEEECCCCCCHHHH-HHHHHHHHHHHHCCC---CCCHHHCCCCCCCEEEEEEEC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 6643999967784407899-999999999997198---530353206822105676523-76611385328999999999
Q gi|254780750|r 648 NSGKLWLLTGPNMGGKSTF-LRQNALIVIMAQMGS---YVPASYAHIGIVDKLFSRVGS-ADNLASGRSTFMVEMIETAS 722 (920)
Q Consensus 648 ~~~~~~iiTGpNmgGKSt~-lRqval~vilAQiG~---fVPA~~a~i~~~D~IftRiGa-~D~l~~g~STF~vEm~e~~~ 722 (920)
T Consensus 53 P~GRivei~G~essGKTtlal~~ia~aQ---k~gg~~~~iDaE~a~-d~--~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~ 126 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHAL-DP--VYAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---HCCCEEEEEEHHHCC-CH--HHHHHCCCCHHHEEEECCCHHHHHHHHHH
T ss_conf 6880899988987779999999999987---359839999625425-98--99998099846758966638999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHH----------H-H----HHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 999589985699932588988056----------7-9----999999999997269849997487579
Q gi|254780750|r 723 ILNQATNQSFVILDEIGRGTATLD----------G-L----SIAWATIEYLHETNRCRGLLATHFHEL 775 (920)
Q Consensus 723 IL~~at~~SLVllDElGrGTst~D----------G-~----aiA~aile~l~~~~~~~~lfaTHy~eL 775 (920)
T Consensus 127 ~li~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~~~lIfiNQ~R~k 194 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREK 194 (325)
T ss_pred HHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHH
T ss_conf 97515887679981511236578876011321143899999999999998753378079995543221