HHsearch alignment for GI: 254780750 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.61 E-value=0.05 Score=33.56 Aligned_cols=86 Identities=27% Similarity=0.339 Sum_probs=46.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH-HHCCCCCCHHHCCCCCCCEE--EEEEECCCCCC----CCCCHHHHHHHHHHHHHH
Q ss_conf 999677844078999999999999-97198530353206822105--67652376611----385328999999999999
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIM-AQMGSYVPASYAHIGIVDKL--FSRVGSADNLA----SGRSTFMVEMIETASILN 725 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vil-AQiG~fVPA~~a~i~~~D~I--ftRiGa~D~l~----~g~STF~vEm~e~~~IL~ 725 (920)
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89998999989999999999987639979999866644899999998622467130799935999769999999999999
Q ss_pred HCCCCCEEEEECC
Q ss_conf 5899856999325
Q gi|254780750|r 726 QATNQSFVILDEI 738 (920)
Q Consensus 726 ~at~~SLVllDEl 738 (920)
T Consensus 82 ~~~~~vliiiDSi 94 (165)
T cd01120 82 ERGGDDLIILDEL 94 (165)
T ss_pred HCCCCEEEEEECH
T ss_conf 8699779999288