HHsearch alignment for GI: 254780750 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.21 E-value=3.6e-05 Score=57.08 Aligned_cols=118 Identities=27% Similarity=0.281 Sum_probs=68.8
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf 44434563587777664399996778440789999999999999719853035320682210567652376611385328
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTF 713 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF 713 (920)
T Consensus 14 ~vl~~is~~i----~~ge~~~l~G~NGsGKTTl~~~l--------~G~~~~-~~G~i~~~~~~--~i~y~~QLSgG---- 74 (144)
T cd03221 14 LLLKDISLTI----NPGDRIGLVGRNGAGKSTLLKLI--------AGELEP-DEGIVTWGSTV--KIGYFEQLSGG---- 74 (144)
T ss_pred EEEEEEEEEE----CCCCEEEEECCCCCCHHHHHHHH--------HCCCCC-CCEEEEECCCC--EEEEEHHCCHH----
T ss_conf 9996348998----79999999989998499999998--------489889-85099999960--89987007999----
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Q ss_conf 9999999999995899856999325889880567999999999999726984999748757976
Q gi|254780750|r 714 MVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 (920)
Q Consensus 714 ~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~ 777 (920)
T Consensus 75 --qkqr~~la~al~~~p~iliLDEPt~~LD~---~~~-~~i~~~l~~~-~~tii~vsHd~~~~~ 131 (144)
T cd03221 75 --EKMRLALAKLLLENPNLLLLDEPTNHLDL---ESI-EALEEALKEY-PGTVILVSHDRYFLD 131 (144)
T ss_pred --HHHHHHHHHHHCCCCCEEEEECCCCCCCH---HHH-HHHHHHHHHC-CCEEEEEECCHHHHH
T ss_conf --99999999997259989999577555899---999-9999999970-999999967989999