HHsearch alignment for GI: 254780750 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.96 E-value=0.00025 Score=50.83 Aligned_cols=132 Identities=22% Similarity=0.259 Sum_probs=67.5
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEE----------CC
Q ss_conf 44434563587777664399996778440789999999999999719853035320682210567652----------37
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG----------SA 703 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiG----------a~ 703 (920)
T Consensus 36 ~AL~~isf~i----~~GeivgilG~NGaGKSTLl~~i~--------Gl~~p-~~G~I~i~G~~~~~~~~~~~~~p~ltv~ 102 (224)
T cd03220 36 WALKDVSFEV----PRGERIGLIGRNGAGKSTLLRLLA--------GIYPP-DSGTVTVRGRVSSLLGLGGGFNPELTGR 102 (224)
T ss_pred EEECCEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCC-CCCEEEECCEECCCCCCCEECCCCCCHH
T ss_conf 9876707898----389899999799981999999997--------58777-8776999989843015742039988299
Q ss_pred CCCC-----CCCCH--------HHHHHHHHHHH-------------------HHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 6611-----38532--------89999999999-------------------9958998569993258898805679999
Q gi|254780750|r 704 DNLA-----SGRST--------FMVEMIETASI-------------------LNQATNQSFVILDEIGRGTATLDGLSIA 751 (920)
Q Consensus 704 D~l~-----~g~ST--------F~vEm~e~~~I-------------------L~~at~~SLVllDElGrGTst~DG~aiA 751 (920)
T Consensus 103 enl~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~-~~~~i 181 (224)
T cd03220 103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-FQEKC 181 (224)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHH
T ss_conf 99999999829658999999999998636755653866546999999999999996699999991886656999-99999
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf 9999999972698499974875797-6643
Q gi|254780750|r 752 WATIEYLHETNRCRGLLATHFHELT-DLSK 780 (920)
Q Consensus 752 ~aile~l~~~~~~~~lfaTHy~eL~-~l~~ 780 (920)
T Consensus 182 ~~~i~~l~~~-g~tiii~sH~l~~v~~lcd 210 (224)
T cd03220 182 QRRLRELLKQ-GKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf 9999999858-9999998898899999699