HHsearch alignment for GI: 254780750 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.63 E-value=0.0013 Score=45.43 Aligned_cols=137 Identities=27% Similarity=0.368 Sum_probs=72.7
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC------C----CHHHCCCCCC-----CEEEEE
Q ss_conf 443456358777766439999677844078999999999999971985------3----0353206822-----105676
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY------V----PASYAHIGIV-----DKLFSR 699 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f------V----PA~~a~i~~~-----D~IftR 699 (920)
T Consensus 15 aL~~vsl~i----~~Gei~gliG~nGaGKSTL~~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~ 89 (236)
T cd03219 15 ALDDVSFSV----RPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHCCCEEEECCCCCCCC
T ss_conf 872338998----899899999899973999999996798-788318999999668899999997597676014102655
Q ss_pred EECCCCCCCC-----CCHHH--------HHHHH-------------------------------HHHHHHHCCCCCEEEE
Q ss_conf 5237661138-----53289--------99999-------------------------------9999995899856999
Q gi|254780750|r 700 VGSADNLASG-----RSTFM--------VEMIE-------------------------------TASILNQATNQSFVIL 735 (920)
Q Consensus 700 iGa~D~l~~g-----~STF~--------vEm~e-------------------------------~~~IL~~at~~SLVll 735 (920)
T Consensus 90 ltv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~Qrv~iAral--~~~P~lliL 167 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL--ATDPKLLLL 167 (236)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHHH--HCCCCEEEE
T ss_conf 438998988887604543001102358999999999999974998043886266999999999999999--659999999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHH
Q ss_conf 3258898805679999999999997269849997487579-76643
Q gi|254780750|r 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSK 780 (920)
Q Consensus 736 DElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL-~~l~~ 780 (920)
T Consensus 168 DEPT~gLD~~~~~~i-~~~l~~l~~~-G~tii~vsHdl~~~~~~~D 211 (236)
T cd03219 168 DEPAAGLNPEETEEL-AELIRELRER-GITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred ECCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf 487658999999999-9999999965-9999999174899999699