HHsearch alignment for GI: 254780750 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.14 E-value=4.1e-05 Score=56.67 Aligned_cols=131 Identities=28% Similarity=0.361 Sum_probs=77.5
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHCC-CCCCHHHCCCCCC
Q ss_conf 4434563587777664399996778440789999999999--------------------999719-8530353206822
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIV--------------------IMAQMG-SYVPASYAHIGIV 693 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~v--------------------ilAQiG-~fVPA~~a~i~~~ 693 (920)
T Consensus 15 ~l~~vs~~v----~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g~di~~~~~~~r~r~gig~~pQ~~------ 84 (232)
T cd03218 15 VVNGVSLSV----KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA------ 84 (232)
T ss_pred EECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEECCCCC------
T ss_conf 882606798----9995999999999619999999977999986299999999999999999971979877777------
Q ss_pred CEEEEEEECCCCCC----------------------------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 10567652376611----------------------------------38532899999999999958998569993258
Q gi|254780750|r 694 DKLFSRVGSADNLA----------------------------------SGRSTFMVEMIETASILNQATNQSFVILDEIG 739 (920)
Q Consensus 694 D~IftRiGa~D~l~----------------------------------~g~STF~vEm~e~~~IL~~at~~SLVllDElG 739 (920)
T Consensus 85 -~l~~~ltV~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~iAraL--~~~P~illlDEPt 161 (232)
T cd03218 85 -SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL--ATNPKFLLLDEPF 161 (232)
T ss_pred -CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH--HCCCCEEEECCCC
T ss_conf -6788888999999999972999999999999999876982465394255999999999999999--6699999988985
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 8988056799999999999972698499974875797-6643
Q gi|254780750|r 740 RGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 740 rGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 162 ~GLDp~~~~~i-~~~i~~l~~~-g~tili~tH~l~~~~~~~d 201 (232)
T cd03218 162 AGVDPIAVQDI-QKIIKILKDR-GIGVLITDHNVRETLSITD 201 (232)
T ss_pred CCCCHHHHHHH-HHHHHHHHHC-CCEEEEEECCHHHHHHHCC
T ss_conf 68899999999-9999999958-9999999283999998699