HHsearch alignment for GI: 254780750 and conserved domain: cd03219

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.63  E-value=0.0013  Score=45.43  Aligned_cols=137  Identities=27%  Similarity=0.368  Sum_probs=72.7

Q ss_pred             EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC------C----CHHHCCCCCC-----CEEEEE
Q ss_conf             443456358777766439999677844078999999999999971985------3----0353206822-----105676
Q gi|254780750|r  635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY------V----PASYAHIGIV-----DKLFSR  699 (920)
Q Consensus       635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f------V----PA~~a~i~~~-----D~IftR  699 (920)
T Consensus        15 aL~~vsl~i----~~Gei~gliG~nGaGKSTL~~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~   89 (236)
T cd03219          15 ALDDVSFSV----RPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE   89 (236)
T ss_pred             EECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHCCCEEEECCCCCCCC
T ss_conf             872338998----899899999899973999999996798-788318999999668899999997597676014102655


Q ss_pred             EECCCCCCCC-----CCHHH--------HHHHH-------------------------------HHHHHHHCCCCCEEEE
Q ss_conf             5237661138-----53289--------99999-------------------------------9999995899856999
Q gi|254780750|r  700 VGSADNLASG-----RSTFM--------VEMIE-------------------------------TASILNQATNQSFVIL  735 (920)
Q Consensus       700 iGa~D~l~~g-----~STF~--------vEm~e-------------------------------~~~IL~~at~~SLVll  735 (920)
T Consensus        90 ltv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~Qrv~iAral--~~~P~lliL  167 (236)
T cd03219          90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL--ATDPKLLLL  167 (236)
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHHH--HCCCCEEEE
T ss_conf             438998988887604543001102358999999999999974998043886266999999999999999--659999999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHH
Q ss_conf             3258898805679999999999997269849997487579-76643
Q gi|254780750|r  736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHEL-TDLSK  780 (920)
Q Consensus       736 DElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL-~~l~~  780 (920)
T Consensus       168 DEPT~gLD~~~~~~i-~~~l~~l~~~-G~tii~vsHdl~~~~~~~D  211 (236)
T cd03219         168 DEPAAGLNPEETEEL-AELIRELRER-GITVLLVEHDMDVVMSLAD  211 (236)
T ss_pred             ECCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf             487658999999999-9999999965-9999999174899999699