HHsearch alignment for GI: 254780750 and conserved domain: cd03220

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.96  E-value=0.00025  Score=50.83  Aligned_cols=132  Identities=22%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEE----------CC
Q ss_conf             44434563587777664399996778440789999999999999719853035320682210567652----------37
Q gi|254780750|r  634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVG----------SA  703 (920)
Q Consensus       634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiG----------a~  703 (920)
T Consensus        36 ~AL~~isf~i----~~GeivgilG~NGaGKSTLl~~i~--------Gl~~p-~~G~I~i~G~~~~~~~~~~~~~p~ltv~  102 (224)
T cd03220          36 WALKDVSFEV----PRGERIGLIGRNGAGKSTLLRLLA--------GIYPP-DSGTVTVRGRVSSLLGLGGGFNPELTGR  102 (224)
T ss_pred             EEECCEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCC-CCCEEEECCEECCCCCCCEECCCCCCHH
T ss_conf             9876707898----389899999799981999999997--------58777-8776999989843015742039988299


Q ss_pred             CCCC-----CCCCH--------HHHHHHHHHHH-------------------HHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             6611-----38532--------89999999999-------------------9958998569993258898805679999
Q gi|254780750|r  704 DNLA-----SGRST--------FMVEMIETASI-------------------LNQATNQSFVILDEIGRGTATLDGLSIA  751 (920)
Q Consensus       704 D~l~-----~g~ST--------F~vEm~e~~~I-------------------L~~at~~SLVllDElGrGTst~DG~aiA  751 (920)
T Consensus       103 enl~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~-~~~~i  181 (224)
T cd03220         103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-FQEKC  181 (224)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHH
T ss_conf             99999999829658999999999998636755653866546999999999999996699999991886656999-99999


Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHH-HHHH
Q ss_conf             9999999972698499974875797-6643
Q gi|254780750|r  752 WATIEYLHETNRCRGLLATHFHELT-DLSK  780 (920)
Q Consensus       752 ~aile~l~~~~~~~~lfaTHy~eL~-~l~~  780 (920)
T Consensus       182 ~~~i~~l~~~-g~tiii~sH~l~~v~~lcd  210 (224)
T cd03220         182 QRRLRELLKQ-GKTVILVSHDPSSIKRLCD  210 (224)
T ss_pred             HHHHHHHHHC-CCEEEEECCCHHHHHHHCC
T ss_conf             9999999858-9999998898899999699